Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ed/b69719186b5b6f492fe018d95d6a9a/.command.sh
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/a3/17a3d70b64a30cb7853f776d1e3e39/aih-tih-sc-377071-R1_A23YTGFLT4_1.Aligned.sortedByCoord.out.bam
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ed/b69719186b5b6f492fe018d95d6a9a/.command.run
==> STAGING COMPLETE (3 inputs)
/usr/local/bin/picard: line 5: warning: setlocale: LC_ALL: cannot change locale (en_US.UTF-8): No such file or directory
INFO 2026-06-03 20:12:54 RExecutor Executing R script via command: Rscript /tmp/script7380489906178107446.R
ERROR 2026-06-03 20:12:54 ProcessExecutor /bin/sh: warning: setlocale: LC_ALL: cannot change locale (en_US.UTF-8)
ERROR 2026-06-03 20:12:54 ProcessExecutor sh: warning: setlocale: LC_ALL: cannot change locale (en_US.UTF-8)
ERROR 2026-06-03 20:12:54 ProcessExecutor sh: warning: setlocale: LC_ALL: cannot change locale (en_US.UTF-8)
ERROR 2026-06-03 20:12:54 ProcessExecutor During startup - Warning messages:
ERROR 2026-06-03 20:12:54 ProcessExecutor 1: Setting LC_CTYPE failed, using "C"
ERROR 2026-06-03 20:12:54 ProcessExecutor 2: Setting LC_COLLATE failed, using "C"
ERROR 2026-06-03 20:12:54 ProcessExecutor 3: Setting LC_TIME failed, using "C"
ERROR 2026-06-03 20:12:54 ProcessExecutor 4: Setting LC_MESSAGES failed, using "C"
ERROR 2026-06-03 20:12:54 ProcessExecutor 5: Setting LC_MONETARY failed, using "C"
ERROR 2026-06-03 20:12:54 ProcessExecutor 6: Setting LC_PAPER failed, using "C"
ERROR 2026-06-03 20:12:54 ProcessExecutor 7: Setting LC_MEASUREMENT failed, using "C"
INFO 2026-06-03 20:12:54 ProcessExecutor [1] "Checking if R is installed"
ERROR 2026-06-03 20:12:54 ProcessExecutor sh: warning: setlocale: LC_ALL: cannot change locale (en_US.UTF-8)
Jun 03, 2026 8:12:54 PM com.intel.gkl.NativeLibraryLoader load
INFO: Loading libgkl_compression.so from jar:file:/usr/local/share/picard-3.1.0-0/picard.jar!/com/intel/gkl/native/libgkl_compression.so
[Wed Jun 03 20:12:54 GMT 2026] CollectInsertSizeMetrics --Histogram_FILE aih-tih-sc-377071-R1_A23YTGFLT4_1_collectinsertsize.pdf --INPUT aih-tih-sc-377071-R1_A23YTGFLT4_1.Aligned.sortedByCoord.out.bam --OUTPUT aih-tih-sc-377071-R1_A23YTGFLT4_1_collectinsertsize.txt --DEVIATIONS 10.0 --MINIMUM_PCT 0.05 --METRIC_ACCUMULATION_LEVEL ALL_READS --INCLUDE_DUPLICATES false --ASSUME_SORTED true --STOP_AFTER 0 --VERBOSITY INFO --QUIET false --VALIDATION_STRINGENCY STRICT --COMPRESSION_LEVEL 5 --MAX_RECORDS_IN_RAM 500000 --CREATE_INDEX false --CREATE_MD5_FILE false --help false --version false --showHidden false --USE_JDK_DEFLATER false --USE_JDK_INFLATER false
[Wed Jun 03 20:12:55 GMT 2026] Executing as ?@nf-edb69719186b5b6f492fe018d95d6a9a-40dfd-hsmrf on Linux 6.12.88 amd64; OpenJDK 64-Bit Server VM 20-internal-adhoc..src; Deflater: Intel; Inflater: Intel; Provider GCS is available; Picard version: Version:3.1.0
INFO 2026-06-03 20:12:56 SinglePassSamProgram Processed 1,000,000 records. Elapsed time: 00:00:01s. Time for last 1,000,000: 1s. Last read position: chr1:1,046,661
INFO 2026-06-03 20:12:57 SinglePassSamProgram Processed 2,000,000 records. Elapsed time: 00:00:02s. Time for last 1,000,000: 0s. Last read position: chr1:1,333,740
INFO 2026-06-03 20:12:57 SinglePassSamProgram Processed 3,000,000 records. Elapsed time: 00:00:02s. Time for last 1,000,000: 0s. Last read position: chr1:1,624,846
INFO 2026-06-03 20:12:58 SinglePassSamProgram Processed 4,000,000 records. Elapsed time: 00:00:03s. Time for last 1,000,000: 0s. Last read position: chr1:3,463,163
INFO 2026-06-03 20:12:59 SinglePassSamProgram Processed 5,000,000 records. Elapsed time: 00:00:04s. Time for last 1,000,000: 0s. Last read position: chr1:7,970,892
INFO 2026-06-03 20:13:00 SinglePassSamProgram Processed 6,000,000 records. Elapsed time: 00:00:05s. Time for last 1,000,000: 0s. Last read position: chr1:8,865,423
INFO 2026-06-03 20:13:01 SinglePassSamProgram Processed 7,000,000 records. Elapsed time: 00:00:06s. Time for last 1,000,000: 0s. Last read position: chr1:10,404,202
INFO 2026-06-03 20:13:01 SinglePassSamProgram Processed 8,000,000 records. Elapsed time: 00:00:06s. Time for last 1,000,000: 0s. Last read position: chr1:11,790,546
INFO 2026-06-03 20:13:02 SinglePassSamProgram Processed 9,000,000 records. Elapsed time: 00:00:07s. Time for last 1,000,000: 0s. Last read position: chr1:15,409,942
INFO 2026-06-03 20:13:03 SinglePassSamProgram Processed 10,000,000 records. Elapsed time: 00:00:08s. Time for last 1,000,000: 0s. Last read position: chr1:16,574,599
INFO 2026-06-03 20:13:04 SinglePassSamProgram Processed 11,000,000 records. Elapsed time: 00:00:09s. Time for last 1,000,000: 0s. Last read position: chr1:18,745,240
INFO 2026-06-03 20:13:05 SinglePassSamProgram Processed 12,000,000 records. Elapsed time: 00:00:09s. Time for last 1,000,000: 0s. Last read position: chr1:19,339,459
INFO 2026-06-03 20:13:05 SinglePassSamProgram Processed 13,000,000 records. Elapsed time: 00:00:10s. Time for last 1,000,000: 0s. Last read position: chr1:21,560,739
INFO 2026-06-03 20:13:06 SinglePassSamProgram Processed 14,000,000 records. Elapsed time: 00:00:11s. Time for last 1,000,000: 0s. Last read position: chr1:21,617,933
INFO 2026-06-03 20:13:07 SinglePassSamProgram Processed 15,000,000 records. Elapsed time: 00:00:12s. Time for last 1,000,000: 0s. Last read position: chr1:21,850,457
INFO 2026-06-03 20:13:08 SinglePassSamProgram Processed 16,000,000 records. Elapsed time: 00:00:13s. Time for last 1,000,000: 0s. Last read position: chr1:22,086,667
INFO 2026-06-03 20:13:08 SinglePassSamProgram Processed 17,000,000 records. Elapsed time: 00:00:13s. Time for last 1,000,000: 0s. Last read position: chr1:23,310,908
INFO 2026-06-03 20:13:09 SinglePassSamProgram Processed 18,000,000 records. Elapsed time: 00:00:14s. Time for last 1,000,000: 0s. Last read position: chr1:25,338,438
INFO 2026-06-03 20:13:10 SinglePassSamProgram Processed 19,000,000 records. Elapsed time: 00:00:15s. Time for last 1,000,000: 0s. Last read position: chr1:26,775,038
INFO 2026-06-03 20:13:11 SinglePassSamProgram Processed 20,000,000 records. Elapsed time: 00:00:16s. Time for last 1,000,000: 0s. Last read position: chr1:27,666,369
INFO 2026-06-03 20:13:11 SinglePassSamProgram Processed 21,000,000 records. Elapsed time: 00:00:16s. Time for last 1,000,000: 0s. Last read position: chr1:28,203,761
INFO 2026-06-03 20:13:12 SinglePassSamProgram Processed 22,000,000 records. Elapsed time: 00:00:17s. Time for last 1,000,000: 0s. Last read position: chr1:30,974,786
INFO 2026-06-03 20:13:13 SinglePassSamProgram Processed 23,000,000 records. Elapsed time: 00:00:18s. Time for last 1,000,000: 0s. Last read position: chr1:32,207,572
INFO 2026-06-03 20:13:14 SinglePassSamProgram Processed 24,000,000 records. Elapsed time: 00:00:19s. Time for last 1,000,000: 0s. Last read position: chr1:33,021,662
INFO 2026-06-03 20:13:15 SinglePassSamProgram Processed 25,000,000 records. Elapsed time: 00:00:19s. Time for last 1,000,000: 0s. Last read position: chr1:35,906,927
INFO 2026-06-03 20:13:15 SinglePassSamProgram Processed 26,000,000 records. Elapsed time: 00:00:20s. Time for last 1,000,000: 0s. Last read position: chr1:37,873,995
INFO 2026-06-03 20:13:16 SinglePassSamProgram Processed 27,000,000 records. Elapsed time: 00:00:21s. Time for last 1,000,000: 0s. Last read position: chr1:39,561,624
INFO 2026-06-03 20:13:17 SinglePassSamProgram Processed 28,000,000 records. Elapsed time: 00:00:22s. Time for last 1,000,000: 0s. Last read position: chr1:42,459,616
INFO 2026-06-03 20:13:18 SinglePassSamProgram Processed 29,000,000 records. Elapsed time: 00:00:23s. Time for last 1,000,000: 0s. Last read position: chr1:43,591,124
INFO 2026-06-03 20:13:18 SinglePassSamProgram Processed 30,000,000 records. Elapsed time: 00:00:23s. Time for last 1,000,000: 0s. Last read position: chr1:44,649,677
INFO 2026-06-03 20:13:19 SinglePassSamProgram Processed 31,000,000 records. Elapsed time: 00:00:24s. Time for last 1,000,000: 0s. Last read position: chr1:46,184,237
INFO 2026-06-03 20:13:20 SinglePassSamProgram Processed 32,000,000 records. Elapsed time: 00:00:25s. Time for last 1,000,000: 0s. Last read position: chr1:51,236,748
INFO 2026-06-03 20:13:21 SinglePassSamProgram Processed 33,000,000 records. Elapsed time: 00:00:26s. Time for last 1,000,000: 0s. Last read position: chr1:54,200,829
INFO 2026-06-03 20:13:21 SinglePassSamProgram Processed 34,000,000 records. Elapsed time: 00:00:26s. Time for last 1,000,000: 0s. Last read position: chr1:70,274,771
INFO 2026-06-03 20:13:22 SinglePassSamProgram Processed 35,000,000 records. Elapsed time: 00:00:27s. Time for last 1,000,000: 0s. Last read position: chr1:90,939,131
INFO 2026-06-03 20:13:23 SinglePassSamProgram Processed 36,000,000 records. Elapsed time: 00:00:28s. Time for last 1,000,000: 0s. Last read position: chr1:108,200,022
INFO 2026-06-03 20:13:24 SinglePassSamProgram Processed 37,000,000 records. Elapsed time: 00:00:29s. Time for last 1,000,000: 0s. Last read position: chr1:112,694,535
INFO 2026-06-03 20:13:24 SinglePassSamProgram Processed 38,000,000 records. Elapsed time: 00:00:29s. Time for last 1,000,000: 0s. Last read position: chr1:117,118,227
INFO 2026-06-03 20:13:25 SinglePassSamProgram Processed 39,000,000 records. Elapsed time: 00:00:30s. Time for last 1,000,000: 0s. Last read position: chr1:119,949,044
INFO 2026-06-03 20:13:26 SinglePassSamProgram Processed 40,000,000 records. Elapsed time: 00:00:31s. Time for last 1,000,000: 0s. Last read position: chr1:121,564,870
INFO 2026-06-03 20:13:27 SinglePassSamProgram Processed 41,000,000 records. Elapsed time: 00:00:32s. Time for last 1,000,000: 0s. Last read position: chr1:146,128,224
INFO 2026-06-03 20:13:27 SinglePassSamProgram Processed 42,000,000 records. Elapsed time: 00:00:32s. Time for last 1,000,000: 0s. Last read position: chr1:148,124,891
INFO 2026-06-03 20:13:28 SinglePassSamProgram Processed 43,000,000 records. Elapsed time: 00:00:33s. Time for last 1,000,000: 0s. Last read position: chr1:149,455,391
INFO 2026-06-03 20:13:29 SinglePassSamProgram Processed 44,000,000 records. Elapsed time: 00:00:34s. Time for last 1,000,000: 0s. Last read position: chr1:150,442,983
INFO 2026-06-03 20:13:30 SinglePassSamProgram Processed 45,000,000 records. Elapsed time: 00:00:35s. Time for last 1,000,000: 0s. Last read position: chr1:150,997,250
INFO 2026-06-03 20:13:30 SinglePassSamProgram Processed 46,000,000 records. Elapsed time: 00:00:35s. Time for last 1,000,000: 0s. Last read position: chr1:151,524,279
INFO 2026-06-03 20:13:31 SinglePassSamProgram Processed 47,000,000 records. Elapsed time: 00:00:36s. Time for last 1,000,000: 0s. Last read position: chr1:153,772,398
INFO 2026-06-03 20:13:32 SinglePassSamProgram Processed 48,000,000 records. Elapsed time: 00:00:37s. Time for last 1,000,000: 0s. Last read position: chr1:154,183,012
INFO 2026-06-03 20:13:33 SinglePassSamProgram Processed 49,000,000 records. Elapsed time: 00:00:37s. Time for last 1,000,000: 0s. Last read position: chr1:154,945,688
INFO 2026-06-03 20:13:33 SinglePassSamProgram Processed 50,000,000 records. Elapsed time: 00:00:38s. Time for last 1,000,000: 0s. Last read position: chr1:155,054,176
INFO 2026-06-03 20:13:34 SinglePassSamProgram Processed 51,000,000 records. Elapsed time: 00:00:39s. Time for last 1,000,000: 0s. Last read position: chr1:155,187,759
INFO 2026-06-03 20:13:35 SinglePassSamProgram Processed 52,000,000 records. Elapsed time: 00:00:40s. Time for last 1,000,000: 0s. Last read position: chr1:155,214,308
INFO 2026-06-03 20:13:35 SinglePassSamProgram Processed 53,000,000 records. Elapsed time: 00:00:40s. Time for last 1,000,000: 0s. Last read position: chr1:155,764,856
INFO 2026-06-03 20:13:36 SinglePassSamProgram Processed 54,000,000 records. Elapsed time: 00:00:41s. Time for last 1,000,000: 0s. Last read position: chr1:156,136,993
INFO 2026-06-03 20:13:37 SinglePassSamProgram Processed 55,000,000 records. Elapsed time: 00:00:42s. Time for last 1,000,000: 0s. Last read position: chr1:156,729,069
INFO 2026-06-03 20:13:38 SinglePassSamProgram Processed 56,000,000 records. Elapsed time: 00:00:43s. Time for last 1,000,000: 0s. Last read position: chr1:160,292,143
INFO 2026-06-03 20:13:39 SinglePassSamProgram Processed 57,000,000 records. Elapsed time: 00:00:43s. Time for last 1,000,000: 0s. Last read position: chr1:161,323,644
INFO 2026-06-03 20:13:39 SinglePassSamProgram Processed 58,000,000 records. Elapsed time: 00:00:44s. Time for last 1,000,000: 0s. Last read position: chr1:167,542,138
INFO 2026-06-03 20:13:40 SinglePassSamProgram Processed 59,000,000 records. Elapsed time: 00:00:45s. Time for last 1,000,000: 0s. Last read position: chr1:169,111,419
INFO 2026-06-03 20:13:41 SinglePassSamProgram Processed 60,000,000 records. Elapsed time: 00:00:46s. Time for last 1,000,000: 0s. Last read position: chr1:169,127,378
INFO 2026-06-03 20:13:41 SinglePassSamProgram Processed 61,000,000 records. Elapsed time: 00:00:46s. Time for last 1,000,000: 0s. Last read position: chr1:169,611,500
INFO 2026-06-03 20:13:42 SinglePassSamProgram Processed 62,000,000 records. Elapsed time: 00:00:47s. Time for last 1,000,000: 0s. Last read position: chr1:175,000,156
INFO 2026-06-03 20:13:43 SinglePassSamProgram Processed 63,000,000 records. Elapsed time: 00:00:48s. Time for last 1,000,000: 0s. Last read position: chr1:181,089,037
INFO 2026-06-03 20:13:44 SinglePassSamProgram Processed 64,000,000 records. Elapsed time: 00:00:49s. Time for last 1,000,000: 0s. Last read position: chr1:184,708,155
INFO 2026-06-03 20:13:44 SinglePassSamProgram Processed 65,000,000 records. Elapsed time: 00:00:49s. Time for last 1,000,000: 0s. Last read position: chr1:192,579,142
INFO 2026-06-03 20:13:45 SinglePassSamProgram Processed 66,000,000 records. Elapsed time: 00:00:50s. Time for last 1,000,000: 0s. Last read position: chr1:201,783,817
INFO 2026-06-03 20:13:46 SinglePassSamProgram Processed 67,000,000 records. Elapsed time: 00:00:51s. Time for last 1,000,000: 0s. Last read position: chr1:203,216,888
INFO 2026-06-03 20:13:47 SinglePassSamProgram Processed 68,000,000 records. Elapsed time: 00:00:52s. Time for last 1,000,000: 0s. Last read position: chr1:203,863,668
INFO 2026-06-03 20:13:47 SinglePassSamProgram Processed 69,000,000 records. Elapsed time: 00:00:52s. Time for last 1,000,000: 0s. Last read position: chr1:206,930,358
INFO 2026-06-03 20:13:48 SinglePassSamProgram Processed 70,000,000 records. Elapsed time: 00:00:53s. Time for last 1,000,000: 0s. Last read position: chr1:209,625,816
INFO 2026-06-03 20:13:49 SinglePassSamProgram Processed 71,000,000 records. Elapsed time: 00:00:54s. Time for last 1,000,000: 0s. Last read position: chr1:220,102,129
INFO 2026-06-03 20:13:50 SinglePassSamProgram Processed 72,000,000 records. Elapsed time: 00:00:55s. Time for last 1,000,000: 0s. Last read position: chr1:223,802,166
INFO 2026-06-03 20:13:51 SinglePassSamProgram Processed 73,000,000 records. Elapsed time: 00:00:56s. Time for last 1,000,000: 0s. Last read position: chr1:226,064,360
INFO 2026-06-03 20:13:52 SinglePassSamProgram Processed 74,000,000 records. Elapsed time: 00:00:57s. Time for last 1,000,000: 0s. Last read position: chr1:228,288,208
INFO 2026-06-03 20:13:53 SinglePassSamProgram Processed 75,000,000 records. Elapsed time: 00:00:58s. Time for last 1,000,000: 0s. Last read position: chr1:232,445,705
INFO 2026-06-03 20:13:54 SinglePassSamProgram Processed 76,000,000 records. Elapsed time: 00:00:59s. Time for last 1,000,000: 0s. Last read position: chr1:236,526,036
INFO 2026-06-03 20:13:55 SinglePassSamProgram Processed 77,000,000 records. Elapsed time: 00:00:59s. Time for last 1,000,000: 0s. Last read position: chr1:244,864,130
INFO 2026-06-03 20:13:55 SinglePassSamProgram Processed 78,000,000 records. Elapsed time: 00:01:00s. Time for last 1,000,000: 0s. Last read position: chr2:3,576,544
INFO 2026-06-03 20:13:56 SinglePassSamProgram Processed 79,000,000 records. Elapsed time: 00:01:01s. Time for last 1,000,000: 0s. Last read position: chr2:11,618,447
INFO 2026-06-03 20:13:57 SinglePassSamProgram Processed 80,000,000 records. Elapsed time: 00:01:02s. Time for last 1,000,000: 0s. Last read position: chr2:20,447,735
INFO 2026-06-03 20:13:58 SinglePassSamProgram Processed 81,000,000 records. Elapsed time: 00:01:03s. Time for last 1,000,000: 0s. Last read position: chr2:26,278,677
INFO 2026-06-03 20:13:59 SinglePassSamProgram Processed 82,000,000 records. Elapsed time: 00:01:04s. Time for last 1,000,000: 0s. Last read position: chr2:27,498,267
INFO 2026-06-03 20:14:00 SinglePassSamProgram Processed 83,000,000 records. Elapsed time: 00:01:05s. Time for last 1,000,000: 0s. Last read position: chr2:32,439,580
INFO 2026-06-03 20:14:01 SinglePassSamProgram Processed 84,000,000 records. Elapsed time: 00:01:06s. Time for last 1,000,000: 1s. Last read position: chr2:32,916,264
INFO 2026-06-03 20:14:01 SinglePassSamProgram Processed 85,000,000 records. Elapsed time: 00:01:06s. Time for last 1,000,000: 0s. Last read position: chr2:32,916,351
INFO 2026-06-03 20:14:02 SinglePassSamProgram Processed 86,000,000 records. Elapsed time: 00:01:07s. Time for last 1,000,000: 0s. Last read position: chr2:32,916,406
INFO 2026-06-03 20:14:03 SinglePassSamProgram Processed 87,000,000 records. Elapsed time: 00:01:08s. Time for last 1,000,000: 0s. Last read position: chr2:38,318,939
INFO 2026-06-03 20:14:04 SinglePassSamProgram Processed 88,000,000 records. Elapsed time: 00:01:08s. Time for last 1,000,000: 0s. Last read position: chr2:43,787,181
INFO 2026-06-03 20:14:04 SinglePassSamProgram Processed 89,000,000 records. Elapsed time: 00:01:09s. Time for last 1,000,000: 0s. Last read position: chr2:48,440,989
INFO 2026-06-03 20:14:05 SinglePassSamProgram Processed 90,000,000 records. Elapsed time: 00:01:10s. Time for last 1,000,000: 0s. Last read position: chr2:55,317,594
INFO 2026-06-03 20:14:06 SinglePassSamProgram Processed 91,000,000 records. Elapsed time: 00:01:11s. Time for last 1,000,000: 0s. Last read position: chr2:63,857,843
INFO 2026-06-03 20:14:07 SinglePassSamProgram Processed 92,000,000 records. Elapsed time: 00:01:12s. Time for last 1,000,000: 0s. Last read position: chr2:69,829,840
INFO 2026-06-03 20:14:07 SinglePassSamProgram Processed 93,000,000 records. Elapsed time: 00:01:12s. Time for last 1,000,000: 0s. Last read position: chr2:73,946,773
INFO 2026-06-03 20:14:08 SinglePassSamProgram Processed 94,000,000 records. Elapsed time: 00:01:13s. Time for last 1,000,000: 0s. Last read position: chr2:85,134,023
INFO 2026-06-03 20:14:09 SinglePassSamProgram Processed 95,000,000 records. Elapsed time: 00:01:14s. Time for last 1,000,000: 0s. Last read position: chr2:85,661,495
INFO 2026-06-03 20:14:10 SinglePassSamProgram Processed 96,000,000 records. Elapsed time: 00:01:15s. Time for last 1,000,000: 0s. Last read position: chr2:85,663,823
INFO 2026-06-03 20:14:11 SinglePassSamProgram Processed 97,000,000 records. Elapsed time: 00:01:16s. Time for last 1,000,000: 0s. Last read position: chr2:85,666,626
INFO 2026-06-03 20:14:11 SinglePassSamProgram Processed 98,000,000 records. Elapsed time: 00:01:16s. Time for last 1,000,000: 0s. Last read position: chr2:86,765,989
INFO 2026-06-03 20:14:12 SinglePassSamProgram Processed 99,000,000 records. Elapsed time: 00:01:17s. Time for last 1,000,000: 0s. Last read position: chr2:96,253,886
INFO 2026-06-03 20:14:13 SinglePassSamProgram Processed 100,000,000 records. Elapsed time: 00:01:18s. Time for last 1,000,000: 0s. Last read position: chr2:99,360,263
INFO 2026-06-03 20:14:14 SinglePassSamProgram Processed 101,000,000 records. Elapsed time: 00:01:19s. Time for last 1,000,000: 0s. Last read position: chr2:108,730,850
INFO 2026-06-03 20:14:14 SinglePassSamProgram Processed 102,000,000 records. Elapsed time: 00:01:19s. Time for last 1,000,000: 0s. Last read position: chr2:109,986,949
INFO 2026-06-03 20:14:15 SinglePassSamProgram Processed 103,000,000 records. Elapsed time: 00:01:20s. Time for last 1,000,000: 0s. Last read position: chr2:112,646,911
INFO 2026-06-03 20:14:16 SinglePassSamProgram Processed 104,000,000 records. Elapsed time: 00:01:21s. Time for last 1,000,000: 0s. Last read position: chr2:121,387,141
INFO 2026-06-03 20:14:17 SinglePassSamProgram Processed 105,000,000 records. Elapsed time: 00:01:22s. Time for last 1,000,000: 0s. Last read position: chr2:134,458,079
INFO 2026-06-03 20:14:17 SinglePassSamProgram Processed 106,000,000 records. Elapsed time: 00:01:22s. Time for last 1,000,000: 0s. Last read position: chr2:151,455,128
INFO 2026-06-03 20:14:18 SinglePassSamProgram Processed 107,000,000 records. Elapsed time: 00:01:23s. Time for last 1,000,000: 0s. Last read position: chr2:159,875,538
INFO 2026-06-03 20:14:19 SinglePassSamProgram Processed 108,000,000 records. Elapsed time: 00:01:24s. Time for last 1,000,000: 0s. Last read position: chr2:170,965,975
INFO 2026-06-03 20:14:20 SinglePassSamProgram Processed 109,000,000 records. Elapsed time: 00:01:25s. Time for last 1,000,000: 0s. Last read position: chr2:178,547,320
INFO 2026-06-03 20:14:21 SinglePassSamProgram Processed 110,000,000 records. Elapsed time: 00:01:25s. Time for last 1,000,000: 0s. Last read position: chr2:188,529,178
INFO 2026-06-03 20:14:21 SinglePassSamProgram Processed 111,000,000 records. Elapsed time: 00:01:26s. Time for last 1,000,000: 0s. Last read position: chr2:189,854,478
INFO 2026-06-03 20:14:22 SinglePassSamProgram Processed 112,000,000 records. Elapsed time: 00:01:27s. Time for last 1,000,000: 0s. Last read position: chr2:197,497,232
INFO 2026-06-03 20:14:23 SinglePassSamProgram Processed 113,000,000 records. Elapsed time: 00:01:28s. Time for last 1,000,000: 0s. Last read position: chr2:203,180,393
INFO 2026-06-03 20:14:24 SinglePassSamProgram Processed 114,000,000 records. Elapsed time: 00:01:29s. Time for last 1,000,000: 0s. Last read position: chr2:210,075,609
INFO 2026-06-03 20:14:24 SinglePassSamProgram Processed 115,000,000 records. Elapsed time: 00:01:29s. Time for last 1,000,000: 0s. Last read position: chr2:210,602,260
INFO 2026-06-03 20:14:25 SinglePassSamProgram Processed 116,000,000 records. Elapsed time: 00:01:30s. Time for last 1,000,000: 0s. Last read position: chr2:210,660,555
INFO 2026-06-03 20:14:26 SinglePassSamProgram Processed 117,000,000 records. Elapsed time: 00:01:31s. Time for last 1,000,000: 0s. Last read position: chr2:215,364,930
INFO 2026-06-03 20:14:27 SinglePassSamProgram Processed 118,000,000 records. Elapsed time: 00:01:32s. Time for last 1,000,000: 0s. Last read position: chr2:215,372,180
INFO 2026-06-03 20:14:28 SinglePassSamProgram Processed 119,000,000 records. Elapsed time: 00:01:33s. Time for last 1,000,000: 0s. Last read position: chr2:215,376,613
INFO 2026-06-03 20:14:28 SinglePassSamProgram Processed 120,000,000 records. Elapsed time: 00:01:33s. Time for last 1,000,000: 0s. Last read position: chr2:215,384,111
INFO 2026-06-03 20:14:29 SinglePassSamProgram Processed 121,000,000 records. Elapsed time: 00:01:34s. Time for last 1,000,000: 0s. Last read position: chr2:215,397,146
INFO 2026-06-03 20:14:30 SinglePassSamProgram Processed 122,000,000 records. Elapsed time: 00:01:35s. Time for last 1,000,000: 0s. Last read position: chr2:215,407,300
INFO 2026-06-03 20:14:31 SinglePassSamProgram Processed 123,000,000 records. Elapsed time: 00:01:36s. Time for last 1,000,000: 0s. Last read position: chr2:215,419,368
INFO 2026-06-03 20:14:31 SinglePassSamProgram Processed 124,000,000 records. Elapsed time: 00:01:36s. Time for last 1,000,000: 0s. Last read position: chr2:215,430,809
INFO 2026-06-03 20:14:32 SinglePassSamProgram Processed 125,000,000 records. Elapsed time: 00:01:37s. Time for last 1,000,000: 0s. Last read position: chr2:216,660,641
INFO 2026-06-03 20:14:33 SinglePassSamProgram Processed 126,000,000 records. Elapsed time: 00:01:38s. Time for last 1,000,000: 0s. Last read position: chr2:218,277,410
INFO 2026-06-03 20:14:34 SinglePassSamProgram Processed 127,000,000 records. Elapsed time: 00:01:39s. Time for last 1,000,000: 0s. Last read position: chr2:219,485,358
INFO 2026-06-03 20:14:35 SinglePassSamProgram Processed 128,000,000 records. Elapsed time: 00:01:40s. Time for last 1,000,000: 0s. Last read position: chr2:227,472,448
INFO 2026-06-03 20:14:35 SinglePassSamProgram Processed 129,000,000 records. Elapsed time: 00:01:40s. Time for last 1,000,000: 0s. Last read position: chr2:230,449,697
INFO 2026-06-03 20:14:36 SinglePassSamProgram Processed 130,000,000 records. Elapsed time: 00:01:41s. Time for last 1,000,000: 0s. Last read position: chr2:233,691,759
INFO 2026-06-03 20:14:37 SinglePassSamProgram Processed 131,000,000 records. Elapsed time: 00:01:42s. Time for last 1,000,000: 0s. Last read position: chr2:237,366,806
INFO 2026-06-03 20:14:38 SinglePassSamProgram Processed 132,000,000 records. Elapsed time: 00:01:43s. Time for last 1,000,000: 0s. Last read position: chr2:240,573,117
INFO 2026-06-03 20:14:39 SinglePassSamProgram Processed 133,000,000 records. Elapsed time: 00:01:43s. Time for last 1,000,000: 0s. Last read position: chr3:4,316,465
INFO 2026-06-03 20:14:39 SinglePassSamProgram Processed 134,000,000 records. Elapsed time: 00:01:44s. Time for last 1,000,000: 0s. Last read position: chr3:10,028,642
INFO 2026-06-03 20:14:40 SinglePassSamProgram Processed 135,000,000 records. Elapsed time: 00:01:45s. Time for last 1,000,000: 0s. Last read position: chr3:13,626,467
INFO 2026-06-03 20:14:41 SinglePassSamProgram Processed 136,000,000 records. Elapsed time: 00:01:46s. Time for last 1,000,000: 0s. Last read position: chr3:22,382,118
INFO 2026-06-03 20:14:42 SinglePassSamProgram Processed 137,000,000 records. Elapsed time: 00:01:47s. Time for last 1,000,000: 0s. Last read position: chr3:33,826,543
INFO 2026-06-03 20:14:42 SinglePassSamProgram Processed 138,000,000 records. Elapsed time: 00:01:47s. Time for last 1,000,000: 0s. Last read position: chr3:40,427,358
INFO 2026-06-03 20:14:43 SinglePassSamProgram Processed 139,000,000 records. Elapsed time: 00:01:48s. Time for last 1,000,000: 0s. Last read position: chr3:45,007,445
INFO 2026-06-03 20:14:44 SinglePassSamProgram Processed 140,000,000 records. Elapsed time: 00:01:49s. Time for last 1,000,000: 0s. Last read position: chr3:46,995,793
INFO 2026-06-03 20:14:45 SinglePassSamProgram Processed 141,000,000 records. Elapsed time: 00:01:50s. Time for last 1,000,000: 0s. Last read position: chr3:47,855,356
INFO 2026-06-03 20:14:45 SinglePassSamProgram Processed 142,000,000 records. Elapsed time: 00:01:50s. Time for last 1,000,000: 0s. Last read position: chr3:48,694,864
INFO 2026-06-03 20:14:46 SinglePassSamProgram Processed 143,000,000 records. Elapsed time: 00:01:51s. Time for last 1,000,000: 0s. Last read position: chr3:49,124,481
INFO 2026-06-03 20:14:47 SinglePassSamProgram Processed 144,000,000 records. Elapsed time: 00:01:52s. Time for last 1,000,000: 0s. Last read position: chr3:49,727,445
INFO 2026-06-03 20:14:48 SinglePassSamProgram Processed 145,000,000 records. Elapsed time: 00:01:53s. Time for last 1,000,000: 0s. Last read position: chr3:50,367,854
INFO 2026-06-03 20:14:48 SinglePassSamProgram Processed 146,000,000 records. Elapsed time: 00:01:53s. Time for last 1,000,000: 0s. Last read position: chr3:52,261,379
INFO 2026-06-03 20:14:49 SinglePassSamProgram Processed 147,000,000 records. Elapsed time: 00:01:54s. Time for last 1,000,000: 0s. Last read position: chr3:53,230,508
INFO 2026-06-03 20:14:50 SinglePassSamProgram Processed 148,000,000 records. Elapsed time: 00:01:55s. Time for last 1,000,000: 0s. Last read position: chr3:58,141,913
INFO 2026-06-03 20:14:51 SinglePassSamProgram Processed 149,000,000 records. Elapsed time: 00:01:56s. Time for last 1,000,000: 0s. Last read position: chr3:70,959,320
INFO 2026-06-03 20:14:52 SinglePassSamProgram Processed 150,000,000 records. Elapsed time: 00:01:57s. Time for last 1,000,000: 0s. Last read position: chr3:100,649,672
INFO 2026-06-03 20:14:52 SinglePassSamProgram Processed 151,000,000 records. Elapsed time: 00:01:57s. Time for last 1,000,000: 0s. Last read position: chr3:111,991,413
INFO 2026-06-03 20:14:53 SinglePassSamProgram Processed 152,000,000 records. Elapsed time: 00:01:58s. Time for last 1,000,000: 0s. Last read position: chr3:121,669,284
INFO 2026-06-03 20:14:54 SinglePassSamProgram Processed 153,000,000 records. Elapsed time: 00:01:59s. Time for last 1,000,000: 0s. Last read position: chr3:123,116,234
INFO 2026-06-03 20:14:55 SinglePassSamProgram Processed 154,000,000 records. Elapsed time: 00:02:00s. Time for last 1,000,000: 0s. Last read position: chr3:128,060,507
INFO 2026-06-03 20:14:55 SinglePassSamProgram Processed 155,000,000 records. Elapsed time: 00:02:00s. Time for last 1,000,000: 0s. Last read position: chr3:129,573,725
INFO 2026-06-03 20:14:56 SinglePassSamProgram Processed 156,000,000 records. Elapsed time: 00:02:01s. Time for last 1,000,000: 0s. Last read position: chr3:136,293,824
INFO 2026-06-03 20:14:57 SinglePassSamProgram Processed 157,000,000 records. Elapsed time: 00:02:02s. Time for last 1,000,000: 0s. Last read position: chr3:149,048,083
INFO 2026-06-03 20:14:58 SinglePassSamProgram Processed 158,000,000 records. Elapsed time: 00:02:03s. Time for last 1,000,000: 0s. Last read position: chr3:150,567,657
INFO 2026-06-03 20:14:58 SinglePassSamProgram Processed 159,000,000 records. Elapsed time: 00:02:03s. Time for last 1,000,000: 0s. Last read position: chr3:169,131,474
INFO 2026-06-03 20:14:59 SinglePassSamProgram Processed 160,000,000 records. Elapsed time: 00:02:04s. Time for last 1,000,000: 0s. Last read position: chr3:180,968,094
INFO 2026-06-03 20:15:00 SinglePassSamProgram Processed 161,000,000 records. Elapsed time: 00:02:05s. Time for last 1,000,000: 0s. Last read position: chr3:184,321,355
INFO 2026-06-03 20:15:01 SinglePassSamProgram Processed 162,000,000 records. Elapsed time: 00:02:06s. Time for last 1,000,000: 0s. Last read position: chr3:186,787,878
INFO 2026-06-03 20:15:01 SinglePassSamProgram Processed 163,000,000 records. Elapsed time: 00:02:06s. Time for last 1,000,000: 0s. Last read position: chr3:194,431,751
INFO 2026-06-03 20:15:02 SinglePassSamProgram Processed 164,000,000 records. Elapsed time: 00:02:07s. Time for last 1,000,000: 0s. Last read position: chr3:195,779,709
INFO 2026-06-03 20:15:03 SinglePassSamProgram Processed 165,000,000 records. Elapsed time: 00:02:08s. Time for last 1,000,000: 0s. Last read position: chr3:195,783,666
INFO 2026-06-03 20:15:04 SinglePassSamProgram Processed 166,000,000 records. Elapsed time: 00:02:09s. Time for last 1,000,000: 0s. Last read position: chr3:195,789,061
INFO 2026-06-03 20:15:05 SinglePassSamProgram Processed 167,000,000 records. Elapsed time: 00:02:09s. Time for last 1,000,000: 0s. Last read position: chr4:677,894
INFO 2026-06-03 20:15:05 SinglePassSamProgram Processed 168,000,000 records. Elapsed time: 00:02:10s. Time for last 1,000,000: 0s. Last read position: chr4:1,731,171
INFO 2026-06-03 20:15:06 SinglePassSamProgram Processed 169,000,000 records. Elapsed time: 00:02:11s. Time for last 1,000,000: 0s. Last read position: chr4:3,217,935
INFO 2026-06-03 20:15:07 SinglePassSamProgram Processed 170,000,000 records. Elapsed time: 00:02:12s. Time for last 1,000,000: 0s. Last read position: chr4:7,868,626
INFO 2026-06-03 20:15:08 SinglePassSamProgram Processed 171,000,000 records. Elapsed time: 00:02:12s. Time for last 1,000,000: 0s. Last read position: chr4:23,828,462
INFO 2026-06-03 20:15:08 SinglePassSamProgram Processed 172,000,000 records. Elapsed time: 00:02:13s. Time for last 1,000,000: 0s. Last read position: chr4:25,666,213
INFO 2026-06-03 20:15:09 SinglePassSamProgram Processed 173,000,000 records. Elapsed time: 00:02:14s. Time for last 1,000,000: 0s. Last read position: chr4:25,674,320
INFO 2026-06-03 20:15:10 SinglePassSamProgram Processed 174,000,000 records. Elapsed time: 00:02:15s. Time for last 1,000,000: 0s. Last read position: chr4:25,678,599
INFO 2026-06-03 20:15:10 SinglePassSamProgram Processed 175,000,000 records. Elapsed time: 00:02:15s. Time for last 1,000,000: 0s. Last read position: chr4:40,219,287
INFO 2026-06-03 20:15:11 SinglePassSamProgram Processed 176,000,000 records. Elapsed time: 00:02:16s. Time for last 1,000,000: 0s. Last read position: chr4:48,885,513
INFO 2026-06-03 20:15:12 SinglePassSamProgram Processed 177,000,000 records. Elapsed time: 00:02:17s. Time for last 1,000,000: 0s. Last read position: chr4:57,031,322
INFO 2026-06-03 20:15:13 SinglePassSamProgram Processed 178,000,000 records. Elapsed time: 00:02:18s. Time for last 1,000,000: 0s. Last read position: chr4:75,013,116
INFO 2026-06-03 20:15:13 SinglePassSamProgram Processed 179,000,000 records. Elapsed time: 00:02:18s. Time for last 1,000,000: 0s. Last read position: chr4:82,827,513
INFO 2026-06-03 20:15:14 SinglePassSamProgram Processed 180,000,000 records. Elapsed time: 00:02:19s. Time for last 1,000,000: 0s. Last read position: chr4:88,750,285
INFO 2026-06-03 20:15:15 SinglePassSamProgram Processed 181,000,000 records. Elapsed time: 00:02:20s. Time for last 1,000,000: 0s. Last read position: chr4:108,824,214
INFO 2026-06-03 20:15:16 SinglePassSamProgram Processed 182,000,000 records. Elapsed time: 00:02:21s. Time for last 1,000,000: 0s. Last read position: chr4:122,343,458
INFO 2026-06-03 20:15:17 SinglePassSamProgram Processed 183,000,000 records. Elapsed time: 00:02:21s. Time for last 1,000,000: 0s. Last read position: chr4:143,438,342
INFO 2026-06-03 20:15:17 SinglePassSamProgram Processed 184,000,000 records. Elapsed time: 00:02:22s. Time for last 1,000,000: 0s. Last read position: chr4:152,976,595
INFO 2026-06-03 20:15:18 SinglePassSamProgram Processed 185,000,000 records. Elapsed time: 00:02:23s. Time for last 1,000,000: 0s. Last read position: chr4:168,878,057
INFO 2026-06-03 20:15:19 SinglePassSamProgram Processed 186,000,000 records. Elapsed time: 00:02:24s. Time for last 1,000,000: 0s. Last read position: chr4:185,646,712
INFO 2026-06-03 20:15:20 SinglePassSamProgram Processed 187,000,000 records. Elapsed time: 00:02:24s. Time for last 1,000,000: 0s. Last read position: chr5:1,474,620
INFO 2026-06-03 20:15:20 SinglePassSamProgram Processed 188,000,000 records. Elapsed time: 00:02:25s. Time for last 1,000,000: 0s. Last read position: chr5:14,286,987
INFO 2026-06-03 20:15:21 SinglePassSamProgram Processed 189,000,000 records. Elapsed time: 00:02:26s. Time for last 1,000,000: 0s. Last read position: chr5:14,498,101
INFO 2026-06-03 20:15:22 SinglePassSamProgram Processed 190,000,000 records. Elapsed time: 00:02:27s. Time for last 1,000,000: 0s. Last read position: chr5:36,271,293
INFO 2026-06-03 20:15:23 SinglePassSamProgram Processed 191,000,000 records. Elapsed time: 00:02:27s. Time for last 1,000,000: 0s. Last read position: chr5:50,794,878
INFO 2026-06-03 20:15:23 SinglePassSamProgram Processed 192,000,000 records. Elapsed time: 00:02:28s. Time for last 1,000,000: 0s. Last read position: chr5:64,788,898
INFO 2026-06-03 20:15:24 SinglePassSamProgram Processed 193,000,000 records. Elapsed time: 00:02:29s. Time for last 1,000,000: 0s. Last read position: chr5:69,567,102
INFO 2026-06-03 20:15:25 SinglePassSamProgram Processed 194,000,000 records. Elapsed time: 00:02:30s. Time for last 1,000,000: 0s. Last read position: chr5:73,857,696
INFO 2026-06-03 20:15:26 SinglePassSamProgram Processed 195,000,000 records. Elapsed time: 00:02:31s. Time for last 1,000,000: 0s. Last read position: chr5:82,822,907
INFO 2026-06-03 20:15:26 SinglePassSamProgram Processed 196,000,000 records. Elapsed time: 00:02:31s. Time for last 1,000,000: 0s. Last read position: chr5:94,050,809
INFO 2026-06-03 20:15:27 SinglePassSamProgram Processed 197,000,000 records. Elapsed time: 00:02:32s. Time for last 1,000,000: 0s. Last read position: chr5:109,337,242
INFO 2026-06-03 20:15:28 SinglePassSamProgram Processed 198,000,000 records. Elapsed time: 00:02:33s. Time for last 1,000,000: 0s. Last read position: chr5:126,561,096
INFO 2026-06-03 20:15:29 SinglePassSamProgram Processed 199,000,000 records. Elapsed time: 00:02:34s. Time for last 1,000,000: 0s. Last read position: chr5:134,200,478
INFO 2026-06-03 20:15:29 SinglePassSamProgram Processed 200,000,000 records. Elapsed time: 00:02:34s. Time for last 1,000,000: 0s. Last read position: chr5:138,557,890
INFO 2026-06-03 20:15:30 SinglePassSamProgram Processed 201,000,000 records. Elapsed time: 00:02:35s. Time for last 1,000,000: 0s. Last read position: chr5:140,542,180
INFO 2026-06-03 20:15:31 SinglePassSamProgram Processed 202,000,000 records. Elapsed time: 00:02:36s. Time for last 1,000,000: 0s. Last read position: chr5:141,209,808
INFO 2026-06-03 20:15:32 SinglePassSamProgram Processed 203,000,000 records. Elapsed time: 00:02:36s. Time for last 1,000,000: 0s. Last read position: chr5:141,621,467
INFO 2026-06-03 20:15:32 SinglePassSamProgram Processed 204,000,000 records. Elapsed time: 00:02:37s. Time for last 1,000,000: 0s. Last read position: chr5:147,399,197
INFO 2026-06-03 20:15:33 SinglePassSamProgram Processed 205,000,000 records. Elapsed time: 00:02:38s. Time for last 1,000,000: 0s. Last read position: chr5:150,135,719
INFO 2026-06-03 20:15:34 SinglePassSamProgram Processed 206,000,000 records. Elapsed time: 00:02:39s. Time for last 1,000,000: 0s. Last read position: chr5:150,402,611
INFO 2026-06-03 20:15:35 SinglePassSamProgram Processed 207,000,000 records. Elapsed time: 00:02:40s. Time for last 1,000,000: 0s. Last read position: chr5:150,405,162
INFO 2026-06-03 20:15:35 SinglePassSamProgram Processed 208,000,000 records. Elapsed time: 00:02:40s. Time for last 1,000,000: 0s. Last read position: chr5:150,446,801
INFO 2026-06-03 20:15:36 SinglePassSamProgram Processed 209,000,000 records. Elapsed time: 00:02:41s. Time for last 1,000,000: 0s. Last read position: chr5:151,799,224
INFO 2026-06-03 20:15:37 SinglePassSamProgram Processed 210,000,000 records. Elapsed time: 00:02:42s. Time for last 1,000,000: 0s. Last read position: chr5:160,259,470
INFO 2026-06-03 20:15:38 SinglePassSamProgram Processed 211,000,000 records. Elapsed time: 00:02:43s. Time for last 1,000,000: 0s. Last read position: chr5:171,400,197
INFO 2026-06-03 20:15:38 SinglePassSamProgram Processed 212,000,000 records. Elapsed time: 00:02:43s. Time for last 1,000,000: 0s. Last read position: chr5:176,905,295
INFO 2026-06-03 20:15:39 SinglePassSamProgram Processed 213,000,000 records. Elapsed time: 00:02:44s. Time for last 1,000,000: 0s. Last read position: chr5:178,206,746
INFO 2026-06-03 20:15:40 SinglePassSamProgram Processed 214,000,000 records. Elapsed time: 00:02:45s. Time for last 1,000,000: 0s. Last read position: chr5:179,820,958
INFO 2026-06-03 20:15:41 SinglePassSamProgram Processed 215,000,000 records. Elapsed time: 00:02:46s. Time for last 1,000,000: 0s. Last read position: chr5:179,833,140
INFO 2026-06-03 20:15:41 SinglePassSamProgram Processed 216,000,000 records. Elapsed time: 00:02:46s. Time for last 1,000,000: 0s. Last read position: chr5:181,224,419
INFO 2026-06-03 20:15:42 SinglePassSamProgram Processed 217,000,000 records. Elapsed time: 00:02:47s. Time for last 1,000,000: 0s. Last read position: chr6:7,229,140
INFO 2026-06-03 20:15:43 SinglePassSamProgram Processed 218,000,000 records. Elapsed time: 00:02:48s. Time for last 1,000,000: 0s. Last read position: chr6:11,190,892
INFO 2026-06-03 20:15:44 SinglePassSamProgram Processed 219,000,000 records. Elapsed time: 00:02:49s. Time for last 1,000,000: 0s. Last read position: chr6:24,718,578
INFO 2026-06-03 20:15:44 SinglePassSamProgram Processed 220,000,000 records. Elapsed time: 00:02:49s. Time for last 1,000,000: 0s. Last read position: chr6:29,889,352
INFO 2026-06-03 20:15:45 SinglePassSamProgram Processed 221,000,000 records. Elapsed time: 00:02:50s. Time for last 1,000,000: 0s. Last read position: chr6:30,700,405
INFO 2026-06-03 20:15:46 SinglePassSamProgram Processed 222,000,000 records. Elapsed time: 00:02:51s. Time for last 1,000,000: 0s. Last read position: chr6:31,271,602
INFO 2026-06-03 20:15:47 SinglePassSamProgram Processed 223,000,000 records. Elapsed time: 00:02:51s. Time for last 1,000,000: 0s. Last read position: chr6:31,644,170
INFO 2026-06-03 20:15:47 SinglePassSamProgram Processed 224,000,000 records. Elapsed time: 00:02:52s. Time for last 1,000,000: 0s. Last read position: chr6:31,863,709
INFO 2026-06-03 20:15:48 SinglePassSamProgram Processed 225,000,000 records. Elapsed time: 00:02:53s. Time for last 1,000,000: 0s. Last read position: chr6:31,982,121
INFO 2026-06-03 20:15:49 SinglePassSamProgram Processed 226,000,000 records. Elapsed time: 00:02:54s. Time for last 1,000,000: 0s. Last read position: chr6:32,027,400
INFO 2026-06-03 20:15:49 SinglePassSamProgram Processed 227,000,000 records. Elapsed time: 00:02:54s. Time for last 1,000,000: 0s. Last read position: chr6:32,517,701
INFO 2026-06-03 20:15:50 SinglePassSamProgram Processed 228,000,000 records. Elapsed time: 00:02:55s. Time for last 1,000,000: 0s. Last read position: chr6:32,976,095
INFO 2026-06-03 20:15:51 SinglePassSamProgram Processed 229,000,000 records. Elapsed time: 00:02:56s. Time for last 1,000,000: 0s. Last read position: chr6:33,313,354
INFO 2026-06-03 20:15:52 SinglePassSamProgram Processed 230,000,000 records. Elapsed time: 00:02:57s. Time for last 1,000,000: 0s. Last read position: chr6:34,773,445
INFO 2026-06-03 20:15:52 SinglePassSamProgram Processed 231,000,000 records. Elapsed time: 00:02:57s. Time for last 1,000,000: 0s. Last read position: chr6:37,174,029
INFO 2026-06-03 20:15:53 SinglePassSamProgram Processed 232,000,000 records. Elapsed time: 00:02:58s. Time for last 1,000,000: 0s. Last read position: chr6:42,650,298
INFO 2026-06-03 20:15:54 SinglePassSamProgram Processed 233,000,000 records. Elapsed time: 00:02:59s. Time for last 1,000,000: 0s. Last read position: chr6:43,622,046
INFO 2026-06-03 20:15:55 SinglePassSamProgram Processed 234,000,000 records. Elapsed time: 00:03:00s. Time for last 1,000,000: 0s. Last read position: chr6:46,871,868
INFO 2026-06-03 20:15:55 SinglePassSamProgram Processed 235,000,000 records. Elapsed time: 00:03:00s. Time for last 1,000,000: 0s. Last read position: chr6:56,639,518
INFO 2026-06-03 20:15:56 SinglePassSamProgram Processed 236,000,000 records. Elapsed time: 00:03:01s. Time for last 1,000,000: 0s. Last read position: chr6:75,237,896
INFO 2026-06-03 20:15:57 SinglePassSamProgram Processed 237,000,000 records. Elapsed time: 00:03:02s. Time for last 1,000,000: 0s. Last read position: chr6:85,619,314
INFO 2026-06-03 20:15:58 SinglePassSamProgram Processed 238,000,000 records. Elapsed time: 00:03:03s. Time for last 1,000,000: 0s. Last read position: chr6:100,679,647
INFO 2026-06-03 20:15:58 SinglePassSamProgram Processed 239,000,000 records. Elapsed time: 00:03:03s. Time for last 1,000,000: 0s. Last read position: chr6:111,387,765
INFO 2026-06-03 20:15:59 SinglePassSamProgram Processed 240,000,000 records. Elapsed time: 00:03:04s. Time for last 1,000,000: 0s. Last read position: chr6:122,432,016
INFO 2026-06-03 20:16:00 SinglePassSamProgram Processed 241,000,000 records. Elapsed time: 00:03:05s. Time for last 1,000,000: 0s. Last read position: chr6:134,172,731
INFO 2026-06-03 20:16:01 SinglePassSamProgram Processed 242,000,000 records. Elapsed time: 00:03:06s. Time for last 1,000,000: 0s. Last read position: chr6:139,374,431
INFO 2026-06-03 20:16:01 SinglePassSamProgram Processed 243,000,000 records. Elapsed time: 00:03:06s. Time for last 1,000,000: 0s. Last read position: chr6:150,831,146
INFO 2026-06-03 20:16:02 SinglePassSamProgram Processed 244,000,000 records. Elapsed time: 00:03:07s. Time for last 1,000,000: 0s. Last read position: chr6:153,282,412
INFO 2026-06-03 20:16:03 SinglePassSamProgram Processed 245,000,000 records. Elapsed time: 00:03:08s. Time for last 1,000,000: 0s. Last read position: chr6:158,769,335
INFO 2026-06-03 20:16:04 SinglePassSamProgram Processed 246,000,000 records. Elapsed time: 00:03:09s. Time for last 1,000,000: 0s. Last read position: chr6:159,684,976
INFO 2026-06-03 20:16:04 SinglePassSamProgram Processed 247,000,000 records. Elapsed time: 00:03:09s. Time for last 1,000,000: 0s. Last read position: chr6:166,320,148
INFO 2026-06-03 20:16:05 SinglePassSamProgram Processed 248,000,000 records. Elapsed time: 00:03:10s. Time for last 1,000,000: 0s. Last read position: chr7:193,217
INFO 2026-06-03 20:16:06 SinglePassSamProgram Processed 249,000,000 records. Elapsed time: 00:03:11s. Time for last 1,000,000: 0s. Last read position: chr7:2,632,091
INFO 2026-06-03 20:16:07 SinglePassSamProgram Processed 250,000,000 records. Elapsed time: 00:03:12s. Time for last 1,000,000: 0s. Last read position: chr7:5,528,019
INFO 2026-06-03 20:16:07 SinglePassSamProgram Processed 251,000,000 records. Elapsed time: 00:03:12s. Time for last 1,000,000: 0s. Last read position: chr7:6,469,750
INFO 2026-06-03 20:16:08 SinglePassSamProgram Processed 252,000,000 records. Elapsed time: 00:03:13s. Time for last 1,000,000: 0s. Last read position: chr7:23,260,624
INFO 2026-06-03 20:16:09 SinglePassSamProgram Processed 253,000,000 records. Elapsed time: 00:03:14s. Time for last 1,000,000: 0s. Last read position: chr7:32,974,635
INFO 2026-06-03 20:16:10 SinglePassSamProgram Processed 254,000,000 records. Elapsed time: 00:03:15s. Time for last 1,000,000: 0s. Last read position: chr7:44,082,327
INFO 2026-06-03 20:16:11 SinglePassSamProgram Processed 255,000,000 records. Elapsed time: 00:03:15s. Time for last 1,000,000: 0s. Last read position: chr7:45,083,647
INFO 2026-06-03 20:16:11 SinglePassSamProgram Processed 256,000,000 records. Elapsed time: 00:03:16s. Time for last 1,000,000: 0s. Last read position: chr7:56,064,320
INFO 2026-06-03 20:16:12 SinglePassSamProgram Processed 257,000,000 records. Elapsed time: 00:03:17s. Time for last 1,000,000: 0s. Last read position: chr7:72,948,727
INFO 2026-06-03 20:16:13 SinglePassSamProgram Processed 258,000,000 records. Elapsed time: 00:03:18s. Time for last 1,000,000: 0s. Last read position: chr7:74,519,548
INFO 2026-06-03 20:16:14 SinglePassSamProgram Processed 259,000,000 records. Elapsed time: 00:03:18s. Time for last 1,000,000: 0s. Last read position: chr7:75,548,991
INFO 2026-06-03 20:16:14 SinglePassSamProgram Processed 260,000,000 records. Elapsed time: 00:03:19s. Time for last 1,000,000: 0s. Last read position: chr7:77,059,322
INFO 2026-06-03 20:16:15 SinglePassSamProgram Processed 261,000,000 records. Elapsed time: 00:03:20s. Time for last 1,000,000: 0s. Last read position: chr7:92,294,892
INFO 2026-06-03 20:16:16 SinglePassSamProgram Processed 262,000,000 records. Elapsed time: 00:03:21s. Time for last 1,000,000: 0s. Last read position: chr7:94,552,409
INFO 2026-06-03 20:16:17 SinglePassSamProgram Processed 263,000,000 records. Elapsed time: 00:03:21s. Time for last 1,000,000: 0s. Last read position: chr7:99,425,607
INFO 2026-06-03 20:16:17 SinglePassSamProgram Processed 264,000,000 records. Elapsed time: 00:03:22s. Time for last 1,000,000: 0s. Last read position: chr7:100,607,984
INFO 2026-06-03 20:16:18 SinglePassSamProgram Processed 265,000,000 records. Elapsed time: 00:03:23s. Time for last 1,000,000: 0s. Last read position: chr7:101,212,905
INFO 2026-06-03 20:16:19 SinglePassSamProgram Processed 266,000,000 records. Elapsed time: 00:03:24s. Time for last 1,000,000: 0s. Last read position: chr7:105,112,991
INFO 2026-06-03 20:16:20 SinglePassSamProgram Processed 267,000,000 records. Elapsed time: 00:03:24s. Time for last 1,000,000: 0s. Last read position: chr7:112,456,953
INFO 2026-06-03 20:16:20 SinglePassSamProgram Processed 268,000,000 records. Elapsed time: 00:03:25s. Time for last 1,000,000: 0s. Last read position: chr7:127,704,928
INFO 2026-06-03 20:16:21 SinglePassSamProgram Processed 269,000,000 records. Elapsed time: 00:03:26s. Time for last 1,000,000: 0s. Last read position: chr7:130,127,426
INFO 2026-06-03 20:16:22 SinglePassSamProgram Processed 270,000,000 records. Elapsed time: 00:03:27s. Time for last 1,000,000: 0s. Last read position: chr7:135,685,429
INFO 2026-06-03 20:16:23 SinglePassSamProgram Processed 271,000,000 records. Elapsed time: 00:03:27s. Time for last 1,000,000: 0s. Last read position: chr7:139,829,334
INFO 2026-06-03 20:16:23 SinglePassSamProgram Processed 272,000,000 records. Elapsed time: 00:03:28s. Time for last 1,000,000: 0s. Last read position: chr7:144,157,594
INFO 2026-06-03 20:16:24 SinglePassSamProgram Processed 273,000,000 records. Elapsed time: 00:03:29s. Time for last 1,000,000: 0s. Last read position: chr7:149,474,534
INFO 2026-06-03 20:16:25 SinglePassSamProgram Processed 274,000,000 records. Elapsed time: 00:03:30s. Time for last 1,000,000: 0s. Last read position: chr7:151,064,231
INFO 2026-06-03 20:16:25 SinglePassSamProgram Processed 275,000,000 records. Elapsed time: 00:03:30s. Time for last 1,000,000: 0s. Last read position: chr7:152,162,523
INFO 2026-06-03 20:16:26 SinglePassSamProgram Processed 276,000,000 records. Elapsed time: 00:03:31s. Time for last 1,000,000: 0s. Last read position: chr8:6,501,326
INFO 2026-06-03 20:16:27 SinglePassSamProgram Processed 277,000,000 records. Elapsed time: 00:03:32s. Time for last 1,000,000: 0s. Last read position: chr8:16,168,515
INFO 2026-06-03 20:16:28 SinglePassSamProgram Processed 278,000,000 records. Elapsed time: 00:03:33s. Time for last 1,000,000: 0s. Last read position: chr8:18,071,307
INFO 2026-06-03 20:16:29 SinglePassSamProgram Processed 279,000,000 records. Elapsed time: 00:03:33s. Time for last 1,000,000: 0s. Last read position: chr8:22,619,235
INFO 2026-06-03 20:16:29 SinglePassSamProgram Processed 280,000,000 records. Elapsed time: 00:03:34s. Time for last 1,000,000: 0s. Last read position: chr8:25,292,029
INFO 2026-06-03 20:16:30 SinglePassSamProgram Processed 281,000,000 records. Elapsed time: 00:03:35s. Time for last 1,000,000: 0s. Last read position: chr8:28,555,847
INFO 2026-06-03 20:16:31 SinglePassSamProgram Processed 282,000,000 records. Elapsed time: 00:03:36s. Time for last 1,000,000: 0s. Last read position: chr8:37,797,484
INFO 2026-06-03 20:16:32 SinglePassSamProgram Processed 283,000,000 records. Elapsed time: 00:03:36s. Time for last 1,000,000: 0s. Last read position: chr8:39,023,213
INFO 2026-06-03 20:16:32 SinglePassSamProgram Processed 284,000,000 records. Elapsed time: 00:03:37s. Time for last 1,000,000: 0s. Last read position: chr8:47,817,485
INFO 2026-06-03 20:16:33 SinglePassSamProgram Processed 285,000,000 records. Elapsed time: 00:03:38s. Time for last 1,000,000: 0s. Last read position: chr8:61,518,104
INFO 2026-06-03 20:16:34 SinglePassSamProgram Processed 286,000,000 records. Elapsed time: 00:03:39s. Time for last 1,000,000: 0s. Last read position: chr8:70,121,303
INFO 2026-06-03 20:16:35 SinglePassSamProgram Processed 287,000,000 records. Elapsed time: 00:03:39s. Time for last 1,000,000: 0s. Last read position: chr8:89,953,584
INFO 2026-06-03 20:16:35 SinglePassSamProgram Processed 288,000,000 records. Elapsed time: 00:03:40s. Time for last 1,000,000: 0s. Last read position: chr8:100,151,822
INFO 2026-06-03 20:16:36 SinglePassSamProgram Processed 289,000,000 records. Elapsed time: 00:03:41s. Time for last 1,000,000: 0s. Last read position: chr8:103,420,983
INFO 2026-06-03 20:16:37 SinglePassSamProgram Processed 290,000,000 records. Elapsed time: 00:03:42s. Time for last 1,000,000: 0s. Last read position: chr8:123,207,496
INFO 2026-06-03 20:16:38 SinglePassSamProgram Processed 291,000,000 records. Elapsed time: 00:03:43s. Time for last 1,000,000: 0s. Last read position: chr8:133,284,251
INFO 2026-06-03 20:16:38 SinglePassSamProgram Processed 292,000,000 records. Elapsed time: 00:03:43s. Time for last 1,000,000: 0s. Last read position: chr8:143,581,229
INFO 2026-06-03 20:16:39 SinglePassSamProgram Processed 293,000,000 records. Elapsed time: 00:03:44s. Time for last 1,000,000: 0s. Last read position: chr8:143,858,522
INFO 2026-06-03 20:16:40 SinglePassSamProgram Processed 294,000,000 records. Elapsed time: 00:03:45s. Time for last 1,000,000: 0s. Last read position: chr8:143,861,460
INFO 2026-06-03 20:16:40 SinglePassSamProgram Processed 295,000,000 records. Elapsed time: 00:03:45s. Time for last 1,000,000: 0s. Last read position: chr8:143,863,878
INFO 2026-06-03 20:16:41 SinglePassSamProgram Processed 296,000,000 records. Elapsed time: 00:03:46s. Time for last 1,000,000: 0s. Last read position: chr8:143,866,991
INFO 2026-06-03 20:16:42 SinglePassSamProgram Processed 297,000,000 records. Elapsed time: 00:03:47s. Time for last 1,000,000: 0s. Last read position: chr8:143,923,557
INFO 2026-06-03 20:16:43 SinglePassSamProgram Processed 298,000,000 records. Elapsed time: 00:03:47s. Time for last 1,000,000: 0s. Last read position: chr8:144,095,901
INFO 2026-06-03 20:16:43 SinglePassSamProgram Processed 299,000,000 records. Elapsed time: 00:03:48s. Time for last 1,000,000: 0s. Last read position: chr8:144,528,781
INFO 2026-06-03 20:16:44 SinglePassSamProgram Processed 300,000,000 records. Elapsed time: 00:03:49s. Time for last 1,000,000: 0s. Last read position: chr9:9,442,175
INFO 2026-06-03 20:16:45 SinglePassSamProgram Processed 301,000,000 records. Elapsed time: 00:03:50s. Time for last 1,000,000: 0s. Last read position: chr9:33,120,519
INFO 2026-06-03 20:16:46 SinglePassSamProgram Processed 302,000,000 records. Elapsed time: 00:03:51s. Time for last 1,000,000: 0s. Last read position: chr9:35,399,161
INFO 2026-06-03 20:16:46 SinglePassSamProgram Processed 303,000,000 records. Elapsed time: 00:03:51s. Time for last 1,000,000: 0s. Last read position: chr9:40,679,767
INFO 2026-06-03 20:16:47 SinglePassSamProgram Processed 304,000,000 records. Elapsed time: 00:03:52s. Time for last 1,000,000: 0s. Last read position: chr9:84,723,625
INFO 2026-06-03 20:16:48 SinglePassSamProgram Processed 305,000,000 records. Elapsed time: 00:03:53s. Time for last 1,000,000: 0s. Last read position: chr9:94,415,243
INFO 2026-06-03 20:16:49 SinglePassSamProgram Processed 306,000,000 records. Elapsed time: 00:03:54s. Time for last 1,000,000: 0s. Last read position: chr9:107,487,601
INFO 2026-06-03 20:16:49 SinglePassSamProgram Processed 307,000,000 records. Elapsed time: 00:03:54s. Time for last 1,000,000: 0s. Last read position: chr9:114,341,668
INFO 2026-06-03 20:16:50 SinglePassSamProgram Processed 308,000,000 records. Elapsed time: 00:03:55s. Time for last 1,000,000: 0s. Last read position: chr9:121,699,309
INFO 2026-06-03 20:16:51 SinglePassSamProgram Processed 309,000,000 records. Elapsed time: 00:03:56s. Time for last 1,000,000: 0s. Last read position: chr9:127,527,253
INFO 2026-06-03 20:16:52 SinglePassSamProgram Processed 310,000,000 records. Elapsed time: 00:03:57s. Time for last 1,000,000: 0s. Last read position: chr9:128,566,737
INFO 2026-06-03 20:16:52 SinglePassSamProgram Processed 311,000,000 records. Elapsed time: 00:03:57s. Time for last 1,000,000: 0s. Last read position: chr9:130,884,214
INFO 2026-06-03 20:16:53 SinglePassSamProgram Processed 312,000,000 records. Elapsed time: 00:03:58s. Time for last 1,000,000: 0s. Last read position: chr9:133,414,686
INFO 2026-06-03 20:16:54 SinglePassSamProgram Processed 313,000,000 records. Elapsed time: 00:03:59s. Time for last 1,000,000: 0s. Last read position: chr9:136,459,151
INFO 2026-06-03 20:16:55 SinglePassSamProgram Processed 314,000,000 records. Elapsed time: 00:04:00s. Time for last 1,000,000: 0s. Last read position: chr9:137,101,500
INFO 2026-06-03 20:16:55 SinglePassSamProgram Processed 315,000,000 records. Elapsed time: 00:04:00s. Time for last 1,000,000: 0s. Last read position: chr10:3,147,569
INFO 2026-06-03 20:16:56 SinglePassSamProgram Processed 316,000,000 records. Elapsed time: 00:04:01s. Time for last 1,000,000: 0s. Last read position: chr10:4,968,872
INFO 2026-06-03 20:16:57 SinglePassSamProgram Processed 317,000,000 records. Elapsed time: 00:04:02s. Time for last 1,000,000: 0s. Last read position: chr10:4,990,017
INFO 2026-06-03 20:16:58 SinglePassSamProgram Processed 318,000,000 records. Elapsed time: 00:04:03s. Time for last 1,000,000: 0s. Last read position: chr10:5,001,533
INFO 2026-06-03 20:16:58 SinglePassSamProgram Processed 319,000,000 records. Elapsed time: 00:04:03s. Time for last 1,000,000: 0s. Last read position: chr10:10,803,346
INFO 2026-06-03 20:16:59 SinglePassSamProgram Processed 320,000,000 records. Elapsed time: 00:04:04s. Time for last 1,000,000: 0s. Last read position: chr10:22,326,892
INFO 2026-06-03 20:17:00 SinglePassSamProgram Processed 321,000,000 records. Elapsed time: 00:04:05s. Time for last 1,000,000: 0s. Last read position: chr10:30,850,305
INFO 2026-06-03 20:17:01 SinglePassSamProgram Processed 322,000,000 records. Elapsed time: 00:04:06s. Time for last 1,000,000: 0s. Last read position: chr10:32,932,583
INFO 2026-06-03 20:17:02 SinglePassSamProgram Processed 323,000,000 records. Elapsed time: 00:04:06s. Time for last 1,000,000: 0s. Last read position: chr10:46,009,520
INFO 2026-06-03 20:17:02 SinglePassSamProgram Processed 324,000,000 records. Elapsed time: 00:04:07s. Time for last 1,000,000: 0s. Last read position: chr10:50,343,805
INFO 2026-06-03 20:17:03 SinglePassSamProgram Processed 325,000,000 records. Elapsed time: 00:04:08s. Time for last 1,000,000: 0s. Last read position: chr10:68,487,139
INFO 2026-06-03 20:17:04 SinglePassSamProgram Processed 326,000,000 records. Elapsed time: 00:04:09s. Time for last 1,000,000: 0s. Last read position: chr10:72,161,549
INFO 2026-06-03 20:17:05 SinglePassSamProgram Processed 327,000,000 records. Elapsed time: 00:04:09s. Time for last 1,000,000: 0s. Last read position: chr10:74,072,800
INFO 2026-06-03 20:17:05 SinglePassSamProgram Processed 328,000,000 records. Elapsed time: 00:04:10s. Time for last 1,000,000: 0s. Last read position: chr10:79,847,013
INFO 2026-06-03 20:17:06 SinglePassSamProgram Processed 329,000,000 records. Elapsed time: 00:04:11s. Time for last 1,000,000: 0s. Last read position: chr10:88,938,134
INFO 2026-06-03 20:17:07 SinglePassSamProgram Processed 330,000,000 records. Elapsed time: 00:04:12s. Time for last 1,000,000: 0s. Last read position: chr10:93,387,869
INFO 2026-06-03 20:17:08 SinglePassSamProgram Processed 331,000,000 records. Elapsed time: 00:04:12s. Time for last 1,000,000: 0s. Last read position: chr10:97,455,895
INFO 2026-06-03 20:17:08 SinglePassSamProgram Processed 332,000,000 records. Elapsed time: 00:04:13s. Time for last 1,000,000: 0s. Last read position: chr10:101,957,665
INFO 2026-06-03 20:17:09 SinglePassSamProgram Processed 333,000,000 records. Elapsed time: 00:04:14s. Time for last 1,000,000: 0s. Last read position: chr10:103,602,222
INFO 2026-06-03 20:17:10 SinglePassSamProgram Processed 334,000,000 records. Elapsed time: 00:04:15s. Time for last 1,000,000: 0s. Last read position: chr10:114,830,885
INFO 2026-06-03 20:17:11 SinglePassSamProgram Processed 335,000,000 records. Elapsed time: 00:04:16s. Time for last 1,000,000: 0s. Last read position: chr10:119,577,480
INFO 2026-06-03 20:17:11 SinglePassSamProgram Processed 336,000,000 records. Elapsed time: 00:04:16s. Time for last 1,000,000: 0s. Last read position: chr10:122,248,632
INFO 2026-06-03 20:17:12 SinglePassSamProgram Processed 337,000,000 records. Elapsed time: 00:04:17s. Time for last 1,000,000: 0s. Last read position: chr10:126,017,300
INFO 2026-06-03 20:17:13 SinglePassSamProgram Processed 338,000,000 records. Elapsed time: 00:04:18s. Time for last 1,000,000: 0s. Last read position: chr11:214,243
INFO 2026-06-03 20:17:14 SinglePassSamProgram Processed 339,000,000 records. Elapsed time: 00:04:19s. Time for last 1,000,000: 0s. Last read position: chr11:320,640
INFO 2026-06-03 20:17:14 SinglePassSamProgram Processed 340,000,000 records. Elapsed time: 00:04:19s. Time for last 1,000,000: 0s. Last read position: chr11:724,804
INFO 2026-06-03 20:17:15 SinglePassSamProgram Processed 341,000,000 records. Elapsed time: 00:04:20s. Time for last 1,000,000: 0s. Last read position: chr11:1,008,071
INFO 2026-06-03 20:17:16 SinglePassSamProgram Processed 342,000,000 records. Elapsed time: 00:04:21s. Time for last 1,000,000: 0s. Last read position: chr11:1,244,263
INFO 2026-06-03 20:17:17 SinglePassSamProgram Processed 343,000,000 records. Elapsed time: 00:04:21s. Time for last 1,000,000: 0s. Last read position: chr11:1,247,689
INFO 2026-06-03 20:17:17 SinglePassSamProgram Processed 344,000,000 records. Elapsed time: 00:04:22s. Time for last 1,000,000: 0s. Last read position: chr11:1,251,063
INFO 2026-06-03 20:17:18 SinglePassSamProgram Processed 345,000,000 records. Elapsed time: 00:04:23s. Time for last 1,000,000: 0s. Last read position: chr11:1,754,088
INFO 2026-06-03 20:17:19 SinglePassSamProgram Processed 346,000,000 records. Elapsed time: 00:04:24s. Time for last 1,000,000: 0s. Last read position: chr11:1,853,180
INFO 2026-06-03 20:17:19 SinglePassSamProgram Processed 347,000,000 records. Elapsed time: 00:04:24s. Time for last 1,000,000: 0s. Last read position: chr11:4,127,034
INFO 2026-06-03 20:17:20 SinglePassSamProgram Processed 348,000,000 records. Elapsed time: 00:04:25s. Time for last 1,000,000: 0s. Last read position: chr11:8,726,117
INFO 2026-06-03 20:17:21 SinglePassSamProgram Processed 349,000,000 records. Elapsed time: 00:04:26s. Time for last 1,000,000: 0s. Last read position: chr11:11,448,815
INFO 2026-06-03 20:17:22 SinglePassSamProgram Processed 350,000,000 records. Elapsed time: 00:04:27s. Time for last 1,000,000: 0s. Last read position: chr11:18,239,558
INFO 2026-06-03 20:17:22 SinglePassSamProgram Processed 351,000,000 records. Elapsed time: 00:04:27s. Time for last 1,000,000: 0s. Last read position: chr11:18,269,238
INFO 2026-06-03 20:17:23 SinglePassSamProgram Processed 352,000,000 records. Elapsed time: 00:04:28s. Time for last 1,000,000: 0s. Last read position: chr11:32,097,250
INFO 2026-06-03 20:17:24 SinglePassSamProgram Processed 353,000,000 records. Elapsed time: 00:04:29s. Time for last 1,000,000: 0s. Last read position: chr11:35,663,623
INFO 2026-06-03 20:17:25 SinglePassSamProgram Processed 354,000,000 records. Elapsed time: 00:04:30s. Time for last 1,000,000: 0s. Last read position: chr11:46,317,375
INFO 2026-06-03 20:17:25 SinglePassSamProgram Processed 355,000,000 records. Elapsed time: 00:04:30s. Time for last 1,000,000: 0s. Last read position: chr11:47,414,851
INFO 2026-06-03 20:17:26 SinglePassSamProgram Processed 356,000,000 records. Elapsed time: 00:04:31s. Time for last 1,000,000: 0s. Last read position: chr11:57,600,064
INFO 2026-06-03 20:17:27 SinglePassSamProgram Processed 357,000,000 records. Elapsed time: 00:04:32s. Time for last 1,000,000: 0s. Last read position: chr11:60,924,698
INFO 2026-06-03 20:17:28 SinglePassSamProgram Processed 358,000,000 records. Elapsed time: 00:04:33s. Time for last 1,000,000: 0s. Last read position: chr11:61,965,393
INFO 2026-06-03 20:17:28 SinglePassSamProgram Processed 359,000,000 records. Elapsed time: 00:04:33s. Time for last 1,000,000: 0s. Last read position: chr11:62,593,904
INFO 2026-06-03 20:17:29 SinglePassSamProgram Processed 360,000,000 records. Elapsed time: 00:04:34s. Time for last 1,000,000: 0s. Last read position: chr11:63,544,693
INFO 2026-06-03 20:17:30 SinglePassSamProgram Processed 361,000,000 records. Elapsed time: 00:04:35s. Time for last 1,000,000: 0s. Last read position: chr11:64,307,408
INFO 2026-06-03 20:17:31 SinglePassSamProgram Processed 362,000,000 records. Elapsed time: 00:04:36s. Time for last 1,000,000: 0s. Last read position: chr11:65,126,994
INFO 2026-06-03 20:17:31 SinglePassSamProgram Processed 363,000,000 records. Elapsed time: 00:04:36s. Time for last 1,000,000: 0s. Last read position: chr11:65,554,135
INFO 2026-06-03 20:17:32 SinglePassSamProgram Processed 364,000,000 records. Elapsed time: 00:04:37s. Time for last 1,000,000: 0s. Last read position: chr11:65,862,483
INFO 2026-06-03 20:17:33 SinglePassSamProgram Processed 365,000,000 records. Elapsed time: 00:04:38s. Time for last 1,000,000: 0s. Last read position: chr11:66,638,721
INFO 2026-06-03 20:17:34 SinglePassSamProgram Processed 366,000,000 records. Elapsed time: 00:04:39s. Time for last 1,000,000: 0s. Last read position: chr11:67,442,548
INFO 2026-06-03 20:17:34 SinglePassSamProgram Processed 367,000,000 records. Elapsed time: 00:04:39s. Time for last 1,000,000: 0s. Last read position: chr11:68,386,465
INFO 2026-06-03 20:17:35 SinglePassSamProgram Processed 368,000,000 records. Elapsed time: 00:04:40s. Time for last 1,000,000: 0s. Last read position: chr11:71,075,230
INFO 2026-06-03 20:17:36 SinglePassSamProgram Processed 369,000,000 records. Elapsed time: 00:04:41s. Time for last 1,000,000: 0s. Last read position: chr11:72,702,915
INFO 2026-06-03 20:17:37 SinglePassSamProgram Processed 370,000,000 records. Elapsed time: 00:04:42s. Time for last 1,000,000: 0s. Last read position: chr11:75,276,882
INFO 2026-06-03 20:17:38 SinglePassSamProgram Processed 371,000,000 records. Elapsed time: 00:04:42s. Time for last 1,000,000: 0s. Last read position: chr11:85,664,039
INFO 2026-06-03 20:17:38 SinglePassSamProgram Processed 372,000,000 records. Elapsed time: 00:04:43s. Time for last 1,000,000: 0s. Last read position: chr11:102,110,804
INFO 2026-06-03 20:17:39 SinglePassSamProgram Processed 373,000,000 records. Elapsed time: 00:04:44s. Time for last 1,000,000: 0s. Last read position: chr11:109,423,781
INFO 2026-06-03 20:17:40 SinglePassSamProgram Processed 374,000,000 records. Elapsed time: 00:04:45s. Time for last 1,000,000: 0s. Last read position: chr11:114,296,518
INFO 2026-06-03 20:17:41 SinglePassSamProgram Processed 375,000,000 records. Elapsed time: 00:04:45s. Time for last 1,000,000: 0s. Last read position: chr11:118,409,021
INFO 2026-06-03 20:17:41 SinglePassSamProgram Processed 376,000,000 records. Elapsed time: 00:04:46s. Time for last 1,000,000: 0s. Last read position: chr11:119,047,965
INFO 2026-06-03 20:17:42 SinglePassSamProgram Processed 377,000,000 records. Elapsed time: 00:04:47s. Time for last 1,000,000: 0s. Last read position: chr11:123,058,474
INFO 2026-06-03 20:17:43 SinglePassSamProgram Processed 378,000,000 records. Elapsed time: 00:04:48s. Time for last 1,000,000: 0s. Last read position: chr11:128,969,701
INFO 2026-06-03 20:17:44 SinglePassSamProgram Processed 379,000,000 records. Elapsed time: 00:04:48s. Time for last 1,000,000: 0s. Last read position: chr11:135,019,954
INFO 2026-06-03 20:17:44 SinglePassSamProgram Processed 380,000,000 records. Elapsed time: 00:04:49s. Time for last 1,000,000: 0s. Last read position: chr12:6,329,352
INFO 2026-06-03 20:17:45 SinglePassSamProgram Processed 381,000,000 records. Elapsed time: 00:04:50s. Time for last 1,000,000: 0s. Last read position: chr12:6,867,591
INFO 2026-06-03 20:17:46 SinglePassSamProgram Processed 382,000,000 records. Elapsed time: 00:04:51s. Time for last 1,000,000: 0s. Last read position: chr12:7,486,610
INFO 2026-06-03 20:17:47 SinglePassSamProgram Processed 383,000,000 records. Elapsed time: 00:04:52s. Time for last 1,000,000: 0s. Last read position: chr12:11,885,955
INFO 2026-06-03 20:17:47 SinglePassSamProgram Processed 384,000,000 records. Elapsed time: 00:04:52s. Time for last 1,000,000: 0s. Last read position: chr12:26,123,676
INFO 2026-06-03 20:17:48 SinglePassSamProgram Processed 385,000,000 records. Elapsed time: 00:04:53s. Time for last 1,000,000: 0s. Last read position: chr12:47,690,551
INFO 2026-06-03 20:17:49 SinglePassSamProgram Processed 386,000,000 records. Elapsed time: 00:04:54s. Time for last 1,000,000: 0s. Last read position: chr12:49,041,655
INFO 2026-06-03 20:17:50 SinglePassSamProgram Processed 387,000,000 records. Elapsed time: 00:04:55s. Time for last 1,000,000: 0s. Last read position: chr12:49,792,882
INFO 2026-06-03 20:17:50 SinglePassSamProgram Processed 388,000,000 records. Elapsed time: 00:04:55s. Time for last 1,000,000: 0s. Last read position: chr12:52,243,128
INFO 2026-06-03 20:17:51 SinglePassSamProgram Processed 389,000,000 records. Elapsed time: 00:04:56s. Time for last 1,000,000: 0s. Last read position: chr12:53,314,419
INFO 2026-06-03 20:17:52 SinglePassSamProgram Processed 390,000,000 records. Elapsed time: 00:04:57s. Time for last 1,000,000: 0s. Last read position: chr12:54,397,366
INFO 2026-06-03 20:17:53 SinglePassSamProgram Processed 391,000,000 records. Elapsed time: 00:04:58s. Time for last 1,000,000: 0s. Last read position: chr12:56,158,388
INFO 2026-06-03 20:17:53 SinglePassSamProgram Processed 392,000,000 records. Elapsed time: 00:04:58s. Time for last 1,000,000: 0s. Last read position: chr12:56,615,189
INFO 2026-06-03 20:17:54 SinglePassSamProgram Processed 393,000,000 records. Elapsed time: 00:04:59s. Time for last 1,000,000: 0s. Last read position: chr12:57,102,410
INFO 2026-06-03 20:17:55 SinglePassSamProgram Processed 394,000,000 records. Elapsed time: 00:05:00s. Time for last 1,000,000: 0s. Last read position: chr12:57,200,703
INFO 2026-06-03 20:17:56 SinglePassSamProgram Processed 395,000,000 records. Elapsed time: 00:05:01s. Time for last 1,000,000: 0s. Last read position: chr12:57,755,586
INFO 2026-06-03 20:17:56 SinglePassSamProgram Processed 396,000,000 records. Elapsed time: 00:05:01s. Time for last 1,000,000: 0s. Last read position: chr12:66,252,486
INFO 2026-06-03 20:17:57 SinglePassSamProgram Processed 397,000,000 records. Elapsed time: 00:05:02s. Time for last 1,000,000: 0s. Last read position: chr12:76,056,131
INFO 2026-06-03 20:17:58 SinglePassSamProgram Processed 398,000,000 records. Elapsed time: 00:05:03s. Time for last 1,000,000: 0s. Last read position: chr12:94,308,787
INFO 2026-06-03 20:17:59 SinglePassSamProgram Processed 399,000,000 records. Elapsed time: 00:05:04s. Time for last 1,000,000: 0s. Last read position: chr12:103,840,979
INFO 2026-06-03 20:17:59 SinglePassSamProgram Processed 400,000,000 records. Elapsed time: 00:05:04s. Time for last 1,000,000: 0s. Last read position: chr12:105,127,259
INFO 2026-06-03 20:18:00 SinglePassSamProgram Processed 401,000,000 records. Elapsed time: 00:05:05s. Time for last 1,000,000: 0s. Last read position: chr12:110,323,002
INFO 2026-06-03 20:18:01 SinglePassSamProgram Processed 402,000,000 records. Elapsed time: 00:05:06s. Time for last 1,000,000: 0s. Last read position: chr12:111,880,484
INFO 2026-06-03 20:18:02 SinglePassSamProgram Processed 403,000,000 records. Elapsed time: 00:05:07s. Time for last 1,000,000: 0s. Last read position: chr12:112,961,177
INFO 2026-06-03 20:18:02 SinglePassSamProgram Processed 404,000,000 records. Elapsed time: 00:05:07s. Time for last 1,000,000: 0s. Last read position: chr12:118,035,040
INFO 2026-06-03 20:18:03 SinglePassSamProgram Processed 405,000,000 records. Elapsed time: 00:05:08s. Time for last 1,000,000: 0s. Last read position: chr12:120,737,105
INFO 2026-06-03 20:18:04 SinglePassSamProgram Processed 406,000,000 records. Elapsed time: 00:05:09s. Time for last 1,000,000: 0s. Last read position: chr12:122,767,490
INFO 2026-06-03 20:18:05 SinglePassSamProgram Processed 407,000,000 records. Elapsed time: 00:05:10s. Time for last 1,000,000: 0s. Last read position: chr12:124,346,526
INFO 2026-06-03 20:18:06 SinglePassSamProgram Processed 408,000,000 records. Elapsed time: 00:05:10s. Time for last 1,000,000: 0s. Last read position: chr12:132,023,815
INFO 2026-06-03 20:18:06 SinglePassSamProgram Processed 409,000,000 records. Elapsed time: 00:05:11s. Time for last 1,000,000: 0s. Last read position: chr13:19,993,156
INFO 2026-06-03 20:18:07 SinglePassSamProgram Processed 410,000,000 records. Elapsed time: 00:05:12s. Time for last 1,000,000: 0s. Last read position: chr13:30,744,115
INFO 2026-06-03 20:18:08 SinglePassSamProgram Processed 411,000,000 records. Elapsed time: 00:05:13s. Time for last 1,000,000: 0s. Last read position: chr13:42,302,931
INFO 2026-06-03 20:18:09 SinglePassSamProgram Processed 412,000,000 records. Elapsed time: 00:05:14s. Time for last 1,000,000: 0s. Last read position: chr13:52,642,748
INFO 2026-06-03 20:18:09 SinglePassSamProgram Processed 413,000,000 records. Elapsed time: 00:05:14s. Time for last 1,000,000: 0s. Last read position: chr13:98,463,717
INFO 2026-06-03 20:18:10 SinglePassSamProgram Processed 414,000,000 records. Elapsed time: 00:05:15s. Time for last 1,000,000: 0s. Last read position: chr13:110,177,914
INFO 2026-06-03 20:18:11 SinglePassSamProgram Processed 415,000,000 records. Elapsed time: 00:05:16s. Time for last 1,000,000: 0s. Last read position: chr13:110,489,768
INFO 2026-06-03 20:18:12 SinglePassSamProgram Processed 416,000,000 records. Elapsed time: 00:05:17s. Time for last 1,000,000: 0s. Last read position: chr14:20,354,231
INFO 2026-06-03 20:18:12 SinglePassSamProgram Processed 417,000,000 records. Elapsed time: 00:05:17s. Time for last 1,000,000: 0s. Last read position: chr14:21,503,495
INFO 2026-06-03 20:18:13 SinglePassSamProgram Processed 418,000,000 records. Elapsed time: 00:05:18s. Time for last 1,000,000: 0s. Last read position: chr14:23,097,657
INFO 2026-06-03 20:18:14 SinglePassSamProgram Processed 419,000,000 records. Elapsed time: 00:05:19s. Time for last 1,000,000: 0s. Last read position: chr14:24,183,456
INFO 2026-06-03 20:18:15 SinglePassSamProgram Processed 420,000,000 records. Elapsed time: 00:05:20s. Time for last 1,000,000: 0s. Last read position: chr14:31,169,464
INFO 2026-06-03 20:18:15 SinglePassSamProgram Processed 421,000,000 records. Elapsed time: 00:05:20s. Time for last 1,000,000: 0s. Last read position: chr14:36,479,254
INFO 2026-06-03 20:18:16 SinglePassSamProgram Processed 422,000,000 records. Elapsed time: 00:05:21s. Time for last 1,000,000: 0s. Last read position: chr14:49,619,036
INFO 2026-06-03 20:18:17 SinglePassSamProgram Processed 423,000,000 records. Elapsed time: 00:05:22s. Time for last 1,000,000: 0s. Last read position: chr14:54,427,807
INFO 2026-06-03 20:18:18 SinglePassSamProgram Processed 424,000,000 records. Elapsed time: 00:05:23s. Time for last 1,000,000: 0s. Last read position: chr14:61,720,514
INFO 2026-06-03 20:18:18 SinglePassSamProgram Processed 425,000,000 records. Elapsed time: 00:05:23s. Time for last 1,000,000: 0s. Last read position: chr14:67,761,455
INFO 2026-06-03 20:18:19 SinglePassSamProgram Processed 426,000,000 records. Elapsed time: 00:05:24s. Time for last 1,000,000: 0s. Last read position: chr14:71,588,766
INFO 2026-06-03 20:18:20 SinglePassSamProgram Processed 427,000,000 records. Elapsed time: 00:05:25s. Time for last 1,000,000: 0s. Last read position: chr14:74,673,087
INFO 2026-06-03 20:18:21 SinglePassSamProgram Processed 428,000,000 records. Elapsed time: 00:05:26s. Time for last 1,000,000: 0s. Last read position: chr14:77,715,803
INFO 2026-06-03 20:18:21 SinglePassSamProgram Processed 429,000,000 records. Elapsed time: 00:05:26s. Time for last 1,000,000: 0s. Last read position: chr14:91,891,280
INFO 2026-06-03 20:18:22 SinglePassSamProgram Processed 430,000,000 records. Elapsed time: 00:05:27s. Time for last 1,000,000: 0s. Last read position: chr14:94,378,571
INFO 2026-06-03 20:18:23 SinglePassSamProgram Processed 431,000,000 records. Elapsed time: 00:05:28s. Time for last 1,000,000: 0s. Last read position: chr14:100,277,540
INFO 2026-06-03 20:18:24 SinglePassSamProgram Processed 432,000,000 records. Elapsed time: 00:05:29s. Time for last 1,000,000: 0s. Last read position: chr14:102,086,254
INFO 2026-06-03 20:18:24 SinglePassSamProgram Processed 433,000,000 records. Elapsed time: 00:05:29s. Time for last 1,000,000: 0s. Last read position: chr14:104,707,653
INFO 2026-06-03 20:18:25 SinglePassSamProgram Processed 434,000,000 records. Elapsed time: 00:05:30s. Time for last 1,000,000: 0s. Last read position: chr14:104,950,792
INFO 2026-06-03 20:18:26 SinglePassSamProgram Processed 435,000,000 records. Elapsed time: 00:05:31s. Time for last 1,000,000: 0s. Last read position: chr14:105,624,653
INFO 2026-06-03 20:18:27 SinglePassSamProgram Processed 436,000,000 records. Elapsed time: 00:05:32s. Time for last 1,000,000: 0s. Last read position: chr14:105,707,233
INFO 2026-06-03 20:18:27 SinglePassSamProgram Processed 437,000,000 records. Elapsed time: 00:05:32s. Time for last 1,000,000: 0s. Last read position: chr14:105,708,130
INFO 2026-06-03 20:18:28 SinglePassSamProgram Processed 438,000,000 records. Elapsed time: 00:05:33s. Time for last 1,000,000: 0s. Last read position: chr14:105,741,991
INFO 2026-06-03 20:18:29 SinglePassSamProgram Processed 439,000,000 records. Elapsed time: 00:05:34s. Time for last 1,000,000: 0s. Last read position: chr14:105,854,699
INFO 2026-06-03 20:18:30 SinglePassSamProgram Processed 440,000,000 records. Elapsed time: 00:05:35s. Time for last 1,000,000: 0s. Last read position: chr15:26,621,419
INFO 2026-06-03 20:18:30 SinglePassSamProgram Processed 441,000,000 records. Elapsed time: 00:05:35s. Time for last 1,000,000: 0s. Last read position: chr15:32,445,797
INFO 2026-06-03 20:18:31 SinglePassSamProgram Processed 442,000,000 records. Elapsed time: 00:05:36s. Time for last 1,000,000: 0s. Last read position: chr15:34,527,929
INFO 2026-06-03 20:18:32 SinglePassSamProgram Processed 443,000,000 records. Elapsed time: 00:05:37s. Time for last 1,000,000: 0s. Last read position: chr15:39,934,163
INFO 2026-06-03 20:18:33 SinglePassSamProgram Processed 444,000,000 records. Elapsed time: 00:05:38s. Time for last 1,000,000: 0s. Last read position: chr15:41,696,310
INFO 2026-06-03 20:18:33 SinglePassSamProgram Processed 445,000,000 records. Elapsed time: 00:05:38s. Time for last 1,000,000: 0s. Last read position: chr15:43,366,484
INFO 2026-06-03 20:18:34 SinglePassSamProgram Processed 446,000,000 records. Elapsed time: 00:05:39s. Time for last 1,000,000: 0s. Last read position: chr15:43,765,937
INFO 2026-06-03 20:18:35 SinglePassSamProgram Processed 447,000,000 records. Elapsed time: 00:05:40s. Time for last 1,000,000: 0s. Last read position: chr15:45,023,210
INFO 2026-06-03 20:18:36 SinglePassSamProgram Processed 448,000,000 records. Elapsed time: 00:05:41s. Time for last 1,000,000: 0s. Last read position: chr15:51,806,495
INFO 2026-06-03 20:18:36 SinglePassSamProgram Processed 449,000,000 records. Elapsed time: 00:05:41s. Time for last 1,000,000: 0s. Last read position: chr15:58,888,462
INFO 2026-06-03 20:18:37 SinglePassSamProgram Processed 450,000,000 records. Elapsed time: 00:05:42s. Time for last 1,000,000: 0s. Last read position: chr15:63,616,485
INFO 2026-06-03 20:18:38 SinglePassSamProgram Processed 451,000,000 records. Elapsed time: 00:05:43s. Time for last 1,000,000: 0s. Last read position: chr15:66,295,100
INFO 2026-06-03 20:18:39 SinglePassSamProgram Processed 452,000,000 records. Elapsed time: 00:05:44s. Time for last 1,000,000: 0s. Last read position: chr15:72,202,457
INFO 2026-06-03 20:18:39 SinglePassSamProgram Processed 453,000,000 records. Elapsed time: 00:05:44s. Time for last 1,000,000: 0s. Last read position: chr15:74,023,367
INFO 2026-06-03 20:18:40 SinglePassSamProgram Processed 454,000,000 records. Elapsed time: 00:05:45s. Time for last 1,000,000: 0s. Last read position: chr15:75,356,835
INFO 2026-06-03 20:18:41 SinglePassSamProgram Processed 455,000,000 records. Elapsed time: 00:05:46s. Time for last 1,000,000: 0s. Last read position: chr15:78,880,566
INFO 2026-06-03 20:18:42 SinglePassSamProgram Processed 456,000,000 records. Elapsed time: 00:05:47s. Time for last 1,000,000: 0s. Last read position: chr15:84,512,248
INFO 2026-06-03 20:18:42 SinglePassSamProgram Processed 457,000,000 records. Elapsed time: 00:05:47s. Time for last 1,000,000: 0s. Last read position: chr15:85,741,344
INFO 2026-06-03 20:18:43 SinglePassSamProgram Processed 458,000,000 records. Elapsed time: 00:05:48s. Time for last 1,000,000: 0s. Last read position: chr15:90,228,047
INFO 2026-06-03 20:18:44 SinglePassSamProgram Processed 459,000,000 records. Elapsed time: 00:05:49s. Time for last 1,000,000: 0s. Last read position: chr15:90,881,648
INFO 2026-06-03 20:18:45 SinglePassSamProgram Processed 460,000,000 records. Elapsed time: 00:05:50s. Time for last 1,000,000: 0s. Last read position: chr15:101,274,621
INFO 2026-06-03 20:18:45 SinglePassSamProgram Processed 461,000,000 records. Elapsed time: 00:05:50s. Time for last 1,000,000: 0s. Last read position: chr16:634,636
INFO 2026-06-03 20:18:46 SinglePassSamProgram Processed 462,000,000 records. Elapsed time: 00:05:51s. Time for last 1,000,000: 0s. Last read position: chr16:769,568
INFO 2026-06-03 20:18:47 SinglePassSamProgram Processed 463,000,000 records. Elapsed time: 00:05:52s. Time for last 1,000,000: 0s. Last read position: chr16:1,773,344
INFO 2026-06-03 20:18:48 SinglePassSamProgram Processed 464,000,000 records. Elapsed time: 00:05:53s. Time for last 1,000,000: 0s. Last read position: chr16:2,135,475
INFO 2026-06-03 20:18:48 SinglePassSamProgram Processed 465,000,000 records. Elapsed time: 00:05:53s. Time for last 1,000,000: 0s. Last read position: chr16:2,762,900
INFO 2026-06-03 20:18:49 SinglePassSamProgram Processed 466,000,000 records. Elapsed time: 00:05:54s. Time for last 1,000,000: 0s. Last read position: chr16:2,777,001
INFO 2026-06-03 20:18:50 SinglePassSamProgram Processed 467,000,000 records. Elapsed time: 00:05:55s. Time for last 1,000,000: 0s. Last read position: chr16:3,757,996
INFO 2026-06-03 20:18:51 SinglePassSamProgram Processed 468,000,000 records. Elapsed time: 00:05:56s. Time for last 1,000,000: 0s. Last read position: chr16:5,055,297
INFO 2026-06-03 20:18:51 SinglePassSamProgram Processed 469,000,000 records. Elapsed time: 00:05:56s. Time for last 1,000,000: 0s. Last read position: chr16:11,929,183
INFO 2026-06-03 20:18:52 SinglePassSamProgram Processed 470,000,000 records. Elapsed time: 00:05:57s. Time for last 1,000,000: 0s. Last read position: chr16:14,932,828
INFO 2026-06-03 20:18:53 SinglePassSamProgram Processed 471,000,000 records. Elapsed time: 00:05:58s. Time for last 1,000,000: 0s. Last read position: chr16:16,150,068
INFO 2026-06-03 20:18:54 SinglePassSamProgram Processed 472,000,000 records. Elapsed time: 00:05:59s. Time for last 1,000,000: 0s. Last read position: chr16:18,318,004
INFO 2026-06-03 20:18:54 SinglePassSamProgram Processed 473,000,000 records. Elapsed time: 00:05:59s. Time for last 1,000,000: 0s. Last read position: chr16:18,580,209
INFO 2026-06-03 20:18:55 SinglePassSamProgram Processed 474,000,000 records. Elapsed time: 00:06:00s. Time for last 1,000,000: 0s. Last read position: chr16:21,403,389
INFO 2026-06-03 20:18:56 SinglePassSamProgram Processed 475,000,000 records. Elapsed time: 00:06:01s. Time for last 1,000,000: 0s. Last read position: chr16:21,837,488
INFO 2026-06-03 20:18:56 SinglePassSamProgram Processed 476,000,000 records. Elapsed time: 00:06:01s. Time for last 1,000,000: 0s. Last read position: chr16:22,533,883
INFO 2026-06-03 20:18:57 SinglePassSamProgram Processed 477,000,000 records. Elapsed time: 00:06:02s. Time for last 1,000,000: 0s. Last read position: chr16:25,251,887
INFO 2026-06-03 20:18:58 SinglePassSamProgram Processed 478,000,000 records. Elapsed time: 00:06:03s. Time for last 1,000,000: 0s. Last read position: chr16:28,734,929
INFO 2026-06-03 20:18:59 SinglePassSamProgram Processed 479,000,000 records. Elapsed time: 00:06:04s. Time for last 1,000,000: 0s. Last read position: chr16:29,483,768
INFO 2026-06-03 20:18:59 SinglePassSamProgram Processed 480,000,000 records. Elapsed time: 00:06:04s. Time for last 1,000,000: 0s. Last read position: chr16:29,896,869
INFO 2026-06-03 20:19:00 SinglePassSamProgram Processed 481,000,000 records. Elapsed time: 00:06:05s. Time for last 1,000,000: 0s. Last read position: chr16:30,224,487
INFO 2026-06-03 20:19:01 SinglePassSamProgram Processed 482,000,000 records. Elapsed time: 00:06:06s. Time for last 1,000,000: 0s. Last read position: chr16:30,729,077
INFO 2026-06-03 20:19:02 SinglePassSamProgram Processed 483,000,000 records. Elapsed time: 00:06:07s. Time for last 1,000,000: 0s. Last read position: chr16:31,189,135
INFO 2026-06-03 20:19:02 SinglePassSamProgram Processed 484,000,000 records. Elapsed time: 00:06:07s. Time for last 1,000,000: 0s. Last read position: chr16:48,561,058
INFO 2026-06-03 20:19:03 SinglePassSamProgram Processed 485,000,000 records. Elapsed time: 00:06:08s. Time for last 1,000,000: 0s. Last read position: chr16:55,811,004
INFO 2026-06-03 20:19:04 SinglePassSamProgram Processed 486,000,000 records. Elapsed time: 00:06:09s. Time for last 1,000,000: 0s. Last read position: chr16:57,998,121
INFO 2026-06-03 20:19:05 SinglePassSamProgram Processed 487,000,000 records. Elapsed time: 00:06:10s. Time for last 1,000,000: 0s. Last read position: chr16:67,166,369
INFO 2026-06-03 20:19:05 SinglePassSamProgram Processed 488,000,000 records. Elapsed time: 00:06:10s. Time for last 1,000,000: 0s. Last read position: chr16:67,963,977
INFO 2026-06-03 20:19:06 SinglePassSamProgram Processed 489,000,000 records. Elapsed time: 00:06:11s. Time for last 1,000,000: 0s. Last read position: chr16:69,871,893
INFO 2026-06-03 20:19:07 SinglePassSamProgram Processed 490,000,000 records. Elapsed time: 00:06:12s. Time for last 1,000,000: 0s. Last read position: chr16:71,920,739
INFO 2026-06-03 20:19:08 SinglePassSamProgram Processed 491,000,000 records. Elapsed time: 00:06:13s. Time for last 1,000,000: 0s. Last read position: chr16:72,060,423
INFO 2026-06-03 20:19:08 SinglePassSamProgram Processed 492,000,000 records. Elapsed time: 00:06:13s. Time for last 1,000,000: 0s. Last read position: chr16:74,491,192
INFO 2026-06-03 20:19:09 SinglePassSamProgram Processed 493,000,000 records. Elapsed time: 00:06:14s. Time for last 1,000,000: 0s. Last read position: chr16:84,069,977
INFO 2026-06-03 20:19:10 SinglePassSamProgram Processed 494,000,000 records. Elapsed time: 00:06:15s. Time for last 1,000,000: 0s. Last read position: chr16:87,838,720
INFO 2026-06-03 20:19:11 SinglePassSamProgram Processed 495,000,000 records. Elapsed time: 00:06:16s. Time for last 1,000,000: 0s. Last read position: chr16:88,810,467
INFO 2026-06-03 20:19:11 SinglePassSamProgram Processed 496,000,000 records. Elapsed time: 00:06:16s. Time for last 1,000,000: 0s. Last read position: chr16:89,695,619
INFO 2026-06-03 20:19:12 SinglePassSamProgram Processed 497,000,000 records. Elapsed time: 00:06:17s. Time for last 1,000,000: 0s. Last read position: chr17:1,345,424
INFO 2026-06-03 20:19:13 SinglePassSamProgram Processed 498,000,000 records. Elapsed time: 00:06:18s. Time for last 1,000,000: 0s. Last read position: chr17:1,673,389
INFO 2026-06-03 20:19:14 SinglePassSamProgram Processed 499,000,000 records. Elapsed time: 00:06:19s. Time for last 1,000,000: 0s. Last read position: chr17:2,698,504
INFO 2026-06-03 20:19:14 SinglePassSamProgram Processed 500,000,000 records. Elapsed time: 00:06:19s. Time for last 1,000,000: 0s. Last read position: chr17:4,672,350
INFO 2026-06-03 20:19:15 SinglePassSamProgram Processed 501,000,000 records. Elapsed time: 00:06:20s. Time for last 1,000,000: 0s. Last read position: chr17:7,038,221
INFO 2026-06-03 20:19:16 SinglePassSamProgram Processed 502,000,000 records. Elapsed time: 00:06:21s. Time for last 1,000,000: 0s. Last read position: chr17:7,513,658
INFO 2026-06-03 20:19:17 SinglePassSamProgram Processed 503,000,000 records. Elapsed time: 00:06:22s. Time for last 1,000,000: 0s. Last read position: chr17:8,150,603
INFO 2026-06-03 20:19:17 SinglePassSamProgram Processed 504,000,000 records. Elapsed time: 00:06:22s. Time for last 1,000,000: 0s. Last read position: chr17:16,381,950
INFO 2026-06-03 20:19:18 SinglePassSamProgram Processed 505,000,000 records. Elapsed time: 00:06:23s. Time for last 1,000,000: 0s. Last read position: chr17:17,795,064
INFO 2026-06-03 20:19:19 SinglePassSamProgram Processed 506,000,000 records. Elapsed time: 00:06:24s. Time for last 1,000,000: 0s. Last read position: chr17:19,063,953
INFO 2026-06-03 20:19:20 SinglePassSamProgram Processed 507,000,000 records. Elapsed time: 00:06:25s. Time for last 1,000,000: 0s. Last read position: chr17:21,172,042
INFO 2026-06-03 20:19:20 SinglePassSamProgram Processed 508,000,000 records. Elapsed time: 00:06:25s. Time for last 1,000,000: 0s. Last read position: chr17:28,655,286
INFO 2026-06-03 20:19:21 SinglePassSamProgram Processed 509,000,000 records. Elapsed time: 00:06:26s. Time for last 1,000,000: 0s. Last read position: chr17:29,666,181
INFO 2026-06-03 20:19:22 SinglePassSamProgram Processed 510,000,000 records. Elapsed time: 00:06:27s. Time for last 1,000,000: 0s. Last read position: chr17:32,479,346
INFO 2026-06-03 20:19:23 SinglePassSamProgram Processed 511,000,000 records. Elapsed time: 00:06:28s. Time for last 1,000,000: 0s. Last read position: chr17:36,256,629
INFO 2026-06-03 20:19:23 SinglePassSamProgram Processed 512,000,000 records. Elapsed time: 00:06:28s. Time for last 1,000,000: 0s. Last read position: chr17:38,466,791
INFO 2026-06-03 20:19:24 SinglePassSamProgram Processed 513,000,000 records. Elapsed time: 00:06:29s. Time for last 1,000,000: 0s. Last read position: chr17:39,700,206
INFO 2026-06-03 20:19:25 SinglePassSamProgram Processed 514,000,000 records. Elapsed time: 00:06:30s. Time for last 1,000,000: 0s. Last read position: chr17:39,996,181
INFO 2026-06-03 20:19:26 SinglePassSamProgram Processed 515,000,000 records. Elapsed time: 00:06:31s. Time for last 1,000,000: 0s. Last read position: chr17:41,905,549
INFO 2026-06-03 20:19:26 SinglePassSamProgram Processed 516,000,000 records. Elapsed time: 00:06:31s. Time for last 1,000,000: 0s. Last read position: chr17:42,543,439
INFO 2026-06-03 20:19:27 SinglePassSamProgram Processed 517,000,000 records. Elapsed time: 00:06:32s. Time for last 1,000,000: 0s. Last read position: chr17:44,078,360
INFO 2026-06-03 20:19:28 SinglePassSamProgram Processed 518,000,000 records. Elapsed time: 00:06:33s. Time for last 1,000,000: 0s. Last read position: chr17:45,137,774
INFO 2026-06-03 20:19:29 SinglePassSamProgram Processed 519,000,000 records. Elapsed time: 00:06:34s. Time for last 1,000,000: 0s. Last read position: chr17:46,692,977
INFO 2026-06-03 20:19:29 SinglePassSamProgram Processed 520,000,000 records. Elapsed time: 00:06:34s. Time for last 1,000,000: 0s. Last read position: chr17:48,852,565
INFO 2026-06-03 20:19:30 SinglePassSamProgram Processed 521,000,000 records. Elapsed time: 00:06:35s. Time for last 1,000,000: 0s. Last read position: chr17:50,186,748
INFO 2026-06-03 20:19:31 SinglePassSamProgram Processed 522,000,000 records. Elapsed time: 00:06:36s. Time for last 1,000,000: 0s. Last read position: chr17:50,188,924
INFO 2026-06-03 20:19:32 SinglePassSamProgram Processed 523,000,000 records. Elapsed time: 00:06:37s. Time for last 1,000,000: 0s. Last read position: chr17:50,190,575
INFO 2026-06-03 20:19:33 SinglePassSamProgram Processed 524,000,000 records. Elapsed time: 00:06:37s. Time for last 1,000,000: 0s. Last read position: chr17:50,193,943
INFO 2026-06-03 20:19:33 SinglePassSamProgram Processed 525,000,000 records. Elapsed time: 00:06:38s. Time for last 1,000,000: 0s. Last read position: chr17:50,195,317
INFO 2026-06-03 20:19:34 SinglePassSamProgram Processed 526,000,000 records. Elapsed time: 00:06:39s. Time for last 1,000,000: 0s. Last read position: chr17:50,197,034
INFO 2026-06-03 20:19:35 SinglePassSamProgram Processed 527,000,000 records. Elapsed time: 00:06:40s. Time for last 1,000,000: 0s. Last read position: chr17:50,199,921
INFO 2026-06-03 20:19:36 SinglePassSamProgram Processed 528,000,000 records. Elapsed time: 00:06:41s. Time for last 1,000,000: 0s. Last read position: chr17:50,677,791
INFO 2026-06-03 20:19:36 SinglePassSamProgram Processed 529,000,000 records. Elapsed time: 00:06:41s. Time for last 1,000,000: 0s. Last read position: chr17:58,310,084
INFO 2026-06-03 20:19:37 SinglePassSamProgram Processed 530,000,000 records. Elapsed time: 00:06:42s. Time for last 1,000,000: 0s. Last read position: chr17:59,680,944
INFO 2026-06-03 20:19:38 SinglePassSamProgram Processed 531,000,000 records. Elapsed time: 00:06:43s. Time for last 1,000,000: 0s. Last read position: chr17:61,984,334
INFO 2026-06-03 20:19:39 SinglePassSamProgram Processed 532,000,000 records. Elapsed time: 00:06:44s. Time for last 1,000,000: 0s. Last read position: chr17:63,834,273
INFO 2026-06-03 20:19:39 SinglePassSamProgram Processed 533,000,000 records. Elapsed time: 00:06:44s. Time for last 1,000,000: 0s. Last read position: chr17:67,717,977
INFO 2026-06-03 20:19:40 SinglePassSamProgram Processed 534,000,000 records. Elapsed time: 00:06:45s. Time for last 1,000,000: 0s. Last read position: chr17:73,169,626
INFO 2026-06-03 20:19:41 SinglePassSamProgram Processed 535,000,000 records. Elapsed time: 00:06:46s. Time for last 1,000,000: 0s. Last read position: chr17:75,504,975
INFO 2026-06-03 20:19:42 SinglePassSamProgram Processed 536,000,000 records. Elapsed time: 00:06:47s. Time for last 1,000,000: 0s. Last read position: chr17:76,084,529
INFO 2026-06-03 20:19:42 SinglePassSamProgram Processed 537,000,000 records. Elapsed time: 00:06:47s. Time for last 1,000,000: 0s. Last read position: chr17:78,171,536
INFO 2026-06-03 20:19:43 SinglePassSamProgram Processed 538,000,000 records. Elapsed time: 00:06:48s. Time for last 1,000,000: 0s. Last read position: chr17:79,794,994
INFO 2026-06-03 20:19:44 SinglePassSamProgram Processed 539,000,000 records. Elapsed time: 00:06:49s. Time for last 1,000,000: 0s. Last read position: chr17:80,334,214
INFO 2026-06-03 20:19:45 SinglePassSamProgram Processed 540,000,000 records. Elapsed time: 00:06:50s. Time for last 1,000,000: 0s. Last read position: chr17:80,385,056
INFO 2026-06-03 20:19:45 SinglePassSamProgram Processed 541,000,000 records. Elapsed time: 00:06:50s. Time for last 1,000,000: 0s. Last read position: chr17:81,567,511
INFO 2026-06-03 20:19:46 SinglePassSamProgram Processed 542,000,000 records. Elapsed time: 00:06:51s. Time for last 1,000,000: 0s. Last read position: chr17:81,869,819
INFO 2026-06-03 20:19:47 SinglePassSamProgram Processed 543,000,000 records. Elapsed time: 00:06:52s. Time for last 1,000,000: 0s. Last read position: chr17:82,084,264
INFO 2026-06-03 20:19:48 SinglePassSamProgram Processed 544,000,000 records. Elapsed time: 00:06:53s. Time for last 1,000,000: 0s. Last read position: chr17:82,236,074
INFO 2026-06-03 20:19:48 SinglePassSamProgram Processed 545,000,000 records. Elapsed time: 00:06:53s. Time for last 1,000,000: 0s. Last read position: chr18:2,688,354
INFO 2026-06-03 20:19:49 SinglePassSamProgram Processed 546,000,000 records. Elapsed time: 00:06:54s. Time for last 1,000,000: 0s. Last read position: chr18:11,897,145
INFO 2026-06-03 20:19:50 SinglePassSamProgram Processed 547,000,000 records. Elapsed time: 00:06:55s. Time for last 1,000,000: 0s. Last read position: chr18:24,159,504
INFO 2026-06-03 20:19:51 SinglePassSamProgram Processed 548,000,000 records. Elapsed time: 00:06:56s. Time for last 1,000,000: 0s. Last read position: chr18:45,880,117
INFO 2026-06-03 20:19:51 SinglePassSamProgram Processed 549,000,000 records. Elapsed time: 00:06:56s. Time for last 1,000,000: 0s. Last read position: chr18:54,291,923
INFO 2026-06-03 20:19:52 SinglePassSamProgram Processed 550,000,000 records. Elapsed time: 00:06:57s. Time for last 1,000,000: 0s. Last read position: chr18:62,264,770
INFO 2026-06-03 20:19:53 SinglePassSamProgram Processed 551,000,000 records. Elapsed time: 00:06:58s. Time for last 1,000,000: 0s. Last read position: chr18:79,973,830
INFO 2026-06-03 20:19:54 SinglePassSamProgram Processed 552,000,000 records. Elapsed time: 00:06:59s. Time for last 1,000,000: 0s. Last read position: chr19:1,088,623
INFO 2026-06-03 20:19:54 SinglePassSamProgram Processed 553,000,000 records. Elapsed time: 00:06:59s. Time for last 1,000,000: 0s. Last read position: chr19:1,978,478
INFO 2026-06-03 20:19:55 SinglePassSamProgram Processed 554,000,000 records. Elapsed time: 00:07:00s. Time for last 1,000,000: 0s. Last read position: chr19:3,456,562
INFO 2026-06-03 20:19:56 SinglePassSamProgram Processed 555,000,000 records. Elapsed time: 00:07:01s. Time for last 1,000,000: 0s. Last read position: chr19:5,133,828
INFO 2026-06-03 20:19:57 SinglePassSamProgram Processed 556,000,000 records. Elapsed time: 00:07:02s. Time for last 1,000,000: 0s. Last read position: chr19:6,681,973
INFO 2026-06-03 20:19:57 SinglePassSamProgram Processed 557,000,000 records. Elapsed time: 00:07:02s. Time for last 1,000,000: 0s. Last read position: chr19:6,718,248
INFO 2026-06-03 20:19:58 SinglePassSamProgram Processed 558,000,000 records. Elapsed time: 00:07:03s. Time for last 1,000,000: 0s. Last read position: chr19:8,421,807
INFO 2026-06-03 20:19:59 SinglePassSamProgram Processed 559,000,000 records. Elapsed time: 00:07:04s. Time for last 1,000,000: 0s. Last read position: chr19:10,463,852
INFO 2026-06-03 20:20:00 SinglePassSamProgram Processed 560,000,000 records. Elapsed time: 00:07:05s. Time for last 1,000,000: 0s. Last read position: chr19:11,442,475
INFO 2026-06-03 20:20:01 SinglePassSamProgram Processed 561,000,000 records. Elapsed time: 00:07:05s. Time for last 1,000,000: 0s. Last read position: chr19:12,940,759
INFO 2026-06-03 20:20:01 SinglePassSamProgram Processed 562,000,000 records. Elapsed time: 00:07:06s. Time for last 1,000,000: 0s. Last read position: chr19:14,516,817
INFO 2026-06-03 20:20:02 SinglePassSamProgram Processed 563,000,000 records. Elapsed time: 00:07:07s. Time for last 1,000,000: 0s. Last read position: chr19:15,272,960
INFO 2026-06-03 20:20:03 SinglePassSamProgram Processed 564,000,000 records. Elapsed time: 00:07:08s. Time for last 1,000,000: 0s. Last read position: chr19:17,341,478
INFO 2026-06-03 20:20:04 SinglePassSamProgram Processed 565,000,000 records. Elapsed time: 00:07:08s. Time for last 1,000,000: 0s. Last read position: chr19:18,564,966
INFO 2026-06-03 20:20:04 SinglePassSamProgram Processed 566,000,000 records. Elapsed time: 00:07:09s. Time for last 1,000,000: 0s. Last read position: chr19:23,827,163
INFO 2026-06-03 20:20:05 SinglePassSamProgram Processed 567,000,000 records. Elapsed time: 00:07:10s. Time for last 1,000,000: 0s. Last read position: chr19:35,658,669
INFO 2026-06-03 20:20:06 SinglePassSamProgram Processed 568,000,000 records. Elapsed time: 00:07:11s. Time for last 1,000,000: 0s. Last read position: chr19:38,717,926
INFO 2026-06-03 20:20:07 SinglePassSamProgram Processed 569,000,000 records. Elapsed time: 00:07:12s. Time for last 1,000,000: 0s. Last read position: chr19:40,024,656
INFO 2026-06-03 20:20:07 SinglePassSamProgram Processed 570,000,000 records. Elapsed time: 00:07:12s. Time for last 1,000,000: 0s. Last read position: chr19:40,924,427
INFO 2026-06-03 20:20:08 SinglePassSamProgram Processed 571,000,000 records. Elapsed time: 00:07:13s. Time for last 1,000,000: 0s. Last read position: chr19:42,271,906
INFO 2026-06-03 20:20:09 SinglePassSamProgram Processed 572,000,000 records. Elapsed time: 00:07:14s. Time for last 1,000,000: 0s. Last read position: chr19:44,811,288
INFO 2026-06-03 20:20:10 SinglePassSamProgram Processed 573,000,000 records. Elapsed time: 00:07:15s. Time for last 1,000,000: 0s. Last read position: chr19:45,712,673
INFO 2026-06-03 20:20:10 SinglePassSamProgram Processed 574,000,000 records. Elapsed time: 00:07:15s. Time for last 1,000,000: 0s. Last read position: chr19:47,747,003
INFO 2026-06-03 20:20:11 SinglePassSamProgram Processed 575,000,000 records. Elapsed time: 00:07:16s. Time for last 1,000,000: 0s. Last read position: chr19:49,338,664
INFO 2026-06-03 20:20:12 SinglePassSamProgram Processed 576,000,000 records. Elapsed time: 00:07:17s. Time for last 1,000,000: 0s. Last read position: chr19:49,909,118
INFO 2026-06-03 20:20:13 SinglePassSamProgram Processed 577,000,000 records. Elapsed time: 00:07:18s. Time for last 1,000,000: 0s. Last read position: chr19:52,017,042
INFO 2026-06-03 20:20:13 SinglePassSamProgram Processed 578,000,000 records. Elapsed time: 00:07:18s. Time for last 1,000,000: 0s. Last read position: chr19:54,456,810
INFO 2026-06-03 20:20:14 SinglePassSamProgram Processed 579,000,000 records. Elapsed time: 00:07:19s. Time for last 1,000,000: 0s. Last read position: chr19:56,621,855
INFO 2026-06-03 20:20:15 SinglePassSamProgram Processed 580,000,000 records. Elapsed time: 00:07:20s. Time for last 1,000,000: 0s. Last read position: chr20:430,443
INFO 2026-06-03 20:20:16 SinglePassSamProgram Processed 581,000,000 records. Elapsed time: 00:07:21s. Time for last 1,000,000: 0s. Last read position: chr20:3,575,934
INFO 2026-06-03 20:20:16 SinglePassSamProgram Processed 582,000,000 records. Elapsed time: 00:07:21s. Time for last 1,000,000: 0s. Last read position: chr20:10,639,794
INFO 2026-06-03 20:20:17 SinglePassSamProgram Processed 583,000,000 records. Elapsed time: 00:07:22s. Time for last 1,000,000: 0s. Last read position: chr20:18,480,489
INFO 2026-06-03 20:20:18 SinglePassSamProgram Processed 584,000,000 records. Elapsed time: 00:07:23s. Time for last 1,000,000: 0s. Last read position: chr20:25,676,668
INFO 2026-06-03 20:20:19 SinglePassSamProgram Processed 585,000,000 records. Elapsed time: 00:07:24s. Time for last 1,000,000: 0s. Last read position: chr20:33,241,467
INFO 2026-06-03 20:20:19 SinglePassSamProgram Processed 586,000,000 records. Elapsed time: 00:07:24s. Time for last 1,000,000: 0s. Last read position: chr20:35,000,709
INFO 2026-06-03 20:20:20 SinglePassSamProgram Processed 587,000,000 records. Elapsed time: 00:07:25s. Time for last 1,000,000: 0s. Last read position: chr20:36,549,184
INFO 2026-06-03 20:20:21 SinglePassSamProgram Processed 588,000,000 records. Elapsed time: 00:07:26s. Time for last 1,000,000: 0s. Last read position: chr20:41,077,620
INFO 2026-06-03 20:20:22 SinglePassSamProgram Processed 589,000,000 records. Elapsed time: 00:07:27s. Time for last 1,000,000: 0s. Last read position: chr20:45,335,784
INFO 2026-06-03 20:20:22 SinglePassSamProgram Processed 590,000,000 records. Elapsed time: 00:07:27s. Time for last 1,000,000: 0s. Last read position: chr20:45,945,737
INFO 2026-06-03 20:20:23 SinglePassSamProgram Processed 591,000,000 records. Elapsed time: 00:07:28s. Time for last 1,000,000: 0s. Last read position: chr20:49,539,580
INFO 2026-06-03 20:20:24 SinglePassSamProgram Processed 592,000,000 records. Elapsed time: 00:07:29s. Time for last 1,000,000: 0s. Last read position: chr20:58,670,512
INFO 2026-06-03 20:20:25 SinglePassSamProgram Processed 593,000,000 records. Elapsed time: 00:07:30s. Time for last 1,000,000: 0s. Last read position: chr20:62,318,482
INFO 2026-06-03 20:20:25 SinglePassSamProgram Processed 594,000,000 records. Elapsed time: 00:07:30s. Time for last 1,000,000: 0s. Last read position: chr20:63,493,137
INFO 2026-06-03 20:20:26 SinglePassSamProgram Processed 595,000,000 records. Elapsed time: 00:07:31s. Time for last 1,000,000: 0s. Last read position: chr20:63,966,583
INFO 2026-06-03 20:20:27 SinglePassSamProgram Processed 596,000,000 records. Elapsed time: 00:07:32s. Time for last 1,000,000: 0s. Last read position: chr21:8,217,269
INFO 2026-06-03 20:20:28 SinglePassSamProgram Processed 597,000,000 records. Elapsed time: 00:07:33s. Time for last 1,000,000: 0s. Last read position: chr21:8,400,290
INFO 2026-06-03 20:20:28 SinglePassSamProgram Processed 598,000,000 records. Elapsed time: 00:07:33s. Time for last 1,000,000: 0s. Last read position: chr21:17,793,460
INFO 2026-06-03 20:20:29 SinglePassSamProgram Processed 599,000,000 records. Elapsed time: 00:07:34s. Time for last 1,000,000: 0s. Last read position: chr21:33,567,143
INFO 2026-06-03 20:20:30 SinglePassSamProgram Processed 600,000,000 records. Elapsed time: 00:07:35s. Time for last 1,000,000: 0s. Last read position: chr21:36,231,053
INFO 2026-06-03 20:20:31 SinglePassSamProgram Processed 601,000,000 records. Elapsed time: 00:07:35s. Time for last 1,000,000: 0s. Last read position: chr21:42,848,240
INFO 2026-06-03 20:20:31 SinglePassSamProgram Processed 602,000,000 records. Elapsed time: 00:07:36s. Time for last 1,000,000: 0s. Last read position: chr21:45,468,342
INFO 2026-06-03 20:20:32 SinglePassSamProgram Processed 603,000,000 records. Elapsed time: 00:07:37s. Time for last 1,000,000: 0s. Last read position: chr21:46,346,819
INFO 2026-06-03 20:20:33 SinglePassSamProgram Processed 604,000,000 records. Elapsed time: 00:07:38s. Time for last 1,000,000: 0s. Last read position: chr22:20,426,198
INFO 2026-06-03 20:20:34 SinglePassSamProgram Processed 605,000,000 records. Elapsed time: 00:07:38s. Time for last 1,000,000: 0s. Last read position: chr22:23,314,666
INFO 2026-06-03 20:20:34 SinglePassSamProgram Processed 606,000,000 records. Elapsed time: 00:07:39s. Time for last 1,000,000: 0s. Last read position: chr22:28,795,207
INFO 2026-06-03 20:20:35 SinglePassSamProgram Processed 607,000,000 records. Elapsed time: 00:07:40s. Time for last 1,000,000: 0s. Last read position: chr22:30,287,444
INFO 2026-06-03 20:20:36 SinglePassSamProgram Processed 608,000,000 records. Elapsed time: 00:07:41s. Time for last 1,000,000: 0s. Last read position: chr22:36,253,187
INFO 2026-06-03 20:20:37 SinglePassSamProgram Processed 609,000,000 records. Elapsed time: 00:07:42s. Time for last 1,000,000: 0s. Last read position: chr22:37,751,786
INFO 2026-06-03 20:20:37 SinglePassSamProgram Processed 610,000,000 records. Elapsed time: 00:07:42s. Time for last 1,000,000: 0s. Last read position: chr22:40,265,370
INFO 2026-06-03 20:20:38 SinglePassSamProgram Processed 611,000,000 records. Elapsed time: 00:07:43s. Time for last 1,000,000: 0s. Last read position: chr22:42,213,802
INFO 2026-06-03 20:20:39 SinglePassSamProgram Processed 612,000,000 records. Elapsed time: 00:07:44s. Time for last 1,000,000: 0s. Last read position: chr22:46,793,619
INFO 2026-06-03 20:20:40 SinglePassSamProgram Processed 613,000,000 records. Elapsed time: 00:07:45s. Time for last 1,000,000: 0s. Last read position: chr22:50,503,429
INFO 2026-06-03 20:20:40 SinglePassSamProgram Processed 614,000,000 records. Elapsed time: 00:07:45s. Time for last 1,000,000: 0s. Last read position: chrX:2,488,670
INFO 2026-06-03 20:20:41 SinglePassSamProgram Processed 615,000,000 records. Elapsed time: 00:07:46s. Time for last 1,000,000: 0s. Last read position: chrX:15,518,160
INFO 2026-06-03 20:20:42 SinglePassSamProgram Processed 616,000,000 records. Elapsed time: 00:07:47s. Time for last 1,000,000: 0s. Last read position: chrX:19,536,281
INFO 2026-06-03 20:20:43 SinglePassSamProgram Processed 617,000,000 records. Elapsed time: 00:07:48s. Time for last 1,000,000: 0s. Last read position: chrX:40,071,048
INFO 2026-06-03 20:20:43 SinglePassSamProgram Processed 618,000,000 records. Elapsed time: 00:07:48s. Time for last 1,000,000: 0s. Last read position: chrX:43,732,728
INFO 2026-06-03 20:20:44 SinglePassSamProgram Processed 619,000,000 records. Elapsed time: 00:07:49s. Time for last 1,000,000: 0s. Last read position: chrX:47,212,429
INFO 2026-06-03 20:20:45 SinglePassSamProgram Processed 620,000,000 records. Elapsed time: 00:07:50s. Time for last 1,000,000: 0s. Last read position: chrX:48,957,148
INFO 2026-06-03 20:20:46 SinglePassSamProgram Processed 621,000,000 records. Elapsed time: 00:07:51s. Time for last 1,000,000: 0s. Last read position: chrX:53,413,304
INFO 2026-06-03 20:20:46 SinglePassSamProgram Processed 622,000,000 records. Elapsed time: 00:07:51s. Time for last 1,000,000: 0s. Last read position: chrX:64,190,537
INFO 2026-06-03 20:20:47 SinglePassSamProgram Processed 623,000,000 records. Elapsed time: 00:07:52s. Time for last 1,000,000: 0s. Last read position: chrX:71,459,175
INFO 2026-06-03 20:20:48 SinglePassSamProgram Processed 624,000,000 records. Elapsed time: 00:07:53s. Time for last 1,000,000: 0s. Last read position: chrX:77,989,604
INFO 2026-06-03 20:20:49 SinglePassSamProgram Processed 625,000,000 records. Elapsed time: 00:07:54s. Time for last 1,000,000: 0s. Last read position: chrX:103,676,971
INFO 2026-06-03 20:20:49 SinglePassSamProgram Processed 626,000,000 records. Elapsed time: 00:07:54s. Time for last 1,000,000: 0s. Last read position: chrX:119,786,723
INFO 2026-06-03 20:20:50 SinglePassSamProgram Processed 627,000,000 records. Elapsed time: 00:07:55s. Time for last 1,000,000: 0s. Last read position: chrX:129,798,512
INFO 2026-06-03 20:20:51 SinglePassSamProgram Processed 628,000,000 records. Elapsed time: 00:07:56s. Time for last 1,000,000: 0s. Last read position: chrX:150,645,760
INFO 2026-06-03 20:20:52 SinglePassSamProgram Processed 629,000,000 records. Elapsed time: 00:07:57s. Time for last 1,000,000: 0s. Last read position: chrX:153,941,608
INFO 2026-06-03 20:20:52 SinglePassSamProgram Processed 630,000,000 records. Elapsed time: 00:07:57s. Time for last 1,000,000: 0s. Last read position: chrX:154,361,477
INFO 2026-06-03 20:20:53 SinglePassSamProgram Processed 631,000,000 records. Elapsed time: 00:07:58s. Time for last 1,000,000: 0s. Last read position: chrX:154,534,035
INFO 2026-06-03 20:20:54 SinglePassSamProgram Processed 632,000,000 records. Elapsed time: 00:07:59s. Time for last 1,000,000: 0s. Last read position: GL000220.1:114,142
INFO 2026-06-03 20:20:55 SinglePassSamProgram Processed 633,000,000 records. Elapsed time: 00:07:59s. Time for last 1,000,000: 0s. Last read position: GL000220.1:159,442
INFO 2026-06-03 20:20:55 SinglePassSamProgram Processed 634,000,000 records. Elapsed time: 00:08:00s. Time for last 1,000,000: 0s. Last read position: KI270733.1:133,484
INFO 2026-06-03 20:20:56 RExecutor Executing R script via command: Rscript /tmp/script15446629508029829691.R /tmp/nxf.XXXXAOZ1Aa/aih-tih-sc-377071-R1_A23YTGFLT4_1_collectinsertsize.txt /tmp/nxf.XXXXAOZ1Aa/aih-tih-sc-377071-R1_A23YTGFLT4_1_collectinsertsize.pdf aih-tih-sc-377071-R1_A23YTGFLT4_1.Aligned.sortedByCoord.out.bam
ERROR 2026-06-03 20:20:56 ProcessExecutor /bin/sh: warning: setlocale: LC_ALL: cannot change locale (en_US.UTF-8)
ERROR 2026-06-03 20:20:56 ProcessExecutor sh: warning: setlocale: LC_ALL: cannot change locale (en_US.UTF-8)
ERROR 2026-06-03 20:20:56 ProcessExecutor sh: warning: setlocale: LC_ALL: cannot change locale (en_US.UTF-8)
ERROR 2026-06-03 20:20:56 ProcessExecutor During startup - Warning messages:
ERROR 2026-06-03 20:20:56 ProcessExecutor 1: Setting LC_CTYPE failed, using "C"
ERROR 2026-06-03 20:20:56 ProcessExecutor 2: Setting LC_COLLATE failed, using "C"
ERROR 2026-06-03 20:20:56 ProcessExecutor 3: Setting LC_TIME failed, using "C"
ERROR 2026-06-03 20:20:56 ProcessExecutor 4: Setting LC_MESSAGES failed, using "C"
ERROR 2026-06-03 20:20:56 ProcessExecutor 5: Setting LC_MONETARY failed, using "C"
ERROR 2026-06-03 20:20:56 ProcessExecutor 6: Setting LC_PAPER failed, using "C"
ERROR 2026-06-03 20:20:56 ProcessExecutor 7: Setting LC_MEASUREMENT failed, using "C"
INFO 2026-06-03 20:20:56 ProcessExecutor null device
INFO 2026-06-03 20:20:56 ProcessExecutor 1
ERROR 2026-06-03 20:20:56 ProcessExecutor sh: warning: setlocale: LC_ALL: cannot change locale (en_US.UTF-8)
[Wed Jun 03 20:20:56 GMT 2026] picard.analysis.CollectInsertSizeMetrics done. Elapsed time: 8.03 minutes.
Runtime.totalMemory()=352321536