Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/99/098e407f6d78e06085599d99b34113/aih-tih-sc-3282fd-R1_A23YTGFLT4_1.Aligned.sortedByCoord.out.bam
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/d0/db0390e137cf3062481f869034d2c8/ref_annot.bed
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/24/a255b7ea18dc43184c2c1e50f2bdbb/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/24/a255b7ea18dc43184c2c1e50f2bdbb/.command.run
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/a1/6e4fd48fc43010ff4b273ea57c4b3f/aih-tih-sc-3282fd-R1_A23YTGFLT4_1.Aligned.sortedByCoord.out.bam.bai
==> STAGING COMPLETE (5 inputs)

[W::hts_idx_load3] The index file is older than the data file: aih-tih-sc-3282fd-R1_A23YTGFLT4_1.Aligned.sortedByCoord.out.bam.bai
reading reference bed file:  ref_annot.bed  ...  Done! Total 386135 known splicing junctions.
Load BAM file ...  Done
shuffling alignments ... Done
sampling 5% (11132525) splicing reads. 247591 splicing junctions. 181834 known splicing junctions. 65757 novel splicing junctions.
sampling 10% (22265050) splicing reads. 298303 splicing junctions. 193727 known splicing junctions. 104576 novel splicing junctions.
sampling 15% (33397575) splicing reads. 332934 splicing junctions. 199977 known splicing junctions. 132957 novel splicing junctions.
sampling 20% (44530100) splicing reads. 358880 splicing junctions. 204019 known splicing junctions. 154861 novel splicing junctions.
sampling 25% (55662625) splicing reads. 379240 splicing junctions. 206898 known splicing junctions. 172342 novel splicing junctions.
sampling 30% (66795150) splicing reads. 395769 splicing junctions. 209037 known splicing junctions. 186732 novel splicing junctions.
sampling 35% (77927675) splicing reads. 409345 splicing junctions. 210734 known splicing junctions. 198611 novel splicing junctions.
sampling 40% (89060200) splicing reads. 420847 splicing junctions. 212000 known splicing junctions. 208847 novel splicing junctions.
sampling 45% (100192725) splicing reads. 430484 splicing junctions. 213037 known splicing junctions. 217447 novel splicing junctions.
sampling 50% (111325250) splicing reads. 438518 splicing junctions. 213922 known splicing junctions. 224596 novel splicing junctions.
sampling 55% (122457775) splicing reads. 445484 splicing junctions. 214661 known splicing junctions. 230823 novel splicing junctions.
sampling 60% (133590300) splicing reads. 451430 splicing junctions. 215271 known splicing junctions. 236159 novel splicing junctions.
sampling 65% (144722825) splicing reads. 456580 splicing junctions. 215782 known splicing junctions. 240798 novel splicing junctions.
sampling 70% (155855350) splicing reads. 460816 splicing junctions. 216195 known splicing junctions. 244621 novel splicing junctions.
sampling 75% (166987875) splicing reads. 464506 splicing junctions. 216603 known splicing junctions. 247903 novel splicing junctions.
sampling 80% (178120400) splicing reads. 467524 splicing junctions. 216902 known splicing junctions. 250622 novel splicing junctions.
sampling 85% (189252925) splicing reads. 469944 splicing junctions. 217139 known splicing junctions. 252805 novel splicing junctions.
sampling 90% (200385450) splicing reads. 471881 splicing junctions. 217327 known splicing junctions. 254554 novel splicing junctions.
sampling 95% (211517975) splicing reads. 473259 splicing junctions. 217483 known splicing junctions. 255776 novel splicing junctions.
sampling 100% (222650500) splicing reads. 474147 splicing junctions. 217569 known splicing junctions. 256578 novel splicing junctions.
null device 
          1