File Info

Filename
.command.log
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/5b/05ff021ea996adbb1a57aac6b15379/.command.log
Size
4.7 KB
Task
NFCORE_RNAFUSION:RNAFUSION:FUSIONREPORT_WORKFLOW:FUSIONREPORT (aih-tih-sc-01eb49-R1_A23YTGFLT4_1)
Attempt

Content

View in new tab 
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/e6/a1497969f3f99a19f97b7177528f52/aih-tih-sc-01eb49-R1_A23YTGFLT4_1.starfusion.starfusion.fusion_predictions.filtered_pass_only.tsv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/stage-e543dae6-5fea-4720-bfb6-150bf1ff20d4/82/1bfcba5045fc10a52ca200a4890a9a/dummy_file_fusioncatcher.txt
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/5b/05ff021ea996adbb1a57aac6b15379/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/3e/120a90d69bee158154f88b6949a465/aih-tih-sc-01eb49-R1_A23YTGFLT4_1.arriba.fusions.filtered_pass_only.tsv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/5b/05ff021ea996adbb1a57aac6b15379/.command.run
  Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/rna/GRCh38/fusion_report_db
==> STAGING COMPLETE (6 inputs)

Running application...
ACIN1--HOMEZ
starfusion
arriba
PHF12--JMJD1C
starfusion
arriba
AC015712.1--KLK9
starfusion
FANCI--ABHD2
starfusion
arriba
RABGAP1L--CACYBP
starfusion
TLK2--FAM157A
starfusion
RNASE10--CD38
starfusion
RPSAP52--HMGA2
starfusion
CPSF6--FRA10AC1
starfusion
CLTC--VMP1
starfusion
F8--IKBKG
starfusion
TVP23C--CDRT4
arriba
AC015911.9--SLFN12L
arriba
GRB2--GRB2
arriba
E2F1--ZNF341
arriba
PXMP4--ZNF341
arriba
MTAP--H3P30
arriba
MTAP--KHSRPP1
arriba
KANSL1--ARL17B
arriba

  0%|          | 0/19 [00:00<?, ?it/s]
Processing ACIN1--HOMEZ:   0%|          | 0/19 [00:00<?, ?it/s]
Processing ACIN1--HOMEZ:   5%|▌         | 1/19 [00:00<00:02,  8.67it/s]
Processing PHF12--JMJD1C:   5%|▌         | 1/19 [00:00<00:02,  8.67it/s]
Processing PHF12--JMJD1C:  11%|█         | 2/19 [00:00<00:01,  9.07it/s]
Processing AC015712.1--KLK9:  11%|█         | 2/19 [00:00<00:01,  9.07it/s]
Processing AC015712.1--KLK9:  16%|█▌        | 3/19 [00:00<00:01,  9.20it/s]
Processing FANCI--ABHD2:  16%|█▌        | 3/19 [00:00<00:01,  9.20it/s]    
Processing FANCI--ABHD2:  21%|██        | 4/19 [00:00<00:01,  9.27it/s]
Processing RABGAP1L--CACYBP:  21%|██        | 4/19 [00:00<00:01,  9.27it/s]
Processing RABGAP1L--CACYBP:  26%|██▋       | 5/19 [00:00<00:01,  9.31it/s]
Processing TLK2--FAM157A:  26%|██▋       | 5/19 [00:00<00:01,  9.31it/s]   
Processing TLK2--FAM157A:  32%|███▏      | 6/19 [00:00<00:01,  9.32it/s]
Processing RNASE10--CD38:  32%|███▏      | 6/19 [00:00<00:01,  9.32it/s]
Processing RNASE10--CD38:  37%|███▋      | 7/19 [00:00<00:01,  9.34it/s]
Processing RPSAP52--HMGA2:  37%|███▋      | 7/19 [00:00<00:01,  9.34it/s]
Processing RPSAP52--HMGA2:  42%|████▏     | 8/19 [00:00<00:01,  9.35it/s]
Processing CPSF6--FRA10AC1:  42%|████▏     | 8/19 [00:00<00:01,  9.35it/s]
Processing CPSF6--FRA10AC1:  47%|████▋     | 9/19 [00:00<00:01,  9.36it/s]
Processing CLTC--VMP1:  47%|████▋     | 9/19 [00:00<00:01,  9.36it/s]     
Processing CLTC--VMP1:  53%|█████▎    | 10/19 [00:01<00:00,  9.36it/s]
Processing F8--IKBKG:  53%|█████▎    | 10/19 [00:01<00:00,  9.36it/s] 
Processing F8--IKBKG:  58%|█████▊    | 11/19 [00:01<00:00,  9.37it/s]
Processing TVP23C--CDRT4:  58%|█████▊    | 11/19 [00:01<00:00,  9.37it/s]
Processing TVP23C--CDRT4:  63%|██████▎   | 12/19 [00:01<00:00,  9.37it/s]
Processing AC015911.9--SLFN12L:  63%|██████▎   | 12/19 [00:01<00:00,  9.37it/s]
Processing AC015911.9--SLFN12L:  68%|██████▊   | 13/19 [00:01<00:00,  9.37it/s]
Processing GRB2--GRB2:  68%|██████▊   | 13/19 [00:01<00:00,  9.37it/s]         
Processing GRB2--GRB2:  74%|███████▎  | 14/19 [00:01<00:00,  9.37it/s]
Processing E2F1--ZNF341:  74%|███████▎  | 14/19 [00:01<00:00,  9.37it/s]
Processing E2F1--ZNF341:  79%|███████▉  | 15/19 [00:01<00:00,  9.37it/s]
Processing PXMP4--ZNF341:  79%|███████▉  | 15/19 [00:01<00:00,  9.37it/s]
Processing PXMP4--ZNF341:  84%|████████▍ | 16/19 [00:01<00:00,  9.37it/s]
Processing MTAP--H3P30:  84%|████████▍ | 16/19 [00:01<00:00,  9.37it/s]  
Processing MTAP--H3P30:  89%|████████▉ | 17/19 [00:01<00:00,  9.37it/s]
Processing MTAP--KHSRPP1:  89%|████████▉ | 17/19 [00:01<00:00,  9.37it/s]
Processing MTAP--KHSRPP1:  95%|█████████▍| 18/19 [00:01<00:00,  9.37it/s]
Processing KANSL1--ARL17B:  95%|█████████▍| 18/19 [00:01<00:00,  9.37it/s]
Processing KANSL1--ARL17B: 100%|██████████| 19/19 [00:02<00:00,  9.37it/s]
Processing KANSL1--ARL17B: 100%|██████████| 19/19 [00:02<00:00,  9.33it/s]
cat: fusion_report_db/DB-timestamp.txt: No such file or directory