File Info

Filename
aih-tih-sc-3abdf4-R1_A23YTGFLT4_1.Log.final.out
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/a4/70ea73390d494f815dab3a1fc5117d/aih-tih-sc-3abdf4-R1_A23YTGFLT4_1.Log.final.out
Size
2.0 KB
Attempt
                                 Started job on |	Jun 03 19:05:02
                             Started mapping on |	Jun 03 19:07:05
                                    Finished on |	Jun 03 19:48:25
       Mapping speed, Million of reads per hour |	347.78

                          Number of input reads |	239583971
                      Average input read length |	240
                                    UNIQUE READS:
                   Uniquely mapped reads number |	227683413
                        Uniquely mapped reads % |	95.03%
                          Average mapped length |	239.83
                       Number of splices: Total |	205393339
            Number of splices: Annotated (sjdb) |	202701690
                       Number of splices: GT/AG |	203274716
                       Number of splices: GC/AG |	1567923
                       Number of splices: AT/AC |	169212
               Number of splices: Non-canonical |	381488
                      Mismatch rate per base, % |	0.30%
                         Deletion rate per base |	0.01%
                        Deletion average length |	1.02
                        Insertion rate per base |	0.00%
                       Insertion average length |	1.67
                             MULTI-MAPPING READS:
        Number of reads mapped to multiple loci |	7627988
             % of reads mapped to multiple loci |	3.18%
        Number of reads mapped to too many loci |	388490
             % of reads mapped to too many loci |	0.16%
                                  UNMAPPED READS:
  Number of reads unmapped: too many mismatches |	420855
       % of reads unmapped: too many mismatches |	0.18%
            Number of reads unmapped: too short |	1721103
                 % of reads unmapped: too short |	0.72%
                Number of reads unmapped: other |	228845
                     % of reads unmapped: other |	0.10%
                                  CHIMERIC READS:
                       Number of chimeric reads |	2643896
                            % of chimeric reads |	1.10%