File Info

Filename
.command.log
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/e9/1ad22dd3c7a5aef133bb8daca66ee9/.command.log
Size
5.6 KB
Task
NFCORE_RNAFUSION:RNAFUSION:FUSIONREPORT_WORKFLOW:FUSIONREPORT (aih-tih-sc-2e5fe9-R1_A23YTGFLT4_1)
Attempt

Content

View in new tab 
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/8b/d4bfe08ecf5830a824fa8532254c46/aih-tih-sc-2e5fe9-R1_A23YTGFLT4_1.starfusion.starfusion.fusion_predictions.filtered_pass_only.tsv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/stage-e543dae6-5fea-4720-bfb6-150bf1ff20d4/82/1bfcba5045fc10a52ca200a4890a9a/dummy_file_fusioncatcher.txt
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/e9/1ad22dd3c7a5aef133bb8daca66ee9/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/e9/1ad22dd3c7a5aef133bb8daca66ee9/.command.run
  Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/rna/GRCh38/fusion_report_db
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/6c/29f95c796c96c095247e8d7c15f8fb/aih-tih-sc-2e5fe9-R1_A23YTGFLT4_1.arriba.fusions.filtered_pass_only.tsv
==> STAGING COMPLETE (6 inputs)

Running application...
ASAP1--CCDC26
starfusion
arriba
LINC00381--NKAIN2
starfusion
GUCY1B2--NKAIN2
starfusion
PRSS27--TPSB2
starfusion
KCNMB2-AS1--ADGRL3
starfusion
BBOX1-AS1--ADGRL3
starfusion
TLK2--FAM157A
starfusion
PHLDB2--NECTIN3
starfusion
arriba
UBE2Q2P1--GOLGA6L10
starfusion
NECTIN3--PHLDB2
starfusion
arriba
FBXO25--AC240565.1
starfusion
PMS2P6--CCDC146
starfusion
TVP23C--CDRT4
arriba
STX16--NPEPL1
arriba
LRCH1--GRID1
arriba
SELENOO--TUBGCP6
arriba
CYCTP--PDE11A
arriba
AC015911.9--SLFN12L
arriba
NECTIN3--PLCXD2
arriba
PLCXD2--NECTIN3
arriba
AC092807.3--DDAH1
arriba
TLK2P1--AC110079.1
arriba
SVEP1--MYLK
arriba

  0%|          | 0/23 [00:00<?, ?it/s]
Processing ASAP1--CCDC26:   0%|          | 0/23 [00:00<?, ?it/s]
Processing ASAP1--CCDC26:   4%|▍         | 1/23 [00:00<00:02,  8.76it/s]
Processing LINC00381--NKAIN2:   4%|▍         | 1/23 [00:00<00:02,  8.76it/s]
Processing LINC00381--NKAIN2:   9%|▊         | 2/23 [00:00<00:02,  9.12it/s]
Processing GUCY1B2--NKAIN2:   9%|▊         | 2/23 [00:00<00:02,  9.12it/s]  
Processing GUCY1B2--NKAIN2:  13%|█▎        | 3/23 [00:00<00:02,  9.27it/s]
Processing PRSS27--TPSB2:  13%|█▎        | 3/23 [00:00<00:02,  9.27it/s]  
Processing PRSS27--TPSB2:  17%|█▋        | 4/23 [00:00<00:02,  9.34it/s]
Processing KCNMB2-AS1--ADGRL3:  17%|█▋        | 4/23 [00:00<00:02,  9.34it/s]
Processing KCNMB2-AS1--ADGRL3:  22%|██▏       | 5/23 [00:00<00:01,  9.38it/s]
Processing BBOX1-AS1--ADGRL3:  22%|██▏       | 5/23 [00:00<00:01,  9.38it/s] 
Processing BBOX1-AS1--ADGRL3:  26%|██▌       | 6/23 [00:00<00:01,  9.40it/s]
Processing TLK2--FAM157A:  26%|██▌       | 6/23 [00:00<00:01,  9.40it/s]    
Processing TLK2--FAM157A:  30%|███       | 7/23 [00:00<00:01,  9.41it/s]
Processing PHLDB2--NECTIN3:  30%|███       | 7/23 [00:00<00:01,  9.41it/s]
Processing PHLDB2--NECTIN3:  35%|███▍      | 8/23 [00:00<00:01,  9.43it/s]
Processing UBE2Q2P1--GOLGA6L10:  35%|███▍      | 8/23 [00:00<00:01,  9.43it/s]
Processing UBE2Q2P1--GOLGA6L10:  39%|███▉      | 9/23 [00:00<00:01,  9.44it/s]
Processing NECTIN3--PHLDB2:  39%|███▉      | 9/23 [00:00<00:01,  9.44it/s]    
Processing NECTIN3--PHLDB2:  43%|████▎     | 10/23 [00:01<00:01,  9.44it/s]
Processing FBXO25--AC240565.1:  43%|████▎     | 10/23 [00:01<00:01,  9.44it/s]
Processing FBXO25--AC240565.1:  48%|████▊     | 11/23 [00:01<00:01,  9.44it/s]
Processing PMS2P6--CCDC146:  48%|████▊     | 11/23 [00:01<00:01,  9.44it/s]   
Processing PMS2P6--CCDC146:  52%|█████▏    | 12/23 [00:01<00:01,  9.42it/s]
Processing TVP23C--CDRT4:  52%|█████▏    | 12/23 [00:01<00:01,  9.42it/s]  
Processing TVP23C--CDRT4:  57%|█████▋    | 13/23 [00:01<00:01,  9.42it/s]
Processing STX16--NPEPL1:  57%|█████▋    | 13/23 [00:01<00:01,  9.42it/s]
Processing STX16--NPEPL1:  61%|██████    | 14/23 [00:01<00:00,  9.43it/s]
Processing LRCH1--GRID1:  61%|██████    | 14/23 [00:01<00:00,  9.43it/s] 
Processing LRCH1--GRID1:  65%|██████▌   | 15/23 [00:01<00:00,  9.44it/s]
Processing SELENOO--TUBGCP6:  65%|██████▌   | 15/23 [00:01<00:00,  9.44it/s]
Processing SELENOO--TUBGCP6:  70%|██████▉   | 16/23 [00:01<00:00,  9.44it/s]
Processing CYCTP--PDE11A:  70%|██████▉   | 16/23 [00:01<00:00,  9.44it/s]   
Processing CYCTP--PDE11A:  74%|███████▍  | 17/23 [00:01<00:00,  9.44it/s]
Processing AC015911.9--SLFN12L:  74%|███████▍  | 17/23 [00:01<00:00,  9.44it/s]
Processing AC015911.9--SLFN12L:  78%|███████▊  | 18/23 [00:01<00:00,  9.45it/s]
Processing NECTIN3--PLCXD2:  78%|███████▊  | 18/23 [00:01<00:00,  9.45it/s]    
Processing NECTIN3--PLCXD2:  83%|████████▎ | 19/23 [00:02<00:00,  9.45it/s]
Processing PLCXD2--NECTIN3:  83%|████████▎ | 19/23 [00:02<00:00,  9.45it/s]
Processing PLCXD2--NECTIN3:  87%|████████▋ | 20/23 [00:02<00:00,  9.46it/s]
Processing AC092807.3--DDAH1:  87%|████████▋ | 20/23 [00:02<00:00,  9.46it/s]
Processing AC092807.3--DDAH1:  91%|█████████▏| 21/23 [00:02<00:00,  9.44it/s]
Processing TLK2P1--AC110079.1:  91%|█████████▏| 21/23 [00:02<00:00,  9.44it/s]
Processing TLK2P1--AC110079.1:  96%|█████████▌| 22/23 [00:02<00:00,  9.44it/s]
Processing SVEP1--MYLK:  96%|█████████▌| 22/23 [00:02<00:00,  9.44it/s]       
Processing SVEP1--MYLK: 100%|██████████| 23/23 [00:02<00:00,  9.45it/s]
Processing SVEP1--MYLK: 100%|██████████| 23/23 [00:02<00:00,  9.41it/s]
cat: fusion_report_db/DB-timestamp.txt: No such file or directory