Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/stage-e543dae6-5fea-4720-bfb6-150bf1ff20d4/82/1bfcba5045fc10a52ca200a4890a9a/dummy_file_fusioncatcher.txt
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/0f/978869d244fe14dd52c1558bc25cea/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/0f/978869d244fe14dd52c1558bc25cea/.command.run
  Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/rna/GRCh38/fusion_report_db
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/67/8c5aedc7e0d24231bba9e2ce18b1e8/aih-tih-sc-3abdf4-R1_A23YTGFLT4_1.arriba.fusions.filtered_pass_only.tsv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/73/e08e07cad5741ed57ebf2125d5357a/aih-tih-sc-3abdf4-R1_A23YTGFLT4_1.starfusion.starfusion.fusion_predictions.filtered_pass_only.tsv
==> STAGING COMPLETE (6 inputs)

Running application...

  0%|          | 0/30 [00:00<?, ?it/s]E2F3--LNC-LBCS
starfusion
arriba
GPAT4--ANK1
starfusion
arriba
EXOC6B--CTNNA2
starfusion
arriba
MBOAT1--LNC-LBCS
starfusion
arriba
SNX29--CIITA
starfusion
arriba
COP1--TRAPPC9
starfusion
arriba
RPARP-AS1--SUFU
starfusion
arriba
SAE1--CYP2B7P
starfusion
arriba
TLK2--AC240565.1
starfusion
DYRK1A--OSER1
starfusion
RYK--LINC02000
starfusion
E2F3--AL451080.1
arriba
E2F3--AL031767.1
arriba
TVP23C--CDRT4
arriba
BIRC6--PKD1L2
arriba
IGFL1P2--HIF3A
arriba
SMCHD1--LDLRAD4
arriba
ZC3H4--AL513478.3
arriba
ZC3H4--CDRT15P12
arriba
PCDHA7--PCDHAC2
arriba
PCDHA7--PCDHAC1
arriba
PCDHA7--PCDHA13
arriba
TAF1--ZCRB1P1
arriba
TAF1--RHOG2P
arriba
AL451080.1--MBOAT1
arriba
AL031767.1--MBOAT1
arriba
HERC2--AC024405.1
arriba
HERC2--OR4C50P
arriba
CDKAL1--LNC-LBCS
arriba
COX16--MIDEAS
arriba

Processing E2F3--LNC-LBCS:   0%|          | 0/30 [00:00<?, ?it/s]
Processing E2F3--LNC-LBCS:   3%|▎         | 1/30 [00:00<00:03,  9.21it/s]
Processing GPAT4--ANK1:   3%|▎         | 1/30 [00:00<00:03,  9.21it/s]   
Processing GPAT4--ANK1:   7%|▋         | 2/30 [00:00<00:02,  9.42it/s]
Processing EXOC6B--CTNNA2:   7%|▋         | 2/30 [00:00<00:02,  9.42it/s]
Processing EXOC6B--CTNNA2:  10%|█         | 3/30 [00:00<00:02,  9.50it/s]
Processing MBOAT1--LNC-LBCS:  10%|█         | 3/30 [00:00<00:02,  9.50it/s]
Processing MBOAT1--LNC-LBCS:  13%|█▎        | 4/30 [00:00<00:02,  9.53it/s]
Processing SNX29--CIITA:  13%|█▎        | 4/30 [00:00<00:02,  9.53it/s]    
Processing SNX29--CIITA:  17%|█▋        | 5/30 [00:00<00:02,  9.54it/s]
Processing COP1--TRAPPC9:  17%|█▋        | 5/30 [00:00<00:02,  9.54it/s]
Processing COP1--TRAPPC9:  20%|██        | 6/30 [00:00<00:02,  9.51it/s]
Processing RPARP-AS1--SUFU:  20%|██        | 6/30 [00:00<00:02,  9.51it/s]
Processing RPARP-AS1--SUFU:  23%|██▎       | 7/30 [00:00<00:02,  9.52it/s]
Processing SAE1--CYP2B7P:  23%|██▎       | 7/30 [00:00<00:02,  9.52it/s]  
Processing SAE1--CYP2B7P:  27%|██▋       | 8/30 [00:00<00:02,  9.53it/s]
Processing TLK2--AC240565.1:  27%|██▋       | 8/30 [00:00<00:02,  9.53it/s]
Processing TLK2--AC240565.1:  30%|███       | 9/30 [00:00<00:02,  9.54it/s]
Processing DYRK1A--OSER1:  30%|███       | 9/30 [00:00<00:02,  9.54it/s]   
Processing DYRK1A--OSER1:  33%|███▎      | 10/30 [00:01<00:02,  9.55it/s]
Processing RYK--LINC02000:  33%|███▎      | 10/30 [00:01<00:02,  9.55it/s]
Processing RYK--LINC02000:  37%|███▋      | 11/30 [00:01<00:01,  9.52it/s]
Processing E2F3--AL451080.1:  37%|███▋      | 11/30 [00:01<00:01,  9.52it/s]
Processing E2F3--AL451080.1:  40%|████      | 12/30 [00:01<00:01,  9.53it/s]
Processing E2F3--AL031767.1:  40%|████      | 12/30 [00:01<00:01,  9.53it/s]
Processing E2F3--AL031767.1:  43%|████▎     | 13/30 [00:01<00:01,  9.54it/s]
Processing TVP23C--CDRT4:  43%|████▎     | 13/30 [00:01<00:01,  9.54it/s]   
Processing TVP23C--CDRT4:  47%|████▋     | 14/30 [00:01<00:01,  9.55it/s]
Processing BIRC6--PKD1L2:  47%|████▋     | 14/30 [00:01<00:01,  9.55it/s]
Processing BIRC6--PKD1L2:  50%|█████     | 15/30 [00:01<00:01,  9.54it/s]
Processing IGFL1P2--HIF3A:  50%|█████     | 15/30 [00:01<00:01,  9.54it/s]
Processing IGFL1P2--HIF3A:  53%|█████▎    | 16/30 [00:01<00:01,  9.52it/s]
Processing SMCHD1--LDLRAD4:  53%|█████▎    | 16/30 [00:01<00:01,  9.52it/s]
Processing SMCHD1--LDLRAD4:  57%|█████▋    | 17/30 [00:01<00:01,  9.54it/s]
Processing ZC3H4--AL513478.3:  57%|█████▋    | 17/30 [00:01<00:01,  9.54it/s]
Processing ZC3H4--AL513478.3:  60%|██████    | 18/30 [00:01<00:01,  9.54it/s]
Processing ZC3H4--CDRT15P12:  60%|██████    | 18/30 [00:01<00:01,  9.54it/s] 
Processing ZC3H4--CDRT15P12:  63%|██████▎   | 19/30 [00:01<00:01,  9.52it/s]
Processing PCDHA7--PCDHAC2:  63%|██████▎   | 19/30 [00:01<00:01,  9.52it/s] 
Processing PCDHA7--PCDHAC2:  67%|██████▋   | 20/30 [00:02<00:01,  9.53it/s]
Processing PCDHA7--PCDHAC1:  67%|██████▋   | 20/30 [00:02<00:01,  9.53it/s]
Processing PCDHA7--PCDHAC1:  70%|███████   | 21/30 [00:02<00:00,  9.54it/s]
Processing PCDHA7--PCDHA13:  70%|███████   | 21/30 [00:02<00:00,  9.54it/s]
Processing PCDHA7--PCDHA13:  73%|███████▎  | 22/30 [00:02<00:00,  9.54it/s]
Processing TAF1--ZCRB1P1:  73%|███████▎  | 22/30 [00:02<00:00,  9.54it/s]  
Processing TAF1--ZCRB1P1:  77%|███████▋  | 23/30 [00:02<00:00,  9.52it/s]
Processing TAF1--RHOG2P:  77%|███████▋  | 23/30 [00:02<00:00,  9.52it/s] 
Processing TAF1--RHOG2P:  80%|████████  | 24/30 [00:02<00:00,  9.53it/s]
Processing AL451080.1--MBOAT1:  80%|████████  | 24/30 [00:02<00:00,  9.53it/s]
Processing AL451080.1--MBOAT1:  83%|████████▎ | 25/30 [00:02<00:00,  9.53it/s]
Processing AL031767.1--MBOAT1:  83%|████████▎ | 25/30 [00:02<00:00,  9.53it/s]
Processing AL031767.1--MBOAT1:  87%|████████▋ | 26/30 [00:02<00:00,  9.52it/s]
Processing HERC2--AC024405.1:  87%|████████▋ | 26/30 [00:02<00:00,  9.52it/s] 
Processing HERC2--AC024405.1:  90%|█████████ | 27/30 [00:02<00:00,  9.52it/s]
Processing HERC2--OR4C50P:  90%|█████████ | 27/30 [00:02<00:00,  9.52it/s]   
Processing HERC2--OR4C50P:  93%|█████████▎| 28/30 [00:02<00:00,  9.54it/s]
Processing CDKAL1--LNC-LBCS:  93%|█████████▎| 28/30 [00:02<00:00,  9.54it/s]
Processing CDKAL1--LNC-LBCS:  97%|█████████▋| 29/30 [00:03<00:00,  9.52it/s]
Processing COX16--MIDEAS:  97%|█████████▋| 29/30 [00:03<00:00,  9.52it/s]   
Processing COX16--MIDEAS: 100%|██████████| 30/30 [00:03<00:00,  9.52it/s]
Processing COX16--MIDEAS: 100%|██████████| 30/30 [00:03<00:00,  9.52it/s]
cat: fusion_report_db/DB-timestamp.txt: No such file or directory