File Info

Filename
fi_workdir/Log.final.out
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/7d/8b6bc83c995e4e2b24400201febd38/fi_workdir/Log.final.out
Size
2.0 KB
Attempt
                                 Started job on |	Jun 03 20:28:31
                             Started mapping on |	Jun 03 20:35:39
                                    Finished on |	Jun 03 21:19:07
       Mapping speed, Million of reads per hour |	266.03

                          Number of input reads |	192722592
                      Average input read length |	230
                                    UNIQUE READS:
                   Uniquely mapped reads number |	175417706
                        Uniquely mapped reads % |	91.02%
                          Average mapped length |	230.74
                       Number of splices: Total |	136569625
            Number of splices: Annotated (sjdb) |	134086945
                       Number of splices: GT/AG |	134761348
                       Number of splices: GC/AG |	990884
                       Number of splices: AT/AC |	104109
               Number of splices: Non-canonical |	713284
                      Mismatch rate per base, % |	0.24%
                         Deletion rate per base |	0.02%
                        Deletion average length |	2.01
                        Insertion rate per base |	0.00%
                       Insertion average length |	1.85
                             MULTI-MAPPING READS:
        Number of reads mapped to multiple loci |	14622454
             % of reads mapped to multiple loci |	7.59%
        Number of reads mapped to too many loci |	729681
             % of reads mapped to too many loci |	0.38%
                                  UNMAPPED READS:
  Number of reads unmapped: too many mismatches |	0
       % of reads unmapped: too many mismatches |	0.00%
            Number of reads unmapped: too short |	1498767
                 % of reads unmapped: too short |	0.78%
                Number of reads unmapped: other |	453984
                     % of reads unmapped: other |	0.24%
                                  CHIMERIC READS:
                       Number of chimeric reads |	0
                            % of chimeric reads |	0.00%