File Info

Filename
fi_workdir/Log.final.out
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/45/f46b6dc9dc2c2b010ba01e6b1fae43/fi_workdir/Log.final.out
Size
2.0 KB
Attempt
                                 Started job on |	Jun 03 21:00:41
                             Started mapping on |	Jun 03 21:07:34
                                    Finished on |	Jun 03 21:58:52
       Mapping speed, Million of reads per hour |	256.84

                          Number of input reads |	219597035
                      Average input read length |	222
                                    UNIQUE READS:
                   Uniquely mapped reads number |	209552443
                        Uniquely mapped reads % |	95.43%
                          Average mapped length |	221.70
                       Number of splices: Total |	164365997
            Number of splices: Annotated (sjdb) |	161191487
                       Number of splices: GT/AG |	162039783
                       Number of splices: GC/AG |	1192916
                       Number of splices: AT/AC |	111847
               Number of splices: Non-canonical |	1021451
                      Mismatch rate per base, % |	0.47%
                         Deletion rate per base |	0.03%
                        Deletion average length |	2.17
                        Insertion rate per base |	0.00%
                       Insertion average length |	1.59
                             MULTI-MAPPING READS:
        Number of reads mapped to multiple loci |	7622647
             % of reads mapped to multiple loci |	3.47%
        Number of reads mapped to too many loci |	518960
             % of reads mapped to too many loci |	0.24%
                                  UNMAPPED READS:
  Number of reads unmapped: too many mismatches |	0
       % of reads unmapped: too many mismatches |	0.00%
            Number of reads unmapped: too short |	1568257
                 % of reads unmapped: too short |	0.71%
                Number of reads unmapped: other |	334728
                     % of reads unmapped: other |	0.15%
                                  CHIMERIC READS:
                       Number of chimeric reads |	0
                            % of chimeric reads |	0.00%