File Info

Filename
fi_workdir/Log.final.out
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/d1/2740f5a4696d2939b71d3c956c795e/fi_workdir/Log.final.out
Size
2.0 KB
Attempt
                                 Started job on |	Jun 03 21:26:02
                             Started mapping on |	Jun 03 21:32:45
                                    Finished on |	Jun 03 22:27:55
       Mapping speed, Million of reads per hour |	294.31

                          Number of input reads |	270604674
                      Average input read length |	249
                                    UNIQUE READS:
                   Uniquely mapped reads number |	259273198
                        Uniquely mapped reads % |	95.81%
                          Average mapped length |	248.72
                       Number of splices: Total |	241006436
            Number of splices: Annotated (sjdb) |	237100222
                       Number of splices: GT/AG |	238142235
                       Number of splices: GC/AG |	1642486
                       Number of splices: AT/AC |	171860
               Number of splices: Non-canonical |	1049855
                      Mismatch rate per base, % |	0.33%
                         Deletion rate per base |	0.02%
                        Deletion average length |	1.96
                        Insertion rate per base |	0.00%
                       Insertion average length |	1.72
                             MULTI-MAPPING READS:
        Number of reads mapped to multiple loci |	8625772
             % of reads mapped to multiple loci |	3.19%
        Number of reads mapped to too many loci |	535484
             % of reads mapped to too many loci |	0.20%
                                  UNMAPPED READS:
  Number of reads unmapped: too many mismatches |	0
       % of reads unmapped: too many mismatches |	0.00%
            Number of reads unmapped: too short |	1862006
                 % of reads unmapped: too short |	0.69%
                Number of reads unmapped: other |	308214
                     % of reads unmapped: other |	0.11%
                                  CHIMERIC READS:
                       Number of chimeric reads |	0
                            % of chimeric reads |	0.00%