/usr/local/bin/picard: line 5: warning: setlocale: LC_ALL: cannot change locale (en_US.UTF-8): No such file or directory Jun 03, 2026 8:04:52 PM com.intel.gkl.NativeLibraryLoader load INFO: Loading libgkl_compression.so from jar:file:/usr/local/share/picard-3.1.0-0/picard.jar!/com/intel/gkl/native/libgkl_compression.so [Wed Jun 03 20:04:52 GMT 2026] CollectRnaSeqMetrics --REF_FLAT ref_annot.gtf.refflat --RIBOSOMAL_INTERVALS ctat_ref_annot.interval_list --STRAND_SPECIFICITY NONE --INPUT aih-tih-sc-01c779-R1_A23YTGFLT4_1.Aligned.sortedByCoord.out.bam --OUTPUT aih-tih-sc-01c779-R1_A23YTGFLT4_1_rna_metrics.txt --TMP_DIR ./tmp --MINIMUM_LENGTH 500 --RRNA_FRAGMENT_PERCENTAGE 0.8 --METRIC_ACCUMULATION_LEVEL ALL_READS --END_BIAS_BASES 100 --ASSUME_SORTED true --STOP_AFTER 0 --VERBOSITY INFO --QUIET false --VALIDATION_STRINGENCY STRICT --COMPRESSION_LEVEL 5 --MAX_RECORDS_IN_RAM 500000 --CREATE_INDEX false --CREATE_MD5_FILE false --help false --version false --showHidden false --USE_JDK_DEFLATER false --USE_JDK_INFLATER false [Wed Jun 03 20:04:52 GMT 2026] Executing as ?@nf-651bcfa864e435565f0afb93a78511df-0f3bb-b9jzg on Linux 6.12.83 amd64; OpenJDK 64-Bit Server VM 20-internal-adhoc..src; Deflater: Intel; Inflater: Intel; Provider GCS is available; Picard version: Version:3.1.0 WARNING: BAM index file /tmp/nxf.XXXXMWGloY/aih-tih-sc-01c779-R1_A23YTGFLT4_1.Aligned.sortedByCoord.out.bam.bai is older than BAM /tmp/nxf.XXXXMWGloY/aih-tih-sc-01c779-R1_A23YTGFLT4_1.Aligned.sortedByCoord.out.bam INFO 2026-06-03 20:04:55 CollectRnaSeqMetrics Loaded 58279 genes. INFO 2026-06-03 20:05:12 SinglePassSamProgram Processed 1,000,000 records. Elapsed time: 00:00:17s. Time for last 1,000,000: 17s. Last read position: chr1:1,085,957 INFO 2026-06-03 20:05:30 SinglePassSamProgram Processed 2,000,000 records. Elapsed time: 00:00:34s. Time for last 1,000,000: 17s. Last read position: chr1:1,485,821 INFO 2026-06-03 20:05:45 SinglePassSamProgram Processed 3,000,000 records. Elapsed time: 00:00:49s. Time for last 1,000,000: 14s. Last read position: chr1:2,229,228 INFO 2026-06-03 20:06:02 SinglePassSamProgram Processed 4,000,000 records. Elapsed time: 00:01:07s. Time for last 1,000,000: 17s. Last read position: chr1:6,192,975 INFO 2026-06-03 20:06:15 SinglePassSamProgram Processed 5,000,000 records. Elapsed time: 00:01:20s. Time for last 1,000,000: 12s. Last read position: chr1:8,361,275 INFO 2026-06-03 20:06:29 SinglePassSamProgram Processed 6,000,000 records. Elapsed time: 00:01:34s. Time for last 1,000,000: 14s. Last read position: chr1:10,151,335 INFO 2026-06-03 20:06:48 SinglePassSamProgram Processed 7,000,000 records. Elapsed time: 00:01:52s. Time for last 1,000,000: 18s. Last read position: chr1:11,675,092 INFO 2026-06-03 20:07:14 SinglePassSamProgram Processed 8,000,000 records. Elapsed time: 00:02:18s. Time for last 1,000,000: 25s. Last read position: chr1:12,568,311 INFO 2026-06-03 20:07:24 SinglePassSamProgram Processed 9,000,000 records. Elapsed time: 00:02:29s. Time for last 1,000,000: 10s. Last read position: chr1:16,125,207 INFO 2026-06-03 20:07:38 SinglePassSamProgram Processed 10,000,000 records. Elapsed time: 00:02:42s. Time for last 1,000,000: 13s. Last read position: chr1:19,074,844 INFO 2026-06-03 20:07:55 SinglePassSamProgram Processed 11,000,000 records. Elapsed time: 00:02:59s. Time for last 1,000,000: 17s. Last read position: chr1:19,814,767 INFO 2026-06-03 20:08:10 SinglePassSamProgram Processed 12,000,000 records. Elapsed time: 00:03:15s. Time for last 1,000,000: 15s. Last read position: chr1:21,085,889 INFO 2026-06-03 20:08:33 SinglePassSamProgram Processed 13,000,000 records. Elapsed time: 00:03:38s. Time for last 1,000,000: 22s. Last read position: chr1:21,872,356 INFO 2026-06-03 20:08:44 SinglePassSamProgram Processed 14,000,000 records. Elapsed time: 00:03:48s. Time for last 1,000,000: 10s. Last read position: chr1:23,059,072 INFO 2026-06-03 20:08:52 SinglePassSamProgram Processed 15,000,000 records. Elapsed time: 00:03:56s. Time for last 1,000,000: 7s. Last read position: chr1:24,120,967 INFO 2026-06-03 20:09:02 SinglePassSamProgram Processed 16,000,000 records. Elapsed time: 00:04:06s. Time for last 1,000,000: 9s. Last read position: chr1:26,475,065 INFO 2026-06-03 20:09:12 SinglePassSamProgram Processed 17,000,000 records. Elapsed time: 00:04:16s. Time for last 1,000,000: 10s. Last read position: chr1:27,551,519 INFO 2026-06-03 20:09:29 SinglePassSamProgram Processed 18,000,000 records. Elapsed time: 00:04:34s. Time for last 1,000,000: 17s. Last read position: chr1:31,059,492 INFO 2026-06-03 20:09:50 SinglePassSamProgram Processed 19,000,000 records. Elapsed time: 00:04:54s. Time for last 1,000,000: 20s. Last read position: chr1:32,324,534 INFO 2026-06-03 20:10:00 SinglePassSamProgram Processed 20,000,000 records. Elapsed time: 00:05:04s. Time for last 1,000,000: 10s. Last read position: chr1:34,992,294 INFO 2026-06-03 20:10:11 SinglePassSamProgram Processed 21,000,000 records. Elapsed time: 00:05:16s. Time for last 1,000,000: 11s. Last read position: chr1:37,509,294 INFO 2026-06-03 20:11:26 SinglePassSamProgram Processed 22,000,000 records. Elapsed time: 00:06:31s. Time for last 1,000,000: 75s. Last read position: chr1:39,485,618 INFO 2026-06-03 20:11:44 SinglePassSamProgram Processed 23,000,000 records. Elapsed time: 00:06:49s. Time for last 1,000,000: 17s. Last read position: chr1:42,683,402 INFO 2026-06-03 20:12:00 SinglePassSamProgram Processed 24,000,000 records. Elapsed time: 00:07:04s. Time for last 1,000,000: 15s. Last read position: chr1:43,620,841 INFO 2026-06-03 20:12:10 SinglePassSamProgram Processed 25,000,000 records. Elapsed time: 00:07:14s. Time for last 1,000,000: 10s. Last read position: chr1:46,032,251 INFO 2026-06-03 20:12:24 SinglePassSamProgram Processed 26,000,000 records. Elapsed time: 00:07:28s. Time for last 1,000,000: 13s. Last read position: chr1:53,038,953 INFO 2026-06-03 20:12:38 SinglePassSamProgram Processed 27,000,000 records. Elapsed time: 00:07:42s. Time for last 1,000,000: 14s. Last read position: chr1:64,673,208 INFO 2026-06-03 20:12:49 SinglePassSamProgram Processed 28,000,000 records. Elapsed time: 00:07:54s. Time for last 1,000,000: 11s. Last read position: chr1:78,046,140 INFO 2026-06-03 20:12:57 SinglePassSamProgram Processed 29,000,000 records. Elapsed time: 00:08:01s. Time for last 1,000,000: 7s. Last read position: chr1:94,179,759 INFO 2026-06-03 20:13:07 SinglePassSamProgram Processed 30,000,000 records. Elapsed time: 00:08:11s. Time for last 1,000,000: 9s. Last read position: chr1:108,992,692 INFO 2026-06-03 20:13:17 SinglePassSamProgram Processed 31,000,000 records. Elapsed time: 00:08:22s. Time for last 1,000,000: 10s. Last read position: chr1:111,756,178 INFO 2026-06-03 20:13:26 SinglePassSamProgram Processed 32,000,000 records. Elapsed time: 00:08:30s. Time for last 1,000,000: 8s. Last read position: chr1:114,430,898 INFO 2026-06-03 20:13:39 SinglePassSamProgram Processed 33,000,000 records. Elapsed time: 00:08:43s. Time for last 1,000,000: 13s. Last read position: chr1:116,397,901 INFO 2026-06-03 20:13:47 SinglePassSamProgram Processed 34,000,000 records. Elapsed time: 00:08:51s. Time for last 1,000,000: 8s. Last read position: chr1:119,798,540 INFO 2026-06-03 20:13:52 SinglePassSamProgram Processed 35,000,000 records. Elapsed time: 00:08:56s. Time for last 1,000,000: 5s. Last read position: chr1:143,905,660 INFO 2026-06-03 20:13:57 SinglePassSamProgram Processed 36,000,000 records. Elapsed time: 00:09:02s. Time for last 1,000,000: 5s. Last read position: chr1:147,167,831 INFO 2026-06-03 20:14:10 SinglePassSamProgram Processed 37,000,000 records. Elapsed time: 00:09:14s. Time for last 1,000,000: 12s. Last read position: chr1:149,480,787 INFO 2026-06-03 20:14:13 SinglePassSamProgram Processed 38,000,000 records. Elapsed time: 00:09:17s. Time for last 1,000,000: 3s. Last read position: chr1:150,346,082 INFO 2026-06-03 20:14:21 SinglePassSamProgram Processed 39,000,000 records. Elapsed time: 00:09:25s. Time for last 1,000,000: 8s. Last read position: chr1:151,302,282 INFO 2026-06-03 20:14:29 SinglePassSamProgram Processed 40,000,000 records. Elapsed time: 00:09:33s. Time for last 1,000,000: 7s. Last read position: chr1:153,614,917 INFO 2026-06-03 20:14:38 SinglePassSamProgram Processed 41,000,000 records. Elapsed time: 00:09:42s. Time for last 1,000,000: 9s. Last read position: chr1:154,157,659 INFO 2026-06-03 20:14:55 SinglePassSamProgram Processed 42,000,000 records. Elapsed time: 00:09:59s. Time for last 1,000,000: 17s. Last read position: chr1:154,405,599 INFO 2026-06-03 20:15:19 SinglePassSamProgram Processed 43,000,000 records. Elapsed time: 00:10:24s. Time for last 1,000,000: 24s. Last read position: chr1:155,062,256 INFO 2026-06-03 20:15:43 SinglePassSamProgram Processed 44,000,000 records. Elapsed time: 00:10:47s. Time for last 1,000,000: 23s. Last read position: chr1:155,616,196 INFO 2026-06-03 20:15:57 SinglePassSamProgram Processed 45,000,000 records. Elapsed time: 00:11:01s. Time for last 1,000,000: 13s. Last read position: chr1:156,114,844 INFO 2026-06-03 20:16:21 SinglePassSamProgram Processed 46,000,000 records. Elapsed time: 00:11:25s. Time for last 1,000,000: 24s. Last read position: chr1:156,293,492 INFO 2026-06-03 20:16:30 SinglePassSamProgram Processed 47,000,000 records. Elapsed time: 00:11:34s. Time for last 1,000,000: 8s. Last read position: chr1:158,944,934 INFO 2026-06-03 20:16:46 SinglePassSamProgram Processed 48,000,000 records. Elapsed time: 00:11:50s. Time for last 1,000,000: 15s. Last read position: chr1:161,209,244 INFO 2026-06-03 20:17:00 SinglePassSamProgram Processed 49,000,000 records. Elapsed time: 00:12:04s. Time for last 1,000,000: 14s. Last read position: chr1:167,553,522 INFO 2026-06-03 20:17:04 SinglePassSamProgram Processed 50,000,000 records. Elapsed time: 00:12:08s. Time for last 1,000,000: 3s. Last read position: chr1:169,525,905 INFO 2026-06-03 20:17:10 SinglePassSamProgram Processed 51,000,000 records. Elapsed time: 00:12:15s. Time for last 1,000,000: 6s. Last read position: chr1:171,523,344 INFO 2026-06-03 20:17:24 SinglePassSamProgram Processed 52,000,000 records. Elapsed time: 00:12:29s. Time for last 1,000,000: 14s. Last read position: chr1:175,160,147 INFO 2026-06-03 20:17:31 SinglePassSamProgram Processed 53,000,000 records. Elapsed time: 00:12:36s. Time for last 1,000,000: 7s. Last read position: chr1:182,386,349 INFO 2026-06-03 20:17:39 SinglePassSamProgram Processed 54,000,000 records. Elapsed time: 00:12:44s. Time for last 1,000,000: 7s. Last read position: chr1:185,308,840 INFO 2026-06-03 20:17:50 SinglePassSamProgram Processed 55,000,000 records. Elapsed time: 00:12:54s. Time for last 1,000,000: 10s. Last read position: chr1:197,103,016 INFO 2026-06-03 20:17:58 SinglePassSamProgram Processed 56,000,000 records. Elapsed time: 00:13:02s. Time for last 1,000,000: 8s. Last read position: chr1:201,783,458 INFO 2026-06-03 20:18:10 SinglePassSamProgram Processed 57,000,000 records. Elapsed time: 00:13:15s. Time for last 1,000,000: 12s. Last read position: chr1:203,798,355 INFO 2026-06-03 20:18:22 SinglePassSamProgram Processed 58,000,000 records. Elapsed time: 00:13:27s. Time for last 1,000,000: 12s. Last read position: chr1:204,486,996 INFO 2026-06-03 20:18:28 SinglePassSamProgram Processed 59,000,000 records. Elapsed time: 00:13:32s. Time for last 1,000,000: 5s. Last read position: chr1:206,939,170 INFO 2026-06-03 20:18:38 SinglePassSamProgram Processed 60,000,000 records. Elapsed time: 00:13:42s. Time for last 1,000,000: 10s. Last read position: chr1:209,618,532 INFO 2026-06-03 20:18:44 SinglePassSamProgram Processed 61,000,000 records. Elapsed time: 00:13:48s. Time for last 1,000,000: 5s. Last read position: chr1:214,642,260 INFO 2026-06-03 20:18:51 SinglePassSamProgram Processed 62,000,000 records. Elapsed time: 00:13:55s. Time for last 1,000,000: 6s. Last read position: chr1:222,749,993 INFO 2026-06-03 20:19:00 SinglePassSamProgram Processed 63,000,000 records. Elapsed time: 00:14:05s. Time for last 1,000,000: 9s. Last read position: chr1:225,418,160 INFO 2026-06-03 20:19:08 SinglePassSamProgram Processed 64,000,000 records. Elapsed time: 00:14:13s. Time for last 1,000,000: 8s. Last read position: chr1:226,982,677 INFO 2026-06-03 20:19:25 SinglePassSamProgram Processed 65,000,000 records. Elapsed time: 00:14:30s. Time for last 1,000,000: 16s. Last read position: chr1:230,178,250 INFO 2026-06-03 20:19:33 SinglePassSamProgram Processed 66,000,000 records. Elapsed time: 00:14:38s. Time for last 1,000,000: 7s. Last read position: chr1:234,608,971 INFO 2026-06-03 20:19:51 SinglePassSamProgram Processed 67,000,000 records. Elapsed time: 00:14:55s. Time for last 1,000,000: 17s. Last read position: chr1:243,214,270 INFO 2026-06-03 20:20:04 SinglePassSamProgram Processed 68,000,000 records. Elapsed time: 00:15:08s. Time for last 1,000,000: 12s. Last read position: chr1:248,916,648 INFO 2026-06-03 20:20:13 SinglePassSamProgram Processed 69,000,000 records. Elapsed time: 00:15:17s. Time for last 1,000,000: 9s. Last read position: chr2:15,558,580 INFO 2026-06-03 20:20:24 SinglePassSamProgram Processed 70,000,000 records. Elapsed time: 00:15:28s. Time for last 1,000,000: 10s. Last read position: chr2:26,375,044 INFO 2026-06-03 20:20:32 SinglePassSamProgram Processed 71,000,000 records. Elapsed time: 00:15:36s. Time for last 1,000,000: 8s. Last read position: chr2:28,925,079 INFO 2026-06-03 20:20:39 SinglePassSamProgram Processed 72,000,000 records. Elapsed time: 00:15:43s. Time for last 1,000,000: 6s. Last read position: chr2:32,916,262 INFO 2026-06-03 20:20:45 SinglePassSamProgram Processed 73,000,000 records. Elapsed time: 00:15:49s. Time for last 1,000,000: 5s. Last read position: chr2:32,916,370 INFO 2026-06-03 20:20:46 SinglePassSamProgram Processed 74,000,000 records. Elapsed time: 00:15:50s. Time for last 1,000,000: 1s. Last read position: chr2:32,916,424 INFO 2026-06-03 20:20:54 SinglePassSamProgram Processed 75,000,000 records. Elapsed time: 00:15:58s. Time for last 1,000,000: 7s. Last read position: chr2:42,303,318 INFO 2026-06-03 20:21:05 SinglePassSamProgram Processed 76,000,000 records. Elapsed time: 00:16:10s. Time for last 1,000,000: 11s. Last read position: chr2:47,160,706 INFO 2026-06-03 20:21:14 SinglePassSamProgram Processed 77,000,000 records. Elapsed time: 00:16:18s. Time for last 1,000,000: 8s. Last read position: chr2:54,616,242 INFO 2026-06-03 20:21:27 SinglePassSamProgram Processed 78,000,000 records. Elapsed time: 00:16:31s. Time for last 1,000,000: 13s. Last read position: chr2:55,026,444 INFO 2026-06-03 20:21:46 SinglePassSamProgram Processed 79,000,000 records. Elapsed time: 00:16:51s. Time for last 1,000,000: 19s. Last read position: chr2:61,350,290 INFO 2026-06-03 20:22:07 SinglePassSamProgram Processed 80,000,000 records. Elapsed time: 00:17:11s. Time for last 1,000,000: 20s. Last read position: chr2:65,313,651 INFO 2026-06-03 20:22:23 SinglePassSamProgram Processed 81,000,000 records. Elapsed time: 00:17:27s. Time for last 1,000,000: 16s. Last read position: chr2:70,981,887 INFO 2026-06-03 20:22:33 SinglePassSamProgram Processed 82,000,000 records. Elapsed time: 00:17:37s. Time for last 1,000,000: 9s. Last read position: chr2:74,209,886 INFO 2026-06-03 20:22:42 SinglePassSamProgram Processed 83,000,000 records. Elapsed time: 00:17:46s. Time for last 1,000,000: 8s. Last read position: chr2:84,423,717 INFO 2026-06-03 20:22:48 SinglePassSamProgram Processed 84,000,000 records. Elapsed time: 00:17:53s. Time for last 1,000,000: 6s. Last read position: chr2:86,170,809 INFO 2026-06-03 20:22:53 SinglePassSamProgram Processed 85,000,000 records. Elapsed time: 00:17:57s. Time for last 1,000,000: 4s. Last read position: chr2:95,825,381 INFO 2026-06-03 20:23:05 SinglePassSamProgram Processed 86,000,000 records. Elapsed time: 00:18:09s. Time for last 1,000,000: 11s. Last read position: chr2:95,915,995 INFO 2026-06-03 20:23:17 SinglePassSamProgram Processed 87,000,000 records. Elapsed time: 00:18:22s. Time for last 1,000,000: 12s. Last read position: chr2:96,817,295 INFO 2026-06-03 20:23:25 SinglePassSamProgram Processed 88,000,000 records. Elapsed time: 00:18:29s. Time for last 1,000,000: 7s. Last read position: chr2:98,797,474 INFO 2026-06-03 20:23:35 SinglePassSamProgram Processed 89,000,000 records. Elapsed time: 00:18:39s. Time for last 1,000,000: 9s. Last read position: chr2:105,049,256 INFO 2026-06-03 20:23:39 SinglePassSamProgram Processed 90,000,000 records. Elapsed time: 00:18:43s. Time for last 1,000,000: 4s. Last read position: chr2:108,719,676 INFO 2026-06-03 20:23:44 SinglePassSamProgram Processed 91,000,000 records. Elapsed time: 00:18:48s. Time for last 1,000,000: 4s. Last read position: chr2:108,765,785 INFO 2026-06-03 20:23:49 SinglePassSamProgram Processed 92,000,000 records. Elapsed time: 00:18:53s. Time for last 1,000,000: 5s. Last read position: chr2:109,836,445 INFO 2026-06-03 20:23:54 SinglePassSamProgram Processed 93,000,000 records. Elapsed time: 00:18:58s. Time for last 1,000,000: 4s. Last read position: chr2:112,390,143 INFO 2026-06-03 20:23:59 SinglePassSamProgram Processed 94,000,000 records. Elapsed time: 00:19:04s. Time for last 1,000,000: 5s. Last read position: chr2:127,050,808 INFO 2026-06-03 20:24:11 SinglePassSamProgram Processed 95,000,000 records. Elapsed time: 00:19:15s. Time for last 1,000,000: 11s. Last read position: chr2:135,153,679 INFO 2026-06-03 20:24:21 SinglePassSamProgram Processed 96,000,000 records. Elapsed time: 00:19:26s. Time for last 1,000,000: 10s. Last read position: chr2:159,178,809 INFO 2026-06-03 20:24:35 SinglePassSamProgram Processed 97,000,000 records. Elapsed time: 00:19:40s. Time for last 1,000,000: 13s. Last read position: chr2:171,517,648 INFO 2026-06-03 20:24:48 SinglePassSamProgram Processed 98,000,000 records. Elapsed time: 00:19:52s. Time for last 1,000,000: 12s. Last read position: chr2:178,547,967 INFO 2026-06-03 20:25:18 SinglePassSamProgram Processed 99,000,000 records. Elapsed time: 00:20:22s. Time for last 1,000,000: 29s. Last read position: chr2:188,998,269 INFO 2026-06-03 20:25:30 SinglePassSamProgram Processed 100,000,000 records. Elapsed time: 00:20:34s. Time for last 1,000,000: 12s. Last read position: chr2:190,982,389 INFO 2026-06-03 20:25:46 SinglePassSamProgram Processed 101,000,000 records. Elapsed time: 00:20:50s. Time for last 1,000,000: 15s. Last read position: chr2:201,286,458 INFO 2026-06-03 20:26:04 SinglePassSamProgram Processed 102,000,000 records. Elapsed time: 00:21:09s. Time for last 1,000,000: 18s. Last read position: chr2:210,016,514 INFO 2026-06-03 20:26:23 SinglePassSamProgram Processed 103,000,000 records. Elapsed time: 00:21:28s. Time for last 1,000,000: 19s. Last read position: chr2:215,379,128 INFO 2026-06-03 20:27:15 SinglePassSamProgram Processed 104,000,000 records. Elapsed time: 00:22:19s. Time for last 1,000,000: 51s. Last read position: chr2:215,409,597 INFO 2026-06-03 20:28:07 SinglePassSamProgram Processed 105,000,000 records. Elapsed time: 00:23:11s. Time for last 1,000,000: 52s. Last read position: chr2:216,679,022 INFO 2026-06-03 20:28:18 SinglePassSamProgram Processed 106,000,000 records. Elapsed time: 00:23:22s. Time for last 1,000,000: 11s. Last read position: chr2:219,250,961 INFO 2026-06-03 20:28:32 SinglePassSamProgram Processed 107,000,000 records. Elapsed time: 00:23:36s. Time for last 1,000,000: 13s. Last read position: chr2:230,400,952 INFO 2026-06-03 20:28:54 SinglePassSamProgram Processed 108,000,000 records. Elapsed time: 00:23:58s. Time for last 1,000,000: 22s. Last read position: chr2:233,456,953 INFO 2026-06-03 20:29:13 SinglePassSamProgram Processed 109,000,000 records. Elapsed time: 00:24:17s. Time for last 1,000,000: 18s. Last read position: chr2:238,255,908 INFO 2026-06-03 20:29:30 SinglePassSamProgram Processed 110,000,000 records. Elapsed time: 00:24:34s. Time for last 1,000,000: 16s. Last read position: chr3:4,376,335 INFO 2026-06-03 20:29:47 SinglePassSamProgram Processed 111,000,000 records. Elapsed time: 00:24:51s. Time for last 1,000,000: 17s. Last read position: chr3:12,660,905 INFO 2026-06-03 20:29:55 SinglePassSamProgram Processed 112,000,000 records. Elapsed time: 00:24:59s. Time for last 1,000,000: 8s. Last read position: chr3:25,618,807 INFO 2026-06-03 20:30:08 SinglePassSamProgram Processed 113,000,000 records. Elapsed time: 00:25:12s. Time for last 1,000,000: 13s. Last read position: chr3:38,005,802 INFO 2026-06-03 20:30:31 SinglePassSamProgram Processed 114,000,000 records. Elapsed time: 00:25:35s. Time for last 1,000,000: 22s. Last read position: chr3:41,898,443 INFO 2026-06-03 20:30:42 SinglePassSamProgram Processed 115,000,000 records. Elapsed time: 00:25:47s. Time for last 1,000,000: 11s. Last read position: chr3:47,008,322 INFO 2026-06-03 20:30:56 SinglePassSamProgram Processed 116,000,000 records. Elapsed time: 00:26:00s. Time for last 1,000,000: 13s. Last read position: chr3:48,580,882 INFO 2026-06-03 20:31:11 SinglePassSamProgram Processed 117,000,000 records. Elapsed time: 00:26:15s. Time for last 1,000,000: 14s. Last read position: chr3:49,360,289 INFO 2026-06-03 20:31:22 SinglePassSamProgram Processed 118,000,000 records. Elapsed time: 00:26:26s. Time for last 1,000,000: 11s. Last read position: chr3:51,419,856 INFO 2026-06-03 20:31:34 SinglePassSamProgram Processed 119,000,000 records. Elapsed time: 00:26:38s. Time for last 1,000,000: 11s. Last read position: chr3:52,692,884 INFO 2026-06-03 20:31:50 SinglePassSamProgram Processed 120,000,000 records. Elapsed time: 00:26:54s. Time for last 1,000,000: 16s. Last read position: chr3:58,149,901 INFO 2026-06-03 20:32:03 SinglePassSamProgram Processed 121,000,000 records. Elapsed time: 00:27:08s. Time for last 1,000,000: 13s. Last read position: chr3:69,181,237 INFO 2026-06-03 20:32:20 SinglePassSamProgram Processed 122,000,000 records. Elapsed time: 00:27:24s. Time for last 1,000,000: 16s. Last read position: chr3:100,728,758 INFO 2026-06-03 20:32:31 SinglePassSamProgram Processed 123,000,000 records. Elapsed time: 00:27:36s. Time for last 1,000,000: 11s. Last read position: chr3:113,655,869 INFO 2026-06-03 20:32:39 SinglePassSamProgram Processed 124,000,000 records. Elapsed time: 00:27:43s. Time for last 1,000,000: 7s. Last read position: chr3:121,719,679 INFO 2026-06-03 20:32:47 SinglePassSamProgram Processed 125,000,000 records. Elapsed time: 00:27:51s. Time for last 1,000,000: 7s. Last read position: chr3:125,013,731 INFO 2026-06-03 20:32:53 SinglePassSamProgram Processed 126,000,000 records. Elapsed time: 00:27:58s. Time for last 1,000,000: 6s. Last read position: chr3:128,798,030 INFO 2026-06-03 20:33:08 SinglePassSamProgram Processed 127,000,000 records. Elapsed time: 00:28:12s. Time for last 1,000,000: 14s. Last read position: chr3:131,471,174 INFO 2026-06-03 20:33:21 SinglePassSamProgram Processed 128,000,000 records. Elapsed time: 00:28:25s. Time for last 1,000,000: 13s. Last read position: chr3:139,561,063 INFO 2026-06-03 20:33:33 SinglePassSamProgram Processed 129,000,000 records. Elapsed time: 00:28:37s. Time for last 1,000,000: 11s. Last read position: chr3:150,410,383 INFO 2026-06-03 20:33:43 SinglePassSamProgram Processed 130,000,000 records. Elapsed time: 00:28:47s. Time for last 1,000,000: 9s. Last read position: chr3:170,129,236 INFO 2026-06-03 20:33:55 SinglePassSamProgram Processed 131,000,000 records. Elapsed time: 00:28:59s. Time for last 1,000,000: 12s. Last read position: chr3:184,186,844 INFO 2026-06-03 20:34:17 SinglePassSamProgram Processed 132,000,000 records. Elapsed time: 00:29:22s. Time for last 1,000,000: 22s. Last read position: chr3:186,791,751 INFO 2026-06-03 20:34:28 SinglePassSamProgram Processed 133,000,000 records. Elapsed time: 00:29:32s. Time for last 1,000,000: 10s. Last read position: chr3:195,726,061 INFO 2026-06-03 20:34:49 SinglePassSamProgram Processed 134,000,000 records. Elapsed time: 00:29:53s. Time for last 1,000,000: 21s. Last read position: chr4:443,867 INFO 2026-06-03 20:34:58 SinglePassSamProgram Processed 135,000,000 records. Elapsed time: 00:30:03s. Time for last 1,000,000: 9s. Last read position: chr4:1,225,366 INFO 2026-06-03 20:35:10 SinglePassSamProgram Processed 136,000,000 records. Elapsed time: 00:30:14s. Time for last 1,000,000: 11s. Last read position: chr4:2,625,309 INFO 2026-06-03 20:35:27 SinglePassSamProgram Processed 137,000,000 records. Elapsed time: 00:30:32s. Time for last 1,000,000: 17s. Last read position: chr4:6,291,266 INFO 2026-06-03 20:35:34 SinglePassSamProgram Processed 138,000,000 records. Elapsed time: 00:30:39s. Time for last 1,000,000: 7s. Last read position: chr4:10,077,783 INFO 2026-06-03 20:35:50 SinglePassSamProgram Processed 139,000,000 records. Elapsed time: 00:30:55s. Time for last 1,000,000: 15s. Last read position: chr4:20,596,412 INFO 2026-06-03 20:36:01 SinglePassSamProgram Processed 140,000,000 records. Elapsed time: 00:31:05s. Time for last 1,000,000: 10s. Last read position: chr4:37,590,313 INFO 2026-06-03 20:36:09 SinglePassSamProgram Processed 141,000,000 records. Elapsed time: 00:31:13s. Time for last 1,000,000: 8s. Last read position: chr4:41,646,550 INFO 2026-06-03 20:36:23 SinglePassSamProgram Processed 142,000,000 records. Elapsed time: 00:31:27s. Time for last 1,000,000: 14s. Last read position: chr4:54,277,448 INFO 2026-06-03 20:36:30 SinglePassSamProgram Processed 143,000,000 records. Elapsed time: 00:31:35s. Time for last 1,000,000: 7s. Last read position: chr4:68,337,341 INFO 2026-06-03 20:36:43 SinglePassSamProgram Processed 144,000,000 records. Elapsed time: 00:31:47s. Time for last 1,000,000: 12s. Last read position: chr4:76,144,252 INFO 2026-06-03 20:36:51 SinglePassSamProgram Processed 145,000,000 records. Elapsed time: 00:31:56s. Time for last 1,000,000: 8s. Last read position: chr4:82,454,756 INFO 2026-06-03 20:37:08 SinglePassSamProgram Processed 146,000,000 records. Elapsed time: 00:32:12s. Time for last 1,000,000: 16s. Last read position: chr4:93,110,784 INFO 2026-06-03 20:37:18 SinglePassSamProgram Processed 147,000,000 records. Elapsed time: 00:32:22s. Time for last 1,000,000: 10s. Last read position: chr4:112,788,692 INFO 2026-06-03 20:37:32 SinglePassSamProgram Processed 148,000,000 records. Elapsed time: 00:32:36s. Time for last 1,000,000: 13s. Last read position: chr4:139,698,490 INFO 2026-06-03 20:37:49 SinglePassSamProgram Processed 149,000,000 records. Elapsed time: 00:32:53s. Time for last 1,000,000: 16s. Last read position: chr4:151,175,450 INFO 2026-06-03 20:38:03 SinglePassSamProgram Processed 150,000,000 records. Elapsed time: 00:33:07s. Time for last 1,000,000: 14s. Last read position: chr4:177,310,034 INFO 2026-06-03 20:38:14 SinglePassSamProgram Processed 151,000,000 records. Elapsed time: 00:33:18s. Time for last 1,000,000: 10s. Last read position: chr5:314,451 INFO 2026-06-03 20:38:21 SinglePassSamProgram Processed 152,000,000 records. Elapsed time: 00:33:25s. Time for last 1,000,000: 7s. Last read position: chr5:1,594,479 INFO 2026-06-03 20:38:30 SinglePassSamProgram Processed 153,000,000 records. Elapsed time: 00:33:34s. Time for last 1,000,000: 8s. Last read position: chr5:10,680,963 INFO 2026-06-03 20:38:53 SinglePassSamProgram Processed 154,000,000 records. Elapsed time: 00:33:57s. Time for last 1,000,000: 22s. Last read position: chr5:14,487,684 INFO 2026-06-03 20:39:08 SinglePassSamProgram Processed 155,000,000 records. Elapsed time: 00:34:12s. Time for last 1,000,000: 15s. Last read position: chr5:32,591,570 INFO 2026-06-03 20:39:19 SinglePassSamProgram Processed 156,000,000 records. Elapsed time: 00:34:23s. Time for last 1,000,000: 11s. Last read position: chr5:40,834,180 INFO 2026-06-03 20:39:30 SinglePassSamProgram Processed 157,000,000 records. Elapsed time: 00:34:35s. Time for last 1,000,000: 11s. Last read position: chr5:55,941,806 INFO 2026-06-03 20:39:46 SinglePassSamProgram Processed 158,000,000 records. Elapsed time: 00:34:50s. Time for last 1,000,000: 15s. Last read position: chr5:68,279,648 INFO 2026-06-03 20:39:52 SinglePassSamProgram Processed 159,000,000 records. Elapsed time: 00:34:56s. Time for last 1,000,000: 6s. Last read position: chr5:72,223,692 INFO 2026-06-03 20:40:02 SinglePassSamProgram Processed 160,000,000 records. Elapsed time: 00:35:07s. Time for last 1,000,000: 10s. Last read position: chr5:79,641,122 INFO 2026-06-03 20:40:12 SinglePassSamProgram Processed 161,000,000 records. Elapsed time: 00:35:16s. Time for last 1,000,000: 9s. Last read position: chr5:95,816,531 INFO 2026-06-03 20:40:38 SinglePassSamProgram Processed 162,000,000 records. Elapsed time: 00:35:43s. Time for last 1,000,000: 26s. Last read position: chr5:119,134,051 INFO 2026-06-03 20:40:53 SinglePassSamProgram Processed 163,000,000 records. Elapsed time: 00:35:57s. Time for last 1,000,000: 14s. Last read position: chr5:132,824,362 INFO 2026-06-03 20:41:01 SinglePassSamProgram Processed 164,000,000 records. Elapsed time: 00:36:05s. Time for last 1,000,000: 7s. Last read position: chr5:138,467,328 INFO 2026-06-03 20:41:14 SinglePassSamProgram Processed 165,000,000 records. Elapsed time: 00:36:18s. Time for last 1,000,000: 12s. Last read position: chr5:140,848,559 INFO 2026-06-03 20:41:15 SinglePassSamProgram Processed 166,000,000 records. Elapsed time: 00:36:20s. Time for last 1,000,000: 1s. Last read position: chr5:141,410,142 INFO 2026-06-03 20:41:28 SinglePassSamProgram Processed 167,000,000 records. Elapsed time: 00:36:33s. Time for last 1,000,000: 12s. Last read position: chr5:147,453,557 INFO 2026-06-03 20:41:36 SinglePassSamProgram Processed 168,000,000 records. Elapsed time: 00:36:41s. Time for last 1,000,000: 8s. Last read position: chr5:150,375,080 INFO 2026-06-03 20:41:44 SinglePassSamProgram Processed 169,000,000 records. Elapsed time: 00:36:49s. Time for last 1,000,000: 7s. Last read position: chr5:150,649,403 INFO 2026-06-03 20:41:56 SinglePassSamProgram Processed 170,000,000 records. Elapsed time: 00:37:00s. Time for last 1,000,000: 11s. Last read position: chr5:159,168,872 INFO 2026-06-03 20:42:08 SinglePassSamProgram Processed 171,000,000 records. Elapsed time: 00:37:13s. Time for last 1,000,000: 12s. Last read position: chr5:171,392,744 INFO 2026-06-03 20:42:25 SinglePassSamProgram Processed 172,000,000 records. Elapsed time: 00:37:30s. Time for last 1,000,000: 16s. Last read position: chr5:176,578,530 INFO 2026-06-03 20:42:35 SinglePassSamProgram Processed 173,000,000 records. Elapsed time: 00:37:39s. Time for last 1,000,000: 9s. Last read position: chr5:179,591,620 INFO 2026-06-03 20:42:57 SinglePassSamProgram Processed 174,000,000 records. Elapsed time: 00:38:01s. Time for last 1,000,000: 21s. Last read position: chr5:179,825,165 INFO 2026-06-03 20:43:07 SinglePassSamProgram Processed 175,000,000 records. Elapsed time: 00:38:11s. Time for last 1,000,000: 10s. Last read position: chr5:181,242,169 INFO 2026-06-03 20:43:15 SinglePassSamProgram Processed 176,000,000 records. Elapsed time: 00:38:19s. Time for last 1,000,000: 8s. Last read position: chr6:7,246,996 INFO 2026-06-03 20:43:22 SinglePassSamProgram Processed 177,000,000 records. Elapsed time: 00:38:27s. Time for last 1,000,000: 7s. Last read position: chr6:17,850,357 INFO 2026-06-03 20:43:26 SinglePassSamProgram Processed 178,000,000 records. Elapsed time: 00:38:31s. Time for last 1,000,000: 3s. Last read position: chr6:26,370,522 INFO 2026-06-03 20:43:30 SinglePassSamProgram Processed 179,000,000 records. Elapsed time: 00:38:34s. Time for last 1,000,000: 3s. Last read position: chr6:29,942,552 INFO 2026-06-03 20:43:38 SinglePassSamProgram Processed 180,000,000 records. Elapsed time: 00:38:42s. Time for last 1,000,000: 7s. Last read position: chr6:30,897,399 INFO 2026-06-03 20:43:45 SinglePassSamProgram Processed 181,000,000 records. Elapsed time: 00:38:50s. Time for last 1,000,000: 7s. Last read position: chr6:31,639,174 INFO 2026-06-03 20:43:56 SinglePassSamProgram Processed 182,000,000 records. Elapsed time: 00:39:00s. Time for last 1,000,000: 10s. Last read position: chr6:31,963,817 INFO 2026-06-03 20:44:04 SinglePassSamProgram Processed 183,000,000 records. Elapsed time: 00:39:08s. Time for last 1,000,000: 8s. Last read position: chr6:32,978,338 INFO 2026-06-03 20:44:13 SinglePassSamProgram Processed 184,000,000 records. Elapsed time: 00:39:17s. Time for last 1,000,000: 8s. Last read position: chr6:33,788,792 INFO 2026-06-03 20:44:18 SinglePassSamProgram Processed 185,000,000 records. Elapsed time: 00:39:22s. Time for last 1,000,000: 5s. Last read position: chr6:36,985,911 INFO 2026-06-03 20:44:24 SinglePassSamProgram Processed 186,000,000 records. Elapsed time: 00:39:28s. Time for last 1,000,000: 5s. Last read position: chr6:43,007,412 INFO 2026-06-03 20:44:35 SinglePassSamProgram Processed 187,000,000 records. Elapsed time: 00:39:40s. Time for last 1,000,000: 11s. Last read position: chr6:44,154,089 INFO 2026-06-03 20:44:41 SinglePassSamProgram Processed 188,000,000 records. Elapsed time: 00:39:46s. Time for last 1,000,000: 5s. Last read position: chr6:52,995,754 INFO 2026-06-03 20:45:43 SinglePassSamProgram Processed 189,000,000 records. Elapsed time: 00:40:48s. Time for last 1,000,000: 62s. Last read position: chr6:57,190,567 INFO 2026-06-03 20:46:02 SinglePassSamProgram Processed 190,000,000 records. Elapsed time: 00:41:06s. Time for last 1,000,000: 18s. Last read position: chr6:78,998,287 INFO 2026-06-03 20:46:12 SinglePassSamProgram Processed 191,000,000 records. Elapsed time: 00:41:16s. Time for last 1,000,000: 9s. Last read position: chr6:89,713,271 INFO 2026-06-03 20:46:21 SinglePassSamProgram Processed 192,000,000 records. Elapsed time: 00:41:26s. Time for last 1,000,000: 9s. Last read position: chr6:110,960,587 INFO 2026-06-03 20:46:32 SinglePassSamProgram Processed 193,000,000 records. Elapsed time: 00:41:37s. Time for last 1,000,000: 11s. Last read position: chr6:129,638,598 INFO 2026-06-03 20:46:59 SinglePassSamProgram Processed 194,000,000 records. Elapsed time: 00:42:03s. Time for last 1,000,000: 26s. Last read position: chr6:136,278,082 INFO 2026-06-03 20:47:06 SinglePassSamProgram Processed 195,000,000 records. Elapsed time: 00:42:11s. Time for last 1,000,000: 7s. Last read position: chr6:138,943,895 INFO 2026-06-03 20:47:16 SinglePassSamProgram Processed 196,000,000 records. Elapsed time: 00:42:20s. Time for last 1,000,000: 9s. Last read position: chr6:148,519,659 INFO 2026-06-03 20:47:26 SinglePassSamProgram Processed 197,000,000 records. Elapsed time: 00:42:31s. Time for last 1,000,000: 10s. Last read position: chr6:156,779,298 INFO 2026-06-03 20:47:39 SinglePassSamProgram Processed 198,000,000 records. Elapsed time: 00:42:43s. Time for last 1,000,000: 12s. Last read position: chr6:158,770,864 INFO 2026-06-03 20:47:46 SinglePassSamProgram Processed 199,000,000 records. Elapsed time: 00:42:51s. Time for last 1,000,000: 7s. Last read position: chr6:160,061,876 INFO 2026-06-03 20:48:09 SinglePassSamProgram Processed 200,000,000 records. Elapsed time: 00:43:13s. Time for last 1,000,000: 22s. Last read position: chr6:169,225,225 INFO 2026-06-03 20:48:20 SinglePassSamProgram Processed 201,000,000 records. Elapsed time: 00:43:24s. Time for last 1,000,000: 11s. Last read position: chr7:1,495,472 INFO 2026-06-03 20:48:28 SinglePassSamProgram Processed 202,000,000 records. Elapsed time: 00:43:32s. Time for last 1,000,000: 7s. Last read position: chr7:5,527,185 INFO 2026-06-03 20:48:35 SinglePassSamProgram Processed 203,000,000 records. Elapsed time: 00:43:40s. Time for last 1,000,000: 7s. Last read position: chr7:6,751,296 INFO 2026-06-03 20:48:42 SinglePassSamProgram Processed 204,000,000 records. Elapsed time: 00:43:47s. Time for last 1,000,000: 6s. Last read position: chr7:23,786,440 INFO 2026-06-03 20:49:01 SinglePassSamProgram Processed 205,000,000 records. Elapsed time: 00:44:05s. Time for last 1,000,000: 18s. Last read position: chr7:36,155,167 INFO 2026-06-03 20:49:08 SinglePassSamProgram Processed 206,000,000 records. Elapsed time: 00:44:13s. Time for last 1,000,000: 7s. Last read position: chr7:44,121,876 INFO 2026-06-03 20:49:19 SinglePassSamProgram Processed 207,000,000 records. Elapsed time: 00:44:23s. Time for last 1,000,000: 10s. Last read position: chr7:47,415,131 INFO 2026-06-03 20:49:28 SinglePassSamProgram Processed 208,000,000 records. Elapsed time: 00:44:32s. Time for last 1,000,000: 9s. Last read position: chr7:64,978,340 INFO 2026-06-03 20:49:34 SinglePassSamProgram Processed 209,000,000 records. Elapsed time: 00:44:38s. Time for last 1,000,000: 5s. Last read position: chr7:73,065,546 INFO 2026-06-03 20:49:38 SinglePassSamProgram Processed 210,000,000 records. Elapsed time: 00:44:43s. Time for last 1,000,000: 4s. Last read position: chr7:73,831,177 INFO 2026-06-03 20:49:49 SinglePassSamProgram Processed 211,000,000 records. Elapsed time: 00:44:53s. Time for last 1,000,000: 10s. Last read position: chr7:75,149,102 INFO 2026-06-03 20:49:54 SinglePassSamProgram Processed 212,000,000 records. Elapsed time: 00:44:58s. Time for last 1,000,000: 5s. Last read position: chr7:76,048,188 INFO 2026-06-03 20:50:00 SinglePassSamProgram Processed 213,000,000 records. Elapsed time: 00:45:05s. Time for last 1,000,000: 6s. Last read position: chr7:87,188,283 INFO 2026-06-03 20:51:08 SinglePassSamProgram Processed 214,000,000 records. Elapsed time: 00:46:13s. Time for last 1,000,000: 68s. Last read position: chr7:92,235,959 INFO 2026-06-03 20:51:22 SinglePassSamProgram Processed 215,000,000 records. Elapsed time: 00:46:26s. Time for last 1,000,000: 13s. Last read position: chr7:95,434,889 INFO 2026-06-03 20:51:37 SinglePassSamProgram Processed 216,000,000 records. Elapsed time: 00:46:41s. Time for last 1,000,000: 15s. Last read position: chr7:99,049,670 INFO 2026-06-03 20:51:46 SinglePassSamProgram Processed 217,000,000 records. Elapsed time: 00:46:50s. Time for last 1,000,000: 8s. Last read position: chr7:100,024,241 INFO 2026-06-03 20:51:54 SinglePassSamProgram Processed 218,000,000 records. Elapsed time: 00:46:58s. Time for last 1,000,000: 8s. Last read position: chr7:100,555,658 INFO 2026-06-03 20:52:01 SinglePassSamProgram Processed 219,000,000 records. Elapsed time: 00:47:06s. Time for last 1,000,000: 7s. Last read position: chr7:100,960,611 INFO 2026-06-03 20:52:03 SinglePassSamProgram Processed 220,000,000 records. Elapsed time: 00:47:07s. Time for last 1,000,000: 1s. Last read position: chr7:100,998,805 INFO 2026-06-03 20:52:05 SinglePassSamProgram Processed 221,000,000 records. Elapsed time: 00:47:09s. Time for last 1,000,000: 1s. Last read position: chr7:101,034,289 INFO 2026-06-03 20:52:07 SinglePassSamProgram Processed 222,000,000 records. Elapsed time: 00:47:12s. Time for last 1,000,000: 2s. Last read position: chr7:101,089,381 INFO 2026-06-03 20:52:16 SinglePassSamProgram Processed 223,000,000 records. Elapsed time: 00:47:20s. Time for last 1,000,000: 8s. Last read position: chr7:102,555,967 INFO 2026-06-03 20:52:23 SinglePassSamProgram Processed 224,000,000 records. Elapsed time: 00:47:27s. Time for last 1,000,000: 7s. Last read position: chr7:105,112,806 INFO 2026-06-03 20:52:50 SinglePassSamProgram Processed 225,000,000 records. Elapsed time: 00:47:55s. Time for last 1,000,000: 27s. Last read position: chr7:112,450,567 INFO 2026-06-03 20:52:59 SinglePassSamProgram Processed 226,000,000 records. Elapsed time: 00:48:03s. Time for last 1,000,000: 8s. Last read position: chr7:127,887,932 INFO 2026-06-03 20:53:08 SinglePassSamProgram Processed 227,000,000 records. Elapsed time: 00:48:12s. Time for last 1,000,000: 8s. Last read position: chr7:135,165,492 INFO 2026-06-03 20:53:17 SinglePassSamProgram Processed 228,000,000 records. Elapsed time: 00:48:22s. Time for last 1,000,000: 9s. Last read position: chr7:141,652,834 INFO 2026-06-03 20:53:22 SinglePassSamProgram Processed 229,000,000 records. Elapsed time: 00:48:26s. Time for last 1,000,000: 4s. Last read position: chr7:144,364,308 INFO 2026-06-03 20:53:30 SinglePassSamProgram Processed 230,000,000 records. Elapsed time: 00:48:34s. Time for last 1,000,000: 7s. Last read position: chr7:151,081,808 INFO 2026-06-03 20:53:49 SinglePassSamProgram Processed 231,000,000 records. Elapsed time: 00:48:53s. Time for last 1,000,000: 19s. Last read position: chr7:158,739,040 INFO 2026-06-03 20:54:03 SinglePassSamProgram Processed 232,000,000 records. Elapsed time: 00:49:08s. Time for last 1,000,000: 14s. Last read position: chr8:17,721,681 INFO 2026-06-03 20:54:19 SinglePassSamProgram Processed 233,000,000 records. Elapsed time: 00:49:24s. Time for last 1,000,000: 16s. Last read position: chr8:22,283,152 INFO 2026-06-03 20:54:29 SinglePassSamProgram Processed 234,000,000 records. Elapsed time: 00:49:33s. Time for last 1,000,000: 9s. Last read position: chr8:23,568,248 INFO 2026-06-03 20:54:37 SinglePassSamProgram Processed 235,000,000 records. Elapsed time: 00:49:42s. Time for last 1,000,000: 8s. Last read position: chr8:37,697,398 INFO 2026-06-03 20:54:43 SinglePassSamProgram Processed 236,000,000 records. Elapsed time: 00:49:48s. Time for last 1,000,000: 6s. Last read position: chr8:38,338,558 INFO 2026-06-03 20:54:59 SinglePassSamProgram Processed 237,000,000 records. Elapsed time: 00:50:03s. Time for last 1,000,000: 15s. Last read position: chr8:38,836,113 INFO 2026-06-03 20:55:21 SinglePassSamProgram Processed 238,000,000 records. Elapsed time: 00:50:25s. Time for last 1,000,000: 22s. Last read position: chr8:42,870,078 INFO 2026-06-03 20:55:35 SinglePassSamProgram Processed 239,000,000 records. Elapsed time: 00:50:39s. Time for last 1,000,000: 13s. Last read position: chr8:53,999,951 INFO 2026-06-03 20:55:46 SinglePassSamProgram Processed 240,000,000 records. Elapsed time: 00:50:50s. Time for last 1,000,000: 11s. Last read position: chr8:61,681,004 INFO 2026-06-03 20:55:59 SinglePassSamProgram Processed 241,000,000 records. Elapsed time: 00:51:03s. Time for last 1,000,000: 12s. Last read position: chr8:73,291,875 INFO 2026-06-03 20:56:06 SinglePassSamProgram Processed 242,000,000 records. Elapsed time: 00:51:10s. Time for last 1,000,000: 7s. Last read position: chr8:91,960,199 INFO 2026-06-03 20:56:13 SinglePassSamProgram Processed 243,000,000 records. Elapsed time: 00:51:18s. Time for last 1,000,000: 7s. Last read position: chr8:98,041,771 INFO 2026-06-03 20:56:40 SinglePassSamProgram Processed 244,000,000 records. Elapsed time: 00:51:44s. Time for last 1,000,000: 26s. Last read position: chr8:100,717,868 INFO 2026-06-03 20:57:01 SinglePassSamProgram Processed 245,000,000 records. Elapsed time: 00:52:05s. Time for last 1,000,000: 21s. Last read position: chr8:108,214,633 INFO 2026-06-03 20:57:16 SinglePassSamProgram Processed 246,000,000 records. Elapsed time: 00:52:21s. Time for last 1,000,000: 15s. Last read position: chr8:122,953,424 INFO 2026-06-03 20:57:24 SinglePassSamProgram Processed 247,000,000 records. Elapsed time: 00:52:29s. Time for last 1,000,000: 7s. Last read position: chr8:127,738,860 INFO 2026-06-03 20:57:46 SinglePassSamProgram Processed 248,000,000 records. Elapsed time: 00:52:51s. Time for last 1,000,000: 22s. Last read position: chr8:141,218,570 INFO 2026-06-03 20:57:58 SinglePassSamProgram Processed 249,000,000 records. Elapsed time: 00:53:02s. Time for last 1,000,000: 11s. Last read position: chr8:143,614,427 INFO 2026-06-03 20:58:05 SinglePassSamProgram Processed 250,000,000 records. Elapsed time: 00:53:10s. Time for last 1,000,000: 7s. Last read position: chr8:143,858,228 INFO 2026-06-03 20:58:06 SinglePassSamProgram Processed 251,000,000 records. Elapsed time: 00:53:11s. Time for last 1,000,000: 0s. Last read position: chr8:143,859,075 INFO 2026-06-03 20:58:07 SinglePassSamProgram Processed 252,000,000 records. Elapsed time: 00:53:11s. Time for last 1,000,000: 0s. Last read position: chr8:143,860,311 INFO 2026-06-03 20:58:08 SinglePassSamProgram Processed 253,000,000 records. Elapsed time: 00:53:12s. Time for last 1,000,000: 0s. Last read position: chr8:143,861,230 INFO 2026-06-03 20:58:09 SinglePassSamProgram Processed 254,000,000 records. Elapsed time: 00:53:13s. Time for last 1,000,000: 0s. Last read position: chr8:143,861,964 INFO 2026-06-03 20:58:10 SinglePassSamProgram Processed 255,000,000 records. Elapsed time: 00:53:14s. Time for last 1,000,000: 0s. Last read position: chr8:143,862,887 INFO 2026-06-03 20:58:11 SinglePassSamProgram Processed 256,000,000 records. Elapsed time: 00:53:15s. Time for last 1,000,000: 1s. Last read position: chr8:143,863,644 INFO 2026-06-03 20:58:12 SinglePassSamProgram Processed 257,000,000 records. Elapsed time: 00:53:16s. Time for last 1,000,000: 0s. Last read position: chr8:143,864,639 INFO 2026-06-03 20:58:12 SinglePassSamProgram Processed 258,000,000 records. Elapsed time: 00:53:17s. Time for last 1,000,000: 0s. Last read position: chr8:143,865,455 INFO 2026-06-03 20:58:13 SinglePassSamProgram Processed 259,000,000 records. Elapsed time: 00:53:17s. Time for last 1,000,000: 0s. Last read position: chr8:143,866,305 INFO 2026-06-03 20:58:15 SinglePassSamProgram Processed 260,000,000 records. Elapsed time: 00:53:19s. Time for last 1,000,000: 1s. Last read position: chr8:143,916,635 INFO 2026-06-03 20:58:22 SinglePassSamProgram Processed 261,000,000 records. Elapsed time: 00:53:26s. Time for last 1,000,000: 7s. Last read position: chr8:143,927,725 INFO 2026-06-03 20:58:40 SinglePassSamProgram Processed 262,000,000 records. Elapsed time: 00:53:45s. Time for last 1,000,000: 18s. Last read position: chr8:144,180,452 INFO 2026-06-03 20:58:53 SinglePassSamProgram Processed 263,000,000 records. Elapsed time: 00:53:57s. Time for last 1,000,000: 12s. Last read position: chr8:144,433,632 INFO 2026-06-03 20:59:00 SinglePassSamProgram Processed 264,000,000 records. Elapsed time: 00:54:05s. Time for last 1,000,000: 7s. Last read position: chr9:368,053 INFO 2026-06-03 20:59:13 SinglePassSamProgram Processed 265,000,000 records. Elapsed time: 00:54:17s. Time for last 1,000,000: 12s. Last read position: chr9:7,798,515 INFO 2026-06-03 20:59:25 SinglePassSamProgram Processed 266,000,000 records. Elapsed time: 00:54:29s. Time for last 1,000,000: 12s. Last read position: chr9:19,316,473 INFO 2026-06-03 20:59:34 SinglePassSamProgram Processed 267,000,000 records. Elapsed time: 00:54:38s. Time for last 1,000,000: 8s. Last read position: chr9:32,544,183 INFO 2026-06-03 20:59:39 SinglePassSamProgram Processed 268,000,000 records. Elapsed time: 00:54:43s. Time for last 1,000,000: 5s. Last read position: chr9:33,926,879 INFO 2026-06-03 20:59:55 SinglePassSamProgram Processed 269,000,000 records. Elapsed time: 00:54:59s. Time for last 1,000,000: 15s. Last read position: chr9:35,607,581 INFO 2026-06-03 21:00:02 SinglePassSamProgram Processed 270,000,000 records. Elapsed time: 00:55:06s. Time for last 1,000,000: 6s. Last read position: chr9:36,581,713 INFO 2026-06-03 21:00:07 SinglePassSamProgram Processed 271,000,000 records. Elapsed time: 00:55:11s. Time for last 1,000,000: 5s. Last read position: chr9:68,303,670 INFO 2026-06-03 21:00:21 SinglePassSamProgram Processed 272,000,000 records. Elapsed time: 00:55:25s. Time for last 1,000,000: 14s. Last read position: chr9:75,088,678 INFO 2026-06-03 21:00:35 SinglePassSamProgram Processed 273,000,000 records. Elapsed time: 00:55:39s. Time for last 1,000,000: 13s. Last read position: chr9:83,969,257 INFO 2026-06-03 21:00:47 SinglePassSamProgram Processed 274,000,000 records. Elapsed time: 00:55:52s. Time for last 1,000,000: 12s. Last read position: chr9:89,350,667 INFO 2026-06-03 21:00:58 SinglePassSamProgram Processed 275,000,000 records. Elapsed time: 00:56:03s. Time for last 1,000,000: 11s. Last read position: chr9:93,229,711 INFO 2026-06-03 21:01:14 SinglePassSamProgram Processed 276,000,000 records. Elapsed time: 00:56:18s. Time for last 1,000,000: 15s. Last read position: chr9:93,297,865 INFO 2026-06-03 21:01:24 SinglePassSamProgram Processed 277,000,000 records. Elapsed time: 00:56:28s. Time for last 1,000,000: 10s. Last read position: chr9:95,062,331 INFO 2026-06-03 21:01:32 SinglePassSamProgram Processed 278,000,000 records. Elapsed time: 00:56:37s. Time for last 1,000,000: 8s. Last read position: chr9:98,796,126 INFO 2026-06-03 21:01:39 SinglePassSamProgram Processed 279,000,000 records. Elapsed time: 00:56:43s. Time for last 1,000,000: 6s. Last read position: chr9:105,522,706 INFO 2026-06-03 21:02:00 SinglePassSamProgram Processed 280,000,000 records. Elapsed time: 00:57:04s. Time for last 1,000,000: 21s. Last read position: chr9:110,244,178 INFO 2026-06-03 21:02:08 SinglePassSamProgram Processed 281,000,000 records. Elapsed time: 00:57:12s. Time for last 1,000,000: 7s. Last read position: chr9:113,184,751 INFO 2026-06-03 21:02:17 SinglePassSamProgram Processed 282,000,000 records. Elapsed time: 00:57:21s. Time for last 1,000,000: 9s. Last read position: chr9:114,592,552 INFO 2026-06-03 21:02:30 SinglePassSamProgram Processed 283,000,000 records. Elapsed time: 00:57:34s. Time for last 1,000,000: 12s. Last read position: chr9:121,327,455 INFO 2026-06-03 21:02:39 SinglePassSamProgram Processed 284,000,000 records. Elapsed time: 00:57:43s. Time for last 1,000,000: 8s. Last read position: chr9:124,857,953 INFO 2026-06-03 21:02:47 SinglePassSamProgram Processed 285,000,000 records. Elapsed time: 00:57:52s. Time for last 1,000,000: 8s. Last read position: chr9:127,450,742 INFO 2026-06-03 21:03:00 SinglePassSamProgram Processed 286,000,000 records. Elapsed time: 00:58:04s. Time for last 1,000,000: 12s. Last read position: chr9:128,121,113 INFO 2026-06-03 21:03:18 SinglePassSamProgram Processed 287,000,000 records. Elapsed time: 00:58:22s. Time for last 1,000,000: 17s. Last read position: chr9:128,345,432 INFO 2026-06-03 21:03:41 SinglePassSamProgram Processed 288,000,000 records. Elapsed time: 00:58:46s. Time for last 1,000,000: 23s. Last read position: chr9:128,721,313 INFO 2026-06-03 21:03:49 SinglePassSamProgram Processed 289,000,000 records. Elapsed time: 00:58:53s. Time for last 1,000,000: 7s. Last read position: chr9:129,829,528 INFO 2026-06-03 21:03:57 SinglePassSamProgram Processed 290,000,000 records. Elapsed time: 00:59:02s. Time for last 1,000,000: 8s. Last read position: chr9:131,150,645 INFO 2026-06-03 21:04:08 SinglePassSamProgram Processed 291,000,000 records. Elapsed time: 00:59:12s. Time for last 1,000,000: 10s. Last read position: chr9:132,264,583 INFO 2026-06-03 21:04:17 SinglePassSamProgram Processed 292,000,000 records. Elapsed time: 00:59:22s. Time for last 1,000,000: 9s. Last read position: chr9:133,349,654 INFO 2026-06-03 21:04:24 SinglePassSamProgram Processed 293,000,000 records. Elapsed time: 00:59:28s. Time for last 1,000,000: 6s. Last read position: chr9:134,139,880 INFO 2026-06-03 21:04:32 SinglePassSamProgram Processed 294,000,000 records. Elapsed time: 00:59:36s. Time for last 1,000,000: 8s. Last read position: chr9:136,378,925 INFO 2026-06-03 21:04:49 SinglePassSamProgram Processed 295,000,000 records. Elapsed time: 00:59:53s. Time for last 1,000,000: 16s. Last read position: chr9:136,509,886 INFO 2026-06-03 21:05:02 SinglePassSamProgram Processed 296,000,000 records. Elapsed time: 01:00:06s. Time for last 1,000,000: 13s. Last read position: chr9:136,942,621 INFO 2026-06-03 21:05:16 SinglePassSamProgram Processed 297,000,000 records. Elapsed time: 01:00:20s. Time for last 1,000,000: 14s. Last read position: chr9:137,188,764 INFO 2026-06-03 21:05:19 SinglePassSamProgram Processed 298,000,000 records. Elapsed time: 01:00:24s. Time for last 1,000,000: 3s. Last read position: chr9:137,452,378 INFO 2026-06-03 21:05:35 SinglePassSamProgram Processed 299,000,000 records. Elapsed time: 01:00:40s. Time for last 1,000,000: 15s. Last read position: chr10:3,160,257 INFO 2026-06-03 21:05:45 SinglePassSamProgram Processed 300,000,000 records. Elapsed time: 01:00:49s. Time for last 1,000,000: 9s. Last read position: chr10:16,754,967 INFO 2026-06-03 21:05:59 SinglePassSamProgram Processed 301,000,000 records. Elapsed time: 01:01:04s. Time for last 1,000,000: 14s. Last read position: chr10:29,481,614 INFO 2026-06-03 21:06:08 SinglePassSamProgram Processed 302,000,000 records. Elapsed time: 01:01:12s. Time for last 1,000,000: 8s. Last read position: chr10:32,920,359 INFO 2026-06-03 21:06:20 SinglePassSamProgram Processed 303,000,000 records. Elapsed time: 01:01:24s. Time for last 1,000,000: 12s. Last read position: chr10:46,014,537 INFO 2026-06-03 21:06:27 SinglePassSamProgram Processed 304,000,000 records. Elapsed time: 01:01:31s. Time for last 1,000,000: 7s. Last read position: chr10:63,207,039 INFO 2026-06-03 21:06:36 SinglePassSamProgram Processed 305,000,000 records. Elapsed time: 01:01:40s. Time for last 1,000,000: 8s. Last read position: chr10:72,274,243 INFO 2026-06-03 21:06:51 SinglePassSamProgram Processed 306,000,000 records. Elapsed time: 01:01:55s. Time for last 1,000,000: 14s. Last read position: chr10:78,035,675 INFO 2026-06-03 21:06:56 SinglePassSamProgram Processed 307,000,000 records. Elapsed time: 01:02:01s. Time for last 1,000,000: 5s. Last read position: chr10:87,364,850 INFO 2026-06-03 21:07:09 SinglePassSamProgram Processed 308,000,000 records. Elapsed time: 01:02:13s. Time for last 1,000,000: 12s. Last read position: chr10:95,872,737 INFO 2026-06-03 21:07:18 SinglePassSamProgram Processed 309,000,000 records. Elapsed time: 01:02:22s. Time for last 1,000,000: 9s. Last read position: chr10:100,924,273 INFO 2026-06-03 21:07:36 SinglePassSamProgram Processed 310,000,000 records. Elapsed time: 01:02:41s. Time for last 1,000,000: 18s. Last read position: chr10:103,603,098 INFO 2026-06-03 21:07:47 SinglePassSamProgram Processed 311,000,000 records. Elapsed time: 01:02:52s. Time for last 1,000,000: 11s. Last read position: chr10:114,571,368 INFO 2026-06-03 21:07:55 SinglePassSamProgram Processed 312,000,000 records. Elapsed time: 01:02:59s. Time for last 1,000,000: 7s. Last read position: chr10:121,515,152 INFO 2026-06-03 21:08:08 SinglePassSamProgram Processed 313,000,000 records. Elapsed time: 01:03:13s. Time for last 1,000,000: 13s. Last read position: chr10:128,105,061 INFO 2026-06-03 21:08:14 SinglePassSamProgram Processed 314,000,000 records. Elapsed time: 01:03:18s. Time for last 1,000,000: 5s. Last read position: chr11:319,871 INFO 2026-06-03 21:08:24 SinglePassSamProgram Processed 315,000,000 records. Elapsed time: 01:03:28s. Time for last 1,000,000: 9s. Last read position: chr11:771,070 INFO 2026-06-03 21:08:32 SinglePassSamProgram Processed 316,000,000 records. Elapsed time: 01:03:36s. Time for last 1,000,000: 8s. Last read position: chr11:1,450,713 INFO 2026-06-03 21:08:41 SinglePassSamProgram Processed 317,000,000 records. Elapsed time: 01:03:45s. Time for last 1,000,000: 8s. Last read position: chr11:3,039,864 INFO 2026-06-03 21:08:53 SinglePassSamProgram Processed 318,000,000 records. Elapsed time: 01:03:57s. Time for last 1,000,000: 11s. Last read position: chr11:7,651,694 INFO 2026-06-03 21:09:06 SinglePassSamProgram Processed 319,000,000 records. Elapsed time: 01:04:11s. Time for last 1,000,000: 13s. Last read position: chr11:12,879,798 INFO 2026-06-03 21:09:15 SinglePassSamProgram Processed 320,000,000 records. Elapsed time: 01:04:20s. Time for last 1,000,000: 8s. Last read position: chr11:18,616,933 INFO 2026-06-03 21:09:24 SinglePassSamProgram Processed 321,000,000 records. Elapsed time: 01:04:28s. Time for last 1,000,000: 8s. Last read position: chr11:34,895,014 INFO 2026-06-03 21:09:36 SinglePassSamProgram Processed 322,000,000 records. Elapsed time: 01:04:40s. Time for last 1,000,000: 11s. Last read position: chr11:46,379,898 INFO 2026-06-03 21:09:48 SinglePassSamProgram Processed 323,000,000 records. Elapsed time: 01:04:53s. Time for last 1,000,000: 12s. Last read position: chr11:47,847,929 INFO 2026-06-03 21:10:11 SinglePassSamProgram Processed 324,000,000 records. Elapsed time: 01:05:16s. Time for last 1,000,000: 22s. Last read position: chr11:58,609,828 INFO 2026-06-03 21:10:24 SinglePassSamProgram Processed 325,000,000 records. Elapsed time: 01:05:29s. Time for last 1,000,000: 12s. Last read position: chr11:61,771,599 INFO 2026-06-03 21:10:30 SinglePassSamProgram Processed 326,000,000 records. Elapsed time: 01:05:35s. Time for last 1,000,000: 6s. Last read position: chr11:62,525,162 INFO 2026-06-03 21:10:34 SinglePassSamProgram Processed 327,000,000 records. Elapsed time: 01:05:39s. Time for last 1,000,000: 3s. Last read position: chr11:62,608,586 INFO 2026-06-03 21:10:46 SinglePassSamProgram Processed 328,000,000 records. Elapsed time: 01:05:50s. Time for last 1,000,000: 11s. Last read position: chr11:64,207,457 INFO 2026-06-03 21:10:54 SinglePassSamProgram Processed 329,000,000 records. Elapsed time: 01:05:58s. Time for last 1,000,000: 8s. Last read position: chr11:64,909,911 INFO 2026-06-03 21:11:05 SinglePassSamProgram Processed 330,000,000 records. Elapsed time: 01:06:09s. Time for last 1,000,000: 10s. Last read position: chr11:65,573,565 INFO 2026-06-03 21:11:13 SinglePassSamProgram Processed 331,000,000 records. Elapsed time: 01:06:17s. Time for last 1,000,000: 8s. Last read position: chr11:66,003,655 INFO 2026-06-03 21:11:24 SinglePassSamProgram Processed 332,000,000 records. Elapsed time: 01:06:28s. Time for last 1,000,000: 10s. Last read position: chr11:67,393,763 INFO 2026-06-03 21:11:31 SinglePassSamProgram Processed 333,000,000 records. Elapsed time: 01:06:35s. Time for last 1,000,000: 7s. Last read position: chr11:68,446,474 INFO 2026-06-03 21:11:42 SinglePassSamProgram Processed 334,000,000 records. Elapsed time: 01:06:47s. Time for last 1,000,000: 11s. Last read position: chr11:72,003,993 INFO 2026-06-03 21:12:01 SinglePassSamProgram Processed 335,000,000 records. Elapsed time: 01:07:05s. Time for last 1,000,000: 18s. Last read position: chr11:74,034,132 INFO 2026-06-03 21:12:13 SinglePassSamProgram Processed 336,000,000 records. Elapsed time: 01:07:18s. Time for last 1,000,000: 12s. Last read position: chr11:77,667,199 INFO 2026-06-03 21:12:28 SinglePassSamProgram Processed 337,000,000 records. Elapsed time: 01:07:33s. Time for last 1,000,000: 14s. Last read position: chr11:92,774,083 INFO 2026-06-03 21:12:38 SinglePassSamProgram Processed 338,000,000 records. Elapsed time: 01:07:43s. Time for last 1,000,000: 10s. Last read position: chr11:108,243,959 INFO 2026-06-03 21:12:51 SinglePassSamProgram Processed 339,000,000 records. Elapsed time: 01:07:55s. Time for last 1,000,000: 12s. Last read position: chr11:117,229,524 INFO 2026-06-03 21:13:02 SinglePassSamProgram Processed 340,000,000 records. Elapsed time: 01:08:06s. Time for last 1,000,000: 11s. Last read position: chr11:118,900,002 INFO 2026-06-03 21:13:12 SinglePassSamProgram Processed 341,000,000 records. Elapsed time: 01:08:16s. Time for last 1,000,000: 9s. Last read position: chr11:120,460,717 INFO 2026-06-03 21:13:23 SinglePassSamProgram Processed 342,000,000 records. Elapsed time: 01:08:27s. Time for last 1,000,000: 11s. Last read position: chr11:126,267,700 INFO 2026-06-03 21:13:31 SinglePassSamProgram Processed 343,000,000 records. Elapsed time: 01:08:36s. Time for last 1,000,000: 8s. Last read position: chr11:130,194,180 INFO 2026-06-03 21:13:42 SinglePassSamProgram Processed 344,000,000 records. Elapsed time: 01:08:46s. Time for last 1,000,000: 10s. Last read position: chr12:1,115,872 INFO 2026-06-03 21:13:55 SinglePassSamProgram Processed 345,000,000 records. Elapsed time: 01:09:00s. Time for last 1,000,000: 13s. Last read position: chr12:6,517,885 INFO 2026-06-03 21:14:23 SinglePassSamProgram Processed 346,000,000 records. Elapsed time: 01:09:27s. Time for last 1,000,000: 27s. Last read position: chr12:6,937,032 INFO 2026-06-03 21:14:31 SinglePassSamProgram Processed 347,000,000 records. Elapsed time: 01:09:36s. Time for last 1,000,000: 8s. Last read position: chr12:9,301,157 INFO 2026-06-03 21:14:38 SinglePassSamProgram Processed 348,000,000 records. Elapsed time: 01:09:42s. Time for last 1,000,000: 6s. Last read position: chr12:15,624,331 INFO 2026-06-03 21:14:48 SinglePassSamProgram Processed 349,000,000 records. Elapsed time: 01:09:52s. Time for last 1,000,000: 10s. Last read position: chr12:30,666,182 INFO 2026-06-03 21:15:00 SinglePassSamProgram Processed 350,000,000 records. Elapsed time: 01:10:04s. Time for last 1,000,000: 11s. Last read position: chr12:46,204,587 INFO 2026-06-03 21:15:13 SinglePassSamProgram Processed 351,000,000 records. Elapsed time: 01:10:17s. Time for last 1,000,000: 12s. Last read position: chr12:49,032,632 INFO 2026-06-03 21:15:19 SinglePassSamProgram Processed 352,000,000 records. Elapsed time: 01:10:23s. Time for last 1,000,000: 6s. Last read position: chr12:49,186,657 INFO 2026-06-03 21:15:29 SinglePassSamProgram Processed 353,000,000 records. Elapsed time: 01:10:33s. Time for last 1,000,000: 9s. Last read position: chr12:50,732,397 INFO 2026-06-03 21:15:37 SinglePassSamProgram Processed 354,000,000 records. Elapsed time: 01:10:41s. Time for last 1,000,000: 8s. Last read position: chr12:52,904,803 INFO 2026-06-03 21:15:49 SinglePassSamProgram Processed 355,000,000 records. Elapsed time: 01:10:53s. Time for last 1,000,000: 11s. Last read position: chr12:53,213,605 INFO 2026-06-03 21:16:01 SinglePassSamProgram Processed 356,000,000 records. Elapsed time: 01:11:05s. Time for last 1,000,000: 11s. Last read position: chr12:54,011,269 INFO 2026-06-03 21:16:18 SinglePassSamProgram Processed 357,000,000 records. Elapsed time: 01:11:23s. Time for last 1,000,000: 17s. Last read position: chr12:55,727,288 INFO 2026-06-03 21:16:30 SinglePassSamProgram Processed 358,000,000 records. Elapsed time: 01:11:35s. Time for last 1,000,000: 12s. Last read position: chr12:56,243,113 INFO 2026-06-03 21:16:43 SinglePassSamProgram Processed 359,000,000 records. Elapsed time: 01:11:47s. Time for last 1,000,000: 12s. Last read position: chr12:56,712,459 INFO 2026-06-03 21:16:57 SinglePassSamProgram Processed 360,000,000 records. Elapsed time: 01:12:01s. Time for last 1,000,000: 14s. Last read position: chr12:57,098,513 INFO 2026-06-03 21:17:19 SinglePassSamProgram Processed 361,000,000 records. Elapsed time: 01:12:23s. Time for last 1,000,000: 21s. Last read position: chr12:57,178,889 INFO 2026-06-03 21:17:34 SinglePassSamProgram Processed 362,000,000 records. Elapsed time: 01:12:39s. Time for last 1,000,000: 15s. Last read position: chr12:57,695,778 INFO 2026-06-03 21:17:45 SinglePassSamProgram Processed 363,000,000 records. Elapsed time: 01:12:49s. Time for last 1,000,000: 10s. Last read position: chr12:66,323,990 INFO 2026-06-03 21:17:55 SinglePassSamProgram Processed 364,000,000 records. Elapsed time: 01:12:59s. Time for last 1,000,000: 9s. Last read position: chr12:71,132,699 INFO 2026-06-03 21:18:05 SinglePassSamProgram Processed 365,000,000 records. Elapsed time: 01:13:09s. Time for last 1,000,000: 10s. Last read position: chr12:79,808,513 INFO 2026-06-03 21:18:18 SinglePassSamProgram Processed 366,000,000 records. Elapsed time: 01:13:23s. Time for last 1,000,000: 13s. Last read position: chr12:96,035,450 INFO 2026-06-03 21:18:41 SinglePassSamProgram Processed 367,000,000 records. Elapsed time: 01:13:45s. Time for last 1,000,000: 22s. Last read position: chr12:104,102,045 INFO 2026-06-03 21:18:53 SinglePassSamProgram Processed 368,000,000 records. Elapsed time: 01:13:57s. Time for last 1,000,000: 11s. Last read position: chr12:110,024,069 INFO 2026-06-03 21:19:07 SinglePassSamProgram Processed 369,000,000 records. Elapsed time: 01:14:11s. Time for last 1,000,000: 14s. Last read position: chr12:112,908,640 INFO 2026-06-03 21:19:21 SinglePassSamProgram Processed 370,000,000 records. Elapsed time: 01:14:26s. Time for last 1,000,000: 14s. Last read position: chr12:120,197,399 INFO 2026-06-03 21:19:31 SinglePassSamProgram Processed 371,000,000 records. Elapsed time: 01:14:36s. Time for last 1,000,000: 10s. Last read position: chr12:122,377,387 INFO 2026-06-03 21:19:49 SinglePassSamProgram Processed 372,000,000 records. Elapsed time: 01:14:53s. Time for last 1,000,000: 17s. Last read position: chr12:124,912,427 INFO 2026-06-03 21:19:58 SinglePassSamProgram Processed 373,000,000 records. Elapsed time: 01:15:02s. Time for last 1,000,000: 8s. Last read position: chr12:132,825,667 INFO 2026-06-03 21:20:09 SinglePassSamProgram Processed 374,000,000 records. Elapsed time: 01:15:13s. Time for last 1,000,000: 11s. Last read position: chr13:23,340,879 INFO 2026-06-03 21:20:19 SinglePassSamProgram Processed 375,000,000 records. Elapsed time: 01:15:23s. Time for last 1,000,000: 9s. Last read position: chr13:27,622,895 INFO 2026-06-03 21:20:36 SinglePassSamProgram Processed 376,000,000 records. Elapsed time: 01:15:41s. Time for last 1,000,000: 17s. Last read position: chr13:36,949,968 INFO 2026-06-03 21:20:51 SinglePassSamProgram Processed 377,000,000 records. Elapsed time: 01:15:55s. Time for last 1,000,000: 14s. Last read position: chr13:44,574,224 INFO 2026-06-03 21:21:05 SinglePassSamProgram Processed 378,000,000 records. Elapsed time: 01:16:09s. Time for last 1,000,000: 13s. Last read position: chr13:48,412,203 INFO 2026-06-03 21:21:22 SinglePassSamProgram Processed 379,000,000 records. Elapsed time: 01:16:27s. Time for last 1,000,000: 17s. Last read position: chr13:73,059,520 INFO 2026-06-03 21:21:47 SinglePassSamProgram Processed 380,000,000 records. Elapsed time: 01:16:52s. Time for last 1,000,000: 24s. Last read position: chr13:95,867,412 INFO 2026-06-03 21:22:16 SinglePassSamProgram Processed 381,000,000 records. Elapsed time: 01:17:21s. Time for last 1,000,000: 28s. Last read position: chr13:102,647,232 INFO 2026-06-03 21:22:35 SinglePassSamProgram Processed 382,000,000 records. Elapsed time: 01:17:39s. Time for last 1,000,000: 18s. Last read position: chr13:110,208,871 INFO 2026-06-03 21:22:59 SinglePassSamProgram Processed 383,000,000 records. Elapsed time: 01:18:04s. Time for last 1,000,000: 24s. Last read position: chr13:112,819,384 INFO 2026-06-03 21:23:21 SinglePassSamProgram Processed 384,000,000 records. Elapsed time: 01:18:25s. Time for last 1,000,000: 21s. Last read position: chr13:114,304,847 INFO 2026-06-03 21:23:53 SinglePassSamProgram Processed 385,000,000 records. Elapsed time: 01:18:57s. Time for last 1,000,000: 32s. Last read position: chr14:21,231,027 INFO 2026-06-03 21:24:17 SinglePassSamProgram Processed 386,000,000 records. Elapsed time: 01:19:21s. Time for last 1,000,000: 23s. Last read position: chr14:23,322,216 INFO 2026-06-03 21:24:53 SinglePassSamProgram Processed 387,000,000 records. Elapsed time: 01:19:57s. Time for last 1,000,000: 36s. Last read position: chr14:31,101,199 INFO 2026-06-03 21:25:17 SinglePassSamProgram Processed 388,000,000 records. Elapsed time: 01:20:21s. Time for last 1,000,000: 24s. Last read position: chr14:35,046,556 INFO 2026-06-03 21:25:37 SinglePassSamProgram Processed 389,000,000 records. Elapsed time: 01:20:41s. Time for last 1,000,000: 19s. Last read position: chr14:49,599,122 INFO 2026-06-03 21:25:51 SinglePassSamProgram Processed 390,000,000 records. Elapsed time: 01:20:56s. Time for last 1,000,000: 14s. Last read position: chr14:54,481,434 INFO 2026-06-03 21:26:15 SinglePassSamProgram Processed 391,000,000 records. Elapsed time: 01:21:20s. Time for last 1,000,000: 24s. Last read position: chr14:63,422,004 INFO 2026-06-03 21:27:01 SinglePassSamProgram Processed 392,000,000 records. Elapsed time: 01:22:05s. Time for last 1,000,000: 45s. Last read position: chr14:68,884,254 INFO 2026-06-03 21:27:20 SinglePassSamProgram Processed 393,000,000 records. Elapsed time: 01:22:24s. Time for last 1,000,000: 19s. Last read position: chr14:74,504,001 INFO 2026-06-03 21:27:36 SinglePassSamProgram Processed 394,000,000 records. Elapsed time: 01:22:40s. Time for last 1,000,000: 15s. Last read position: chr14:88,857,221 INFO 2026-06-03 21:27:52 SinglePassSamProgram Processed 395,000,000 records. Elapsed time: 01:22:57s. Time for last 1,000,000: 16s. Last read position: chr14:95,203,421 INFO 2026-06-03 21:30:12 SinglePassSamProgram Processed 396,000,000 records. Elapsed time: 01:25:16s. Time for last 1,000,000: 139s. Last read position: chr14:102,082,142 INFO 2026-06-03 21:30:43 SinglePassSamProgram Processed 397,000,000 records. Elapsed time: 01:25:47s. Time for last 1,000,000: 31s. Last read position: chr14:104,714,409 INFO 2026-06-03 21:30:55 SinglePassSamProgram Processed 398,000,000 records. Elapsed time: 01:26:00s. Time for last 1,000,000: 12s. Last read position: chr14:105,588,260 INFO 2026-06-03 21:30:57 SinglePassSamProgram Processed 399,000,000 records. Elapsed time: 01:26:01s. Time for last 1,000,000: 1s. Last read position: chr14:105,863,198 INFO 2026-06-03 21:31:46 SinglePassSamProgram Processed 400,000,000 records. Elapsed time: 01:26:50s. Time for last 1,000,000: 48s. Last read position: chr15:28,237,027 INFO 2026-06-03 21:31:53 SinglePassSamProgram Processed 401,000,000 records. Elapsed time: 01:26:57s. Time for last 1,000,000: 7s. Last read position: chr15:30,408,441 INFO 2026-06-03 21:32:03 SinglePassSamProgram Processed 402,000,000 records. Elapsed time: 01:27:07s. Time for last 1,000,000: 10s. Last read position: chr15:32,635,779 INFO 2026-06-03 21:32:12 SinglePassSamProgram Processed 403,000,000 records. Elapsed time: 01:27:16s. Time for last 1,000,000: 8s. Last read position: chr15:34,528,411 INFO 2026-06-03 21:32:19 SinglePassSamProgram Processed 404,000,000 records. Elapsed time: 01:27:24s. Time for last 1,000,000: 7s. Last read position: chr15:40,353,231 INFO 2026-06-03 21:32:31 SinglePassSamProgram Processed 405,000,000 records. Elapsed time: 01:27:35s. Time for last 1,000,000: 11s. Last read position: chr15:41,477,484 INFO 2026-06-03 21:32:48 SinglePassSamProgram Processed 406,000,000 records. Elapsed time: 01:27:53s. Time for last 1,000,000: 17s. Last read position: chr15:42,267,978 INFO 2026-06-03 21:33:09 SinglePassSamProgram Processed 407,000,000 records. Elapsed time: 01:28:13s. Time for last 1,000,000: 20s. Last read position: chr15:43,573,084 INFO 2026-06-03 21:33:20 SinglePassSamProgram Processed 408,000,000 records. Elapsed time: 01:28:25s. Time for last 1,000,000: 11s. Last read position: chr15:43,775,253 INFO 2026-06-03 21:33:36 SinglePassSamProgram Processed 409,000,000 records. Elapsed time: 01:28:40s. Time for last 1,000,000: 15s. Last read position: chr15:44,711,551 INFO 2026-06-03 21:33:48 SinglePassSamProgram Processed 410,000,000 records. Elapsed time: 01:28:52s. Time for last 1,000,000: 12s. Last read position: chr15:50,228,979 INFO 2026-06-03 21:34:09 SinglePassSamProgram Processed 411,000,000 records. Elapsed time: 01:29:13s. Time for last 1,000,000: 21s. Last read position: chr15:56,094,576 INFO 2026-06-03 21:34:36 SinglePassSamProgram Processed 412,000,000 records. Elapsed time: 01:29:41s. Time for last 1,000,000: 27s. Last read position: chr15:59,207,207 INFO 2026-06-03 21:35:22 SinglePassSamProgram Processed 413,000,000 records. Elapsed time: 01:30:27s. Time for last 1,000,000: 45s. Last read position: chr15:63,062,257 INFO 2026-06-03 21:35:38 SinglePassSamProgram Processed 414,000,000 records. Elapsed time: 01:30:42s. Time for last 1,000,000: 15s. Last read position: chr15:65,446,903 INFO 2026-06-03 21:35:54 SinglePassSamProgram Processed 415,000,000 records. Elapsed time: 01:30:59s. Time for last 1,000,000: 16s. Last read position: chr15:67,806,682 INFO 2026-06-03 21:36:10 SinglePassSamProgram Processed 416,000,000 records. Elapsed time: 01:31:14s. Time for last 1,000,000: 15s. Last read position: chr15:72,209,798 INFO 2026-06-03 21:36:26 SinglePassSamProgram Processed 417,000,000 records. Elapsed time: 01:31:30s. Time for last 1,000,000: 15s. Last read position: chr15:74,615,865 INFO 2026-06-03 21:36:43 SinglePassSamProgram Processed 418,000,000 records. Elapsed time: 01:31:48s. Time for last 1,000,000: 17s. Last read position: chr15:75,364,072 INFO 2026-06-03 21:36:56 SinglePassSamProgram Processed 419,000,000 records. Elapsed time: 01:32:00s. Time for last 1,000,000: 12s. Last read position: chr15:78,497,104 INFO 2026-06-03 21:37:08 SinglePassSamProgram Processed 420,000,000 records. Elapsed time: 01:32:13s. Time for last 1,000,000: 12s. Last read position: chr15:82,989,899 INFO 2026-06-03 21:37:19 SinglePassSamProgram Processed 421,000,000 records. Elapsed time: 01:32:23s. Time for last 1,000,000: 10s. Last read position: chr15:88,855,575 INFO 2026-06-03 21:37:32 SinglePassSamProgram Processed 422,000,000 records. Elapsed time: 01:32:37s. Time for last 1,000,000: 13s. Last read position: chr15:90,230,936 INFO 2026-06-03 21:37:46 SinglePassSamProgram Processed 423,000,000 records. Elapsed time: 01:32:51s. Time for last 1,000,000: 13s. Last read position: chr15:90,969,524 INFO 2026-06-03 21:37:59 SinglePassSamProgram Processed 424,000,000 records. Elapsed time: 01:33:03s. Time for last 1,000,000: 12s. Last read position: chr15:101,432,005 INFO 2026-06-03 21:38:08 SinglePassSamProgram Processed 425,000,000 records. Elapsed time: 01:33:12s. Time for last 1,000,000: 9s. Last read position: chr16:673,056 INFO 2026-06-03 21:38:18 SinglePassSamProgram Processed 426,000,000 records. Elapsed time: 01:33:23s. Time for last 1,000,000: 10s. Last read position: chr16:1,940,816 INFO 2026-06-03 21:38:50 SinglePassSamProgram Processed 427,000,000 records. Elapsed time: 01:33:54s. Time for last 1,000,000: 31s. Last read position: chr16:2,253,936 INFO 2026-06-03 21:39:01 SinglePassSamProgram Processed 428,000,000 records. Elapsed time: 01:34:05s. Time for last 1,000,000: 11s. Last read position: chr16:2,775,454 INFO 2026-06-03 21:39:12 SinglePassSamProgram Processed 429,000,000 records. Elapsed time: 01:34:16s. Time for last 1,000,000: 10s. Last read position: chr16:4,609,664 INFO 2026-06-03 21:39:22 SinglePassSamProgram Processed 430,000,000 records. Elapsed time: 01:34:26s. Time for last 1,000,000: 9s. Last read position: chr16:12,568,541 INFO 2026-06-03 21:39:31 SinglePassSamProgram Processed 431,000,000 records. Elapsed time: 01:34:35s. Time for last 1,000,000: 9s. Last read position: chr16:15,114,539 INFO 2026-06-03 21:39:40 SinglePassSamProgram Processed 432,000,000 records. Elapsed time: 01:34:45s. Time for last 1,000,000: 9s. Last read position: chr16:16,360,963 INFO 2026-06-03 21:39:45 SinglePassSamProgram Processed 433,000,000 records. Elapsed time: 01:34:49s. Time for last 1,000,000: 4s. Last read position: chr16:18,783,011 INFO 2026-06-03 21:39:52 SinglePassSamProgram Processed 434,000,000 records. Elapsed time: 01:34:57s. Time for last 1,000,000: 7s. Last read position: chr16:21,404,851 INFO 2026-06-03 21:39:56 SinglePassSamProgram Processed 435,000,000 records. Elapsed time: 01:35:00s. Time for last 1,000,000: 3s. Last read position: chr16:21,837,416 INFO 2026-06-03 21:40:01 SinglePassSamProgram Processed 436,000,000 records. Elapsed time: 01:35:05s. Time for last 1,000,000: 5s. Last read position: chr16:22,490,836 INFO 2026-06-03 21:40:05 SinglePassSamProgram Processed 437,000,000 records. Elapsed time: 01:35:10s. Time for last 1,000,000: 4s. Last read position: chr16:23,562,632 INFO 2026-06-03 21:40:14 SinglePassSamProgram Processed 438,000,000 records. Elapsed time: 01:35:19s. Time for last 1,000,000: 9s. Last read position: chr16:28,362,557 INFO 2026-06-03 21:40:29 SinglePassSamProgram Processed 439,000,000 records. Elapsed time: 01:35:33s. Time for last 1,000,000: 14s. Last read position: chr16:28,845,414 INFO 2026-06-03 21:40:32 SinglePassSamProgram Processed 440,000,000 records. Elapsed time: 01:35:36s. Time for last 1,000,000: 3s. Last read position: chr16:29,484,961 INFO 2026-06-03 21:40:37 SinglePassSamProgram Processed 441,000,000 records. Elapsed time: 01:35:41s. Time for last 1,000,000: 5s. Last read position: chr16:29,859,487 INFO 2026-06-03 21:40:47 SinglePassSamProgram Processed 442,000,000 records. Elapsed time: 01:35:51s. Time for last 1,000,000: 10s. Last read position: chr16:30,223,277 INFO 2026-06-03 21:40:50 SinglePassSamProgram Processed 443,000,000 records. Elapsed time: 01:35:54s. Time for last 1,000,000: 2s. Last read position: chr16:30,713,209 INFO 2026-06-03 21:40:58 SinglePassSamProgram Processed 444,000,000 records. Elapsed time: 01:36:03s. Time for last 1,000,000: 8s. Last read position: chr16:31,183,895 INFO 2026-06-03 21:41:06 SinglePassSamProgram Processed 445,000,000 records. Elapsed time: 01:36:11s. Time for last 1,000,000: 8s. Last read position: chr16:47,497,432 INFO 2026-06-03 21:41:16 SinglePassSamProgram Processed 446,000,000 records. Elapsed time: 01:36:21s. Time for last 1,000,000: 9s. Last read position: chr16:56,683,222 INFO 2026-06-03 21:41:37 SinglePassSamProgram Processed 447,000,000 records. Elapsed time: 01:36:41s. Time for last 1,000,000: 20s. Last read position: chr16:58,547,199 INFO 2026-06-03 21:41:48 SinglePassSamProgram Processed 448,000,000 records. Elapsed time: 01:36:52s. Time for last 1,000,000: 11s. Last read position: chr16:67,199,580 INFO 2026-06-03 21:41:59 SinglePassSamProgram Processed 449,000,000 records. Elapsed time: 01:37:03s. Time for last 1,000,000: 11s. Last read position: chr16:68,563,523 INFO 2026-06-03 21:42:06 SinglePassSamProgram Processed 450,000,000 records. Elapsed time: 01:37:11s. Time for last 1,000,000: 7s. Last read position: chr16:69,931,565 INFO 2026-06-03 21:42:20 SinglePassSamProgram Processed 451,000,000 records. Elapsed time: 01:37:24s. Time for last 1,000,000: 13s. Last read position: chr16:71,927,614 INFO 2026-06-03 21:42:28 SinglePassSamProgram Processed 452,000,000 records. Elapsed time: 01:37:32s. Time for last 1,000,000: 7s. Last read position: chr16:75,529,266 INFO 2026-06-03 21:42:35 SinglePassSamProgram Processed 453,000,000 records. Elapsed time: 01:37:40s. Time for last 1,000,000: 7s. Last read position: chr16:84,778,961 INFO 2026-06-03 21:42:41 SinglePassSamProgram Processed 454,000,000 records. Elapsed time: 01:37:45s. Time for last 1,000,000: 5s. Last read position: chr16:88,643,382 INFO 2026-06-03 21:42:56 SinglePassSamProgram Processed 455,000,000 records. Elapsed time: 01:38:00s. Time for last 1,000,000: 14s. Last read position: chr16:89,561,234 INFO 2026-06-03 21:43:13 SinglePassSamProgram Processed 456,000,000 records. Elapsed time: 01:38:17s. Time for last 1,000,000: 17s. Last read position: chr17:714,629 INFO 2026-06-03 21:43:21 SinglePassSamProgram Processed 457,000,000 records. Elapsed time: 01:38:25s. Time for last 1,000,000: 8s. Last read position: chr17:1,365,048 INFO 2026-06-03 21:43:34 SinglePassSamProgram Processed 458,000,000 records. Elapsed time: 01:38:38s. Time for last 1,000,000: 13s. Last read position: chr17:1,736,147 INFO 2026-06-03 21:43:45 SinglePassSamProgram Processed 459,000,000 records. Elapsed time: 01:38:49s. Time for last 1,000,000: 10s. Last read position: chr17:3,724,196 INFO 2026-06-03 21:43:55 SinglePassSamProgram Processed 460,000,000 records. Elapsed time: 01:39:00s. Time for last 1,000,000: 10s. Last read position: chr17:4,716,182 INFO 2026-06-03 21:44:08 SinglePassSamProgram Processed 461,000,000 records. Elapsed time: 01:39:12s. Time for last 1,000,000: 12s. Last read position: chr17:5,004,568 INFO 2026-06-03 21:44:18 SinglePassSamProgram Processed 462,000,000 records. Elapsed time: 01:39:22s. Time for last 1,000,000: 9s. Last read position: chr17:7,241,622 INFO 2026-06-03 21:44:27 SinglePassSamProgram Processed 463,000,000 records. Elapsed time: 01:39:31s. Time for last 1,000,000: 9s. Last read position: chr17:7,565,448 INFO 2026-06-03 21:44:40 SinglePassSamProgram Processed 464,000,000 records. Elapsed time: 01:39:45s. Time for last 1,000,000: 13s. Last read position: chr17:7,911,610 INFO 2026-06-03 21:44:52 SinglePassSamProgram Processed 465,000,000 records. Elapsed time: 01:39:56s. Time for last 1,000,000: 11s. Last read position: chr17:16,121,157 INFO 2026-06-03 21:45:03 SinglePassSamProgram Processed 466,000,000 records. Elapsed time: 01:40:07s. Time for last 1,000,000: 10s. Last read position: chr17:18,487,680 INFO 2026-06-03 21:45:13 SinglePassSamProgram Processed 467,000,000 records. Elapsed time: 01:40:18s. Time for last 1,000,000: 10s. Last read position: chr17:28,639,438 INFO 2026-06-03 21:45:25 SinglePassSamProgram Processed 468,000,000 records. Elapsed time: 01:40:29s. Time for last 1,000,000: 11s. Last read position: chr17:30,956,240 INFO 2026-06-03 21:45:39 SinglePassSamProgram Processed 469,000,000 records. Elapsed time: 01:40:43s. Time for last 1,000,000: 13s. Last read position: chr17:35,844,895 INFO 2026-06-03 21:45:46 SinglePassSamProgram Processed 470,000,000 records. Elapsed time: 01:40:50s. Time for last 1,000,000: 7s. Last read position: chr17:38,729,501 INFO 2026-06-03 21:45:54 SinglePassSamProgram Processed 471,000,000 records. Elapsed time: 01:40:58s. Time for last 1,000,000: 8s. Last read position: chr17:39,715,921 INFO 2026-06-03 21:46:09 SinglePassSamProgram Processed 472,000,000 records. Elapsed time: 01:41:13s. Time for last 1,000,000: 14s. Last read position: chr17:40,879,828 INFO 2026-06-03 21:46:22 SinglePassSamProgram Processed 473,000,000 records. Elapsed time: 01:41:27s. Time for last 1,000,000: 13s. Last read position: chr17:42,582,078 INFO 2026-06-03 21:46:35 SinglePassSamProgram Processed 474,000,000 records. Elapsed time: 01:41:39s. Time for last 1,000,000: 12s. Last read position: chr17:44,074,709 INFO 2026-06-03 21:46:45 SinglePassSamProgram Processed 475,000,000 records. Elapsed time: 01:41:49s. Time for last 1,000,000: 9s. Last read position: chr17:45,549,023 INFO 2026-06-03 21:46:57 SinglePassSamProgram Processed 476,000,000 records. Elapsed time: 01:42:01s. Time for last 1,000,000: 12s. Last read position: chr17:48,058,440 INFO 2026-06-03 21:47:03 SinglePassSamProgram Processed 477,000,000 records. Elapsed time: 01:42:08s. Time for last 1,000,000: 6s. Last read position: chr17:50,186,436 INFO 2026-06-03 21:47:09 SinglePassSamProgram Processed 478,000,000 records. Elapsed time: 01:42:13s. Time for last 1,000,000: 5s. Last read position: chr17:50,188,770 INFO 2026-06-03 21:47:16 SinglePassSamProgram Processed 479,000,000 records. Elapsed time: 01:42:20s. Time for last 1,000,000: 6s. Last read position: chr17:50,190,371 INFO 2026-06-03 21:47:24 SinglePassSamProgram Processed 480,000,000 records. Elapsed time: 01:42:29s. Time for last 1,000,000: 8s. Last read position: chr17:50,193,947 INFO 2026-06-03 21:47:35 SinglePassSamProgram Processed 481,000,000 records. Elapsed time: 01:42:39s. Time for last 1,000,000: 10s. Last read position: chr17:50,195,563 INFO 2026-06-03 21:47:46 SinglePassSamProgram Processed 482,000,000 records. Elapsed time: 01:42:50s. Time for last 1,000,000: 11s. Last read position: chr17:50,197,744 INFO 2026-06-03 21:47:59 SinglePassSamProgram Processed 483,000,000 records. Elapsed time: 01:43:03s. Time for last 1,000,000: 12s. Last read position: chr17:50,468,258 INFO 2026-06-03 21:48:09 SinglePassSamProgram Processed 484,000,000 records. Elapsed time: 01:43:13s. Time for last 1,000,000: 10s. Last read position: chr17:58,357,591 INFO 2026-06-03 21:48:22 SinglePassSamProgram Processed 485,000,000 records. Elapsed time: 01:43:26s. Time for last 1,000,000: 13s. Last read position: chr17:59,838,387 INFO 2026-06-03 21:48:32 SinglePassSamProgram Processed 486,000,000 records. Elapsed time: 01:43:37s. Time for last 1,000,000: 10s. Last read position: chr17:64,499,973 INFO 2026-06-03 21:48:45 SinglePassSamProgram Processed 487,000,000 records. Elapsed time: 01:43:50s. Time for last 1,000,000: 13s. Last read position: chr17:68,395,150 INFO 2026-06-03 21:48:55 SinglePassSamProgram Processed 488,000,000 records. Elapsed time: 01:43:59s. Time for last 1,000,000: 9s. Last read position: chr17:75,103,969 INFO 2026-06-03 21:49:14 SinglePassSamProgram Processed 489,000,000 records. Elapsed time: 01:44:18s. Time for last 1,000,000: 18s. Last read position: chr17:75,730,913 INFO 2026-06-03 21:49:27 SinglePassSamProgram Processed 490,000,000 records. Elapsed time: 01:44:32s. Time for last 1,000,000: 13s. Last read position: chr17:76,478,739 INFO 2026-06-03 21:49:39 SinglePassSamProgram Processed 491,000,000 records. Elapsed time: 01:44:44s. Time for last 1,000,000: 11s. Last read position: chr17:78,973,012 INFO 2026-06-03 21:49:52 SinglePassSamProgram Processed 492,000,000 records. Elapsed time: 01:44:56s. Time for last 1,000,000: 12s. Last read position: chr17:81,085,709 INFO 2026-06-03 21:50:12 SinglePassSamProgram Processed 493,000,000 records. Elapsed time: 01:45:16s. Time for last 1,000,000: 20s. Last read position: chr17:81,846,474 INFO 2026-06-03 21:50:31 SinglePassSamProgram Processed 494,000,000 records. Elapsed time: 01:45:35s. Time for last 1,000,000: 19s. Last read position: chr17:82,194,128 INFO 2026-06-03 21:50:44 SinglePassSamProgram Processed 495,000,000 records. Elapsed time: 01:45:48s. Time for last 1,000,000: 12s. Last read position: chr18:2,747,548 INFO 2026-06-03 21:50:52 SinglePassSamProgram Processed 496,000,000 records. Elapsed time: 01:45:56s. Time for last 1,000,000: 8s. Last read position: chr18:11,885,701 INFO 2026-06-03 21:51:01 SinglePassSamProgram Processed 497,000,000 records. Elapsed time: 01:46:06s. Time for last 1,000,000: 9s. Last read position: chr18:23,557,123 INFO 2026-06-03 21:51:15 SinglePassSamProgram Processed 498,000,000 records. Elapsed time: 01:46:20s. Time for last 1,000,000: 13s. Last read position: chr18:31,498,243 INFO 2026-06-03 21:51:21 SinglePassSamProgram Processed 499,000,000 records. Elapsed time: 01:46:25s. Time for last 1,000,000: 5s. Last read position: chr18:32,287,460 INFO 2026-06-03 21:51:29 SinglePassSamProgram Processed 500,000,000 records. Elapsed time: 01:46:33s. Time for last 1,000,000: 8s. Last read position: chr18:44,951,564 INFO 2026-06-03 21:51:38 SinglePassSamProgram Processed 501,000,000 records. Elapsed time: 01:46:43s. Time for last 1,000,000: 9s. Last read position: chr18:49,490,805 INFO 2026-06-03 21:51:49 SinglePassSamProgram Processed 502,000,000 records. Elapsed time: 01:46:54s. Time for last 1,000,000: 10s. Last read position: chr18:50,275,636 INFO 2026-06-03 21:52:10 SinglePassSamProgram Processed 503,000,000 records. Elapsed time: 01:47:14s. Time for last 1,000,000: 20s. Last read position: chr18:62,895,912 INFO 2026-06-03 21:52:17 SinglePassSamProgram Processed 504,000,000 records. Elapsed time: 01:47:21s. Time for last 1,000,000: 7s. Last read position: chr19:580,675 INFO 2026-06-03 21:52:26 SinglePassSamProgram Processed 505,000,000 records. Elapsed time: 01:47:31s. Time for last 1,000,000: 9s. Last read position: chr19:1,053,328 INFO 2026-06-03 21:52:37 SinglePassSamProgram Processed 506,000,000 records. Elapsed time: 01:47:41s. Time for last 1,000,000: 10s. Last read position: chr19:1,474,869 INFO 2026-06-03 21:52:45 SinglePassSamProgram Processed 507,000,000 records. Elapsed time: 01:47:49s. Time for last 1,000,000: 7s. Last read position: chr19:2,244,547 INFO 2026-06-03 21:52:51 SinglePassSamProgram Processed 508,000,000 records. Elapsed time: 01:47:55s. Time for last 1,000,000: 5s. Last read position: chr19:3,532,636 INFO 2026-06-03 21:52:57 SinglePassSamProgram Processed 509,000,000 records. Elapsed time: 01:48:01s. Time for last 1,000,000: 6s. Last read position: chr19:4,657,932 INFO 2026-06-03 21:53:04 SinglePassSamProgram Processed 510,000,000 records. Elapsed time: 01:48:09s. Time for last 1,000,000: 7s. Last read position: chr19:5,844,078 INFO 2026-06-03 21:53:12 SinglePassSamProgram Processed 511,000,000 records. Elapsed time: 01:48:16s. Time for last 1,000,000: 7s. Last read position: chr19:7,535,911 INFO 2026-06-03 21:53:20 SinglePassSamProgram Processed 512,000,000 records. Elapsed time: 01:48:25s. Time for last 1,000,000: 8s. Last read position: chr19:9,413,452 INFO 2026-06-03 21:53:35 SinglePassSamProgram Processed 513,000,000 records. Elapsed time: 01:48:39s. Time for last 1,000,000: 14s. Last read position: chr19:10,631,684 INFO 2026-06-03 21:54:08 SinglePassSamProgram Processed 514,000,000 records. Elapsed time: 01:49:13s. Time for last 1,000,000: 33s. Last read position: chr19:11,241,689 INFO 2026-06-03 21:54:17 SinglePassSamProgram Processed 515,000,000 records. Elapsed time: 01:49:21s. Time for last 1,000,000: 8s. Last read position: chr19:12,764,850 INFO 2026-06-03 21:54:27 SinglePassSamProgram Processed 516,000,000 records. Elapsed time: 01:49:31s. Time for last 1,000,000: 10s. Last read position: chr19:14,071,109 INFO 2026-06-03 21:54:36 SinglePassSamProgram Processed 517,000,000 records. Elapsed time: 01:49:40s. Time for last 1,000,000: 8s. Last read position: chr19:15,124,965 INFO 2026-06-03 21:54:46 SinglePassSamProgram Processed 518,000,000 records. Elapsed time: 01:49:50s. Time for last 1,000,000: 9s. Last read position: chr19:15,895,542 INFO 2026-06-03 21:54:57 SinglePassSamProgram Processed 519,000,000 records. Elapsed time: 01:50:01s. Time for last 1,000,000: 11s. Last read position: chr19:17,521,004 INFO 2026-06-03 21:55:02 SinglePassSamProgram Processed 520,000,000 records. Elapsed time: 01:50:06s. Time for last 1,000,000: 5s. Last read position: chr19:18,388,692 INFO 2026-06-03 21:55:10 SinglePassSamProgram Processed 521,000,000 records. Elapsed time: 01:50:14s. Time for last 1,000,000: 8s. Last read position: chr19:19,306,012 INFO 2026-06-03 21:55:15 SinglePassSamProgram Processed 522,000,000 records. Elapsed time: 01:50:20s. Time for last 1,000,000: 5s. Last read position: chr19:33,044,336 INFO 2026-06-03 21:55:25 SinglePassSamProgram Processed 523,000,000 records. Elapsed time: 01:50:30s. Time for last 1,000,000: 10s. Last read position: chr19:35,654,624 INFO 2026-06-03 21:55:34 SinglePassSamProgram Processed 524,000,000 records. Elapsed time: 01:50:39s. Time for last 1,000,000: 8s. Last read position: chr19:38,701,025 INFO 2026-06-03 21:55:41 SinglePassSamProgram Processed 525,000,000 records. Elapsed time: 01:50:46s. Time for last 1,000,000: 7s. Last read position: chr19:39,415,034 INFO 2026-06-03 21:55:47 SinglePassSamProgram Processed 526,000,000 records. Elapsed time: 01:50:52s. Time for last 1,000,000: 5s. Last read position: chr19:39,943,373 INFO 2026-06-03 21:56:01 SinglePassSamProgram Processed 527,000,000 records. Elapsed time: 01:51:05s. Time for last 1,000,000: 13s. Last read position: chr19:41,426,728 INFO 2026-06-03 21:56:06 SinglePassSamProgram Processed 528,000,000 records. Elapsed time: 01:51:11s. Time for last 1,000,000: 5s. Last read position: chr19:41,727,260 INFO 2026-06-03 21:56:15 SinglePassSamProgram Processed 529,000,000 records. Elapsed time: 01:51:20s. Time for last 1,000,000: 8s. Last read position: chr19:42,295,068 INFO 2026-06-03 21:56:22 SinglePassSamProgram Processed 530,000,000 records. Elapsed time: 01:51:26s. Time for last 1,000,000: 6s. Last read position: chr19:45,396,852 INFO 2026-06-03 21:56:29 SinglePassSamProgram Processed 531,000,000 records. Elapsed time: 01:51:33s. Time for last 1,000,000: 7s. Last read position: chr19:47,143,579 INFO 2026-06-03 21:56:36 SinglePassSamProgram Processed 532,000,000 records. Elapsed time: 01:51:40s. Time for last 1,000,000: 7s. Last read position: chr19:48,873,964 INFO 2026-06-03 21:56:44 SinglePassSamProgram Processed 533,000,000 records. Elapsed time: 01:51:49s. Time for last 1,000,000: 8s. Last read position: chr19:49,636,668 INFO 2026-06-03 21:57:00 SinglePassSamProgram Processed 534,000,000 records. Elapsed time: 01:52:04s. Time for last 1,000,000: 15s. Last read position: chr19:50,820,297 INFO 2026-06-03 21:57:05 SinglePassSamProgram Processed 535,000,000 records. Elapsed time: 01:52:09s. Time for last 1,000,000: 5s. Last read position: chr19:52,888,126 INFO 2026-06-03 21:57:11 SinglePassSamProgram Processed 536,000,000 records. Elapsed time: 01:52:16s. Time for last 1,000,000: 6s. Last read position: chr19:54,361,190 INFO 2026-06-03 21:57:20 SinglePassSamProgram Processed 537,000,000 records. Elapsed time: 01:52:24s. Time for last 1,000,000: 8s. Last read position: chr19:55,203,900 INFO 2026-06-03 21:57:24 SinglePassSamProgram Processed 538,000,000 records. Elapsed time: 01:52:29s. Time for last 1,000,000: 4s. Last read position: chr19:55,669,459 INFO 2026-06-03 21:57:29 SinglePassSamProgram Processed 539,000,000 records. Elapsed time: 01:52:33s. Time for last 1,000,000: 4s. Last read position: chr19:57,876,916 INFO 2026-06-03 21:57:35 SinglePassSamProgram Processed 540,000,000 records. Elapsed time: 01:52:39s. Time for last 1,000,000: 6s. Last read position: chr20:419,448 INFO 2026-06-03 21:57:46 SinglePassSamProgram Processed 541,000,000 records. Elapsed time: 01:52:51s. Time for last 1,000,000: 11s. Last read position: chr20:2,864,256 INFO 2026-06-03 21:57:52 SinglePassSamProgram Processed 542,000,000 records. Elapsed time: 01:52:56s. Time for last 1,000,000: 5s. Last read position: chr20:5,580,007 INFO 2026-06-03 21:58:01 SinglePassSamProgram Processed 543,000,000 records. Elapsed time: 01:53:06s. Time for last 1,000,000: 9s. Last read position: chr20:17,641,833 INFO 2026-06-03 21:58:17 SinglePassSamProgram Processed 544,000,000 records. Elapsed time: 01:53:21s. Time for last 1,000,000: 15s. Last read position: chr20:20,573,034 INFO 2026-06-03 21:58:24 SinglePassSamProgram Processed 545,000,000 records. Elapsed time: 01:53:29s. Time for last 1,000,000: 7s. Last read position: chr20:31,554,756 INFO 2026-06-03 21:58:35 SinglePassSamProgram Processed 546,000,000 records. Elapsed time: 01:53:40s. Time for last 1,000,000: 11s. Last read position: chr20:34,749,820 INFO 2026-06-03 21:58:51 SinglePassSamProgram Processed 547,000,000 records. Elapsed time: 01:53:56s. Time for last 1,000,000: 15s. Last read position: chr20:36,526,920 INFO 2026-06-03 21:59:00 SinglePassSamProgram Processed 548,000,000 records. Elapsed time: 01:54:04s. Time for last 1,000,000: 8s. Last read position: chr20:43,459,796 INFO 2026-06-03 21:59:17 SinglePassSamProgram Processed 549,000,000 records. Elapsed time: 01:54:21s. Time for last 1,000,000: 16s. Last read position: chr20:45,909,575 INFO 2026-06-03 21:59:30 SinglePassSamProgram Processed 550,000,000 records. Elapsed time: 01:54:35s. Time for last 1,000,000: 13s. Last read position: chr20:49,936,431 INFO 2026-06-03 21:59:35 SinglePassSamProgram Processed 551,000,000 records. Elapsed time: 01:54:39s. Time for last 1,000,000: 4s. Last read position: chr20:58,667,550 INFO 2026-06-03 21:59:50 SinglePassSamProgram Processed 552,000,000 records. Elapsed time: 01:54:54s. Time for last 1,000,000: 14s. Last read position: chr20:62,656,982 INFO 2026-06-03 21:59:56 SinglePassSamProgram Processed 553,000,000 records. Elapsed time: 01:55:01s. Time for last 1,000,000: 6s. Last read position: chr20:63,738,335 INFO 2026-06-03 21:59:59 SinglePassSamProgram Processed 554,000,000 records. Elapsed time: 01:55:03s. Time for last 1,000,000: 2s. Last read position: chr21:8,217,308 INFO 2026-06-03 22:00:00 SinglePassSamProgram Processed 555,000,000 records. Elapsed time: 01:55:04s. Time for last 1,000,000: 1s. Last read position: chr21:8,441,947 INFO 2026-06-03 22:00:06 SinglePassSamProgram Processed 556,000,000 records. Elapsed time: 01:55:10s. Time for last 1,000,000: 6s. Last read position: chr21:29,056,462 INFO 2026-06-03 22:00:15 SinglePassSamProgram Processed 557,000,000 records. Elapsed time: 01:55:19s. Time for last 1,000,000: 8s. Last read position: chr21:36,208,804 INFO 2026-06-03 22:00:35 SinglePassSamProgram Processed 558,000,000 records. Elapsed time: 01:55:40s. Time for last 1,000,000: 20s. Last read position: chr21:41,901,638 INFO 2026-06-03 22:00:41 SinglePassSamProgram Processed 559,000,000 records. Elapsed time: 01:55:46s. Time for last 1,000,000: 5s. Last read position: chr21:44,423,651 INFO 2026-06-03 22:00:53 SinglePassSamProgram Processed 560,000,000 records. Elapsed time: 01:55:58s. Time for last 1,000,000: 12s. Last read position: chr21:46,284,999 INFO 2026-06-03 22:01:04 SinglePassSamProgram Processed 561,000,000 records. Elapsed time: 01:56:08s. Time for last 1,000,000: 10s. Last read position: chr22:20,668,106 INFO 2026-06-03 22:01:13 SinglePassSamProgram Processed 562,000,000 records. Elapsed time: 01:56:18s. Time for last 1,000,000: 9s. Last read position: chr22:23,800,972 INFO 2026-06-03 22:01:22 SinglePassSamProgram Processed 563,000,000 records. Elapsed time: 01:56:27s. Time for last 1,000,000: 8s. Last read position: chr22:29,282,478 INFO 2026-06-03 22:01:38 SinglePassSamProgram Processed 564,000,000 records. Elapsed time: 01:56:42s. Time for last 1,000,000: 15s. Last read position: chr22:30,935,098 INFO 2026-06-03 22:01:52 SinglePassSamProgram Processed 565,000,000 records. Elapsed time: 01:56:56s. Time for last 1,000,000: 14s. Last read position: chr22:36,289,235 INFO 2026-06-03 22:01:58 SinglePassSamProgram Processed 566,000,000 records. Elapsed time: 01:57:03s. Time for last 1,000,000: 6s. Last read position: chr22:37,838,500 INFO 2026-06-03 22:02:07 SinglePassSamProgram Processed 567,000,000 records. Elapsed time: 01:57:11s. Time for last 1,000,000: 8s. Last read position: chr22:39,521,812 INFO 2026-06-03 22:02:19 SinglePassSamProgram Processed 568,000,000 records. Elapsed time: 01:57:23s. Time for last 1,000,000: 11s. Last read position: chr22:41,663,680 INFO 2026-06-03 22:02:24 SinglePassSamProgram Processed 569,000,000 records. Elapsed time: 01:57:29s. Time for last 1,000,000: 5s. Last read position: chr22:46,287,134 INFO 2026-06-03 22:02:35 SinglePassSamProgram Processed 570,000,000 records. Elapsed time: 01:57:40s. Time for last 1,000,000: 10s. Last read position: chr22:50,462,002 INFO 2026-06-03 22:02:40 SinglePassSamProgram Processed 571,000,000 records. Elapsed time: 01:57:45s. Time for last 1,000,000: 4s. Last read position: chrX:3,311,038 INFO 2026-06-03 22:02:47 SinglePassSamProgram Processed 572,000,000 records. Elapsed time: 01:57:51s. Time for last 1,000,000: 6s. Last read position: chrX:17,801,935 INFO 2026-06-03 22:02:55 SinglePassSamProgram Processed 573,000,000 records. Elapsed time: 01:58:00s. Time for last 1,000,000: 8s. Last read position: chrX:30,694,524 INFO 2026-06-03 22:03:13 SinglePassSamProgram Processed 574,000,000 records. Elapsed time: 01:58:17s. Time for last 1,000,000: 17s. Last read position: chrX:41,345,306 INFO 2026-06-03 22:03:38 SinglePassSamProgram Processed 575,000,000 records. Elapsed time: 01:58:42s. Time for last 1,000,000: 24s. Last read position: chrX:47,228,857 INFO 2026-06-03 22:03:47 SinglePassSamProgram Processed 576,000,000 records. Elapsed time: 01:58:51s. Time for last 1,000,000: 9s. Last read position: chrX:49,075,924 INFO 2026-06-03 22:03:57 SinglePassSamProgram Processed 577,000,000 records. Elapsed time: 01:59:02s. Time for last 1,000,000: 10s. Last read position: chrX:53,551,078 INFO 2026-06-03 22:04:16 SinglePassSamProgram Processed 578,000,000 records. Elapsed time: 01:59:20s. Time for last 1,000,000: 18s. Last read position: chrX:68,838,713 INFO 2026-06-03 22:04:29 SinglePassSamProgram Processed 579,000,000 records. Elapsed time: 01:59:33s. Time for last 1,000,000: 13s. Last read position: chrX:72,208,286 INFO 2026-06-03 22:04:43 SinglePassSamProgram Processed 580,000,000 records. Elapsed time: 01:59:48s. Time for last 1,000,000: 14s. Last read position: chrX:77,682,421 INFO 2026-06-03 22:04:54 SinglePassSamProgram Processed 581,000,000 records. Elapsed time: 01:59:58s. Time for last 1,000,000: 10s. Last read position: chrX:85,345,781 INFO 2026-06-03 22:05:02 SinglePassSamProgram Processed 582,000,000 records. Elapsed time: 02:00:06s. Time for last 1,000,000: 8s. Last read position: chrX:101,398,881 INFO 2026-06-03 22:05:06 SinglePassSamProgram Processed 583,000,000 records. Elapsed time: 02:00:11s. Time for last 1,000,000: 4s. Last read position: chrX:109,542,534 INFO 2026-06-03 22:05:14 SinglePassSamProgram Processed 584,000,000 records. Elapsed time: 02:00:19s. Time for last 1,000,000: 8s. Last read position: chrX:119,590,710 INFO 2026-06-03 22:05:31 SinglePassSamProgram Processed 585,000,000 records. Elapsed time: 02:00:36s. Time for last 1,000,000: 16s. Last read position: chrX:124,077,988 INFO 2026-06-03 22:05:43 SinglePassSamProgram Processed 586,000,000 records. Elapsed time: 02:00:47s. Time for last 1,000,000: 11s. Last read position: chrX:134,807,311 INFO 2026-06-03 22:05:50 SinglePassSamProgram Processed 587,000,000 records. Elapsed time: 02:00:55s. Time for last 1,000,000: 7s. Last read position: chrX:152,827,854 INFO 2026-06-03 22:06:00 SinglePassSamProgram Processed 588,000,000 records. Elapsed time: 02:01:04s. Time for last 1,000,000: 9s. Last read position: chrX:153,920,704 INFO 2026-06-03 22:06:13 SinglePassSamProgram Processed 589,000,000 records. Elapsed time: 02:01:17s. Time for last 1,000,000: 13s. Last read position: chrX:154,360,493 INFO 2026-06-03 22:06:27 SinglePassSamProgram Processed 590,000,000 records. Elapsed time: 02:01:31s. Time for last 1,000,000: 14s. Last read position: chrX:154,487,466 INFO 2026-06-03 22:06:31 SinglePassSamProgram Processed 591,000,000 records. Elapsed time: 02:01:36s. Time for last 1,000,000: 4s. Last read position: chrM:7,188 INFO 2026-06-03 22:06:32 SinglePassSamProgram Processed 592,000,000 records. Elapsed time: 02:01:37s. Time for last 1,000,000: 0s. Last read position: GL000220.1:158,150 INFO 2026-06-03 22:06:33 SinglePassSamProgram Processed 593,000,000 records. Elapsed time: 02:01:37s. Time for last 1,000,000: 0s. Last read position: KI270733.1:133,663 INFO 2026-06-03 22:06:34 SinglePassSamProgram Processed 594,000,000 records. Elapsed time: 02:01:38s. Time for last 1,000,000: 0s. Last read position: */* INFO 2026-06-03 22:06:34 SinglePassSamProgram Processed 595,000,000 records. Elapsed time: 02:01:39s. Time for last 1,000,000: 0s. Last read position: */* INFO 2026-06-03 22:06:35 SinglePassSamProgram Processed 596,000,000 records. Elapsed time: 02:01:39s. Time for last 1,000,000: 0s. Last read position: */* [Wed Jun 03 22:06:37 GMT 2026] picard.analysis.CollectRnaSeqMetrics done. Elapsed time: 121.75 minutes. Runtime.totalMemory()=3433562112