Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/rna/GRCh38/ensembl/ctat_ref_annot.interval_list Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/f5/2ae5b378c12aadd2e2caa877425391/aih-tih-sc-3377ac-R1_A23YTGFLT4_1.Aligned.sortedByCoord.out.bam.bai Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/fc/b8d131ad21f865872847f038e61fb6/.command.sh Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/24/da9dd178c5c216644dfa0d72c2ff44/aih-tih-sc-3377ac-R1_A23YTGFLT4_1.Aligned.sortedByCoord.out.bam Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/fc/b8d131ad21f865872847f038e61fb6/.command.run Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/rna/GRCh38/ensembl/ref_annot.gtf.refflat ==> STAGING COMPLETE (6 inputs) /usr/local/bin/picard: line 5: warning: setlocale: LC_ALL: cannot change locale (en_US.UTF-8): No such file or directory Jun 03, 2026 8:17:54 PM com.intel.gkl.NativeLibraryLoader load INFO: Loading libgkl_compression.so from jar:file:/usr/local/share/picard-3.1.0-0/picard.jar!/com/intel/gkl/native/libgkl_compression.so [Wed Jun 03 20:17:54 GMT 2026] CollectRnaSeqMetrics --REF_FLAT ref_annot.gtf.refflat --RIBOSOMAL_INTERVALS ctat_ref_annot.interval_list --STRAND_SPECIFICITY NONE --INPUT aih-tih-sc-3377ac-R1_A23YTGFLT4_1.Aligned.sortedByCoord.out.bam --OUTPUT aih-tih-sc-3377ac-R1_A23YTGFLT4_1_rna_metrics.txt --TMP_DIR ./tmp --MINIMUM_LENGTH 500 --RRNA_FRAGMENT_PERCENTAGE 0.8 --METRIC_ACCUMULATION_LEVEL ALL_READS --END_BIAS_BASES 100 --ASSUME_SORTED true --STOP_AFTER 0 --VERBOSITY INFO --QUIET false --VALIDATION_STRINGENCY STRICT --COMPRESSION_LEVEL 5 --MAX_RECORDS_IN_RAM 500000 --CREATE_INDEX false --CREATE_MD5_FILE false --help false --version false --showHidden false --USE_JDK_DEFLATER false --USE_JDK_INFLATER false [Wed Jun 03 20:17:54 GMT 2026] Executing as ?@nf-fcb8d131ad21f865872847f038e61fb6-3346e-4pz5k on Linux 6.12.88 amd64; OpenJDK 64-Bit Server VM 20-internal-adhoc..src; Deflater: Intel; Inflater: Intel; Provider GCS is available; Picard version: Version:3.1.0 WARNING: BAM index file /tmp/nxf.XXXXZrSDby/aih-tih-sc-3377ac-R1_A23YTGFLT4_1.Aligned.sortedByCoord.out.bam.bai is older than BAM /tmp/nxf.XXXXZrSDby/aih-tih-sc-3377ac-R1_A23YTGFLT4_1.Aligned.sortedByCoord.out.bam INFO 2026-06-03 20:17:56 CollectRnaSeqMetrics Loaded 58279 genes. INFO 2026-06-03 20:18:06 SinglePassSamProgram Processed 1,000,000 records. Elapsed time: 00:00:09s. Time for last 1,000,000: 9s. Last read position: chr1:1,295,520 INFO 2026-06-03 20:18:18 SinglePassSamProgram Processed 2,000,000 records. Elapsed time: 00:00:21s. Time for last 1,000,000: 12s. Last read position: chr1:1,674,675 INFO 2026-06-03 20:18:27 SinglePassSamProgram Processed 3,000,000 records. Elapsed time: 00:00:31s. Time for last 1,000,000: 9s. Last read position: chr1:6,225,118 INFO 2026-06-03 20:18:36 SinglePassSamProgram Processed 4,000,000 records. Elapsed time: 00:00:40s. Time for last 1,000,000: 9s. Last read position: chr1:9,263,794 INFO 2026-06-03 20:18:45 SinglePassSamProgram Processed 5,000,000 records. Elapsed time: 00:00:49s. Time for last 1,000,000: 9s. Last read position: chr1:11,788,662 INFO 2026-06-03 20:18:57 SinglePassSamProgram Processed 6,000,000 records. Elapsed time: 00:01:01s. Time for last 1,000,000: 11s. Last read position: chr1:15,933,423 INFO 2026-06-03 20:19:03 SinglePassSamProgram Processed 7,000,000 records. Elapsed time: 00:01:06s. Time for last 1,000,000: 5s. Last read position: chr1:16,986,162 INFO 2026-06-03 20:19:15 SinglePassSamProgram Processed 8,000,000 records. Elapsed time: 00:01:19s. Time for last 1,000,000: 12s. Last read position: chr1:19,655,324 INFO 2026-06-03 20:19:25 SinglePassSamProgram Processed 9,000,000 records. Elapsed time: 00:01:29s. Time for last 1,000,000: 10s. Last read position: chr1:21,833,363 INFO 2026-06-03 20:19:38 SinglePassSamProgram Processed 10,000,000 records. Elapsed time: 00:01:41s. Time for last 1,000,000: 12s. Last read position: chr1:21,872,635 INFO 2026-06-03 20:19:51 SinglePassSamProgram Processed 11,000,000 records. Elapsed time: 00:01:55s. Time for last 1,000,000: 13s. Last read position: chr1:23,057,552 INFO 2026-06-03 20:19:58 SinglePassSamProgram Processed 12,000,000 records. Elapsed time: 00:02:02s. Time for last 1,000,000: 7s. Last read position: chr1:25,863,063 INFO 2026-06-03 20:20:07 SinglePassSamProgram Processed 13,000,000 records. Elapsed time: 00:02:10s. Time for last 1,000,000: 8s. Last read position: chr1:27,547,966 INFO 2026-06-03 20:20:17 SinglePassSamProgram Processed 14,000,000 records. Elapsed time: 00:02:20s. Time for last 1,000,000: 9s. Last read position: chr1:31,583,221 INFO 2026-06-03 20:20:37 SinglePassSamProgram Processed 15,000,000 records. Elapsed time: 00:02:41s. Time for last 1,000,000: 20s. Last read position: chr1:32,170,813 INFO 2026-06-03 20:20:47 SinglePassSamProgram Processed 16,000,000 records. Elapsed time: 00:02:51s. Time for last 1,000,000: 10s. Last read position: chr1:34,794,831 INFO 2026-06-03 20:20:53 SinglePassSamProgram Processed 17,000,000 records. Elapsed time: 00:02:57s. Time for last 1,000,000: 6s. Last read position: chr1:36,322,601 INFO 2026-06-03 20:21:41 SinglePassSamProgram Processed 18,000,000 records. Elapsed time: 00:03:45s. Time for last 1,000,000: 47s. Last read position: chr1:39,442,479 INFO 2026-06-03 20:22:08 SinglePassSamProgram Processed 19,000,000 records. Elapsed time: 00:04:12s. Time for last 1,000,000: 27s. Last read position: chr1:42,205,819 INFO 2026-06-03 20:22:25 SinglePassSamProgram Processed 20,000,000 records. Elapsed time: 00:04:29s. Time for last 1,000,000: 16s. Last read position: chr1:43,958,809 INFO 2026-06-03 20:22:35 SinglePassSamProgram Processed 21,000,000 records. Elapsed time: 00:04:38s. Time for last 1,000,000: 9s. Last read position: chr1:47,219,280 INFO 2026-06-03 20:22:46 SinglePassSamProgram Processed 22,000,000 records. Elapsed time: 00:04:49s. Time for last 1,000,000: 10s. Last read position: chr1:54,616,008 INFO 2026-06-03 20:23:01 SinglePassSamProgram Processed 23,000,000 records. Elapsed time: 00:05:05s. Time for last 1,000,000: 15s. Last read position: chr1:70,189,259 INFO 2026-06-03 20:23:11 SinglePassSamProgram Processed 24,000,000 records. Elapsed time: 00:05:15s. Time for last 1,000,000: 10s. Last read position: chr1:89,583,766 INFO 2026-06-03 20:23:19 SinglePassSamProgram Processed 25,000,000 records. Elapsed time: 00:05:22s. Time for last 1,000,000: 7s. Last read position: chr1:101,786,299 INFO 2026-06-03 20:23:34 SinglePassSamProgram Processed 26,000,000 records. Elapsed time: 00:05:38s. Time for last 1,000,000: 15s. Last read position: chr1:109,495,165 INFO 2026-06-03 20:23:44 SinglePassSamProgram Processed 27,000,000 records. Elapsed time: 00:05:48s. Time for last 1,000,000: 10s. Last read position: chr1:113,651,152 INFO 2026-06-03 20:23:53 SinglePassSamProgram Processed 28,000,000 records. Elapsed time: 00:05:57s. Time for last 1,000,000: 8s. Last read position: chr1:116,984,819 INFO 2026-06-03 20:23:59 SinglePassSamProgram Processed 29,000,000 records. Elapsed time: 00:06:03s. Time for last 1,000,000: 6s. Last read position: chr1:119,949,090 INFO 2026-06-03 20:24:06 SinglePassSamProgram Processed 30,000,000 records. Elapsed time: 00:06:10s. Time for last 1,000,000: 6s. Last read position: chr1:120,814,971 INFO 2026-06-03 20:24:11 SinglePassSamProgram Processed 31,000,000 records. Elapsed time: 00:06:14s. Time for last 1,000,000: 4s. Last read position: chr1:145,912,401 INFO 2026-06-03 20:24:17 SinglePassSamProgram Processed 32,000,000 records. Elapsed time: 00:06:20s. Time for last 1,000,000: 6s. Last read position: chr1:146,969,528 INFO 2026-06-03 20:24:23 SinglePassSamProgram Processed 33,000,000 records. Elapsed time: 00:06:26s. Time for last 1,000,000: 6s. Last read position: chr1:148,589,333 INFO 2026-06-03 20:24:31 SinglePassSamProgram Processed 34,000,000 records. Elapsed time: 00:06:34s. Time for last 1,000,000: 7s. Last read position: chr1:149,488,107 INFO 2026-06-03 20:24:33 SinglePassSamProgram Processed 35,000,000 records. Elapsed time: 00:06:36s. Time for last 1,000,000: 1s. Last read position: chr1:149,944,514 INFO 2026-06-03 20:24:41 SinglePassSamProgram Processed 36,000,000 records. Elapsed time: 00:06:44s. Time for last 1,000,000: 8s. Last read position: chr1:150,963,009 INFO 2026-06-03 20:24:49 SinglePassSamProgram Processed 37,000,000 records. Elapsed time: 00:06:53s. Time for last 1,000,000: 8s. Last read position: chr1:151,760,013 INFO 2026-06-03 20:24:56 SinglePassSamProgram Processed 38,000,000 records. Elapsed time: 00:07:00s. Time for last 1,000,000: 6s. Last read position: chr1:154,157,638 INFO 2026-06-03 20:25:14 SinglePassSamProgram Processed 39,000,000 records. Elapsed time: 00:07:17s. Time for last 1,000,000: 17s. Last read position: chr1:154,601,414 INFO 2026-06-03 20:25:28 SinglePassSamProgram Processed 40,000,000 records. Elapsed time: 00:07:32s. Time for last 1,000,000: 14s. Last read position: chr1:155,236,388 INFO 2026-06-03 20:25:46 SinglePassSamProgram Processed 41,000,000 records. Elapsed time: 00:07:50s. Time for last 1,000,000: 17s. Last read position: chr1:155,961,672 INFO 2026-06-03 20:26:07 SinglePassSamProgram Processed 42,000,000 records. Elapsed time: 00:08:11s. Time for last 1,000,000: 20s. Last read position: chr1:156,137,015 INFO 2026-06-03 20:26:24 SinglePassSamProgram Processed 43,000,000 records. Elapsed time: 00:08:27s. Time for last 1,000,000: 16s. Last read position: chr1:156,700,052 INFO 2026-06-03 20:26:30 SinglePassSamProgram Processed 44,000,000 records. Elapsed time: 00:08:34s. Time for last 1,000,000: 6s. Last read position: chr1:160,293,166 INFO 2026-06-03 20:26:47 SinglePassSamProgram Processed 45,000,000 records. Elapsed time: 00:08:51s. Time for last 1,000,000: 17s. Last read position: chr1:162,023,280 INFO 2026-06-03 20:26:54 SinglePassSamProgram Processed 46,000,000 records. Elapsed time: 00:08:57s. Time for last 1,000,000: 6s. Last read position: chr1:169,992,195 INFO 2026-06-03 20:27:04 SinglePassSamProgram Processed 47,000,000 records. Elapsed time: 00:09:07s. Time for last 1,000,000: 9s. Last read position: chr1:178,852,752 INFO 2026-06-03 20:27:10 SinglePassSamProgram Processed 48,000,000 records. Elapsed time: 00:09:13s. Time for last 1,000,000: 6s. Last read position: chr1:183,114,561 INFO 2026-06-03 20:27:17 SinglePassSamProgram Processed 49,000,000 records. Elapsed time: 00:09:21s. Time for last 1,000,000: 7s. Last read position: chr1:186,335,068 INFO 2026-06-03 20:27:26 SinglePassSamProgram Processed 50,000,000 records. Elapsed time: 00:09:30s. Time for last 1,000,000: 9s. Last read position: chr1:201,718,707 INFO 2026-06-03 20:27:38 SinglePassSamProgram Processed 51,000,000 records. Elapsed time: 00:09:41s. Time for last 1,000,000: 11s. Last read position: chr1:203,739,576 INFO 2026-06-03 20:27:47 SinglePassSamProgram Processed 52,000,000 records. Elapsed time: 00:09:51s. Time for last 1,000,000: 9s. Last read position: chr1:206,685,272 INFO 2026-06-03 20:27:53 SinglePassSamProgram Processed 53,000,000 records. Elapsed time: 00:09:57s. Time for last 1,000,000: 6s. Last read position: chr1:214,464,736 INFO 2026-06-03 20:28:00 SinglePassSamProgram Processed 54,000,000 records. Elapsed time: 00:10:04s. Time for last 1,000,000: 6s. Last read position: chr1:225,514,720 INFO 2026-06-03 20:28:16 SinglePassSamProgram Processed 55,000,000 records. Elapsed time: 00:10:19s. Time for last 1,000,000: 15s. Last read position: chr1:228,321,525 INFO 2026-06-03 20:28:28 SinglePassSamProgram Processed 56,000,000 records. Elapsed time: 00:10:31s. Time for last 1,000,000: 12s. Last read position: chr1:235,981,728 INFO 2026-06-03 20:28:42 SinglePassSamProgram Processed 57,000,000 records. Elapsed time: 00:10:46s. Time for last 1,000,000: 14s. Last read position: chr1:246,724,472 INFO 2026-06-03 20:28:51 SinglePassSamProgram Processed 58,000,000 records. Elapsed time: 00:10:54s. Time for last 1,000,000: 8s. Last read position: chr2:9,481,384 INFO 2026-06-03 20:29:00 SinglePassSamProgram Processed 59,000,000 records. Elapsed time: 00:11:04s. Time for last 1,000,000: 9s. Last read position: chr2:20,290,654 INFO 2026-06-03 20:29:09 SinglePassSamProgram Processed 60,000,000 records. Elapsed time: 00:11:13s. Time for last 1,000,000: 9s. Last read position: chr2:27,055,682 INFO 2026-06-03 20:29:17 SinglePassSamProgram Processed 61,000,000 records. Elapsed time: 00:11:21s. Time for last 1,000,000: 7s. Last read position: chr2:28,788,699 INFO 2026-06-03 20:29:23 SinglePassSamProgram Processed 62,000,000 records. Elapsed time: 00:11:27s. Time for last 1,000,000: 6s. Last read position: chr2:32,916,264 INFO 2026-06-03 20:29:29 SinglePassSamProgram Processed 63,000,000 records. Elapsed time: 00:11:33s. Time for last 1,000,000: 5s. Last read position: chr2:32,916,406 INFO 2026-06-03 20:29:31 SinglePassSamProgram Processed 64,000,000 records. Elapsed time: 00:11:35s. Time for last 1,000,000: 2s. Last read position: chr2:36,537,395 INFO 2026-06-03 20:29:41 SinglePassSamProgram Processed 65,000,000 records. Elapsed time: 00:11:45s. Time for last 1,000,000: 9s. Last read position: chr2:43,700,253 INFO 2026-06-03 20:29:50 SinglePassSamProgram Processed 66,000,000 records. Elapsed time: 00:11:54s. Time for last 1,000,000: 9s. Last read position: chr2:54,631,057 INFO 2026-06-03 20:30:13 SinglePassSamProgram Processed 67,000,000 records. Elapsed time: 00:12:17s. Time for last 1,000,000: 22s. Last read position: chr2:61,482,985 INFO 2026-06-03 20:30:26 SinglePassSamProgram Processed 68,000,000 records. Elapsed time: 00:12:30s. Time for last 1,000,000: 13s. Last read position: chr2:69,829,988 INFO 2026-06-03 20:30:49 SinglePassSamProgram Processed 69,000,000 records. Elapsed time: 00:12:52s. Time for last 1,000,000: 22s. Last read position: chr2:74,047,931 INFO 2026-06-03 20:30:59 SinglePassSamProgram Processed 70,000,000 records. Elapsed time: 00:13:02s. Time for last 1,000,000: 9s. Last read position: chr2:85,363,138 INFO 2026-06-03 20:31:05 SinglePassSamProgram Processed 71,000,000 records. Elapsed time: 00:13:08s. Time for last 1,000,000: 5s. Last read position: chr2:89,580,571 INFO 2026-06-03 20:31:14 SinglePassSamProgram Processed 72,000,000 records. Elapsed time: 00:13:17s. Time for last 1,000,000: 8s. Last read position: chr2:97,267,640 INFO 2026-06-03 20:31:27 SinglePassSamProgram Processed 73,000,000 records. Elapsed time: 00:13:31s. Time for last 1,000,000: 13s. Last read position: chr2:100,007,314 INFO 2026-06-03 20:31:38 SinglePassSamProgram Processed 74,000,000 records. Elapsed time: 00:13:41s. Time for last 1,000,000: 10s. Last read position: chr2:108,746,768 INFO 2026-06-03 20:31:41 SinglePassSamProgram Processed 75,000,000 records. Elapsed time: 00:13:45s. Time for last 1,000,000: 3s. Last read position: chr2:110,567,517 INFO 2026-06-03 20:31:48 SinglePassSamProgram Processed 76,000,000 records. Elapsed time: 00:13:51s. Time for last 1,000,000: 6s. Last read position: chr2:120,222,247 INFO 2026-06-03 20:31:58 SinglePassSamProgram Processed 77,000,000 records. Elapsed time: 00:14:02s. Time for last 1,000,000: 10s. Last read position: chr2:131,126,758 INFO 2026-06-03 20:32:01 SinglePassSamProgram Processed 78,000,000 records. Elapsed time: 00:14:04s. Time for last 1,000,000: 2s. Last read position: chr2:131,629,599 INFO 2026-06-03 20:32:12 SinglePassSamProgram Processed 79,000,000 records. Elapsed time: 00:14:15s. Time for last 1,000,000: 10s. Last read position: chr2:144,400,242 INFO 2026-06-03 20:32:23 SinglePassSamProgram Processed 80,000,000 records. Elapsed time: 00:14:26s. Time for last 1,000,000: 11s. Last read position: chr2:162,005,797 INFO 2026-06-03 20:32:36 SinglePassSamProgram Processed 81,000,000 records. Elapsed time: 00:14:40s. Time for last 1,000,000: 13s. Last read position: chr2:173,913,092 INFO 2026-06-03 20:33:05 SinglePassSamProgram Processed 82,000,000 records. Elapsed time: 00:15:09s. Time for last 1,000,000: 28s. Last read position: chr2:182,926,859 INFO 2026-06-03 20:33:10 SinglePassSamProgram Processed 83,000,000 records. Elapsed time: 00:15:14s. Time for last 1,000,000: 5s. Last read position: chr2:188,991,032 INFO 2026-06-03 20:33:17 SinglePassSamProgram Processed 84,000,000 records. Elapsed time: 00:15:21s. Time for last 1,000,000: 7s. Last read position: chr2:188,996,133 INFO 2026-06-03 20:33:29 SinglePassSamProgram Processed 85,000,000 records. Elapsed time: 00:15:32s. Time for last 1,000,000: 11s. Last read position: chr2:189,002,313 INFO 2026-06-03 20:33:44 SinglePassSamProgram Processed 86,000,000 records. Elapsed time: 00:15:47s. Time for last 1,000,000: 15s. Last read position: chr2:189,008,035 INFO 2026-06-03 20:33:58 SinglePassSamProgram Processed 87,000,000 records. Elapsed time: 00:16:01s. Time for last 1,000,000: 14s. Last read position: chr2:189,045,845 INFO 2026-06-03 20:34:10 SinglePassSamProgram Processed 88,000,000 records. Elapsed time: 00:16:13s. Time for last 1,000,000: 11s. Last read position: chr2:189,564,006 INFO 2026-06-03 20:34:23 SinglePassSamProgram Processed 89,000,000 records. Elapsed time: 00:16:27s. Time for last 1,000,000: 13s. Last read position: chr2:200,903,543 INFO 2026-06-03 20:34:40 SinglePassSamProgram Processed 90,000,000 records. Elapsed time: 00:16:43s. Time for last 1,000,000: 16s. Last read position: chr2:208,355,229 INFO 2026-06-03 20:34:50 SinglePassSamProgram Processed 91,000,000 records. Elapsed time: 00:16:53s. Time for last 1,000,000: 9s. Last read position: chr2:215,364,892 INFO 2026-06-03 20:35:05 SinglePassSamProgram Processed 92,000,000 records. Elapsed time: 00:17:09s. Time for last 1,000,000: 15s. Last read position: chr2:215,371,981 INFO 2026-06-03 20:35:29 SinglePassSamProgram Processed 93,000,000 records. Elapsed time: 00:17:32s. Time for last 1,000,000: 23s. Last read position: chr2:215,373,373 INFO 2026-06-03 20:35:53 SinglePassSamProgram Processed 94,000,000 records. Elapsed time: 00:17:56s. Time for last 1,000,000: 24s. Last read position: chr2:215,376,626 INFO 2026-06-03 20:36:24 SinglePassSamProgram Processed 95,000,000 records. Elapsed time: 00:18:28s. Time for last 1,000,000: 31s. Last read position: chr2:215,382,212 INFO 2026-06-03 20:36:58 SinglePassSamProgram Processed 96,000,000 records. Elapsed time: 00:19:01s. Time for last 1,000,000: 33s. Last read position: chr2:215,386,899 INFO 2026-06-03 20:37:38 SinglePassSamProgram Processed 97,000,000 records. Elapsed time: 00:19:42s. Time for last 1,000,000: 40s. Last read position: chr2:215,397,736 INFO 2026-06-03 20:38:23 SinglePassSamProgram Processed 98,000,000 records. Elapsed time: 00:20:27s. Time for last 1,000,000: 45s. Last read position: chr2:215,407,124 INFO 2026-06-03 20:39:21 SinglePassSamProgram Processed 99,000,000 records. Elapsed time: 00:21:25s. Time for last 1,000,000: 58s. Last read position: chr2:215,409,951 INFO 2026-06-03 20:40:22 SinglePassSamProgram Processed 100,000,000 records. Elapsed time: 00:22:26s. Time for last 1,000,000: 61s. Last read position: chr2:215,422,163 INFO 2026-06-03 20:41:38 SinglePassSamProgram Processed 101,000,000 records. Elapsed time: 00:23:42s. Time for last 1,000,000: 75s. Last read position: chr2:215,428,211 INFO 2026-06-03 20:43:02 SinglePassSamProgram Processed 102,000,000 records. Elapsed time: 00:25:06s. Time for last 1,000,000: 83s. Last read position: chr2:215,434,765 INFO 2026-06-03 20:43:40 SinglePassSamProgram Processed 103,000,000 records. Elapsed time: 00:25:44s. Time for last 1,000,000: 38s. Last read position: chr2:217,804,554 INFO 2026-06-03 20:43:55 SinglePassSamProgram Processed 104,000,000 records. Elapsed time: 00:25:59s. Time for last 1,000,000: 14s. Last read position: chr2:219,210,678 INFO 2026-06-03 20:44:05 SinglePassSamProgram Processed 105,000,000 records. Elapsed time: 00:26:08s. Time for last 1,000,000: 9s. Last read position: chr2:227,330,737 INFO 2026-06-03 20:44:22 SinglePassSamProgram Processed 106,000,000 records. Elapsed time: 00:26:25s. Time for last 1,000,000: 17s. Last read position: chr2:232,681,635 INFO 2026-06-03 20:44:33 SinglePassSamProgram Processed 107,000,000 records. Elapsed time: 00:26:36s. Time for last 1,000,000: 11s. Last read position: chr2:237,340,726 INFO 2026-06-03 20:44:46 SinglePassSamProgram Processed 108,000,000 records. Elapsed time: 00:26:50s. Time for last 1,000,000: 13s. Last read position: chr2:237,357,347 INFO 2026-06-03 20:45:15 SinglePassSamProgram Processed 109,000,000 records. Elapsed time: 00:27:19s. Time for last 1,000,000: 28s. Last read position: chr2:237,371,721 INFO 2026-06-03 20:45:50 SinglePassSamProgram Processed 110,000,000 records. Elapsed time: 00:27:54s. Time for last 1,000,000: 35s. Last read position: chr2:237,378,692 INFO 2026-06-03 20:46:22 SinglePassSamProgram Processed 111,000,000 records. Elapsed time: 00:28:26s. Time for last 1,000,000: 31s. Last read position: chr2:237,552,373 INFO 2026-06-03 20:46:36 SinglePassSamProgram Processed 112,000,000 records. Elapsed time: 00:28:39s. Time for last 1,000,000: 13s. Last read position: chr2:241,239,749 INFO 2026-06-03 20:47:06 SinglePassSamProgram Processed 113,000,000 records. Elapsed time: 00:29:10s. Time for last 1,000,000: 30s. Last read position: chr3:4,983,578 INFO 2026-06-03 20:47:20 SinglePassSamProgram Processed 114,000,000 records. Elapsed time: 00:29:23s. Time for last 1,000,000: 13s. Last read position: chr3:12,585,720 INFO 2026-06-03 20:47:27 SinglePassSamProgram Processed 115,000,000 records. Elapsed time: 00:29:31s. Time for last 1,000,000: 7s. Last read position: chr3:15,053,411 INFO 2026-06-03 20:47:37 SinglePassSamProgram Processed 116,000,000 records. Elapsed time: 00:29:40s. Time for last 1,000,000: 9s. Last read position: chr3:32,756,844 INFO 2026-06-03 20:47:48 SinglePassSamProgram Processed 117,000,000 records. Elapsed time: 00:29:52s. Time for last 1,000,000: 11s. Last read position: chr3:39,411,979 INFO 2026-06-03 20:48:09 SinglePassSamProgram Processed 118,000,000 records. Elapsed time: 00:30:12s. Time for last 1,000,000: 20s. Last read position: chr3:44,997,227 INFO 2026-06-03 20:48:19 SinglePassSamProgram Processed 119,000,000 records. Elapsed time: 00:30:23s. Time for last 1,000,000: 10s. Last read position: chr3:47,848,491 INFO 2026-06-03 20:48:33 SinglePassSamProgram Processed 120,000,000 records. Elapsed time: 00:30:36s. Time for last 1,000,000: 13s. Last read position: chr3:48,772,995 INFO 2026-06-03 20:48:46 SinglePassSamProgram Processed 121,000,000 records. Elapsed time: 00:30:50s. Time for last 1,000,000: 13s. Last read position: chr3:49,132,591 INFO 2026-06-03 20:48:57 SinglePassSamProgram Processed 122,000,000 records. Elapsed time: 00:31:00s. Time for last 1,000,000: 10s. Last read position: chr3:50,185,489 INFO 2026-06-03 20:49:05 SinglePassSamProgram Processed 123,000,000 records. Elapsed time: 00:31:08s. Time for last 1,000,000: 7s. Last read position: chr3:52,352,090 INFO 2026-06-03 20:49:18 SinglePassSamProgram Processed 124,000,000 records. Elapsed time: 00:31:21s. Time for last 1,000,000: 12s. Last read position: chr3:53,858,809 INFO 2026-06-03 20:49:30 SinglePassSamProgram Processed 125,000,000 records. Elapsed time: 00:31:34s. Time for last 1,000,000: 12s. Last read position: chr3:58,138,477 INFO 2026-06-03 20:49:51 SinglePassSamProgram Processed 126,000,000 records. Elapsed time: 00:31:54s. Time for last 1,000,000: 20s. Last read position: chr3:69,085,060 INFO 2026-06-03 20:50:02 SinglePassSamProgram Processed 127,000,000 records. Elapsed time: 00:32:06s. Time for last 1,000,000: 11s. Last read position: chr3:100,196,745 INFO 2026-06-03 20:50:16 SinglePassSamProgram Processed 128,000,000 records. Elapsed time: 00:32:19s. Time for last 1,000,000: 13s. Last read position: chr3:112,639,268 INFO 2026-06-03 20:50:23 SinglePassSamProgram Processed 129,000,000 records. Elapsed time: 00:32:27s. Time for last 1,000,000: 7s. Last read position: chr3:121,697,006 INFO 2026-06-03 20:50:31 SinglePassSamProgram Processed 130,000,000 records. Elapsed time: 00:32:35s. Time for last 1,000,000: 7s. Last read position: chr3:127,005,095 INFO 2026-06-03 20:50:39 SinglePassSamProgram Processed 131,000,000 records. Elapsed time: 00:32:42s. Time for last 1,000,000: 7s. Last read position: chr3:129,464,678 INFO 2026-06-03 20:50:51 SinglePassSamProgram Processed 132,000,000 records. Elapsed time: 00:32:54s. Time for last 1,000,000: 11s. Last read position: chr3:136,002,587 INFO 2026-06-03 20:51:02 SinglePassSamProgram Processed 133,000,000 records. Elapsed time: 00:33:05s. Time for last 1,000,000: 11s. Last read position: chr3:148,834,512 INFO 2026-06-03 20:51:08 SinglePassSamProgram Processed 134,000,000 records. Elapsed time: 00:33:12s. Time for last 1,000,000: 6s. Last read position: chr3:152,445,286 INFO 2026-06-03 20:51:17 SinglePassSamProgram Processed 135,000,000 records. Elapsed time: 00:33:20s. Time for last 1,000,000: 8s. Last read position: chr3:172,307,479 INFO 2026-06-03 20:51:29 SinglePassSamProgram Processed 136,000,000 records. Elapsed time: 00:33:32s. Time for last 1,000,000: 12s. Last read position: chr3:184,303,990 INFO 2026-06-03 20:51:49 SinglePassSamProgram Processed 137,000,000 records. Elapsed time: 00:33:53s. Time for last 1,000,000: 20s. Last read position: chr3:188,609,339 INFO 2026-06-03 20:52:01 SinglePassSamProgram Processed 138,000,000 records. Elapsed time: 00:34:04s. Time for last 1,000,000: 11s. Last read position: chr3:196,248,260 INFO 2026-06-03 20:52:17 SinglePassSamProgram Processed 139,000,000 records. Elapsed time: 00:34:21s. Time for last 1,000,000: 16s. Last read position: chr4:991,295 INFO 2026-06-03 20:52:26 SinglePassSamProgram Processed 140,000,000 records. Elapsed time: 00:34:29s. Time for last 1,000,000: 8s. Last read position: chr4:1,805,404 INFO 2026-06-03 20:52:40 SinglePassSamProgram Processed 141,000,000 records. Elapsed time: 00:34:44s. Time for last 1,000,000: 14s. Last read position: chr4:3,131,725 INFO 2026-06-03 20:52:54 SinglePassSamProgram Processed 142,000,000 records. Elapsed time: 00:34:57s. Time for last 1,000,000: 13s. Last read position: chr4:7,728,396 INFO 2026-06-03 20:53:01 SinglePassSamProgram Processed 143,000,000 records. Elapsed time: 00:35:05s. Time for last 1,000,000: 7s. Last read position: chr4:17,803,476 INFO 2026-06-03 20:53:09 SinglePassSamProgram Processed 144,000,000 records. Elapsed time: 00:35:13s. Time for last 1,000,000: 8s. Last read position: chr4:40,243,580 INFO 2026-06-03 20:53:22 SinglePassSamProgram Processed 145,000,000 records. Elapsed time: 00:35:26s. Time for last 1,000,000: 13s. Last read position: chr4:54,290,472 INFO 2026-06-03 20:53:29 SinglePassSamProgram Processed 146,000,000 records. Elapsed time: 00:35:33s. Time for last 1,000,000: 6s. Last read position: chr4:73,139,739 INFO 2026-06-03 20:53:42 SinglePassSamProgram Processed 147,000,000 records. Elapsed time: 00:35:45s. Time for last 1,000,000: 12s. Last read position: chr4:82,866,845 INFO 2026-06-03 20:54:09 SinglePassSamProgram Processed 148,000,000 records. Elapsed time: 00:36:13s. Time for last 1,000,000: 27s. Last read position: chr4:89,247,853 INFO 2026-06-03 20:54:19 SinglePassSamProgram Processed 149,000,000 records. Elapsed time: 00:36:23s. Time for last 1,000,000: 9s. Last read position: chr4:112,145,657 INFO 2026-06-03 20:54:59 SinglePassSamProgram Processed 150,000,000 records. Elapsed time: 00:37:03s. Time for last 1,000,000: 39s. Last read position: chr4:124,671,468 INFO 2026-06-03 20:55:04 SinglePassSamProgram Processed 151,000,000 records. Elapsed time: 00:37:07s. Time for last 1,000,000: 4s. Last read position: chr4:140,643,771 INFO 2026-06-03 20:55:13 SinglePassSamProgram Processed 152,000,000 records. Elapsed time: 00:37:16s. Time for last 1,000,000: 8s. Last read position: chr4:150,761,817 INFO 2026-06-03 20:55:28 SinglePassSamProgram Processed 153,000,000 records. Elapsed time: 00:37:32s. Time for last 1,000,000: 15s. Last read position: chr4:155,713,481 INFO 2026-06-03 20:55:38 SinglePassSamProgram Processed 154,000,000 records. Elapsed time: 00:37:42s. Time for last 1,000,000: 9s. Last read position: chr4:174,491,249 INFO 2026-06-03 20:55:47 SinglePassSamProgram Processed 155,000,000 records. Elapsed time: 00:37:50s. Time for last 1,000,000: 8s. Last read position: chr5:1,318,290 INFO 2026-06-03 20:55:57 SinglePassSamProgram Processed 156,000,000 records. Elapsed time: 00:38:01s. Time for last 1,000,000: 10s. Last read position: chr5:14,387,527 INFO 2026-06-03 20:56:20 SinglePassSamProgram Processed 157,000,000 records. Elapsed time: 00:38:23s. Time for last 1,000,000: 22s. Last read position: chr5:32,239,115 INFO 2026-06-03 20:56:30 SinglePassSamProgram Processed 158,000,000 records. Elapsed time: 00:38:34s. Time for last 1,000,000: 10s. Last read position: chr5:42,719,097 INFO 2026-06-03 20:56:40 SinglePassSamProgram Processed 159,000,000 records. Elapsed time: 00:38:43s. Time for last 1,000,000: 9s. Last read position: chr5:62,363,693 INFO 2026-06-03 20:56:50 SinglePassSamProgram Processed 160,000,000 records. Elapsed time: 00:38:53s. Time for last 1,000,000: 10s. Last read position: chr5:71,199,793 INFO 2026-06-03 20:56:59 SinglePassSamProgram Processed 161,000,000 records. Elapsed time: 00:39:02s. Time for last 1,000,000: 9s. Last read position: chr5:78,984,971 INFO 2026-06-03 20:57:06 SinglePassSamProgram Processed 162,000,000 records. Elapsed time: 00:39:10s. Time for last 1,000,000: 7s. Last read position: chr5:83,519,524 INFO 2026-06-03 20:57:19 SinglePassSamProgram Processed 163,000,000 records. Elapsed time: 00:39:22s. Time for last 1,000,000: 12s. Last read position: chr5:93,722,540 INFO 2026-06-03 20:57:38 SinglePassSamProgram Processed 164,000,000 records. Elapsed time: 00:39:42s. Time for last 1,000,000: 19s. Last read position: chr5:113,101,871 INFO 2026-06-03 20:57:50 SinglePassSamProgram Processed 165,000,000 records. Elapsed time: 00:39:54s. Time for last 1,000,000: 11s. Last read position: chr5:132,486,613 INFO 2026-06-03 20:57:58 SinglePassSamProgram Processed 166,000,000 records. Elapsed time: 00:40:01s. Time for last 1,000,000: 7s. Last read position: chr5:136,153,701 INFO 2026-06-03 20:58:12 SinglePassSamProgram Processed 167,000,000 records. Elapsed time: 00:40:15s. Time for last 1,000,000: 14s. Last read position: chr5:139,389,804 INFO 2026-06-03 20:58:19 SinglePassSamProgram Processed 168,000,000 records. Elapsed time: 00:40:22s. Time for last 1,000,000: 7s. Last read position: chr5:141,404,702 INFO 2026-06-03 20:58:29 SinglePassSamProgram Processed 169,000,000 records. Elapsed time: 00:40:33s. Time for last 1,000,000: 10s. Last read position: chr5:147,405,635 INFO 2026-06-03 20:58:36 SinglePassSamProgram Processed 170,000,000 records. Elapsed time: 00:40:39s. Time for last 1,000,000: 6s. Last read position: chr5:150,121,247 INFO 2026-06-03 20:58:43 SinglePassSamProgram Processed 171,000,000 records. Elapsed time: 00:40:47s. Time for last 1,000,000: 7s. Last read position: chr5:150,135,654 INFO 2026-06-03 20:58:51 SinglePassSamProgram Processed 172,000,000 records. Elapsed time: 00:40:55s. Time for last 1,000,000: 8s. Last read position: chr5:150,406,285 INFO 2026-06-03 20:58:59 SinglePassSamProgram Processed 173,000,000 records. Elapsed time: 00:41:03s. Time for last 1,000,000: 7s. Last read position: chr5:151,663,484 INFO 2026-06-03 20:59:08 SinglePassSamProgram Processed 174,000,000 records. Elapsed time: 00:41:12s. Time for last 1,000,000: 8s. Last read position: chr5:157,787,932 INFO 2026-06-03 20:59:21 SinglePassSamProgram Processed 175,000,000 records. Elapsed time: 00:41:25s. Time for last 1,000,000: 13s. Last read position: chr5:171,400,196 INFO 2026-06-03 20:59:28 SinglePassSamProgram Processed 176,000,000 records. Elapsed time: 00:41:32s. Time for last 1,000,000: 6s. Last read position: chr5:176,348,250 INFO 2026-06-03 20:59:36 SinglePassSamProgram Processed 177,000,000 records. Elapsed time: 00:41:40s. Time for last 1,000,000: 7s. Last read position: chr5:178,119,614 INFO 2026-06-03 20:59:57 SinglePassSamProgram Processed 178,000,000 records. Elapsed time: 00:42:01s. Time for last 1,000,000: 21s. Last read position: chr5:179,769,053 INFO 2026-06-03 21:00:06 SinglePassSamProgram Processed 179,000,000 records. Elapsed time: 00:42:09s. Time for last 1,000,000: 8s. Last read position: chr5:180,571,305 INFO 2026-06-03 21:00:14 SinglePassSamProgram Processed 180,000,000 records. Elapsed time: 00:42:18s. Time for last 1,000,000: 8s. Last read position: chr6:7,182,014 INFO 2026-06-03 21:00:22 SinglePassSamProgram Processed 181,000,000 records. Elapsed time: 00:42:26s. Time for last 1,000,000: 7s. Last read position: chr6:10,749,268 INFO 2026-06-03 21:00:29 SinglePassSamProgram Processed 182,000,000 records. Elapsed time: 00:42:32s. Time for last 1,000,000: 6s. Last read position: chr6:25,600,377 INFO 2026-06-03 21:00:31 SinglePassSamProgram Processed 183,000,000 records. Elapsed time: 00:42:35s. Time for last 1,000,000: 2s. Last read position: chr6:27,807,759 INFO 2026-06-03 21:00:35 SinglePassSamProgram Processed 184,000,000 records. Elapsed time: 00:42:39s. Time for last 1,000,000: 4s. Last read position: chr6:30,552,644 INFO 2026-06-03 21:00:45 SinglePassSamProgram Processed 185,000,000 records. Elapsed time: 00:42:49s. Time for last 1,000,000: 9s. Last read position: chr6:31,530,824 INFO 2026-06-03 21:00:57 SinglePassSamProgram Processed 186,000,000 records. Elapsed time: 00:43:01s. Time for last 1,000,000: 11s. Last read position: chr6:31,792,415 INFO 2026-06-03 21:00:58 SinglePassSamProgram Processed 187,000,000 records. Elapsed time: 00:43:02s. Time for last 1,000,000: 1s. Last read position: chr6:31,829,055 INFO 2026-06-03 21:01:06 SinglePassSamProgram Processed 188,000,000 records. Elapsed time: 00:43:09s. Time for last 1,000,000: 7s. Last read position: chr6:32,049,368 INFO 2026-06-03 21:01:28 SinglePassSamProgram Processed 189,000,000 records. Elapsed time: 00:43:32s. Time for last 1,000,000: 22s. Last read position: chr6:32,115,843 INFO 2026-06-03 21:01:35 SinglePassSamProgram Processed 190,000,000 records. Elapsed time: 00:43:39s. Time for last 1,000,000: 7s. Last read position: chr6:33,085,130 INFO 2026-06-03 21:01:43 SinglePassSamProgram Processed 191,000,000 records. Elapsed time: 00:43:46s. Time for last 1,000,000: 7s. Last read position: chr6:33,443,417 INFO 2026-06-03 21:01:49 SinglePassSamProgram Processed 192,000,000 records. Elapsed time: 00:43:53s. Time for last 1,000,000: 6s. Last read position: chr6:36,972,774 INFO 2026-06-03 21:01:57 SinglePassSamProgram Processed 193,000,000 records. Elapsed time: 00:44:00s. Time for last 1,000,000: 7s. Last read position: chr6:43,058,138 INFO 2026-06-03 21:02:07 SinglePassSamProgram Processed 194,000,000 records. Elapsed time: 00:44:10s. Time for last 1,000,000: 10s. Last read position: chr6:44,253,508 INFO 2026-06-03 21:02:31 SinglePassSamProgram Processed 195,000,000 records. Elapsed time: 00:44:34s. Time for last 1,000,000: 23s. Last read position: chr6:56,628,072 INFO 2026-06-03 21:02:51 SinglePassSamProgram Processed 196,000,000 records. Elapsed time: 00:44:54s. Time for last 1,000,000: 20s. Last read position: chr6:75,134,842 INFO 2026-06-03 21:03:24 SinglePassSamProgram Processed 197,000,000 records. Elapsed time: 00:45:27s. Time for last 1,000,000: 33s. Last read position: chr6:82,231,821 INFO 2026-06-03 21:03:34 SinglePassSamProgram Processed 198,000,000 records. Elapsed time: 00:45:38s. Time for last 1,000,000: 10s. Last read position: chr6:100,805,862 INFO 2026-06-03 21:03:45 SinglePassSamProgram Processed 199,000,000 records. Elapsed time: 00:45:48s. Time for last 1,000,000: 10s. Last read position: chr6:112,139,813 INFO 2026-06-03 21:03:53 SinglePassSamProgram Processed 200,000,000 records. Elapsed time: 00:45:57s. Time for last 1,000,000: 8s. Last read position: chr6:121,447,578 INFO 2026-06-03 21:04:05 SinglePassSamProgram Processed 201,000,000 records. Elapsed time: 00:46:08s. Time for last 1,000,000: 11s. Last read position: chr6:135,181,433 INFO 2026-06-03 21:04:34 SinglePassSamProgram Processed 202,000,000 records. Elapsed time: 00:46:38s. Time for last 1,000,000: 29s. Last read position: chr6:139,373,900 INFO 2026-06-03 21:04:41 SinglePassSamProgram Processed 203,000,000 records. Elapsed time: 00:46:45s. Time for last 1,000,000: 6s. Last read position: chr6:151,351,938 INFO 2026-06-03 21:04:47 SinglePassSamProgram Processed 204,000,000 records. Elapsed time: 00:46:51s. Time for last 1,000,000: 6s. Last read position: chr6:152,094,389 INFO 2026-06-03 21:05:10 SinglePassSamProgram Processed 205,000,000 records. Elapsed time: 00:47:14s. Time for last 1,000,000: 22s. Last read position: chr6:158,766,907 INFO 2026-06-03 21:05:15 SinglePassSamProgram Processed 206,000,000 records. Elapsed time: 00:47:18s. Time for last 1,000,000: 4s. Last read position: chr6:159,256,564 INFO 2026-06-03 21:05:30 SinglePassSamProgram Processed 207,000,000 records. Elapsed time: 00:47:33s. Time for last 1,000,000: 14s. Last read position: chr6:169,225,247 INFO 2026-06-03 21:05:46 SinglePassSamProgram Processed 208,000,000 records. Elapsed time: 00:47:50s. Time for last 1,000,000: 16s. Last read position: chr7:1,437,566 INFO 2026-06-03 21:05:54 SinglePassSamProgram Processed 209,000,000 records. Elapsed time: 00:47:57s. Time for last 1,000,000: 7s. Last read position: chr7:5,307,896 INFO 2026-06-03 21:06:01 SinglePassSamProgram Processed 210,000,000 records. Elapsed time: 00:48:05s. Time for last 1,000,000: 7s. Last read position: chr7:5,527,782 INFO 2026-06-03 21:06:09 SinglePassSamProgram Processed 211,000,000 records. Elapsed time: 00:48:13s. Time for last 1,000,000: 8s. Last read position: chr7:6,402,003 INFO 2026-06-03 21:06:16 SinglePassSamProgram Processed 212,000,000 records. Elapsed time: 00:48:20s. Time for last 1,000,000: 6s. Last read position: chr7:23,254,287 INFO 2026-06-03 21:06:36 SinglePassSamProgram Processed 213,000,000 records. Elapsed time: 00:48:39s. Time for last 1,000,000: 19s. Last read position: chr7:32,974,680 INFO 2026-06-03 21:06:43 SinglePassSamProgram Processed 214,000,000 records. Elapsed time: 00:48:46s. Time for last 1,000,000: 6s. Last read position: chr7:43,647,586 INFO 2026-06-03 21:06:49 SinglePassSamProgram Processed 215,000,000 records. Elapsed time: 00:48:52s. Time for last 1,000,000: 5s. Last read position: chr7:44,113,597 INFO 2026-06-03 21:06:58 SinglePassSamProgram Processed 216,000,000 records. Elapsed time: 00:49:02s. Time for last 1,000,000: 9s. Last read position: chr7:51,316,585 INFO 2026-06-03 21:07:05 SinglePassSamProgram Processed 217,000,000 records. Elapsed time: 00:49:09s. Time for last 1,000,000: 6s. Last read position: chr7:70,789,956 INFO 2026-06-03 21:07:09 SinglePassSamProgram Processed 218,000,000 records. Elapsed time: 00:49:13s. Time for last 1,000,000: 4s. Last read position: chr7:73,831,517 INFO 2026-06-03 21:07:44 SinglePassSamProgram Processed 219,000,000 records. Elapsed time: 00:49:47s. Time for last 1,000,000: 34s. Last read position: chr7:74,736,576 INFO 2026-06-03 21:07:48 SinglePassSamProgram Processed 220,000,000 records. Elapsed time: 00:49:52s. Time for last 1,000,000: 4s. Last read position: chr7:75,882,067 INFO 2026-06-03 21:07:55 SinglePassSamProgram Processed 221,000,000 records. Elapsed time: 00:49:58s. Time for last 1,000,000: 6s. Last read position: chr7:76,441,875 INFO 2026-06-03 21:08:02 SinglePassSamProgram Processed 222,000,000 records. Elapsed time: 00:50:06s. Time for last 1,000,000: 7s. Last read position: chr7:91,941,032 INFO 2026-06-03 21:08:39 SinglePassSamProgram Processed 223,000,000 records. Elapsed time: 00:50:43s. Time for last 1,000,000: 37s. Last read position: chr7:94,400,272 INFO 2026-06-03 21:08:47 SinglePassSamProgram Processed 224,000,000 records. Elapsed time: 00:50:51s. Time for last 1,000,000: 8s. Last read position: chr7:94,408,782 INFO 2026-06-03 21:08:58 SinglePassSamProgram Processed 225,000,000 records. Elapsed time: 00:51:02s. Time for last 1,000,000: 11s. Last read position: chr7:94,413,928 INFO 2026-06-03 21:09:15 SinglePassSamProgram Processed 226,000,000 records. Elapsed time: 00:51:19s. Time for last 1,000,000: 16s. Last read position: chr7:94,422,976 INFO 2026-06-03 21:09:37 SinglePassSamProgram Processed 227,000,000 records. Elapsed time: 00:51:40s. Time for last 1,000,000: 21s. Last read position: chr7:94,428,310 INFO 2026-06-03 21:09:57 SinglePassSamProgram Processed 228,000,000 records. Elapsed time: 00:52:00s. Time for last 1,000,000: 20s. Last read position: chr7:99,450,337 INFO 2026-06-03 21:10:05 SinglePassSamProgram Processed 229,000,000 records. Elapsed time: 00:52:09s. Time for last 1,000,000: 8s. Last read position: chr7:100,433,338 INFO 2026-06-03 21:10:11 SinglePassSamProgram Processed 230,000,000 records. Elapsed time: 00:52:15s. Time for last 1,000,000: 6s. Last read position: chr7:101,234,363 INFO 2026-06-03 21:10:18 SinglePassSamProgram Processed 231,000,000 records. Elapsed time: 00:52:22s. Time for last 1,000,000: 6s. Last read position: chr7:102,682,078 INFO 2026-06-03 21:10:46 SinglePassSamProgram Processed 232,000,000 records. Elapsed time: 00:52:50s. Time for last 1,000,000: 27s. Last read position: chr7:108,346,673 INFO 2026-06-03 21:10:56 SinglePassSamProgram Processed 233,000,000 records. Elapsed time: 00:53:00s. Time for last 1,000,000: 9s. Last read position: chr7:128,074,614 INFO 2026-06-03 21:11:04 SinglePassSamProgram Processed 234,000,000 records. Elapsed time: 00:53:07s. Time for last 1,000,000: 7s. Last read position: chr7:134,867,708 INFO 2026-06-03 21:11:11 SinglePassSamProgram Processed 235,000,000 records. Elapsed time: 00:53:15s. Time for last 1,000,000: 7s. Last read position: chr7:139,573,028 INFO 2026-06-03 21:11:20 SinglePassSamProgram Processed 236,000,000 records. Elapsed time: 00:53:24s. Time for last 1,000,000: 9s. Last read position: chr7:144,268,791 INFO 2026-06-03 21:11:26 SinglePassSamProgram Processed 237,000,000 records. Elapsed time: 00:53:30s. Time for last 1,000,000: 5s. Last read position: chr7:151,062,019 INFO 2026-06-03 21:11:46 SinglePassSamProgram Processed 238,000,000 records. Elapsed time: 00:53:50s. Time for last 1,000,000: 19s. Last read position: chr7:155,803,465 INFO 2026-06-03 21:12:01 SinglePassSamProgram Processed 239,000,000 records. Elapsed time: 00:54:04s. Time for last 1,000,000: 14s. Last read position: chr8:13,100,070 INFO 2026-06-03 21:12:15 SinglePassSamProgram Processed 240,000,000 records. Elapsed time: 00:54:18s. Time for last 1,000,000: 13s. Last read position: chr8:22,614,090 INFO 2026-06-03 21:12:22 SinglePassSamProgram Processed 241,000,000 records. Elapsed time: 00:54:26s. Time for last 1,000,000: 7s. Last read position: chr8:29,072,222 INFO 2026-06-03 21:12:28 SinglePassSamProgram Processed 242,000,000 records. Elapsed time: 00:54:31s. Time for last 1,000,000: 5s. Last read position: chr8:37,697,488 INFO 2026-06-03 21:12:30 SinglePassSamProgram Processed 243,000,000 records. Elapsed time: 00:54:34s. Time for last 1,000,000: 2s. Last read position: chr8:37,862,878 INFO 2026-06-03 21:12:41 SinglePassSamProgram Processed 244,000,000 records. Elapsed time: 00:54:44s. Time for last 1,000,000: 10s. Last read position: chr8:38,414,216 INFO 2026-06-03 21:13:19 SinglePassSamProgram Processed 245,000,000 records. Elapsed time: 00:55:22s. Time for last 1,000,000: 37s. Last read position: chr8:38,827,179 INFO 2026-06-03 21:13:35 SinglePassSamProgram Processed 246,000,000 records. Elapsed time: 00:55:39s. Time for last 1,000,000: 16s. Last read position: chr8:43,159,007 INFO 2026-06-03 21:13:49 SinglePassSamProgram Processed 247,000,000 records. Elapsed time: 00:55:52s. Time for last 1,000,000: 13s. Last read position: chr8:54,010,459 INFO 2026-06-03 21:13:57 SinglePassSamProgram Processed 248,000,000 records. Elapsed time: 00:56:00s. Time for last 1,000,000: 7s. Last read position: chr8:66,634,590 INFO 2026-06-03 21:14:13 SinglePassSamProgram Processed 249,000,000 records. Elapsed time: 00:56:17s. Time for last 1,000,000: 16s. Last read position: chr8:70,159,505 INFO 2026-06-03 21:14:21 SinglePassSamProgram Processed 250,000,000 records. Elapsed time: 00:56:24s. Time for last 1,000,000: 7s. Last read position: chr8:85,215,025 INFO 2026-06-03 21:14:30 SinglePassSamProgram Processed 251,000,000 records. Elapsed time: 00:56:33s. Time for last 1,000,000: 8s. Last read position: chr8:94,832,008 INFO 2026-06-03 21:14:39 SinglePassSamProgram Processed 252,000,000 records. Elapsed time: 00:56:43s. Time for last 1,000,000: 9s. Last read position: chr8:100,151,403 INFO 2026-06-03 21:15:03 SinglePassSamProgram Processed 253,000,000 records. Elapsed time: 00:57:07s. Time for last 1,000,000: 24s. Last read position: chr8:102,304,153 INFO 2026-06-03 21:15:19 SinglePassSamProgram Processed 254,000,000 records. Elapsed time: 00:57:22s. Time for last 1,000,000: 15s. Last read position: chr8:113,436,746 INFO 2026-06-03 21:15:24 SinglePassSamProgram Processed 255,000,000 records. Elapsed time: 00:57:28s. Time for last 1,000,000: 5s. Last read position: chr8:119,416,808 INFO 2026-06-03 21:15:37 SinglePassSamProgram Processed 256,000,000 records. Elapsed time: 00:57:40s. Time for last 1,000,000: 12s. Last read position: chr8:124,549,784 INFO 2026-06-03 21:15:49 SinglePassSamProgram Processed 257,000,000 records. Elapsed time: 00:57:53s. Time for last 1,000,000: 12s. Last read position: chr8:140,451,148 INFO 2026-06-03 21:16:03 SinglePassSamProgram Processed 258,000,000 records. Elapsed time: 00:58:07s. Time for last 1,000,000: 14s. Last read position: chr8:143,574,842 INFO 2026-06-03 21:16:16 SinglePassSamProgram Processed 259,000,000 records. Elapsed time: 00:58:19s. Time for last 1,000,000: 12s. Last read position: chr8:143,808,724 INFO 2026-06-03 21:16:21 SinglePassSamProgram Processed 260,000,000 records. Elapsed time: 00:58:24s. Time for last 1,000,000: 4s. Last read position: chr8:143,860,331 INFO 2026-06-03 21:16:22 SinglePassSamProgram Processed 261,000,000 records. Elapsed time: 00:58:25s. Time for last 1,000,000: 0s. Last read position: chr8:143,863,190 INFO 2026-06-03 21:16:23 SinglePassSamProgram Processed 262,000,000 records. Elapsed time: 00:58:26s. Time for last 1,000,000: 0s. Last read position: chr8:143,866,327 INFO 2026-06-03 21:16:27 SinglePassSamProgram Processed 263,000,000 records. Elapsed time: 00:58:30s. Time for last 1,000,000: 3s. Last read position: chr8:143,921,367 INFO 2026-06-03 21:16:46 SinglePassSamProgram Processed 264,000,000 records. Elapsed time: 00:58:50s. Time for last 1,000,000: 19s. Last read position: chr8:143,984,927 INFO 2026-06-03 21:16:56 SinglePassSamProgram Processed 265,000,000 records. Elapsed time: 00:59:00s. Time for last 1,000,000: 10s. Last read position: chr8:144,321,398 INFO 2026-06-03 21:17:06 SinglePassSamProgram Processed 266,000,000 records. Elapsed time: 00:59:09s. Time for last 1,000,000: 9s. Last read position: chr8:144,506,710 INFO 2026-06-03 21:17:12 SinglePassSamProgram Processed 267,000,000 records. Elapsed time: 00:59:16s. Time for last 1,000,000: 6s. Last read position: chr9:2,047,276 INFO 2026-06-03 21:17:30 SinglePassSamProgram Processed 268,000,000 records. Elapsed time: 00:59:33s. Time for last 1,000,000: 17s. Last read position: chr9:16,435,690 INFO 2026-06-03 21:17:36 SinglePassSamProgram Processed 269,000,000 records. Elapsed time: 00:59:40s. Time for last 1,000,000: 6s. Last read position: chr9:33,933,547 INFO 2026-06-03 21:17:46 SinglePassSamProgram Processed 270,000,000 records. Elapsed time: 00:59:50s. Time for last 1,000,000: 10s. Last read position: chr9:35,720,040 INFO 2026-06-03 21:17:54 SinglePassSamProgram Processed 271,000,000 records. Elapsed time: 00:59:57s. Time for last 1,000,000: 7s. Last read position: chr9:69,517,144 INFO 2026-06-03 21:18:02 SinglePassSamProgram Processed 272,000,000 records. Elapsed time: 01:00:06s. Time for last 1,000,000: 8s. Last read position: chr9:87,727,638 INFO 2026-06-03 21:18:13 SinglePassSamProgram Processed 273,000,000 records. Elapsed time: 01:00:16s. Time for last 1,000,000: 10s. Last read position: chr9:93,110,623 INFO 2026-06-03 21:18:20 SinglePassSamProgram Processed 274,000,000 records. Elapsed time: 01:00:24s. Time for last 1,000,000: 7s. Last read position: chr9:98,989,227 INFO 2026-06-03 21:18:33 SinglePassSamProgram Processed 275,000,000 records. Elapsed time: 01:00:37s. Time for last 1,000,000: 13s. Last read position: chr9:110,408,436 INFO 2026-06-03 21:18:43 SinglePassSamProgram Processed 276,000,000 records. Elapsed time: 01:00:47s. Time for last 1,000,000: 10s. Last read position: chr9:115,021,104 INFO 2026-06-03 21:19:03 SinglePassSamProgram Processed 277,000,000 records. Elapsed time: 01:01:07s. Time for last 1,000,000: 19s. Last read position: chr9:121,118,453 INFO 2026-06-03 21:19:17 SinglePassSamProgram Processed 278,000,000 records. Elapsed time: 01:01:21s. Time for last 1,000,000: 13s. Last read position: chr9:124,326,382 INFO 2026-06-03 21:19:29 SinglePassSamProgram Processed 279,000,000 records. Elapsed time: 01:01:32s. Time for last 1,000,000: 11s. Last read position: chr9:127,509,048 INFO 2026-06-03 21:19:44 SinglePassSamProgram Processed 280,000,000 records. Elapsed time: 01:01:48s. Time for last 1,000,000: 15s. Last read position: chr9:128,326,333 INFO 2026-06-03 21:20:16 SinglePassSamProgram Processed 281,000,000 records. Elapsed time: 01:02:20s. Time for last 1,000,000: 31s. Last read position: chr9:128,970,791 INFO 2026-06-03 21:20:32 SinglePassSamProgram Processed 282,000,000 records. Elapsed time: 01:02:35s. Time for last 1,000,000: 15s. Last read position: chr9:130,835,386 INFO 2026-06-03 21:20:44 SinglePassSamProgram Processed 283,000,000 records. Elapsed time: 01:02:48s. Time for last 1,000,000: 12s. Last read position: chr9:132,327,725 INFO 2026-06-03 21:20:56 SinglePassSamProgram Processed 284,000,000 records. Elapsed time: 01:03:00s. Time for last 1,000,000: 11s. Last read position: chr9:134,417,189 INFO 2026-06-03 21:21:10 SinglePassSamProgram Processed 285,000,000 records. Elapsed time: 01:03:14s. Time for last 1,000,000: 13s. Last read position: chr9:134,796,853 INFO 2026-06-03 21:21:33 SinglePassSamProgram Processed 286,000,000 records. Elapsed time: 01:03:37s. Time for last 1,000,000: 22s. Last read position: chr9:136,338,628 INFO 2026-06-03 21:21:59 SinglePassSamProgram Processed 287,000,000 records. Elapsed time: 01:04:03s. Time for last 1,000,000: 26s. Last read position: chr9:136,808,277 INFO 2026-06-03 21:22:17 SinglePassSamProgram Processed 288,000,000 records. Elapsed time: 01:04:20s. Time for last 1,000,000: 17s. Last read position: chr9:137,199,572 INFO 2026-06-03 21:22:35 SinglePassSamProgram Processed 289,000,000 records. Elapsed time: 01:04:39s. Time for last 1,000,000: 18s. Last read position: chr10:3,143,440 INFO 2026-06-03 21:22:49 SinglePassSamProgram Processed 290,000,000 records. Elapsed time: 01:04:52s. Time for last 1,000,000: 13s. Last read position: chr10:11,165,541 INFO 2026-06-03 21:23:02 SinglePassSamProgram Processed 291,000,000 records. Elapsed time: 01:05:06s. Time for last 1,000,000: 13s. Last read position: chr10:20,211,708 INFO 2026-06-03 21:23:29 SinglePassSamProgram Processed 292,000,000 records. Elapsed time: 01:05:33s. Time for last 1,000,000: 26s. Last read position: chr10:29,550,697 INFO 2026-06-03 21:23:42 SinglePassSamProgram Processed 293,000,000 records. Elapsed time: 01:05:45s. Time for last 1,000,000: 12s. Last read position: chr10:32,912,049 INFO 2026-06-03 21:24:10 SinglePassSamProgram Processed 294,000,000 records. Elapsed time: 01:06:14s. Time for last 1,000,000: 28s. Last read position: chr10:37,177,688 INFO 2026-06-03 21:24:42 SinglePassSamProgram Processed 295,000,000 records. Elapsed time: 01:06:46s. Time for last 1,000,000: 31s. Last read position: chr10:37,337,918 INFO 2026-06-03 21:24:52 SinglePassSamProgram Processed 296,000,000 records. Elapsed time: 01:06:56s. Time for last 1,000,000: 10s. Last read position: chr10:46,109,625 INFO 2026-06-03 21:25:02 SinglePassSamProgram Processed 297,000,000 records. Elapsed time: 01:07:06s. Time for last 1,000,000: 9s. Last read position: chr10:59,906,285 INFO 2026-06-03 21:25:23 SinglePassSamProgram Processed 298,000,000 records. Elapsed time: 01:07:26s. Time for last 1,000,000: 20s. Last read position: chr10:70,404,371 INFO 2026-06-03 21:25:37 SinglePassSamProgram Processed 299,000,000 records. Elapsed time: 01:07:40s. Time for last 1,000,000: 13s. Last read position: chr10:73,773,542 INFO 2026-06-03 21:26:18 SinglePassSamProgram Processed 300,000,000 records. Elapsed time: 01:08:22s. Time for last 1,000,000: 41s. Last read position: chr10:77,821,205 INFO 2026-06-03 21:26:32 SinglePassSamProgram Processed 301,000,000 records. Elapsed time: 01:08:35s. Time for last 1,000,000: 13s. Last read position: chr10:87,009,252 INFO 2026-06-03 21:26:48 SinglePassSamProgram Processed 302,000,000 records. Elapsed time: 01:08:52s. Time for last 1,000,000: 16s. Last read position: chr10:94,593,499 INFO 2026-06-03 21:27:06 SinglePassSamProgram Processed 303,000,000 records. Elapsed time: 01:09:09s. Time for last 1,000,000: 17s. Last read position: chr10:101,611,353 INFO 2026-06-03 21:27:33 SinglePassSamProgram Processed 304,000,000 records. Elapsed time: 01:09:37s. Time for last 1,000,000: 27s. Last read position: chr10:109,877,805 INFO 2026-06-03 21:27:46 SinglePassSamProgram Processed 305,000,000 records. Elapsed time: 01:09:50s. Time for last 1,000,000: 13s. Last read position: chr10:119,080,633 INFO 2026-06-03 21:28:10 SinglePassSamProgram Processed 306,000,000 records. Elapsed time: 01:10:14s. Time for last 1,000,000: 23s. Last read position: chr10:122,415,906 INFO 2026-06-03 21:28:20 SinglePassSamProgram Processed 307,000,000 records. Elapsed time: 01:10:23s. Time for last 1,000,000: 9s. Last read position: chr10:127,031,734 INFO 2026-06-03 21:28:34 SinglePassSamProgram Processed 308,000,000 records. Elapsed time: 01:10:37s. Time for last 1,000,000: 14s. Last read position: chr11:431,989 INFO 2026-06-03 21:28:49 SinglePassSamProgram Processed 309,000,000 records. Elapsed time: 01:10:52s. Time for last 1,000,000: 15s. Last read position: chr11:1,759,610 INFO 2026-06-03 21:29:06 SinglePassSamProgram Processed 310,000,000 records. Elapsed time: 01:11:10s. Time for last 1,000,000: 17s. Last read position: chr11:6,479,243 INFO 2026-06-03 21:29:29 SinglePassSamProgram Processed 311,000,000 records. Elapsed time: 01:11:33s. Time for last 1,000,000: 23s. Last read position: chr11:9,473,992 INFO 2026-06-03 21:29:51 SinglePassSamProgram Processed 312,000,000 records. Elapsed time: 01:11:55s. Time for last 1,000,000: 22s. Last read position: chr11:13,707,921 INFO 2026-06-03 21:30:06 SinglePassSamProgram Processed 313,000,000 records. Elapsed time: 01:12:09s. Time for last 1,000,000: 14s. Last read position: chr11:32,932,944 INFO 2026-06-03 21:30:25 SinglePassSamProgram Processed 314,000,000 records. Elapsed time: 01:12:28s. Time for last 1,000,000: 18s. Last read position: chr11:44,909,716 INFO 2026-06-03 21:30:38 SinglePassSamProgram Processed 315,000,000 records. Elapsed time: 01:12:41s. Time for last 1,000,000: 13s. Last read position: chr11:46,778,230 INFO 2026-06-03 21:30:57 SinglePassSamProgram Processed 316,000,000 records. Elapsed time: 01:13:01s. Time for last 1,000,000: 19s. Last read position: chr11:57,327,748 INFO 2026-06-03 21:31:24 SinglePassSamProgram Processed 317,000,000 records. Elapsed time: 01:13:28s. Time for last 1,000,000: 27s. Last read position: chr11:60,922,036 INFO 2026-06-03 21:31:47 SinglePassSamProgram Processed 318,000,000 records. Elapsed time: 01:13:51s. Time for last 1,000,000: 22s. Last read position: chr11:62,518,045 INFO 2026-06-03 21:31:54 SinglePassSamProgram Processed 319,000,000 records. Elapsed time: 01:13:57s. Time for last 1,000,000: 6s. Last read position: chr11:62,526,978 INFO 2026-06-03 21:32:01 SinglePassSamProgram Processed 320,000,000 records. Elapsed time: 01:14:04s. Time for last 1,000,000: 7s. Last read position: chr11:62,567,460 INFO 2026-06-03 21:32:20 SinglePassSamProgram Processed 321,000,000 records. Elapsed time: 01:14:24s. Time for last 1,000,000: 19s. Last read position: chr11:63,763,571 INFO 2026-06-03 21:32:36 SinglePassSamProgram Processed 322,000,000 records. Elapsed time: 01:14:39s. Time for last 1,000,000: 15s. Last read position: chr11:64,778,245 INFO 2026-06-03 21:32:51 SinglePassSamProgram Processed 323,000,000 records. Elapsed time: 01:14:55s. Time for last 1,000,000: 15s. Last read position: chr11:65,504,954 INFO 2026-06-03 21:33:15 SinglePassSamProgram Processed 324,000,000 records. Elapsed time: 01:15:19s. Time for last 1,000,000: 23s. Last read position: chr11:65,646,961 INFO 2026-06-03 21:33:34 SinglePassSamProgram Processed 325,000,000 records. Elapsed time: 01:15:37s. Time for last 1,000,000: 18s. Last read position: chr11:66,061,892 INFO 2026-06-03 21:33:52 SinglePassSamProgram Processed 326,000,000 records. Elapsed time: 01:15:56s. Time for last 1,000,000: 18s. Last read position: chr11:66,696,387 INFO 2026-06-03 21:34:13 SinglePassSamProgram Processed 327,000,000 records. Elapsed time: 01:16:17s. Time for last 1,000,000: 20s. Last read position: chr11:67,612,447 INFO 2026-06-03 21:34:32 SinglePassSamProgram Processed 328,000,000 records. Elapsed time: 01:16:36s. Time for last 1,000,000: 18s. Last read position: chr11:68,939,540 INFO 2026-06-03 21:34:40 SinglePassSamProgram Processed 329,000,000 records. Elapsed time: 01:16:44s. Time for last 1,000,000: 8s. Last read position: chr11:70,124,393 INFO 2026-06-03 21:35:12 SinglePassSamProgram Processed 330,000,000 records. Elapsed time: 01:17:16s. Time for last 1,000,000: 32s. Last read position: chr11:72,584,238 INFO 2026-06-03 21:35:40 SinglePassSamProgram Processed 331,000,000 records. Elapsed time: 01:17:44s. Time for last 1,000,000: 28s. Last read position: chr11:75,571,993 INFO 2026-06-03 21:36:03 SinglePassSamProgram Processed 332,000,000 records. Elapsed time: 01:18:07s. Time for last 1,000,000: 23s. Last read position: chr11:86,808,492 INFO 2026-06-03 21:36:22 SinglePassSamProgram Processed 333,000,000 records. Elapsed time: 01:18:26s. Time for last 1,000,000: 19s. Last read position: chr11:108,479,485 INFO 2026-06-03 21:36:41 SinglePassSamProgram Processed 334,000,000 records. Elapsed time: 01:18:45s. Time for last 1,000,000: 18s. Last read position: chr11:118,607,654 INFO 2026-06-03 21:37:02 SinglePassSamProgram Processed 335,000,000 records. Elapsed time: 01:19:06s. Time for last 1,000,000: 21s. Last read position: chr11:120,226,980 INFO 2026-06-03 21:37:23 SinglePassSamProgram Processed 336,000,000 records. Elapsed time: 01:19:27s. Time for last 1,000,000: 20s. Last read position: chr11:128,462,350 INFO 2026-06-03 21:37:36 SinglePassSamProgram Processed 337,000,000 records. Elapsed time: 01:19:39s. Time for last 1,000,000: 12s. Last read position: chr12:753,732 INFO 2026-06-03 21:38:11 SinglePassSamProgram Processed 338,000,000 records. Elapsed time: 01:20:15s. Time for last 1,000,000: 35s. Last read position: chr12:2,797,747 INFO 2026-06-03 21:38:19 SinglePassSamProgram Processed 339,000,000 records. Elapsed time: 01:20:22s. Time for last 1,000,000: 7s. Last read position: chr12:6,052,688 INFO 2026-06-03 21:38:34 SinglePassSamProgram Processed 340,000,000 records. Elapsed time: 01:20:37s. Time for last 1,000,000: 15s. Last read position: chr12:6,521,012 INFO 2026-06-03 21:39:19 SinglePassSamProgram Processed 341,000,000 records. Elapsed time: 01:21:22s. Time for last 1,000,000: 44s. Last read position: chr12:6,750,741 INFO 2026-06-03 21:39:24 SinglePassSamProgram Processed 342,000,000 records. Elapsed time: 01:21:28s. Time for last 1,000,000: 5s. Last read position: chr12:6,936,901 INFO 2026-06-03 21:39:33 SinglePassSamProgram Processed 343,000,000 records. Elapsed time: 01:21:36s. Time for last 1,000,000: 8s. Last read position: chr12:7,090,132 INFO 2026-06-03 21:39:40 SinglePassSamProgram Processed 344,000,000 records. Elapsed time: 01:21:44s. Time for last 1,000,000: 7s. Last read position: chr12:9,154,599 INFO 2026-06-03 21:39:46 SinglePassSamProgram Processed 345,000,000 records. Elapsed time: 01:21:49s. Time for last 1,000,000: 5s. Last read position: chr12:14,882,996 INFO 2026-06-03 21:39:55 SinglePassSamProgram Processed 346,000,000 records. Elapsed time: 01:21:59s. Time for last 1,000,000: 9s. Last read position: chr12:29,400,253 INFO 2026-06-03 21:40:08 SinglePassSamProgram Processed 347,000,000 records. Elapsed time: 01:22:12s. Time for last 1,000,000: 13s. Last read position: chr12:47,797,437 INFO 2026-06-03 21:40:18 SinglePassSamProgram Processed 348,000,000 records. Elapsed time: 01:22:22s. Time for last 1,000,000: 10s. Last read position: chr12:49,102,159 INFO 2026-06-03 21:40:27 SinglePassSamProgram Processed 349,000,000 records. Elapsed time: 01:22:30s. Time for last 1,000,000: 8s. Last read position: chr12:50,087,420 INFO 2026-06-03 21:40:36 SinglePassSamProgram Processed 350,000,000 records. Elapsed time: 01:22:40s. Time for last 1,000,000: 9s. Last read position: chr12:53,039,239 INFO 2026-06-03 21:40:51 SinglePassSamProgram Processed 351,000,000 records. Elapsed time: 01:22:55s. Time for last 1,000,000: 14s. Last read position: chr12:53,534,625 INFO 2026-06-03 21:41:03 SinglePassSamProgram Processed 352,000,000 records. Elapsed time: 01:23:07s. Time for last 1,000,000: 11s. Last read position: chr12:55,696,984 INFO 2026-06-03 21:41:14 SinglePassSamProgram Processed 353,000,000 records. Elapsed time: 01:23:17s. Time for last 1,000,000: 10s. Last read position: chr12:56,174,685 INFO 2026-06-03 21:41:27 SinglePassSamProgram Processed 354,000,000 records. Elapsed time: 01:23:31s. Time for last 1,000,000: 13s. Last read position: chr12:57,092,869 INFO 2026-06-03 21:41:41 SinglePassSamProgram Processed 355,000,000 records. Elapsed time: 01:23:45s. Time for last 1,000,000: 13s. Last read position: chr12:57,178,582 INFO 2026-06-03 21:41:57 SinglePassSamProgram Processed 356,000,000 records. Elapsed time: 01:24:01s. Time for last 1,000,000: 15s. Last read position: chr12:57,489,026 INFO 2026-06-03 21:42:09 SinglePassSamProgram Processed 357,000,000 records. Elapsed time: 01:24:13s. Time for last 1,000,000: 12s. Last read position: chr12:64,721,689 INFO 2026-06-03 21:42:21 SinglePassSamProgram Processed 358,000,000 records. Elapsed time: 01:24:24s. Time for last 1,000,000: 11s. Last read position: chr12:76,849,416 INFO 2026-06-03 21:42:30 SinglePassSamProgram Processed 359,000,000 records. Elapsed time: 01:24:33s. Time for last 1,000,000: 9s. Last read position: chr12:94,149,126 INFO 2026-06-03 21:42:43 SinglePassSamProgram Processed 360,000,000 records. Elapsed time: 01:24:47s. Time for last 1,000,000: 13s. Last read position: chr12:104,080,758 INFO 2026-06-03 21:42:52 SinglePassSamProgram Processed 361,000,000 records. Elapsed time: 01:24:56s. Time for last 1,000,000: 8s. Last read position: chr12:110,281,830 INFO 2026-06-03 21:43:07 SinglePassSamProgram Processed 362,000,000 records. Elapsed time: 01:25:11s. Time for last 1,000,000: 15s. Last read position: chr12:112,970,069 INFO 2026-06-03 21:43:19 SinglePassSamProgram Processed 363,000,000 records. Elapsed time: 01:25:23s. Time for last 1,000,000: 11s. Last read position: chr12:118,246,327 INFO 2026-06-03 21:43:30 SinglePassSamProgram Processed 364,000,000 records. Elapsed time: 01:25:34s. Time for last 1,000,000: 11s. Last read position: chr12:121,494,485 INFO 2026-06-03 21:43:40 SinglePassSamProgram Processed 365,000,000 records. Elapsed time: 01:25:43s. Time for last 1,000,000: 9s. Last read position: chr12:123,610,021 INFO 2026-06-03 21:43:59 SinglePassSamProgram Processed 366,000,000 records. Elapsed time: 01:26:03s. Time for last 1,000,000: 19s. Last read position: chr12:124,912,290 INFO 2026-06-03 21:44:07 SinglePassSamProgram Processed 367,000,000 records. Elapsed time: 01:26:11s. Time for last 1,000,000: 8s. Last read position: chr12:132,729,775 INFO 2026-06-03 21:44:16 SinglePassSamProgram Processed 368,000,000 records. Elapsed time: 01:26:20s. Time for last 1,000,000: 8s. Last read position: chr13:20,961,588 INFO 2026-06-03 21:44:23 SinglePassSamProgram Processed 369,000,000 records. Elapsed time: 01:26:27s. Time for last 1,000,000: 6s. Last read position: chr13:32,265,478 INFO 2026-06-03 21:44:34 SinglePassSamProgram Processed 370,000,000 records. Elapsed time: 01:26:37s. Time for last 1,000,000: 10s. Last read position: chr13:37,579,028 INFO 2026-06-03 21:44:48 SinglePassSamProgram Processed 371,000,000 records. Elapsed time: 01:26:51s. Time for last 1,000,000: 13s. Last read position: chr13:40,560,701 INFO 2026-06-03 21:44:55 SinglePassSamProgram Processed 372,000,000 records. Elapsed time: 01:26:58s. Time for last 1,000,000: 6s. Last read position: chr13:49,090,342 INFO 2026-06-03 21:45:05 SinglePassSamProgram Processed 373,000,000 records. Elapsed time: 01:27:08s. Time for last 1,000,000: 10s. Last read position: chr13:80,336,785 INFO 2026-06-03 21:45:21 SinglePassSamProgram Processed 374,000,000 records. Elapsed time: 01:27:25s. Time for last 1,000,000: 16s. Last read position: chr13:106,567,616 INFO 2026-06-03 21:45:34 SinglePassSamProgram Processed 375,000,000 records. Elapsed time: 01:27:38s. Time for last 1,000,000: 12s. Last read position: chr13:110,484,905 INFO 2026-06-03 21:45:46 SinglePassSamProgram Processed 376,000,000 records. Elapsed time: 01:27:50s. Time for last 1,000,000: 12s. Last read position: chr13:113,520,722 INFO 2026-06-03 21:45:59 SinglePassSamProgram Processed 377,000,000 records. Elapsed time: 01:28:02s. Time for last 1,000,000: 12s. Last read position: chr14:21,369,281 INFO 2026-06-03 21:46:09 SinglePassSamProgram Processed 378,000,000 records. Elapsed time: 01:28:13s. Time for last 1,000,000: 10s. Last read position: chr14:23,064,392 INFO 2026-06-03 21:46:19 SinglePassSamProgram Processed 379,000,000 records. Elapsed time: 01:28:23s. Time for last 1,000,000: 10s. Last read position: chr14:24,214,338 INFO 2026-06-03 21:46:38 SinglePassSamProgram Processed 380,000,000 records. Elapsed time: 01:28:41s. Time for last 1,000,000: 18s. Last read position: chr14:31,380,510 INFO 2026-06-03 21:46:46 SinglePassSamProgram Processed 381,000,000 records. Elapsed time: 01:28:49s. Time for last 1,000,000: 8s. Last read position: chr14:45,118,045 INFO 2026-06-03 21:46:53 SinglePassSamProgram Processed 382,000,000 records. Elapsed time: 01:28:57s. Time for last 1,000,000: 7s. Last read position: chr14:52,708,798 INFO 2026-06-03 21:47:05 SinglePassSamProgram Processed 383,000,000 records. Elapsed time: 01:29:09s. Time for last 1,000,000: 12s. Last read position: chr14:63,954,797 INFO 2026-06-03 21:47:41 SinglePassSamProgram Processed 384,000,000 records. Elapsed time: 01:29:45s. Time for last 1,000,000: 35s. Last read position: chr14:68,879,003 INFO 2026-06-03 21:47:52 SinglePassSamProgram Processed 385,000,000 records. Elapsed time: 01:29:56s. Time for last 1,000,000: 11s. Last read position: chr14:73,569,479 INFO 2026-06-03 21:48:03 SinglePassSamProgram Processed 386,000,000 records. Elapsed time: 01:30:06s. Time for last 1,000,000: 10s. Last read position: chr14:74,829,259 INFO 2026-06-03 21:48:11 SinglePassSamProgram Processed 387,000,000 records. Elapsed time: 01:30:14s. Time for last 1,000,000: 7s. Last read position: chr14:88,469,525 INFO 2026-06-03 21:48:20 SinglePassSamProgram Processed 388,000,000 records. Elapsed time: 01:30:24s. Time for last 1,000,000: 9s. Last read position: chr14:94,079,683 INFO 2026-06-03 21:48:32 SinglePassSamProgram Processed 389,000,000 records. Elapsed time: 01:30:35s. Time for last 1,000,000: 11s. Last read position: chr14:100,141,744 INFO 2026-06-03 21:50:05 SinglePassSamProgram Processed 390,000,000 records. Elapsed time: 01:32:09s. Time for last 1,000,000: 93s. Last read position: chr14:102,085,841 INFO 2026-06-03 21:50:27 SinglePassSamProgram Processed 391,000,000 records. Elapsed time: 01:32:31s. Time for last 1,000,000: 21s. Last read position: chr14:104,770,396 INFO 2026-06-03 21:50:35 SinglePassSamProgram Processed 392,000,000 records. Elapsed time: 01:32:38s. Time for last 1,000,000: 7s. Last read position: chr14:105,458,340 INFO 2026-06-03 21:51:07 SinglePassSamProgram Processed 393,000,000 records. Elapsed time: 01:33:10s. Time for last 1,000,000: 32s. Last read position: chr15:28,658,755 INFO 2026-06-03 21:51:14 SinglePassSamProgram Processed 394,000,000 records. Elapsed time: 01:33:18s. Time for last 1,000,000: 7s. Last read position: chr15:39,589,047 INFO 2026-06-03 21:51:22 SinglePassSamProgram Processed 395,000,000 records. Elapsed time: 01:33:25s. Time for last 1,000,000: 7s. Last read position: chr15:41,742,538 INFO 2026-06-03 21:51:33 SinglePassSamProgram Processed 396,000,000 records. Elapsed time: 01:33:36s. Time for last 1,000,000: 10s. Last read position: chr15:43,526,346 INFO 2026-06-03 21:51:41 SinglePassSamProgram Processed 397,000,000 records. Elapsed time: 01:33:45s. Time for last 1,000,000: 8s. Last read position: chr15:45,368,115 INFO 2026-06-03 21:51:54 SinglePassSamProgram Processed 398,000,000 records. Elapsed time: 01:33:58s. Time for last 1,000,000: 13s. Last read position: chr15:50,575,103 INFO 2026-06-03 21:52:07 SinglePassSamProgram Processed 399,000,000 records. Elapsed time: 01:34:11s. Time for last 1,000,000: 12s. Last read position: chr15:58,679,161 INFO 2026-06-03 21:52:25 SinglePassSamProgram Processed 400,000,000 records. Elapsed time: 01:34:28s. Time for last 1,000,000: 17s. Last read position: chr15:63,674,359 INFO 2026-06-03 21:52:30 SinglePassSamProgram Processed 401,000,000 records. Elapsed time: 01:34:34s. Time for last 1,000,000: 5s. Last read position: chr15:65,198,136 INFO 2026-06-03 21:52:36 SinglePassSamProgram Processed 402,000,000 records. Elapsed time: 01:34:40s. Time for last 1,000,000: 6s. Last read position: chr15:68,218,604 INFO 2026-06-03 21:52:46 SinglePassSamProgram Processed 403,000,000 records. Elapsed time: 01:34:50s. Time for last 1,000,000: 9s. Last read position: chr15:71,771,097 INFO 2026-06-03 21:52:57 SinglePassSamProgram Processed 404,000,000 records. Elapsed time: 01:35:01s. Time for last 1,000,000: 11s. Last read position: chr15:74,033,261 INFO 2026-06-03 21:53:08 SinglePassSamProgram Processed 405,000,000 records. Elapsed time: 01:35:11s. Time for last 1,000,000: 10s. Last read position: chr15:75,677,867 INFO 2026-06-03 21:53:19 SinglePassSamProgram Processed 406,000,000 records. Elapsed time: 01:35:23s. Time for last 1,000,000: 11s. Last read position: chr15:82,240,448 INFO 2026-06-03 21:53:27 SinglePassSamProgram Processed 407,000,000 records. Elapsed time: 01:35:31s. Time for last 1,000,000: 8s. Last read position: chr15:88,516,926 INFO 2026-06-03 21:53:38 SinglePassSamProgram Processed 408,000,000 records. Elapsed time: 01:35:42s. Time for last 1,000,000: 11s. Last read position: chr15:90,944,998 INFO 2026-06-03 21:53:48 SinglePassSamProgram Processed 409,000,000 records. Elapsed time: 01:35:52s. Time for last 1,000,000: 9s. Last read position: chr15:101,177,869 INFO 2026-06-03 21:53:56 SinglePassSamProgram Processed 410,000,000 records. Elapsed time: 01:36:00s. Time for last 1,000,000: 8s. Last read position: chr16:426,486 INFO 2026-06-03 21:54:10 SinglePassSamProgram Processed 411,000,000 records. Elapsed time: 01:36:14s. Time for last 1,000,000: 14s. Last read position: chr16:687,088 INFO 2026-06-03 21:54:21 SinglePassSamProgram Processed 412,000,000 records. Elapsed time: 01:36:25s. Time for last 1,000,000: 11s. Last read position: chr16:1,434,391 INFO 2026-06-03 21:54:30 SinglePassSamProgram Processed 413,000,000 records. Elapsed time: 01:36:34s. Time for last 1,000,000: 9s. Last read position: chr16:1,777,088 INFO 2026-06-03 21:55:08 SinglePassSamProgram Processed 414,000,000 records. Elapsed time: 01:37:11s. Time for last 1,000,000: 37s. Last read position: chr16:2,093,625 INFO 2026-06-03 21:55:26 SinglePassSamProgram Processed 415,000,000 records. Elapsed time: 01:37:29s. Time for last 1,000,000: 18s. Last read position: chr16:2,277,602 INFO 2026-06-03 21:55:35 SinglePassSamProgram Processed 416,000,000 records. Elapsed time: 01:37:39s. Time for last 1,000,000: 9s. Last read position: chr16:2,762,777 INFO 2026-06-03 21:55:49 SinglePassSamProgram Processed 417,000,000 records. Elapsed time: 01:37:52s. Time for last 1,000,000: 13s. Last read position: chr16:2,896,494 INFO 2026-06-03 21:55:58 SinglePassSamProgram Processed 418,000,000 records. Elapsed time: 01:38:01s. Time for last 1,000,000: 8s. Last read position: chr16:3,744,895 INFO 2026-06-03 21:56:10 SinglePassSamProgram Processed 419,000,000 records. Elapsed time: 01:38:13s. Time for last 1,000,000: 12s. Last read position: chr16:4,795,844 INFO 2026-06-03 21:56:20 SinglePassSamProgram Processed 420,000,000 records. Elapsed time: 01:38:23s. Time for last 1,000,000: 9s. Last read position: chr16:11,756,275 INFO 2026-06-03 21:56:28 SinglePassSamProgram Processed 421,000,000 records. Elapsed time: 01:38:32s. Time for last 1,000,000: 8s. Last read position: chr16:14,555,696 INFO 2026-06-03 21:56:34 SinglePassSamProgram Processed 422,000,000 records. Elapsed time: 01:38:37s. Time for last 1,000,000: 5s. Last read position: chr16:14,950,241 INFO 2026-06-03 21:56:49 SinglePassSamProgram Processed 423,000,000 records. Elapsed time: 01:38:52s. Time for last 1,000,000: 14s. Last read position: chr16:15,756,344 INFO 2026-06-03 21:56:55 SinglePassSamProgram Processed 424,000,000 records. Elapsed time: 01:38:58s. Time for last 1,000,000: 6s. Last read position: chr16:16,340,352 INFO 2026-06-03 21:56:57 SinglePassSamProgram Processed 425,000,000 records. Elapsed time: 01:39:00s. Time for last 1,000,000: 1s. Last read position: chr16:18,345,910 INFO 2026-06-03 21:56:59 SinglePassSamProgram Processed 426,000,000 records. Elapsed time: 01:39:03s. Time for last 1,000,000: 2s. Last read position: chr16:18,500,991 INFO 2026-06-03 21:57:09 SinglePassSamProgram Processed 427,000,000 records. Elapsed time: 01:39:13s. Time for last 1,000,000: 10s. Last read position: chr16:20,737,171 INFO 2026-06-03 21:57:12 SinglePassSamProgram Processed 428,000,000 records. Elapsed time: 01:39:16s. Time for last 1,000,000: 2s. Last read position: chr16:21,456,386 INFO 2026-06-03 21:57:16 SinglePassSamProgram Processed 429,000,000 records. Elapsed time: 01:39:19s. Time for last 1,000,000: 3s. Last read position: chr16:21,888,617 INFO 2026-06-03 21:57:20 SinglePassSamProgram Processed 430,000,000 records. Elapsed time: 01:39:24s. Time for last 1,000,000: 4s. Last read position: chr16:22,534,012 INFO 2026-06-03 21:57:27 SinglePassSamProgram Processed 431,000,000 records. Elapsed time: 01:39:31s. Time for last 1,000,000: 6s. Last read position: chr16:24,930,852 INFO 2026-06-03 21:57:34 SinglePassSamProgram Processed 432,000,000 records. Elapsed time: 01:39:38s. Time for last 1,000,000: 7s. Last read position: chr16:28,482,326 INFO 2026-06-03 21:57:48 SinglePassSamProgram Processed 433,000,000 records. Elapsed time: 01:39:52s. Time for last 1,000,000: 14s. Last read position: chr16:28,873,218 INFO 2026-06-03 21:57:52 SinglePassSamProgram Processed 434,000,000 records. Elapsed time: 01:39:55s. Time for last 1,000,000: 3s. Last read position: chr16:29,483,839 INFO 2026-06-03 21:57:55 SinglePassSamProgram Processed 435,000,000 records. Elapsed time: 01:39:59s. Time for last 1,000,000: 3s. Last read position: chr16:29,813,429 INFO 2026-06-03 21:58:06 SinglePassSamProgram Processed 436,000,000 records. Elapsed time: 01:40:09s. Time for last 1,000,000: 10s. Last read position: chr16:30,094,821 INFO 2026-06-03 21:58:08 SinglePassSamProgram Processed 437,000,000 records. Elapsed time: 01:40:12s. Time for last 1,000,000: 2s. Last read position: chr16:30,359,635 INFO 2026-06-03 21:58:14 SinglePassSamProgram Processed 438,000,000 records. Elapsed time: 01:40:18s. Time for last 1,000,000: 5s. Last read position: chr16:30,737,863 INFO 2026-06-03 21:58:20 SinglePassSamProgram Processed 439,000,000 records. Elapsed time: 01:40:24s. Time for last 1,000,000: 5s. Last read position: chr16:31,183,912 INFO 2026-06-03 21:58:29 SinglePassSamProgram Processed 440,000,000 records. Elapsed time: 01:40:33s. Time for last 1,000,000: 9s. Last read position: chr16:46,957,069 INFO 2026-06-03 21:58:37 SinglePassSamProgram Processed 441,000,000 records. Elapsed time: 01:40:41s. Time for last 1,000,000: 7s. Last read position: chr16:55,488,651 INFO 2026-06-03 21:58:49 SinglePassSamProgram Processed 442,000,000 records. Elapsed time: 01:40:52s. Time for last 1,000,000: 11s. Last read position: chr16:64,998,791 INFO 2026-06-03 21:58:59 SinglePassSamProgram Processed 443,000,000 records. Elapsed time: 01:41:02s. Time for last 1,000,000: 9s. Last read position: chr16:67,685,546 INFO 2026-06-03 21:59:09 SinglePassSamProgram Processed 444,000,000 records. Elapsed time: 01:41:13s. Time for last 1,000,000: 10s. Last read position: chr16:69,677,278 INFO 2026-06-03 21:59:20 SinglePassSamProgram Processed 445,000,000 records. Elapsed time: 01:41:24s. Time for last 1,000,000: 11s. Last read position: chr16:72,797,345 INFO 2026-06-03 21:59:29 SinglePassSamProgram Processed 446,000,000 records. Elapsed time: 01:41:32s. Time for last 1,000,000: 8s. Last read position: chr16:84,350,520 INFO 2026-06-03 21:59:34 SinglePassSamProgram Processed 447,000,000 records. Elapsed time: 01:41:38s. Time for last 1,000,000: 5s. Last read position: chr16:88,434,206 INFO 2026-06-03 21:59:47 SinglePassSamProgram Processed 448,000,000 records. Elapsed time: 01:41:50s. Time for last 1,000,000: 12s. Last read position: chr16:89,561,237 INFO 2026-06-03 22:00:00 SinglePassSamProgram Processed 449,000,000 records. Elapsed time: 01:42:04s. Time for last 1,000,000: 13s. Last read position: chr17:1,364,980 INFO 2026-06-03 22:00:11 SinglePassSamProgram Processed 450,000,000 records. Elapsed time: 01:42:15s. Time for last 1,000,000: 11s. Last read position: chr17:2,057,352 INFO 2026-06-03 22:00:21 SinglePassSamProgram Processed 451,000,000 records. Elapsed time: 01:42:24s. Time for last 1,000,000: 9s. Last read position: chr17:4,550,089 INFO 2026-06-03 22:00:30 SinglePassSamProgram Processed 452,000,000 records. Elapsed time: 01:42:34s. Time for last 1,000,000: 9s. Last read position: chr17:5,450,273 INFO 2026-06-03 22:00:41 SinglePassSamProgram Processed 453,000,000 records. Elapsed time: 01:42:45s. Time for last 1,000,000: 11s. Last read position: chr17:7,417,402 INFO 2026-06-03 22:00:50 SinglePassSamProgram Processed 454,000,000 records. Elapsed time: 01:42:54s. Time for last 1,000,000: 8s. Last read position: chr17:7,848,456 INFO 2026-06-03 22:01:03 SinglePassSamProgram Processed 455,000,000 records. Elapsed time: 01:43:06s. Time for last 1,000,000: 12s. Last read position: chr17:8,888,429 INFO 2026-06-03 22:01:15 SinglePassSamProgram Processed 456,000,000 records. Elapsed time: 01:43:19s. Time for last 1,000,000: 12s. Last read position: chr17:16,382,477 INFO 2026-06-03 22:01:25 SinglePassSamProgram Processed 457,000,000 records. Elapsed time: 01:43:29s. Time for last 1,000,000: 10s. Last read position: chr17:17,848,823 INFO 2026-06-03 22:01:36 SinglePassSamProgram Processed 458,000,000 records. Elapsed time: 01:43:39s. Time for last 1,000,000: 10s. Last read position: chr17:21,021,116 INFO 2026-06-03 22:01:46 SinglePassSamProgram Processed 459,000,000 records. Elapsed time: 01:43:49s. Time for last 1,000,000: 9s. Last read position: chr17:28,912,558 INFO 2026-06-03 22:02:00 SinglePassSamProgram Processed 460,000,000 records. Elapsed time: 01:44:03s. Time for last 1,000,000: 13s. Last read position: chr17:31,988,456 INFO 2026-06-03 22:02:09 SinglePassSamProgram Processed 461,000,000 records. Elapsed time: 01:44:13s. Time for last 1,000,000: 9s. Last read position: chr17:36,381,723 INFO 2026-06-03 22:02:16 SinglePassSamProgram Processed 462,000,000 records. Elapsed time: 01:44:20s. Time for last 1,000,000: 7s. Last read position: chr17:38,762,462 INFO 2026-06-03 22:02:28 SinglePassSamProgram Processed 463,000,000 records. Elapsed time: 01:44:31s. Time for last 1,000,000: 11s. Last read position: chr17:39,716,554 INFO 2026-06-03 22:02:42 SinglePassSamProgram Processed 464,000,000 records. Elapsed time: 01:44:46s. Time for last 1,000,000: 14s. Last read position: chr17:40,356,117 INFO 2026-06-03 22:02:48 SinglePassSamProgram Processed 465,000,000 records. Elapsed time: 01:44:52s. Time for last 1,000,000: 5s. Last read position: chr17:41,813,064 INFO 2026-06-03 22:03:05 SinglePassSamProgram Processed 466,000,000 records. Elapsed time: 01:45:09s. Time for last 1,000,000: 16s. Last read position: chr17:42,543,816 INFO 2026-06-03 22:03:13 SinglePassSamProgram Processed 467,000,000 records. Elapsed time: 01:45:16s. Time for last 1,000,000: 7s. Last read position: chr17:44,145,203 INFO 2026-06-03 22:03:23 SinglePassSamProgram Processed 468,000,000 records. Elapsed time: 01:45:27s. Time for last 1,000,000: 10s. Last read position: chr17:45,501,858 INFO 2026-06-03 22:03:33 SinglePassSamProgram Processed 469,000,000 records. Elapsed time: 01:45:36s. Time for last 1,000,000: 9s. Last read position: chr17:47,591,964 INFO 2026-06-03 22:03:43 SinglePassSamProgram Processed 470,000,000 records. Elapsed time: 01:45:47s. Time for last 1,000,000: 10s. Last read position: chr17:50,185,420 INFO 2026-06-03 22:03:47 SinglePassSamProgram Processed 471,000,000 records. Elapsed time: 01:45:51s. Time for last 1,000,000: 3s. Last read position: chr17:50,185,821 INFO 2026-06-03 22:03:52 SinglePassSamProgram Processed 472,000,000 records. Elapsed time: 01:45:55s. Time for last 1,000,000: 4s. Last read position: chr17:50,186,409 INFO 2026-06-03 22:03:56 SinglePassSamProgram Processed 473,000,000 records. Elapsed time: 01:46:00s. Time for last 1,000,000: 4s. Last read position: chr17:50,186,803 INFO 2026-06-03 22:04:01 SinglePassSamProgram Processed 474,000,000 records. Elapsed time: 01:46:05s. Time for last 1,000,000: 4s. Last read position: chr17:50,187,014 INFO 2026-06-03 22:04:06 SinglePassSamProgram Processed 475,000,000 records. Elapsed time: 01:46:10s. Time for last 1,000,000: 5s. Last read position: chr17:50,187,093 INFO 2026-06-03 22:04:11 SinglePassSamProgram Processed 476,000,000 records. Elapsed time: 01:46:15s. Time for last 1,000,000: 5s. Last read position: chr17:50,187,881 INFO 2026-06-03 22:04:17 SinglePassSamProgram Processed 477,000,000 records. Elapsed time: 01:46:20s. Time for last 1,000,000: 5s. Last read position: chr17:50,187,950 INFO 2026-06-03 22:04:23 SinglePassSamProgram Processed 478,000,000 records. Elapsed time: 01:46:26s. Time for last 1,000,000: 5s. Last read position: chr17:50,188,102 INFO 2026-06-03 22:04:28 SinglePassSamProgram Processed 479,000,000 records. Elapsed time: 01:46:32s. Time for last 1,000,000: 5s. Last read position: chr17:50,188,569 INFO 2026-06-03 22:04:34 SinglePassSamProgram Processed 480,000,000 records. Elapsed time: 01:46:38s. Time for last 1,000,000: 5s. Last read position: chr17:50,188,758 INFO 2026-06-03 22:04:40 SinglePassSamProgram Processed 481,000,000 records. Elapsed time: 01:46:43s. Time for last 1,000,000: 5s. Last read position: chr17:50,188,925 INFO 2026-06-03 22:04:45 SinglePassSamProgram Processed 482,000,000 records. Elapsed time: 01:46:49s. Time for last 1,000,000: 5s. Last read position: chr17:50,189,214 INFO 2026-06-03 22:04:51 SinglePassSamProgram Processed 483,000,000 records. Elapsed time: 01:46:55s. Time for last 1,000,000: 5s. Last read position: chr17:50,189,426 INFO 2026-06-03 22:04:57 SinglePassSamProgram Processed 484,000,000 records. Elapsed time: 01:47:01s. Time for last 1,000,000: 5s. Last read position: chr17:50,189,510 INFO 2026-06-03 22:05:04 SinglePassSamProgram Processed 485,000,000 records. Elapsed time: 01:47:07s. Time for last 1,000,000: 6s. Last read position: chr17:50,189,701 INFO 2026-06-03 22:05:10 SinglePassSamProgram Processed 486,000,000 records. Elapsed time: 01:47:14s. Time for last 1,000,000: 6s. Last read position: chr17:50,190,005 INFO 2026-06-03 22:05:16 SinglePassSamProgram Processed 487,000,000 records. Elapsed time: 01:47:20s. Time for last 1,000,000: 6s. Last read position: chr17:50,190,041 INFO 2026-06-03 22:05:23 SinglePassSamProgram Processed 488,000,000 records. Elapsed time: 01:47:27s. Time for last 1,000,000: 6s. Last read position: chr17:50,190,330 INFO 2026-06-03 22:05:30 SinglePassSamProgram Processed 489,000,000 records. Elapsed time: 01:47:34s. Time for last 1,000,000: 7s. Last read position: chr17:50,190,545 INFO 2026-06-03 22:05:37 SinglePassSamProgram Processed 490,000,000 records. Elapsed time: 01:47:40s. Time for last 1,000,000: 6s. Last read position: chr17:50,190,886 INFO 2026-06-03 22:05:44 SinglePassSamProgram Processed 491,000,000 records. Elapsed time: 01:47:47s. Time for last 1,000,000: 7s. Last read position: chr17:50,191,419 INFO 2026-06-03 22:05:51 SinglePassSamProgram Processed 492,000,000 records. Elapsed time: 01:47:55s. Time for last 1,000,000: 7s. Last read position: chr17:50,191,818 INFO 2026-06-03 22:05:59 SinglePassSamProgram Processed 493,000,000 records. Elapsed time: 01:48:03s. Time for last 1,000,000: 7s. Last read position: chr17:50,191,993 INFO 2026-06-03 22:06:07 SinglePassSamProgram Processed 494,000,000 records. Elapsed time: 01:48:10s. Time for last 1,000,000: 7s. Last read position: chr17:50,192,649 INFO 2026-06-03 22:06:15 SinglePassSamProgram Processed 495,000,000 records. Elapsed time: 01:48:19s. Time for last 1,000,000: 8s. Last read position: chr17:50,192,682 INFO 2026-06-03 22:06:23 SinglePassSamProgram Processed 496,000,000 records. Elapsed time: 01:48:27s. Time for last 1,000,000: 8s. Last read position: chr17:50,193,005 INFO 2026-06-03 22:06:33 SinglePassSamProgram Processed 497,000,000 records. Elapsed time: 01:48:36s. Time for last 1,000,000: 9s. Last read position: chr17:50,193,954 INFO 2026-06-03 22:06:41 SinglePassSamProgram Processed 498,000,000 records. Elapsed time: 01:48:45s. Time for last 1,000,000: 8s. Last read position: chr17:50,194,012 INFO 2026-06-03 22:06:51 SinglePassSamProgram Processed 499,000,000 records. Elapsed time: 01:48:54s. Time for last 1,000,000: 9s. Last read position: chr17:50,194,138 INFO 2026-06-03 22:07:00 SinglePassSamProgram Processed 500,000,000 records. Elapsed time: 01:49:04s. Time for last 1,000,000: 9s. Last read position: chr17:50,194,391 INFO 2026-06-03 22:07:10 SinglePassSamProgram Processed 501,000,000 records. Elapsed time: 01:49:14s. Time for last 1,000,000: 9s. Last read position: chr17:50,194,597 INFO 2026-06-03 22:07:19 SinglePassSamProgram Processed 502,000,000 records. Elapsed time: 01:49:23s. Time for last 1,000,000: 9s. Last read position: chr17:50,194,744 INFO 2026-06-03 22:07:29 SinglePassSamProgram Processed 503,000,000 records. Elapsed time: 01:49:33s. Time for last 1,000,000: 9s. Last read position: chr17:50,195,051 INFO 2026-06-03 22:07:39 SinglePassSamProgram Processed 504,000,000 records. Elapsed time: 01:49:43s. Time for last 1,000,000: 10s. Last read position: chr17:50,195,283 INFO 2026-06-03 22:07:50 SinglePassSamProgram Processed 505,000,000 records. Elapsed time: 01:49:54s. Time for last 1,000,000: 10s. Last read position: chr17:50,195,563 INFO 2026-06-03 22:08:00 SinglePassSamProgram Processed 506,000,000 records. Elapsed time: 01:50:04s. Time for last 1,000,000: 10s. Last read position: chr17:50,195,600 INFO 2026-06-03 22:08:12 SinglePassSamProgram Processed 507,000,000 records. Elapsed time: 01:50:16s. Time for last 1,000,000: 11s. Last read position: chr17:50,195,954 INFO 2026-06-03 22:08:24 SinglePassSamProgram Processed 508,000,000 records. Elapsed time: 01:50:27s. Time for last 1,000,000: 11s. Last read position: chr17:50,196,159 INFO 2026-06-03 22:08:37 SinglePassSamProgram Processed 509,000,000 records. Elapsed time: 01:50:40s. Time for last 1,000,000: 12s. Last read position: chr17:50,196,185 INFO 2026-06-03 22:08:49 SinglePassSamProgram Processed 510,000,000 records. Elapsed time: 01:50:52s. Time for last 1,000,000: 12s. Last read position: chr17:50,196,344 INFO 2026-06-03 22:09:01 SinglePassSamProgram Processed 511,000,000 records. Elapsed time: 01:51:05s. Time for last 1,000,000: 12s. Last read position: chr17:50,196,517 INFO 2026-06-03 22:09:13 SinglePassSamProgram Processed 512,000,000 records. Elapsed time: 01:51:17s. Time for last 1,000,000: 12s. Last read position: chr17:50,197,009 INFO 2026-06-03 22:09:26 SinglePassSamProgram Processed 513,000,000 records. Elapsed time: 01:51:30s. Time for last 1,000,000: 12s. Last read position: chr17:50,197,052 INFO 2026-06-03 22:09:40 SinglePassSamProgram Processed 514,000,000 records. Elapsed time: 01:51:43s. Time for last 1,000,000: 13s. Last read position: chr17:50,197,734 INFO 2026-06-03 22:09:53 SinglePassSamProgram Processed 515,000,000 records. Elapsed time: 01:51:57s. Time for last 1,000,000: 13s. Last read position: chr17:50,197,767 INFO 2026-06-03 22:10:06 SinglePassSamProgram Processed 516,000,000 records. Elapsed time: 01:52:09s. Time for last 1,000,000: 12s. Last read position: chr17:50,198,180 INFO 2026-06-03 22:10:19 SinglePassSamProgram Processed 517,000,000 records. Elapsed time: 01:52:23s. Time for last 1,000,000: 13s. Last read position: chr17:50,199,226 INFO 2026-06-03 22:10:32 SinglePassSamProgram Processed 518,000,000 records. Elapsed time: 01:52:36s. Time for last 1,000,000: 12s. Last read position: chr17:50,199,266 INFO 2026-06-03 22:10:45 SinglePassSamProgram Processed 519,000,000 records. Elapsed time: 01:52:49s. Time for last 1,000,000: 13s. Last read position: chr17:50,199,433 INFO 2026-06-03 22:10:59 SinglePassSamProgram Processed 520,000,000 records. Elapsed time: 01:53:03s. Time for last 1,000,000: 13s. Last read position: chr17:50,199,765 INFO 2026-06-03 22:11:16 SinglePassSamProgram Processed 521,000,000 records. Elapsed time: 01:53:20s. Time for last 1,000,000: 17s. Last read position: chr17:50,201,412 INFO 2026-06-03 22:11:30 SinglePassSamProgram Processed 522,000,000 records. Elapsed time: 01:53:34s. Time for last 1,000,000: 13s. Last read position: chr17:55,411,360 INFO 2026-06-03 22:11:39 SinglePassSamProgram Processed 523,000,000 records. Elapsed time: 01:53:43s. Time for last 1,000,000: 9s. Last read position: chr17:59,674,803 INFO 2026-06-03 22:11:52 SinglePassSamProgram Processed 524,000,000 records. Elapsed time: 01:53:55s. Time for last 1,000,000: 12s. Last read position: chr17:62,664,814 INFO 2026-06-03 22:12:02 SinglePassSamProgram Processed 525,000,000 records. Elapsed time: 01:54:06s. Time for last 1,000,000: 10s. Last read position: chr17:64,213,690 INFO 2026-06-03 22:12:14 SinglePassSamProgram Processed 526,000,000 records. Elapsed time: 01:54:18s. Time for last 1,000,000: 12s. Last read position: chr17:68,251,923 INFO 2026-06-03 22:12:25 SinglePassSamProgram Processed 527,000,000 records. Elapsed time: 01:54:29s. Time for last 1,000,000: 10s. Last read position: chr17:74,749,047 INFO 2026-06-03 22:12:39 SinglePassSamProgram Processed 528,000,000 records. Elapsed time: 01:54:42s. Time for last 1,000,000: 13s. Last read position: chr17:75,613,106 INFO 2026-06-03 22:12:55 SinglePassSamProgram Processed 529,000,000 records. Elapsed time: 01:54:59s. Time for last 1,000,000: 16s. Last read position: chr17:76,387,481 INFO 2026-06-03 22:13:05 SinglePassSamProgram Processed 530,000,000 records. Elapsed time: 01:55:09s. Time for last 1,000,000: 10s. Last read position: chr17:78,891,880 INFO 2026-06-03 22:13:15 SinglePassSamProgram Processed 531,000,000 records. Elapsed time: 01:55:18s. Time for last 1,000,000: 9s. Last read position: chr17:80,347,953 INFO 2026-06-03 22:13:28 SinglePassSamProgram Processed 532,000,000 records. Elapsed time: 01:55:31s. Time for last 1,000,000: 12s. Last read position: chr17:81,684,030 INFO 2026-06-03 22:13:53 SinglePassSamProgram Processed 533,000,000 records. Elapsed time: 01:55:57s. Time for last 1,000,000: 25s. Last read position: chr17:82,080,148 INFO 2026-06-03 22:14:04 SinglePassSamProgram Processed 534,000,000 records. Elapsed time: 01:56:08s. Time for last 1,000,000: 10s. Last read position: chr17:82,735,724 INFO 2026-06-03 22:14:15 SinglePassSamProgram Processed 535,000,000 records. Elapsed time: 01:56:19s. Time for last 1,000,000: 11s. Last read position: chr18:9,208,789 INFO 2026-06-03 22:14:27 SinglePassSamProgram Processed 536,000,000 records. Elapsed time: 01:56:31s. Time for last 1,000,000: 11s. Last read position: chr18:23,257,241 INFO 2026-06-03 22:14:39 SinglePassSamProgram Processed 537,000,000 records. Elapsed time: 01:56:43s. Time for last 1,000,000: 12s. Last read position: chr18:36,030,816 INFO 2026-06-03 22:14:48 SinglePassSamProgram Processed 538,000,000 records. Elapsed time: 01:56:52s. Time for last 1,000,000: 8s. Last read position: chr18:47,028,242 INFO 2026-06-03 22:15:10 SinglePassSamProgram Processed 539,000,000 records. Elapsed time: 01:57:13s. Time for last 1,000,000: 21s. Last read position: chr18:58,316,006 INFO 2026-06-03 22:15:21 SinglePassSamProgram Processed 540,000,000 records. Elapsed time: 01:57:25s. Time for last 1,000,000: 11s. Last read position: chr18:75,208,914 INFO 2026-06-03 22:15:29 SinglePassSamProgram Processed 541,000,000 records. Elapsed time: 01:57:33s. Time for last 1,000,000: 7s. Last read position: chr19:746,754 INFO 2026-06-03 22:15:39 SinglePassSamProgram Processed 542,000,000 records. Elapsed time: 01:57:43s. Time for last 1,000,000: 9s. Last read position: chr19:1,149,399 INFO 2026-06-03 22:15:49 SinglePassSamProgram Processed 543,000,000 records. Elapsed time: 01:57:53s. Time for last 1,000,000: 10s. Last read position: chr19:1,816,067 INFO 2026-06-03 22:15:56 SinglePassSamProgram Processed 544,000,000 records. Elapsed time: 01:58:00s. Time for last 1,000,000: 7s. Last read position: chr19:2,477,080 INFO 2026-06-03 22:16:04 SinglePassSamProgram Processed 545,000,000 records. Elapsed time: 01:58:07s. Time for last 1,000,000: 7s. Last read position: chr19:4,037,412 INFO 2026-06-03 22:16:10 SinglePassSamProgram Processed 546,000,000 records. Elapsed time: 01:58:13s. Time for last 1,000,000: 5s. Last read position: chr19:5,047,648 INFO 2026-06-03 22:16:21 SinglePassSamProgram Processed 547,000,000 records. Elapsed time: 01:58:24s. Time for last 1,000,000: 10s. Last read position: chr19:5,921,221 INFO 2026-06-03 22:16:30 SinglePassSamProgram Processed 548,000,000 records. Elapsed time: 01:58:33s. Time for last 1,000,000: 8s. Last read position: chr19:7,637,152 INFO 2026-06-03 22:16:37 SinglePassSamProgram Processed 549,000,000 records. Elapsed time: 01:58:41s. Time for last 1,000,000: 7s. Last read position: chr19:9,157,372 INFO 2026-06-03 22:16:44 SinglePassSamProgram Processed 550,000,000 records. Elapsed time: 01:58:47s. Time for last 1,000,000: 6s. Last read position: chr19:10,114,629 INFO 2026-06-03 22:17:02 SinglePassSamProgram Processed 551,000,000 records. Elapsed time: 01:59:05s. Time for last 1,000,000: 17s. Last read position: chr19:10,921,407 INFO 2026-06-03 22:17:30 SinglePassSamProgram Processed 552,000,000 records. Elapsed time: 01:59:34s. Time for last 1,000,000: 28s. Last read position: chr19:11,666,172 INFO 2026-06-03 22:17:38 SinglePassSamProgram Processed 553,000,000 records. Elapsed time: 01:59:42s. Time for last 1,000,000: 8s. Last read position: chr19:13,025,090 INFO 2026-06-03 22:17:46 SinglePassSamProgram Processed 554,000,000 records. Elapsed time: 01:59:50s. Time for last 1,000,000: 8s. Last read position: chr19:14,469,340 INFO 2026-06-03 22:17:54 SinglePassSamProgram Processed 555,000,000 records. Elapsed time: 01:59:57s. Time for last 1,000,000: 7s. Last read position: chr19:15,187,128 INFO 2026-06-03 22:18:05 SinglePassSamProgram Processed 556,000,000 records. Elapsed time: 02:00:08s. Time for last 1,000,000: 11s. Last read position: chr19:15,564,092 INFO 2026-06-03 22:18:15 SinglePassSamProgram Processed 557,000,000 records. Elapsed time: 02:00:19s. Time for last 1,000,000: 10s. Last read position: chr19:17,338,195 INFO 2026-06-03 22:18:21 SinglePassSamProgram Processed 558,000,000 records. Elapsed time: 02:00:25s. Time for last 1,000,000: 5s. Last read position: chr19:18,537,601 INFO 2026-06-03 22:18:29 SinglePassSamProgram Processed 559,000,000 records. Elapsed time: 02:00:32s. Time for last 1,000,000: 7s. Last read position: chr19:19,320,913 INFO 2026-06-03 22:18:34 SinglePassSamProgram Processed 560,000,000 records. Elapsed time: 02:00:38s. Time for last 1,000,000: 5s. Last read position: chr19:33,207,142 INFO 2026-06-03 22:18:44 SinglePassSamProgram Processed 561,000,000 records. Elapsed time: 02:00:48s. Time for last 1,000,000: 9s. Last read position: chr19:35,720,296 INFO 2026-06-03 22:18:54 SinglePassSamProgram Processed 562,000,000 records. Elapsed time: 02:00:58s. Time for last 1,000,000: 9s. Last read position: chr19:38,164,815 INFO 2026-06-03 22:19:02 SinglePassSamProgram Processed 563,000,000 records. Elapsed time: 02:01:06s. Time for last 1,000,000: 8s. Last read position: chr19:39,383,735 INFO 2026-06-03 22:19:14 SinglePassSamProgram Processed 564,000,000 records. Elapsed time: 02:01:18s. Time for last 1,000,000: 11s. Last read position: chr19:40,370,164 INFO 2026-06-03 22:19:27 SinglePassSamProgram Processed 565,000,000 records. Elapsed time: 02:01:31s. Time for last 1,000,000: 12s. Last read position: chr19:41,506,166 INFO 2026-06-03 22:19:36 SinglePassSamProgram Processed 566,000,000 records. Elapsed time: 02:01:39s. Time for last 1,000,000: 8s. Last read position: chr19:42,293,182 INFO 2026-06-03 22:19:43 SinglePassSamProgram Processed 567,000,000 records. Elapsed time: 02:01:46s. Time for last 1,000,000: 7s. Last read position: chr19:44,846,501 INFO 2026-06-03 22:19:50 SinglePassSamProgram Processed 568,000,000 records. Elapsed time: 02:01:53s. Time for last 1,000,000: 6s. Last read position: chr19:45,768,496 INFO 2026-06-03 22:19:57 SinglePassSamProgram Processed 569,000,000 records. Elapsed time: 02:02:01s. Time for last 1,000,000: 7s. Last read position: chr19:47,270,507 INFO 2026-06-03 22:20:05 SinglePassSamProgram Processed 570,000,000 records. Elapsed time: 02:02:09s. Time for last 1,000,000: 7s. Last read position: chr19:48,629,542 INFO 2026-06-03 22:20:14 SinglePassSamProgram Processed 571,000,000 records. Elapsed time: 02:02:17s. Time for last 1,000,000: 8s. Last read position: chr19:49,490,547 INFO 2026-06-03 22:20:20 SinglePassSamProgram Processed 572,000,000 records. Elapsed time: 02:02:23s. Time for last 1,000,000: 6s. Last read position: chr19:49,782,568 INFO 2026-06-03 22:20:32 SinglePassSamProgram Processed 573,000,000 records. Elapsed time: 02:02:35s. Time for last 1,000,000: 11s. Last read position: chr19:52,066,486 INFO 2026-06-03 22:20:38 SinglePassSamProgram Processed 574,000,000 records. Elapsed time: 02:02:42s. Time for last 1,000,000: 6s. Last read position: chr19:54,252,878 INFO 2026-06-03 22:20:45 SinglePassSamProgram Processed 575,000,000 records. Elapsed time: 02:02:48s. Time for last 1,000,000: 6s. Last read position: chr19:55,499,957 INFO 2026-06-03 22:20:49 SinglePassSamProgram Processed 576,000,000 records. Elapsed time: 02:02:53s. Time for last 1,000,000: 4s. Last read position: chr19:57,779,618 INFO 2026-06-03 22:20:54 SinglePassSamProgram Processed 577,000,000 records. Elapsed time: 02:02:58s. Time for last 1,000,000: 4s. Last read position: chr19:58,456,331 INFO 2026-06-03 22:21:03 SinglePassSamProgram Processed 578,000,000 records. Elapsed time: 02:03:07s. Time for last 1,000,000: 8s. Last read position: chr20:2,794,595 INFO 2026-06-03 22:21:08 SinglePassSamProgram Processed 579,000,000 records. Elapsed time: 02:03:12s. Time for last 1,000,000: 5s. Last read position: chr20:5,586,200 INFO 2026-06-03 22:21:19 SinglePassSamProgram Processed 580,000,000 records. Elapsed time: 02:03:22s. Time for last 1,000,000: 10s. Last read position: chr20:20,524,483 INFO 2026-06-03 22:21:25 SinglePassSamProgram Processed 581,000,000 records. Elapsed time: 02:03:29s. Time for last 1,000,000: 6s. Last read position: chr20:32,433,567 INFO 2026-06-03 22:21:35 SinglePassSamProgram Processed 582,000,000 records. Elapsed time: 02:03:39s. Time for last 1,000,000: 10s. Last read position: chr20:35,548,510 INFO 2026-06-03 22:21:49 SinglePassSamProgram Processed 583,000,000 records. Elapsed time: 02:03:52s. Time for last 1,000,000: 13s. Last read position: chr20:37,402,835 INFO 2026-06-03 22:21:57 SinglePassSamProgram Processed 584,000,000 records. Elapsed time: 02:04:01s. Time for last 1,000,000: 8s. Last read position: chr20:44,715,334 INFO 2026-06-03 22:22:09 SinglePassSamProgram Processed 585,000,000 records. Elapsed time: 02:04:13s. Time for last 1,000,000: 12s. Last read position: chr20:45,960,456 INFO 2026-06-03 22:22:19 SinglePassSamProgram Processed 586,000,000 records. Elapsed time: 02:04:23s. Time for last 1,000,000: 9s. Last read position: chr20:48,679,360 INFO 2026-06-03 22:22:26 SinglePassSamProgram Processed 587,000,000 records. Elapsed time: 02:04:30s. Time for last 1,000,000: 7s. Last read position: chr20:53,256,383 INFO 2026-06-03 22:22:45 SinglePassSamProgram Processed 588,000,000 records. Elapsed time: 02:04:49s. Time for last 1,000,000: 18s. Last read position: chr20:59,030,304 INFO 2026-06-03 22:22:54 SinglePassSamProgram Processed 589,000,000 records. Elapsed time: 02:04:57s. Time for last 1,000,000: 8s. Last read position: chr20:62,910,919 INFO 2026-06-03 22:23:01 SinglePassSamProgram Processed 590,000,000 records. Elapsed time: 02:05:04s. Time for last 1,000,000: 6s. Last read position: chr20:64,016,736 INFO 2026-06-03 22:23:03 SinglePassSamProgram Processed 591,000,000 records. Elapsed time: 02:05:07s. Time for last 1,000,000: 2s. Last read position: chr21:8,214,753 INFO 2026-06-03 22:23:04 SinglePassSamProgram Processed 592,000,000 records. Elapsed time: 02:05:07s. Time for last 1,000,000: 0s. Last read position: chr21:8,258,913 INFO 2026-06-03 22:23:05 SinglePassSamProgram Processed 593,000,000 records. Elapsed time: 02:05:08s. Time for last 1,000,000: 0s. Last read position: chr21:8,397,772 INFO 2026-06-03 22:23:06 SinglePassSamProgram Processed 594,000,000 records. Elapsed time: 02:05:09s. Time for last 1,000,000: 1s. Last read position: chr21:8,441,949 INFO 2026-06-03 22:23:07 SinglePassSamProgram Processed 595,000,000 records. Elapsed time: 02:05:10s. Time for last 1,000,000: 0s. Last read position: chr21:8,444,563 INFO 2026-06-03 22:23:14 SinglePassSamProgram Processed 596,000,000 records. Elapsed time: 02:05:17s. Time for last 1,000,000: 7s. Last read position: chr21:29,065,046 INFO 2026-06-03 22:23:23 SinglePassSamProgram Processed 597,000,000 records. Elapsed time: 02:05:26s. Time for last 1,000,000: 8s. Last read position: chr21:34,670,666 INFO 2026-06-03 22:23:43 SinglePassSamProgram Processed 598,000,000 records. Elapsed time: 02:05:47s. Time for last 1,000,000: 20s. Last read position: chr21:41,168,144 INFO 2026-06-03 22:23:51 SinglePassSamProgram Processed 599,000,000 records. Elapsed time: 02:05:55s. Time for last 1,000,000: 7s. Last read position: chr21:44,438,991 INFO 2026-06-03 22:24:04 SinglePassSamProgram Processed 600,000,000 records. Elapsed time: 02:06:08s. Time for last 1,000,000: 13s. Last read position: chr21:45,510,096 INFO 2026-06-03 22:24:10 SinglePassSamProgram Processed 601,000,000 records. Elapsed time: 02:06:14s. Time for last 1,000,000: 6s. Last read position: chr21:45,990,410 INFO 2026-06-03 22:24:17 SinglePassSamProgram Processed 602,000,000 records. Elapsed time: 02:06:21s. Time for last 1,000,000: 7s. Last read position: chr21:45,997,433 INFO 2026-06-03 22:24:28 SinglePassSamProgram Processed 603,000,000 records. Elapsed time: 02:06:32s. Time for last 1,000,000: 10s. Last read position: chr21:46,003,480 INFO 2026-06-03 22:24:36 SinglePassSamProgram Processed 604,000,000 records. Elapsed time: 02:06:40s. Time for last 1,000,000: 7s. Last read position: chr21:46,116,028 INFO 2026-06-03 22:24:48 SinglePassSamProgram Processed 605,000,000 records. Elapsed time: 02:06:51s. Time for last 1,000,000: 11s. Last read position: chr21:46,125,293 INFO 2026-06-03 22:25:02 SinglePassSamProgram Processed 606,000,000 records. Elapsed time: 02:07:06s. Time for last 1,000,000: 14s. Last read position: chr21:46,658,756 INFO 2026-06-03 22:25:11 SinglePassSamProgram Processed 607,000,000 records. Elapsed time: 02:07:14s. Time for last 1,000,000: 8s. Last read position: chr22:20,149,218 INFO 2026-06-03 22:25:26 SinglePassSamProgram Processed 608,000,000 records. Elapsed time: 02:07:30s. Time for last 1,000,000: 15s. Last read position: chr22:21,958,540 INFO 2026-06-03 22:25:33 SinglePassSamProgram Processed 609,000,000 records. Elapsed time: 02:07:36s. Time for last 1,000,000: 6s. Last read position: chr22:23,825,347 INFO 2026-06-03 22:25:41 SinglePassSamProgram Processed 610,000,000 records. Elapsed time: 02:07:44s. Time for last 1,000,000: 7s. Last read position: chr22:28,795,540 INFO 2026-06-03 22:25:54 SinglePassSamProgram Processed 611,000,000 records. Elapsed time: 02:07:57s. Time for last 1,000,000: 13s. Last read position: chr22:29,555,908 INFO 2026-06-03 22:26:07 SinglePassSamProgram Processed 612,000,000 records. Elapsed time: 02:08:11s. Time for last 1,000,000: 13s. Last read position: chr22:33,274,538 INFO 2026-06-03 22:26:15 SinglePassSamProgram Processed 613,000,000 records. Elapsed time: 02:08:18s. Time for last 1,000,000: 7s. Last read position: chr22:37,126,841 INFO 2026-06-03 22:26:23 SinglePassSamProgram Processed 614,000,000 records. Elapsed time: 02:08:26s. Time for last 1,000,000: 7s. Last read position: chr22:38,736,333 INFO 2026-06-03 22:26:29 SinglePassSamProgram Processed 615,000,000 records. Elapsed time: 02:08:33s. Time for last 1,000,000: 6s. Last read position: chr22:41,178,161 INFO 2026-06-03 22:26:37 SinglePassSamProgram Processed 616,000,000 records. Elapsed time: 02:08:40s. Time for last 1,000,000: 7s. Last read position: chr22:42,887,918 INFO 2026-06-03 22:26:45 SinglePassSamProgram Processed 617,000,000 records. Elapsed time: 02:08:48s. Time for last 1,000,000: 8s. Last read position: chr22:46,268,005 INFO 2026-06-03 22:26:56 SinglePassSamProgram Processed 618,000,000 records. Elapsed time: 02:09:00s. Time for last 1,000,000: 11s. Last read position: chr22:46,464,184 INFO 2026-06-03 22:27:10 SinglePassSamProgram Processed 619,000,000 records. Elapsed time: 02:09:14s. Time for last 1,000,000: 13s. Last read position: chr22:49,913,497 INFO 2026-06-03 22:27:22 SinglePassSamProgram Processed 620,000,000 records. Elapsed time: 02:09:26s. Time for last 1,000,000: 11s. Last read position: chr22:50,456,502 INFO 2026-06-03 22:27:31 SinglePassSamProgram Processed 621,000,000 records. Elapsed time: 02:09:34s. Time for last 1,000,000: 8s. Last read position: chrX:1,389,480 INFO 2026-06-03 22:27:32 SinglePassSamProgram Processed 622,000,000 records. Elapsed time: 02:09:36s. Time for last 1,000,000: 1s. Last read position: chrX:3,320,305 INFO 2026-06-03 22:27:34 SinglePassSamProgram Processed 623,000,000 records. Elapsed time: 02:09:38s. Time for last 1,000,000: 2s. Last read position: chrX:10,128,586 INFO 2026-06-03 22:27:41 SinglePassSamProgram Processed 624,000,000 records. Elapsed time: 02:09:44s. Time for last 1,000,000: 6s. Last read position: chrX:24,210,778 INFO 2026-06-03 22:28:06 SinglePassSamProgram Processed 625,000,000 records. Elapsed time: 02:10:09s. Time for last 1,000,000: 24s. Last read position: chrX:46,472,748 INFO 2026-06-03 22:28:16 SinglePassSamProgram Processed 626,000,000 records. Elapsed time: 02:10:19s. Time for last 1,000,000: 10s. Last read position: chrX:49,034,134 INFO 2026-06-03 22:28:27 SinglePassSamProgram Processed 627,000,000 records. Elapsed time: 02:10:30s. Time for last 1,000,000: 11s. Last read position: chrX:53,589,775 INFO 2026-06-03 22:28:40 SinglePassSamProgram Processed 628,000,000 records. Elapsed time: 02:10:44s. Time for last 1,000,000: 13s. Last read position: chrX:67,545,182 INFO 2026-06-03 22:28:52 SinglePassSamProgram Processed 629,000,000 records. Elapsed time: 02:10:55s. Time for last 1,000,000: 11s. Last read position: chrX:72,273,273 INFO 2026-06-03 22:29:03 SinglePassSamProgram Processed 630,000,000 records. Elapsed time: 02:11:07s. Time for last 1,000,000: 11s. Last read position: chrX:101,109,573 INFO 2026-06-03 22:29:10 SinglePassSamProgram Processed 631,000,000 records. Elapsed time: 02:11:14s. Time for last 1,000,000: 6s. Last read position: chrX:119,618,646 INFO 2026-06-03 22:29:21 SinglePassSamProgram Processed 632,000,000 records. Elapsed time: 02:11:24s. Time for last 1,000,000: 10s. Last read position: chrX:136,878,989 INFO 2026-06-03 22:29:28 SinglePassSamProgram Processed 633,000,000 records. Elapsed time: 02:11:32s. Time for last 1,000,000: 7s. Last read position: chrX:153,950,333 INFO 2026-06-03 22:29:55 SinglePassSamProgram Processed 634,000,000 records. Elapsed time: 02:11:58s. Time for last 1,000,000: 26s. Last read position: chrX:154,399,346 INFO 2026-06-03 22:30:00 SinglePassSamProgram Processed 635,000,000 records. Elapsed time: 02:12:04s. Time for last 1,000,000: 5s. Last read position: GL000220.1:107,740 INFO 2026-06-03 22:30:01 SinglePassSamProgram Processed 636,000,000 records. Elapsed time: 02:12:05s. Time for last 1,000,000: 0s. Last read position: GL000220.1:115,559 INFO 2026-06-03 22:30:02 SinglePassSamProgram Processed 637,000,000 records. Elapsed time: 02:12:05s. Time for last 1,000,000: 0s. Last read position: GL000220.1:158,140 INFO 2026-06-03 22:30:02 SinglePassSamProgram Processed 638,000,000 records. Elapsed time: 02:12:06s. Time for last 1,000,000: 0s. Last read position: KI270714.1:29,883 INFO 2026-06-03 22:30:03 SinglePassSamProgram Processed 639,000,000 records. Elapsed time: 02:12:07s. Time for last 1,000,000: 0s. Last read position: KI270733.1:132,405 INFO 2026-06-03 22:30:04 SinglePassSamProgram Processed 640,000,000 records. Elapsed time: 02:12:08s. Time for last 1,000,000: 0s. Last read position: KI270733.1:176,099 INFO 2026-06-03 22:30:05 SinglePassSamProgram Processed 641,000,000 records. Elapsed time: 02:12:08s. Time for last 1,000,000: 0s. Last read position: */* INFO 2026-06-03 22:30:05 SinglePassSamProgram Processed 642,000,000 records. Elapsed time: 02:12:09s. Time for last 1,000,000: 0s. Last read position: */* INFO 2026-06-03 22:30:06 SinglePassSamProgram Processed 643,000,000 records. Elapsed time: 02:12:10s. Time for last 1,000,000: 0s. Last read position: */* [Wed Jun 03 22:30:08 GMT 2026] picard.analysis.CollectRnaSeqMetrics done. Elapsed time: 132.24 minutes. Runtime.totalMemory()=3476029440