Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/a3/3474f0840fb85346238d4688293a58/aih-tih-sc-377071-R1_A23YTGFLT4_1.arriba.fusions.filtered_pass_only.tsv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/8b/922c689b77c51f8f6a6be5e1144126/aih-tih-sc-377071-R1_A23YTGFLT4_1.starfusion.starfusion.fusion_predictions.filtered_pass_only.tsv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/stage-e543dae6-5fea-4720-bfb6-150bf1ff20d4/82/1bfcba5045fc10a52ca200a4890a9a/dummy_file_fusioncatcher.txt
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/77/33464588d14cdff9be1c5839769105/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/77/33464588d14cdff9be1c5839769105/.command.run
  Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/rna/GRCh38/fusion_report_db
==> STAGING COMPLETE (6 inputs)

Running application...
STAT3--ACLY
starfusion
arriba
LAMA3--RMC1
starfusion
arriba
STK3--DPH6
starfusion
arriba
SNTA1--EIF2S2
starfusion
arriba
MSI2--AC004448.2
starfusion
arriba
TLK2--AC240565.1
starfusion
EGF--LINC01722
starfusion
arriba
STX16--NPEPL1
starfusion
arriba
DPH6--STK3
starfusion
AC005993.1--RGS6
starfusion
arriba
GUCY1B2--NKAIN2
starfusion
TVP23C--CDRT4
arriba
PCDHGB2--PCDHGA8
arriba
PCDHGB2--PCDHGB6
arriba
PCDHGB2--PCDHGC5
arriba
PCDHGB2--PCDHGC4
arriba
PCDHGB2--PCDHGC3
arriba
PCDHGB2--PCDHGA11
arriba
PCDHGB2--PCDHGA9
arriba
PCDHGB2--PCDHGB7
arriba
PCDHGB2--PCDHGA12
arriba
PCDHGB2--PCDHGA10
arriba
PCDHGA2--PCDHGA8
arriba
PCDHGA2--PCDHGB6
arriba
PCDHGA2--PCDHGC5
arriba
PCDHGA5--PCDHGA8
arriba
PCDHGA2--PCDHGC4
arriba
PCDHGA2--PCDHGC3
arriba
PCDHGA5--PCDHGB6
arriba
PCDHGA5--PCDHGC5
arriba
PCDHGA2--PCDHGA11
arriba
PCDHGA5--PCDHGC4
arriba
PCDHGA2--PCDHGA9
arriba
PCDHGA2--PCDHGB7
arriba
PCDHGA5--PCDHGC3
arriba
PCDHGA5--PCDHGA11
arriba
PCDHGA2--PCDHGA12
arriba
PCDHGA2--PCDHGA10
arriba
PCDHGA5--PCDHGA9
arriba
PCDHGA5--PCDHGB7
arriba
PCDHGA5--PCDHGA12
arriba
PCDHGA5--PCDHGA10
arriba
PCDHGB3--PCDHGA8
arriba
PCDHGB3--PCDHGB6
arriba
PCDHGB3--PCDHGC5
arriba
PCDHGB3--PCDHGC4
arriba
PCDHGB3--PCDHGC3
arriba
PCDHGB3--PCDHGA11
arriba
PCDHGB3--PCDHGA9
arriba
PCDHGB3--PCDHGB7
arriba
PCDHGB3--PCDHGA12
arriba
PCDHGB3--PCDHGA10
arriba
PCDHA10--PCDHAC2
arriba
PCDHA10--PCDHAC1
arriba
PCDHGA6--PCDHGA8
arriba
PCDHGA6--PCDHGB6
arriba
PCDHGA6--PCDHGC5
arriba
PCDHGA6--PCDHGC4
arriba
PCDHA10--PCDHA13
arriba
PCDHGA6--PCDHGC3
arriba
PCDHGA6--PCDHGA11
arriba
PCDHGA6--PCDHGA9
arriba
PCDHGA6--PCDHGB7
arriba
PCDHGA6--PCDHGA12
arriba
PCDHGA6--PCDHGA10
arriba
AC092807.3--DDAH1
arriba
AC015911.9--SLFN12L
arriba
EGF--LINC01723
arriba
DNAJA3--PRSS27
arriba
FGGY--LINC01725
arriba
TUBB4BP8--DUSP10
arriba
PAICSP7--DUSP10
arriba
PSMD11--ACLY
arriba
STON1--GTF2A1L
arriba
EFL1--GOLGA6L11P
arriba
MKNK1--DMBX1
arriba
EGF--SPTLC3
arriba

  0%|          | 0/77 [00:00<?, ?it/s]
Processing STAT3--ACLY:   0%|          | 0/77 [00:00<?, ?it/s]
Processing STAT3--ACLY:   1%|▏         | 1/77 [00:00<00:08,  8.69it/s]
Processing LAMA3--RMC1:   1%|▏         | 1/77 [00:00<00:08,  8.69it/s]
Processing LAMA3--RMC1:   3%|▎         | 2/77 [00:00<00:08,  9.07it/s]
Processing STK3--DPH6:   3%|▎         | 2/77 [00:00<00:08,  9.07it/s] 
Processing STK3--DPH6:   4%|▍         | 3/77 [00:00<00:08,  9.20it/s]
Processing SNTA1--EIF2S2:   4%|▍         | 3/77 [00:00<00:08,  9.20it/s]
Processing SNTA1--EIF2S2:   5%|▌         | 4/77 [00:00<00:07,  9.27it/s]
Processing MSI2--AC004448.2:   5%|▌         | 4/77 [00:00<00:07,  9.27it/s]
Processing MSI2--AC004448.2:   6%|▋         | 5/77 [00:00<00:07,  9.30it/s]
Processing TLK2--AC240565.1:   6%|▋         | 5/77 [00:00<00:07,  9.30it/s]
Processing TLK2--AC240565.1:   8%|▊         | 6/77 [00:00<00:07,  9.32it/s]
Processing EGF--LINC01722:   8%|▊         | 6/77 [00:00<00:07,  9.32it/s]  
Processing EGF--LINC01722:   9%|▉         | 7/77 [00:00<00:07,  9.34it/s]
Processing STX16--NPEPL1:   9%|▉         | 7/77 [00:00<00:07,  9.34it/s] 
Processing STX16--NPEPL1:  10%|█         | 8/77 [00:00<00:07,  9.34it/s]
Processing DPH6--STK3:  10%|█         | 8/77 [00:00<00:07,  9.34it/s]   
Processing DPH6--STK3:  12%|█▏        | 9/77 [00:00<00:07,  9.35it/s]
Processing AC005993.1--RGS6:  12%|█▏        | 9/77 [00:00<00:07,  9.35it/s]
Processing AC005993.1--RGS6:  13%|█▎        | 10/77 [00:01<00:07,  9.36it/s]
Processing GUCY1B2--NKAIN2:  13%|█▎        | 10/77 [00:01<00:07,  9.36it/s] 
Processing GUCY1B2--NKAIN2:  14%|█▍        | 11/77 [00:01<00:07,  9.36it/s]
Processing TVP23C--CDRT4:  14%|█▍        | 11/77 [00:01<00:07,  9.36it/s]  
Processing TVP23C--CDRT4:  16%|█▌        | 12/77 [00:01<00:06,  9.36it/s]
Processing PCDHGB2--PCDHGA8:  16%|█▌        | 12/77 [00:01<00:06,  9.36it/s]
Processing PCDHGB2--PCDHGA8:  17%|█▋        | 13/77 [00:01<00:06,  9.36it/s]
Processing PCDHGB2--PCDHGB6:  17%|█▋        | 13/77 [00:01<00:06,  9.36it/s]
Processing PCDHGB2--PCDHGB6:  18%|█▊        | 14/77 [00:01<00:06,  9.36it/s]
Processing PCDHGB2--PCDHGC5:  18%|█▊        | 14/77 [00:01<00:06,  9.36it/s]
Processing PCDHGB2--PCDHGC5:  19%|█▉        | 15/77 [00:01<00:06,  9.36it/s]
Processing PCDHGB2--PCDHGC4:  19%|█▉        | 15/77 [00:01<00:06,  9.36it/s]
Processing PCDHGB2--PCDHGC4:  21%|██        | 16/77 [00:01<00:06,  9.36it/s]
Processing PCDHGB2--PCDHGC3:  21%|██        | 16/77 [00:01<00:06,  9.36it/s]
Processing PCDHGB2--PCDHGC3:  22%|██▏       | 17/77 [00:01<00:06,  9.36it/s]
Processing PCDHGB2--PCDHGA11:  22%|██▏       | 17/77 [00:01<00:06,  9.36it/s]
Processing PCDHGB2--PCDHGA11:  23%|██▎       | 18/77 [00:01<00:06,  9.36it/s]
Processing PCDHGB2--PCDHGA9:  23%|██▎       | 18/77 [00:01<00:06,  9.36it/s] 
Processing PCDHGB2--PCDHGA9:  25%|██▍       | 19/77 [00:02<00:06,  9.36it/s]
Processing PCDHGB2--PCDHGB7:  25%|██▍       | 19/77 [00:02<00:06,  9.36it/s]
Processing PCDHGB2--PCDHGB7:  26%|██▌       | 20/77 [00:02<00:06,  9.37it/s]
Processing PCDHGB2--PCDHGA12:  26%|██▌       | 20/77 [00:02<00:06,  9.37it/s]
Processing PCDHGB2--PCDHGA12:  27%|██▋       | 21/77 [00:02<00:05,  9.36it/s]
Processing PCDHGB2--PCDHGA10:  27%|██▋       | 21/77 [00:02<00:05,  9.36it/s]
Processing PCDHGB2--PCDHGA10:  29%|██▊       | 22/77 [00:02<00:05,  9.36it/s]
Processing PCDHGA2--PCDHGA8:  29%|██▊       | 22/77 [00:02<00:05,  9.36it/s] 
Processing PCDHGA2--PCDHGA8:  30%|██▉       | 23/77 [00:02<00:05,  9.36it/s]
Processing PCDHGA2--PCDHGB6:  30%|██▉       | 23/77 [00:02<00:05,  9.36it/s]
Processing PCDHGA2--PCDHGB6:  31%|███       | 24/77 [00:02<00:05,  9.36it/s]
Processing PCDHGA2--PCDHGC5:  31%|███       | 24/77 [00:02<00:05,  9.36it/s]
Processing PCDHGA2--PCDHGC5:  32%|███▏      | 25/77 [00:02<00:05,  9.36it/s]
Processing PCDHGA5--PCDHGA8:  32%|███▏      | 25/77 [00:02<00:05,  9.36it/s]
Processing PCDHGA5--PCDHGA8:  34%|███▍      | 26/77 [00:02<00:05,  9.36it/s]
Processing PCDHGA2--PCDHGC4:  34%|███▍      | 26/77 [00:02<00:05,  9.36it/s]
Processing PCDHGA2--PCDHGC4:  35%|███▌      | 27/77 [00:02<00:05,  9.36it/s]
Processing PCDHGA2--PCDHGC3:  35%|███▌      | 27/77 [00:02<00:05,  9.36it/s]
Processing PCDHGA2--PCDHGC3:  36%|███▋      | 28/77 [00:02<00:05,  9.36it/s]
Processing PCDHGA5--PCDHGB6:  36%|███▋      | 28/77 [00:03<00:05,  9.36it/s]
Processing PCDHGA5--PCDHGB6:  38%|███▊      | 29/77 [00:03<00:05,  9.36it/s]
Processing PCDHGA5--PCDHGC5:  38%|███▊      | 29/77 [00:03<00:05,  9.36it/s]
Processing PCDHGA5--PCDHGC5:  39%|███▉      | 30/77 [00:03<00:05,  9.36it/s]
Processing PCDHGA2--PCDHGA11:  39%|███▉      | 30/77 [00:03<00:05,  9.36it/s]
Processing PCDHGA2--PCDHGA11:  40%|████      | 31/77 [00:03<00:04,  9.37it/s]
Processing PCDHGA5--PCDHGC4:  40%|████      | 31/77 [00:03<00:04,  9.37it/s] 
Processing PCDHGA5--PCDHGC4:  42%|████▏     | 32/77 [00:03<00:04,  9.37it/s]
Processing PCDHGA2--PCDHGA9:  42%|████▏     | 32/77 [00:03<00:04,  9.37it/s]
Processing PCDHGA2--PCDHGA9:  43%|████▎     | 33/77 [00:03<00:04,  9.37it/s]
Processing PCDHGA2--PCDHGB7:  43%|████▎     | 33/77 [00:03<00:04,  9.37it/s]
Processing PCDHGA2--PCDHGB7:  44%|████▍     | 34/77 [00:03<00:04,  9.37it/s]
Processing PCDHGA5--PCDHGC3:  44%|████▍     | 34/77 [00:03<00:04,  9.37it/s]
Processing PCDHGA5--PCDHGC3:  45%|████▌     | 35/77 [00:03<00:04,  9.37it/s]
Processing PCDHGA5--PCDHGA11:  45%|████▌     | 35/77 [00:03<00:04,  9.37it/s]
Processing PCDHGA5--PCDHGA11:  47%|████▋     | 36/77 [00:03<00:04,  9.36it/s]
Processing PCDHGA2--PCDHGA12:  47%|████▋     | 36/77 [00:03<00:04,  9.36it/s]
Processing PCDHGA2--PCDHGA12:  48%|████▊     | 37/77 [00:03<00:04,  9.36it/s]
Processing PCDHGA2--PCDHGA10:  48%|████▊     | 37/77 [00:03<00:04,  9.36it/s]
Processing PCDHGA2--PCDHGA10:  49%|████▉     | 38/77 [00:04<00:04,  9.36it/s]
Processing PCDHGA5--PCDHGA9:  49%|████▉     | 38/77 [00:04<00:04,  9.36it/s] 
Processing PCDHGA5--PCDHGA9:  51%|█████     | 39/77 [00:04<00:04,  9.36it/s]
Processing PCDHGA5--PCDHGB7:  51%|█████     | 39/77 [00:04<00:04,  9.36it/s]
Processing PCDHGA5--PCDHGB7:  52%|█████▏    | 40/77 [00:04<00:03,  9.36it/s]
Processing PCDHGA5--PCDHGA12:  52%|█████▏    | 40/77 [00:04<00:03,  9.36it/s]
Processing PCDHGA5--PCDHGA12:  53%|█████▎    | 41/77 [00:04<00:03,  9.36it/s]
Processing PCDHGA5--PCDHGA10:  53%|█████▎    | 41/77 [00:04<00:03,  9.36it/s]
Processing PCDHGA5--PCDHGA10:  55%|█████▍    | 42/77 [00:04<00:03,  9.36it/s]
Processing PCDHGB3--PCDHGA8:  55%|█████▍    | 42/77 [00:04<00:03,  9.36it/s] 
Processing PCDHGB3--PCDHGA8:  56%|█████▌    | 43/77 [00:04<00:03,  9.37it/s]
Processing PCDHGB3--PCDHGB6:  56%|█████▌    | 43/77 [00:04<00:03,  9.37it/s]
Processing PCDHGB3--PCDHGB6:  57%|█████▋    | 44/77 [00:04<00:03,  9.36it/s]
Processing PCDHGB3--PCDHGC5:  57%|█████▋    | 44/77 [00:04<00:03,  9.36it/s]
Processing PCDHGB3--PCDHGC5:  58%|█████▊    | 45/77 [00:04<00:03,  9.36it/s]
Processing PCDHGB3--PCDHGC4:  58%|█████▊    | 45/77 [00:04<00:03,  9.36it/s]
Processing PCDHGB3--PCDHGC4:  60%|█████▉    | 46/77 [00:04<00:03,  9.36it/s]
Processing PCDHGB3--PCDHGC3:  60%|█████▉    | 46/77 [00:04<00:03,  9.36it/s]
Processing PCDHGB3--PCDHGC3:  61%|██████    | 47/77 [00:05<00:03,  9.36it/s]
Processing PCDHGB3--PCDHGA11:  61%|██████    | 47/77 [00:05<00:03,  9.36it/s]
Processing PCDHGB3--PCDHGA11:  62%|██████▏   | 48/77 [00:05<00:03,  9.36it/s]
Processing PCDHGB3--PCDHGA9:  62%|██████▏   | 48/77 [00:05<00:03,  9.36it/s] 
Processing PCDHGB3--PCDHGA9:  64%|██████▎   | 49/77 [00:05<00:02,  9.36it/s]
Processing PCDHGB3--PCDHGB7:  64%|██████▎   | 49/77 [00:05<00:02,  9.36it/s]
Processing PCDHGB3--PCDHGB7:  65%|██████▍   | 50/77 [00:05<00:02,  9.36it/s]
Processing PCDHGB3--PCDHGA12:  65%|██████▍   | 50/77 [00:05<00:02,  9.36it/s]
Processing PCDHGB3--PCDHGA12:  66%|██████▌   | 51/77 [00:05<00:02,  9.36it/s]
Processing PCDHGB3--PCDHGA10:  66%|██████▌   | 51/77 [00:05<00:02,  9.36it/s]
Processing PCDHGB3--PCDHGA10:  68%|██████▊   | 52/77 [00:05<00:02,  9.36it/s]
Processing PCDHA10--PCDHAC2:  68%|██████▊   | 52/77 [00:05<00:02,  9.36it/s] 
Processing PCDHA10--PCDHAC2:  69%|██████▉   | 53/77 [00:05<00:02,  9.36it/s]
Processing PCDHA10--PCDHAC1:  69%|██████▉   | 53/77 [00:05<00:02,  9.36it/s]
Processing PCDHA10--PCDHAC1:  70%|███████   | 54/77 [00:05<00:02,  9.36it/s]
Processing PCDHGA6--PCDHGA8:  70%|███████   | 54/77 [00:05<00:02,  9.36it/s]
Processing PCDHGA6--PCDHGA8:  71%|███████▏  | 55/77 [00:05<00:02,  9.36it/s]
Processing PCDHGA6--PCDHGB6:  71%|███████▏  | 55/77 [00:05<00:02,  9.36it/s]
Processing PCDHGA6--PCDHGB6:  73%|███████▎  | 56/77 [00:05<00:02,  9.36it/s]
Processing PCDHGA6--PCDHGC5:  73%|███████▎  | 56/77 [00:05<00:02,  9.36it/s]
Processing PCDHGA6--PCDHGC5:  74%|███████▍  | 57/77 [00:06<00:02,  9.36it/s]
Processing PCDHGA6--PCDHGC4:  74%|███████▍  | 57/77 [00:06<00:02,  9.36it/s]
Processing PCDHGA6--PCDHGC4:  75%|███████▌  | 58/77 [00:06<00:02,  9.36it/s]
Processing PCDHA10--PCDHA13:  75%|███████▌  | 58/77 [00:06<00:02,  9.36it/s]
Processing PCDHA10--PCDHA13:  77%|███████▋  | 59/77 [00:06<00:01,  9.36it/s]
Processing PCDHGA6--PCDHGC3:  77%|███████▋  | 59/77 [00:06<00:01,  9.36it/s]
Processing PCDHGA6--PCDHGC3:  78%|███████▊  | 60/77 [00:06<00:01,  9.36it/s]
Processing PCDHGA6--PCDHGA11:  78%|███████▊  | 60/77 [00:06<00:01,  9.36it/s]
Processing PCDHGA6--PCDHGA11:  79%|███████▉  | 61/77 [00:06<00:01,  9.36it/s]
Processing PCDHGA6--PCDHGA9:  79%|███████▉  | 61/77 [00:06<00:01,  9.36it/s] 
Processing PCDHGA6--PCDHGA9:  81%|████████  | 62/77 [00:06<00:01,  9.36it/s]
Processing PCDHGA6--PCDHGB7:  81%|████████  | 62/77 [00:06<00:01,  9.36it/s]
Processing PCDHGA6--PCDHGB7:  82%|████████▏ | 63/77 [00:06<00:01,  9.36it/s]
Processing PCDHGA6--PCDHGA12:  82%|████████▏ | 63/77 [00:06<00:01,  9.36it/s]
Processing PCDHGA6--PCDHGA12:  83%|████████▎ | 64/77 [00:06<00:01,  9.36it/s]
Processing PCDHGA6--PCDHGA10:  83%|████████▎ | 64/77 [00:06<00:01,  9.36it/s]
Processing PCDHGA6--PCDHGA10:  84%|████████▍ | 65/77 [00:06<00:01,  9.36it/s]
Processing AC092807.3--DDAH1:  84%|████████▍ | 65/77 [00:06<00:01,  9.36it/s]
Processing AC092807.3--DDAH1:  86%|████████▌ | 66/77 [00:07<00:01,  9.37it/s]
Processing AC015911.9--SLFN12L:  86%|████████▌ | 66/77 [00:07<00:01,  9.37it/s]
Processing AC015911.9--SLFN12L:  87%|████████▋ | 67/77 [00:07<00:01,  9.36it/s]
Processing EGF--LINC01723:  87%|████████▋ | 67/77 [00:07<00:01,  9.36it/s]     
Processing EGF--LINC01723:  88%|████████▊ | 68/77 [00:07<00:00,  9.36it/s]
Processing DNAJA3--PRSS27:  88%|████████▊ | 68/77 [00:07<00:00,  9.36it/s]
Processing DNAJA3--PRSS27:  90%|████████▉ | 69/77 [00:07<00:00,  9.36it/s]
Processing FGGY--LINC01725:  90%|████████▉ | 69/77 [00:07<00:00,  9.36it/s]
Processing FGGY--LINC01725:  91%|█████████ | 70/77 [00:07<00:00,  9.36it/s]
Processing TUBB4BP8--DUSP10:  91%|█████████ | 70/77 [00:07<00:00,  9.36it/s]
Processing TUBB4BP8--DUSP10:  92%|█████████▏| 71/77 [00:07<00:00,  9.36it/s]
Processing PAICSP7--DUSP10:  92%|█████████▏| 71/77 [00:07<00:00,  9.36it/s] 
Processing PAICSP7--DUSP10:  94%|█████████▎| 72/77 [00:07<00:00,  9.34it/s]
Processing PSMD11--ACLY:  94%|█████████▎| 72/77 [00:07<00:00,  9.34it/s]   
Processing PSMD11--ACLY:  95%|█████████▍| 73/77 [00:07<00:00,  9.35it/s]
Processing STON1--GTF2A1L:  95%|█████████▍| 73/77 [00:07<00:00,  9.35it/s]
Processing STON1--GTF2A1L:  96%|█████████▌| 74/77 [00:07<00:00,  9.35it/s]
Processing EFL1--GOLGA6L11P:  96%|█████████▌| 74/77 [00:07<00:00,  9.35it/s]
Processing EFL1--GOLGA6L11P:  97%|█████████▋| 75/77 [00:08<00:00,  9.36it/s]
Processing MKNK1--DMBX1:  97%|█████████▋| 75/77 [00:08<00:00,  9.36it/s]    
Processing MKNK1--DMBX1:  99%|█████████▊| 76/77 [00:08<00:00,  9.36it/s]
Processing EGF--SPTLC3:  99%|█████████▊| 76/77 [00:08<00:00,  9.36it/s] 
Processing EGF--SPTLC3: 100%|██████████| 77/77 [00:08<00:00,  9.36it/s]
Processing EGF--SPTLC3: 100%|██████████| 77/77 [00:08<00:00,  9.35it/s]
cat: fusion_report_db/DB-timestamp.txt: No such file or directory