Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/94/bc1465fccb5401f3d7d71160a20231/aih-tih-sc-538ae3-R1_A23YTGFLT4_1.arriba.fusions.filtered_pass_only.tsv
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/stage-e543dae6-5fea-4720-bfb6-150bf1ff20d4/82/1bfcba5045fc10a52ca200a4890a9a/dummy_file_fusioncatcher.txt
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/5b/f679135a077bbadc683ecf3b8129f8/.command.sh
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/5b/f679135a077bbadc683ecf3b8129f8/.command.run
Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/rna/GRCh38/fusion_report_db
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/c8/a995ba1efda66c751c72c9ce7512af/aih-tih-sc-538ae3-R1_A23YTGFLT4_1.starfusion.starfusion.fusion_predictions.filtered_pass_only.tsv
==> STAGING COMPLETE (6 inputs)
[32mRunning application...[0m
MTPN--IFT80
starfusion
arriba
ADAP1--DNAAF5
starfusion
TLK2--AC240565.1
starfusion
SNU13--LLPH
starfusion
ADAP1--PCBP2
starfusion
ARHGEF1--LTBP4
starfusion
STX16--NPEPL1
arriba
TVP23C--CDRT4
arriba
PCDHGB2--PCDHGC4
arriba
PCDHGB2--PCDHGB6
arriba
PCDHGB2--PCDHGA11
arriba
PCDHGB2--PCDHGA8
arriba
PCDHGB2--PCDHGA9
arriba
PCDHGB2--PCDHGC5
arriba
PCDHGB2--PCDHGB7
arriba
PCDHGB2--PCDHGA12
arriba
PCDHGB2--PCDHGA10
arriba
PCDHGB2--PCDHGC3
arriba
CRYZL2P--SEC16B
arriba
AL669831.4--SEPTIN14
arriba
AC015911.9--SLFN12L
arriba
AL669831.1--SEPTIN14
arriba
0%| | 0/22 [00:00<?, ?it/s]
Processing MTPN--IFT80: 0%| | 0/22 [00:00<?, ?it/s]
Processing MTPN--IFT80: 5%|▍ | 1/22 [00:00<00:02, 9.03it/s]
Processing ADAP1--DNAAF5: 5%|▍ | 1/22 [00:00<00:02, 9.03it/s]
Processing ADAP1--DNAAF5: 9%|▉ | 2/22 [00:00<00:02, 9.30it/s]
Processing TLK2--AC240565.1: 9%|▉ | 2/22 [00:00<00:02, 9.30it/s]
Processing TLK2--AC240565.1: 14%|█▎ | 3/22 [00:00<00:02, 9.40it/s]
Processing SNU13--LLPH: 14%|█▎ | 3/22 [00:00<00:02, 9.40it/s]
Processing SNU13--LLPH: 18%|█▊ | 4/22 [00:00<00:01, 9.44it/s]
Processing ADAP1--PCBP2: 18%|█▊ | 4/22 [00:00<00:01, 9.44it/s]
Processing ADAP1--PCBP2: 23%|██▎ | 5/22 [00:00<00:01, 9.47it/s]
Processing ARHGEF1--LTBP4: 23%|██▎ | 5/22 [00:00<00:01, 9.47it/s]
Processing ARHGEF1--LTBP4: 27%|██▋ | 6/22 [00:00<00:01, 9.47it/s]
Processing STX16--NPEPL1: 27%|██▋ | 6/22 [00:00<00:01, 9.47it/s]
Processing STX16--NPEPL1: 32%|███▏ | 7/22 [00:00<00:01, 9.48it/s]
Processing TVP23C--CDRT4: 32%|███▏ | 7/22 [00:00<00:01, 9.48it/s]
Processing TVP23C--CDRT4: 36%|███▋ | 8/22 [00:00<00:01, 9.48it/s]
Processing PCDHGB2--PCDHGC4: 36%|███▋ | 8/22 [00:00<00:01, 9.48it/s]
Processing PCDHGB2--PCDHGC4: 41%|████ | 9/22 [00:00<00:01, 9.47it/s]
Processing PCDHGB2--PCDHGB6: 41%|████ | 9/22 [00:00<00:01, 9.47it/s]
Processing PCDHGB2--PCDHGB6: 45%|████▌ | 10/22 [00:01<00:01, 9.48it/s]
Processing PCDHGB2--PCDHGA11: 45%|████▌ | 10/22 [00:01<00:01, 9.48it/s]
Processing PCDHGB2--PCDHGA11: 50%|█████ | 11/22 [00:01<00:01, 9.48it/s]
Processing PCDHGB2--PCDHGA8: 50%|█████ | 11/22 [00:01<00:01, 9.48it/s]
Processing PCDHGB2--PCDHGA8: 55%|█████▍ | 12/22 [00:01<00:01, 9.48it/s]
Processing PCDHGB2--PCDHGA9: 55%|█████▍ | 12/22 [00:01<00:01, 9.48it/s]
Processing PCDHGB2--PCDHGA9: 59%|█████▉ | 13/22 [00:01<00:00, 9.48it/s]
Processing PCDHGB2--PCDHGC5: 59%|█████▉ | 13/22 [00:01<00:00, 9.48it/s]
Processing PCDHGB2--PCDHGC5: 64%|██████▎ | 14/22 [00:01<00:00, 9.48it/s]
Processing PCDHGB2--PCDHGB7: 64%|██████▎ | 14/22 [00:01<00:00, 9.48it/s]
Processing PCDHGB2--PCDHGB7: 68%|██████▊ | 15/22 [00:01<00:00, 9.48it/s]
Processing PCDHGB2--PCDHGA12: 68%|██████▊ | 15/22 [00:01<00:00, 9.48it/s]
Processing PCDHGB2--PCDHGA12: 73%|███████▎ | 16/22 [00:01<00:00, 9.48it/s]
Processing PCDHGB2--PCDHGA10: 73%|███████▎ | 16/22 [00:01<00:00, 9.48it/s]
Processing PCDHGB2--PCDHGA10: 77%|███████▋ | 17/22 [00:01<00:00, 9.47it/s]
Processing PCDHGB2--PCDHGC3: 77%|███████▋ | 17/22 [00:01<00:00, 9.47it/s]
Processing PCDHGB2--PCDHGC3: 82%|████████▏ | 18/22 [00:01<00:00, 9.47it/s]
Processing CRYZL2P--SEC16B: 82%|████████▏ | 18/22 [00:01<00:00, 9.47it/s]
Processing CRYZL2P--SEC16B: 86%|████████▋ | 19/22 [00:02<00:00, 9.48it/s]
Processing AL669831.4--SEPTIN14: 86%|████████▋ | 19/22 [00:02<00:00, 9.48it/s]
Processing AL669831.4--SEPTIN14: 91%|█████████ | 20/22 [00:02<00:00, 9.47it/s]
Processing AC015911.9--SLFN12L: 91%|█████████ | 20/22 [00:02<00:00, 9.47it/s]
Processing AC015911.9--SLFN12L: 95%|█████████▌| 21/22 [00:02<00:00, 9.48it/s]
Processing AL669831.1--SEPTIN14: 95%|█████████▌| 21/22 [00:02<00:00, 9.48it/s]
Processing AL669831.1--SEPTIN14: 100%|██████████| 22/22 [00:02<00:00, 9.48it/s]
Processing AL669831.1--SEPTIN14: 100%|██████████| 22/22 [00:02<00:00, 9.46it/s]
cat: fusion_report_db/DB-timestamp.txt: No such file or directory