File Info

Filename
.command.log
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/72/ea4d1f50bd2d4e3e8d033bb5d8d811/.command.log
Size
1.4 KB
Task
NFCORE_RNAFUSION:RNAFUSION:QC_WORKFLOW:BAM_RSEQC:RSEQC_JUNCTIONANNOTATION (aih-tih-sc-64fc89-R1_A23YTGFLT4_1)
Attempt

Content

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  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ac/71a164d80b163eac3f32fb8542be2a/aih-tih-sc-64fc89-R1_A23YTGFLT4_1.Aligned.sortedByCoord.out.bam
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/d0/db0390e137cf3062481f869034d2c8/ref_annot.bed
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/72/ea4d1f50bd2d4e3e8d033bb5d8d811/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/8f/7a9a4fac1f351bcf3095688b8dbd8d/aih-tih-sc-64fc89-R1_A23YTGFLT4_1.Aligned.sortedByCoord.out.bam.bai
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/72/ea4d1f50bd2d4e3e8d033bb5d8d811/.command.run
==> STAGING COMPLETE (5 inputs)

null device 
          1 
null device 
          1 
total = 318831258
[W::hts_idx_load3] The index file is older than the data file: aih-tih-sc-64fc89-R1_A23YTGFLT4_1.Aligned.sortedByCoord.out.bam.bai
Reading reference bed file:  ref_annot.bed  ...  Done
Load BAM file ...  Done

===================================================================
Total splicing  Events:	318831258
Known Splicing Events:	316188554
Partial Novel Splicing Events:	1691402
Novel Splicing Events:	844937
Filtered Splicing Events:	106365

Total splicing  Junctions:	600817
Known Splicing Junctions:	285134
Partial Novel Splicing Junctions:	174060
Novel Splicing Junctions:	141623

===================================================================
Create BED file ...
Create Interact file ...