File Info

Filename
fi_workdir/Log.final.out
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/67/3060268aac61b3c86b18e965688048/fi_workdir/Log.final.out
Size
2.0 KB
Attempt
                                 Started job on |	Jun 03 21:08:32
                             Started mapping on |	Jun 03 21:15:09
                                    Finished on |	Jun 03 22:07:52
       Mapping speed, Million of reads per hour |	266.15

                          Number of input reads |	233841916
                      Average input read length |	247
                                    UNIQUE READS:
                   Uniquely mapped reads number |	223403253
                        Uniquely mapped reads % |	95.54%
                          Average mapped length |	247.02
                       Number of splices: Total |	183156102
            Number of splices: Annotated (sjdb) |	179180229
                       Number of splices: GT/AG |	180937593
                       Number of splices: GC/AG |	1354321
                       Number of splices: AT/AC |	160142
               Number of splices: Non-canonical |	704046
                      Mismatch rate per base, % |	0.30%
                         Deletion rate per base |	0.02%
                        Deletion average length |	1.93
                        Insertion rate per base |	0.00%
                       Insertion average length |	1.72
                             MULTI-MAPPING READS:
        Number of reads mapped to multiple loci |	8006202
             % of reads mapped to multiple loci |	3.42%
        Number of reads mapped to too many loci |	417505
             % of reads mapped to too many loci |	0.18%
                                  UNMAPPED READS:
  Number of reads unmapped: too many mismatches |	0
       % of reads unmapped: too many mismatches |	0.00%
            Number of reads unmapped: too short |	1624910
                 % of reads unmapped: too short |	0.69%
                Number of reads unmapped: other |	390046
                     % of reads unmapped: other |	0.17%
                                  CHIMERIC READS:
                       Number of chimeric reads |	0
                            % of chimeric reads |	0.00%