/usr/local/bin/picard: line 5: warning: setlocale: LC_ALL: cannot change locale (en_US.UTF-8): No such file or directory Jun 03, 2026 8:27:04 PM com.intel.gkl.NativeLibraryLoader load INFO: Loading libgkl_compression.so from jar:file:/usr/local/share/picard-3.1.0-0/picard.jar!/com/intel/gkl/native/libgkl_compression.so [Wed Jun 03 20:27:04 GMT 2026] CollectRnaSeqMetrics --REF_FLAT ref_annot.gtf.refflat --RIBOSOMAL_INTERVALS ctat_ref_annot.interval_list --STRAND_SPECIFICITY NONE --INPUT aih-tih-sc-2b9bfa-R1_A23YTGFLT4_1.Aligned.sortedByCoord.out.bam --OUTPUT aih-tih-sc-2b9bfa-R1_A23YTGFLT4_1_rna_metrics.txt --TMP_DIR ./tmp --MINIMUM_LENGTH 500 --RRNA_FRAGMENT_PERCENTAGE 0.8 --METRIC_ACCUMULATION_LEVEL ALL_READS --END_BIAS_BASES 100 --ASSUME_SORTED true --STOP_AFTER 0 --VERBOSITY INFO --QUIET false --VALIDATION_STRINGENCY STRICT --COMPRESSION_LEVEL 5 --MAX_RECORDS_IN_RAM 500000 --CREATE_INDEX false --CREATE_MD5_FILE false --help false --version false --showHidden false --USE_JDK_DEFLATER false --USE_JDK_INFLATER false [Wed Jun 03 20:27:04 GMT 2026] Executing as ?@nf-7b342bf744480b70c3bf47cd28569807-35331-9hm45 on Linux 6.12.88 amd64; OpenJDK 64-Bit Server VM 20-internal-adhoc..src; Deflater: Intel; Inflater: Intel; Provider GCS is available; Picard version: Version:3.1.0 WARNING: BAM index file /tmp/nxf.XXXXlFZwzg/aih-tih-sc-2b9bfa-R1_A23YTGFLT4_1.Aligned.sortedByCoord.out.bam.bai is older than BAM /tmp/nxf.XXXXlFZwzg/aih-tih-sc-2b9bfa-R1_A23YTGFLT4_1.Aligned.sortedByCoord.out.bam INFO 2026-06-03 20:27:06 CollectRnaSeqMetrics Loaded 58279 genes. INFO 2026-06-03 20:27:19 SinglePassSamProgram Processed 1,000,000 records. Elapsed time: 00:00:12s. Time for last 1,000,000: 12s. Last read position: chr1:1,353,871 INFO 2026-06-03 20:27:28 SinglePassSamProgram Processed 2,000,000 records. Elapsed time: 00:00:21s. Time for last 1,000,000: 8s. Last read position: chr1:2,406,582 INFO 2026-06-03 20:27:36 SinglePassSamProgram Processed 3,000,000 records. Elapsed time: 00:00:30s. Time for last 1,000,000: 8s. Last read position: chr1:8,359,785 INFO 2026-06-03 20:27:46 SinglePassSamProgram Processed 4,000,000 records. Elapsed time: 00:00:39s. Time for last 1,000,000: 9s. Last read position: chr1:11,020,517 INFO 2026-06-03 20:28:00 SinglePassSamProgram Processed 5,000,000 records. Elapsed time: 00:00:53s. Time for last 1,000,000: 14s. Last read position: chr1:13,779,467 INFO 2026-06-03 20:28:06 SinglePassSamProgram Processed 6,000,000 records. Elapsed time: 00:00:59s. Time for last 1,000,000: 5s. Last read position: chr1:16,579,270 INFO 2026-06-03 20:28:17 SinglePassSamProgram Processed 7,000,000 records. Elapsed time: 00:01:10s. Time for last 1,000,000: 10s. Last read position: chr1:19,155,635 INFO 2026-06-03 20:28:26 SinglePassSamProgram Processed 8,000,000 records. Elapsed time: 00:01:19s. Time for last 1,000,000: 9s. Last read position: chr1:20,773,496 INFO 2026-06-03 20:28:39 SinglePassSamProgram Processed 9,000,000 records. Elapsed time: 00:01:33s. Time for last 1,000,000: 13s. Last read position: chr1:21,846,448 INFO 2026-06-03 20:28:55 SinglePassSamProgram Processed 10,000,000 records. Elapsed time: 00:01:48s. Time for last 1,000,000: 15s. Last read position: chr1:22,120,038 INFO 2026-06-03 20:28:58 SinglePassSamProgram Processed 11,000,000 records. Elapsed time: 00:01:52s. Time for last 1,000,000: 3s. Last read position: chr1:23,429,856 INFO 2026-06-03 20:29:05 SinglePassSamProgram Processed 12,000,000 records. Elapsed time: 00:01:58s. Time for last 1,000,000: 6s. Last read position: chr1:25,901,611 INFO 2026-06-03 20:29:13 SinglePassSamProgram Processed 13,000,000 records. Elapsed time: 00:02:06s. Time for last 1,000,000: 8s. Last read position: chr1:27,345,386 INFO 2026-06-03 20:29:19 SinglePassSamProgram Processed 14,000,000 records. Elapsed time: 00:02:12s. Time for last 1,000,000: 6s. Last read position: chr1:30,936,746 INFO 2026-06-03 20:29:34 SinglePassSamProgram Processed 15,000,000 records. Elapsed time: 00:02:27s. Time for last 1,000,000: 15s. Last read position: chr1:32,203,901 INFO 2026-06-03 20:29:43 SinglePassSamProgram Processed 16,000,000 records. Elapsed time: 00:02:36s. Time for last 1,000,000: 8s. Last read position: chr1:34,757,537 INFO 2026-06-03 20:29:49 SinglePassSamProgram Processed 17,000,000 records. Elapsed time: 00:02:42s. Time for last 1,000,000: 6s. Last read position: chr1:37,501,882 INFO 2026-06-03 20:30:51 SinglePassSamProgram Processed 18,000,000 records. Elapsed time: 00:03:44s. Time for last 1,000,000: 62s. Last read position: chr1:39,485,642 INFO 2026-06-03 20:31:02 SinglePassSamProgram Processed 19,000,000 records. Elapsed time: 00:03:55s. Time for last 1,000,000: 10s. Last read position: chr1:42,929,990 INFO 2026-06-03 20:31:21 SinglePassSamProgram Processed 20,000,000 records. Elapsed time: 00:04:14s. Time for last 1,000,000: 19s. Last read position: chr1:43,984,948 INFO 2026-06-03 20:31:30 SinglePassSamProgram Processed 21,000,000 records. Elapsed time: 00:04:23s. Time for last 1,000,000: 8s. Last read position: chr1:46,184,650 INFO 2026-06-03 20:31:39 SinglePassSamProgram Processed 22,000,000 records. Elapsed time: 00:04:32s. Time for last 1,000,000: 8s. Last read position: chr1:51,819,849 INFO 2026-06-03 20:31:47 SinglePassSamProgram Processed 23,000,000 records. Elapsed time: 00:04:40s. Time for last 1,000,000: 8s. Last read position: chr1:55,162,247 INFO 2026-06-03 20:32:01 SinglePassSamProgram Processed 24,000,000 records. Elapsed time: 00:04:54s. Time for last 1,000,000: 14s. Last read position: chr1:67,049,801 INFO 2026-06-03 20:32:13 SinglePassSamProgram Processed 25,000,000 records. Elapsed time: 00:05:06s. Time for last 1,000,000: 11s. Last read position: chr1:85,582,170 INFO 2026-06-03 20:32:17 SinglePassSamProgram Processed 26,000,000 records. Elapsed time: 00:05:10s. Time for last 1,000,000: 4s. Last read position: chr1:89,117,658 INFO 2026-06-03 20:32:24 SinglePassSamProgram Processed 27,000,000 records. Elapsed time: 00:05:17s. Time for last 1,000,000: 6s. Last read position: chr1:100,015,319 INFO 2026-06-03 20:32:34 SinglePassSamProgram Processed 28,000,000 records. Elapsed time: 00:05:27s. Time for last 1,000,000: 10s. Last read position: chr1:109,752,041 INFO 2026-06-03 20:32:42 SinglePassSamProgram Processed 29,000,000 records. Elapsed time: 00:05:35s. Time for last 1,000,000: 7s. Last read position: chr1:112,702,569 INFO 2026-06-03 20:32:50 SinglePassSamProgram Processed 30,000,000 records. Elapsed time: 00:05:44s. Time for last 1,000,000: 8s. Last read position: chr1:114,739,769 INFO 2026-06-03 20:32:57 SinglePassSamProgram Processed 31,000,000 records. Elapsed time: 00:05:50s. Time for last 1,000,000: 6s. Last read position: chr1:119,798,574 INFO 2026-06-03 20:33:02 SinglePassSamProgram Processed 32,000,000 records. Elapsed time: 00:05:56s. Time for last 1,000,000: 5s. Last read position: chr1:120,511,713 INFO 2026-06-03 20:33:07 SinglePassSamProgram Processed 33,000,000 records. Elapsed time: 00:06:00s. Time for last 1,000,000: 4s. Last read position: chr1:146,066,326 INFO 2026-06-03 20:33:13 SinglePassSamProgram Processed 34,000,000 records. Elapsed time: 00:06:07s. Time for last 1,000,000: 6s. Last read position: chr1:148,558,381 INFO 2026-06-03 20:33:21 SinglePassSamProgram Processed 35,000,000 records. Elapsed time: 00:06:14s. Time for last 1,000,000: 7s. Last read position: chr1:149,852,653 INFO 2026-06-03 20:33:26 SinglePassSamProgram Processed 36,000,000 records. Elapsed time: 00:06:19s. Time for last 1,000,000: 5s. Last read position: chr1:150,627,555 INFO 2026-06-03 20:33:35 SinglePassSamProgram Processed 37,000,000 records. Elapsed time: 00:06:29s. Time for last 1,000,000: 9s. Last read position: chr1:151,518,505 INFO 2026-06-03 20:33:41 SinglePassSamProgram Processed 38,000,000 records. Elapsed time: 00:06:34s. Time for last 1,000,000: 5s. Last read position: chr1:153,813,376 INFO 2026-06-03 20:33:53 SinglePassSamProgram Processed 39,000,000 records. Elapsed time: 00:06:47s. Time for last 1,000,000: 12s. Last read position: chr1:154,272,722 INFO 2026-06-03 20:34:08 SinglePassSamProgram Processed 40,000,000 records. Elapsed time: 00:07:02s. Time for last 1,000,000: 15s. Last read position: chr1:155,187,290 INFO 2026-06-03 20:34:25 SinglePassSamProgram Processed 41,000,000 records. Elapsed time: 00:07:18s. Time for last 1,000,000: 16s. Last read position: chr1:155,915,858 INFO 2026-06-03 20:34:44 SinglePassSamProgram Processed 42,000,000 records. Elapsed time: 00:07:38s. Time for last 1,000,000: 19s. Last read position: chr1:156,137,190 INFO 2026-06-03 20:34:54 SinglePassSamProgram Processed 43,000,000 records. Elapsed time: 00:07:48s. Time for last 1,000,000: 9s. Last read position: chr1:156,677,193 INFO 2026-06-03 20:35:01 SinglePassSamProgram Processed 44,000,000 records. Elapsed time: 00:07:55s. Time for last 1,000,000: 6s. Last read position: chr1:160,296,076 INFO 2026-06-03 20:35:15 SinglePassSamProgram Processed 45,000,000 records. Elapsed time: 00:08:08s. Time for last 1,000,000: 13s. Last read position: chr1:161,581,370 INFO 2026-06-03 20:35:21 SinglePassSamProgram Processed 46,000,000 records. Elapsed time: 00:08:14s. Time for last 1,000,000: 5s. Last read position: chr1:167,722,161 INFO 2026-06-03 20:35:28 SinglePassSamProgram Processed 47,000,000 records. Elapsed time: 00:08:21s. Time for last 1,000,000: 6s. Last read position: chr1:171,584,411 INFO 2026-06-03 20:35:35 SinglePassSamProgram Processed 48,000,000 records. Elapsed time: 00:08:28s. Time for last 1,000,000: 7s. Last read position: chr1:180,175,320 INFO 2026-06-03 20:35:40 SinglePassSamProgram Processed 49,000,000 records. Elapsed time: 00:08:34s. Time for last 1,000,000: 5s. Last read position: chr1:184,706,749 INFO 2026-06-03 20:35:48 SinglePassSamProgram Processed 50,000,000 records. Elapsed time: 00:08:42s. Time for last 1,000,000: 7s. Last read position: chr1:186,679,170 INFO 2026-06-03 20:35:56 SinglePassSamProgram Processed 51,000,000 records. Elapsed time: 00:08:49s. Time for last 1,000,000: 7s. Last read position: chr1:201,623,402 INFO 2026-06-03 20:36:04 SinglePassSamProgram Processed 52,000,000 records. Elapsed time: 00:08:57s. Time for last 1,000,000: 8s. Last read position: chr1:203,483,318 INFO 2026-06-03 20:36:15 SinglePassSamProgram Processed 53,000,000 records. Elapsed time: 00:09:08s. Time for last 1,000,000: 11s. Last read position: chr1:205,592,210 INFO 2026-06-03 20:36:19 SinglePassSamProgram Processed 54,000,000 records. Elapsed time: 00:09:12s. Time for last 1,000,000: 3s. Last read position: chr1:206,932,476 INFO 2026-06-03 20:36:21 SinglePassSamProgram Processed 55,000,000 records. Elapsed time: 00:09:14s. Time for last 1,000,000: 2s. Last read position: chr1:206,937,237 INFO 2026-06-03 20:36:26 SinglePassSamProgram Processed 56,000,000 records. Elapsed time: 00:09:19s. Time for last 1,000,000: 4s. Last read position: chr1:208,042,123 INFO 2026-06-03 20:36:31 SinglePassSamProgram Processed 57,000,000 records. Elapsed time: 00:09:24s. Time for last 1,000,000: 5s. Last read position: chr1:222,628,168 INFO 2026-06-03 20:36:38 SinglePassSamProgram Processed 58,000,000 records. Elapsed time: 00:09:31s. Time for last 1,000,000: 7s. Last read position: chr1:225,887,399 INFO 2026-06-03 20:37:02 SinglePassSamProgram Processed 59,000,000 records. Elapsed time: 00:09:55s. Time for last 1,000,000: 23s. Last read position: chr1:228,401,178 INFO 2026-06-03 20:37:09 SinglePassSamProgram Processed 60,000,000 records. Elapsed time: 00:10:02s. Time for last 1,000,000: 6s. Last read position: chr1:235,335,283 INFO 2026-06-03 20:37:22 SinglePassSamProgram Processed 61,000,000 records. Elapsed time: 00:10:15s. Time for last 1,000,000: 13s. Last read position: chr1:244,055,033 INFO 2026-06-03 20:37:32 SinglePassSamProgram Processed 62,000,000 records. Elapsed time: 00:10:25s. Time for last 1,000,000: 10s. Last read position: chr2:6,861,209 INFO 2026-06-03 20:37:41 SinglePassSamProgram Processed 63,000,000 records. Elapsed time: 00:10:34s. Time for last 1,000,000: 8s. Last read position: chr2:15,556,783 INFO 2026-06-03 20:37:48 SinglePassSamProgram Processed 64,000,000 records. Elapsed time: 00:10:41s. Time for last 1,000,000: 7s. Last read position: chr2:24,644,093 INFO 2026-06-03 20:37:56 SinglePassSamProgram Processed 65,000,000 records. Elapsed time: 00:10:49s. Time for last 1,000,000: 8s. Last read position: chr2:27,085,226 INFO 2026-06-03 20:38:04 SinglePassSamProgram Processed 66,000,000 records. Elapsed time: 00:10:58s. Time for last 1,000,000: 8s. Last read position: chr2:28,793,943 INFO 2026-06-03 20:38:12 SinglePassSamProgram Processed 67,000,000 records. Elapsed time: 00:11:05s. Time for last 1,000,000: 7s. Last read position: chr2:32,916,258 INFO 2026-06-03 20:38:17 SinglePassSamProgram Processed 68,000,000 records. Elapsed time: 00:11:10s. Time for last 1,000,000: 4s. Last read position: chr2:32,916,264 INFO 2026-06-03 20:38:19 SinglePassSamProgram Processed 69,000,000 records. Elapsed time: 00:11:12s. Time for last 1,000,000: 1s. Last read position: chr2:32,916,406 INFO 2026-06-03 20:38:25 SinglePassSamProgram Processed 70,000,000 records. Elapsed time: 00:11:18s. Time for last 1,000,000: 6s. Last read position: chr2:37,671,620 INFO 2026-06-03 20:38:35 SinglePassSamProgram Processed 71,000,000 records. Elapsed time: 00:11:29s. Time for last 1,000,000: 10s. Last read position: chr2:43,974,623 INFO 2026-06-03 20:38:43 SinglePassSamProgram Processed 72,000,000 records. Elapsed time: 00:11:37s. Time for last 1,000,000: 7s. Last read position: chr2:49,922,127 INFO 2026-06-03 20:38:56 SinglePassSamProgram Processed 73,000,000 records. Elapsed time: 00:11:49s. Time for last 1,000,000: 12s. Last read position: chr2:54,646,352 INFO 2026-06-03 20:39:16 SinglePassSamProgram Processed 74,000,000 records. Elapsed time: 00:12:10s. Time for last 1,000,000: 20s. Last read position: chr2:61,222,618 INFO 2026-06-03 20:39:33 SinglePassSamProgram Processed 75,000,000 records. Elapsed time: 00:12:26s. Time for last 1,000,000: 16s. Last read position: chr2:69,102,847 INFO 2026-06-03 20:39:52 SinglePassSamProgram Processed 76,000,000 records. Elapsed time: 00:12:45s. Time for last 1,000,000: 19s. Last read position: chr2:72,944,963 INFO 2026-06-03 20:40:03 SinglePassSamProgram Processed 77,000,000 records. Elapsed time: 00:12:56s. Time for last 1,000,000: 10s. Last read position: chr2:74,461,308 INFO 2026-06-03 20:40:09 SinglePassSamProgram Processed 78,000,000 records. Elapsed time: 00:13:02s. Time for last 1,000,000: 6s. Last read position: chr2:85,541,254 INFO 2026-06-03 20:40:14 SinglePassSamProgram Processed 79,000,000 records. Elapsed time: 00:13:07s. Time for last 1,000,000: 5s. Last read position: chr2:88,857,503 INFO 2026-06-03 20:40:22 SinglePassSamProgram Processed 80,000,000 records. Elapsed time: 00:13:15s. Time for last 1,000,000: 7s. Last read position: chr2:97,557,111 INFO 2026-06-03 20:40:33 SinglePassSamProgram Processed 81,000,000 records. Elapsed time: 00:13:26s. Time for last 1,000,000: 11s. Last read position: chr2:105,386,430 INFO 2026-06-03 20:40:37 SinglePassSamProgram Processed 82,000,000 records. Elapsed time: 00:13:30s. Time for last 1,000,000: 4s. Last read position: chr2:109,347,729 INFO 2026-06-03 20:40:41 SinglePassSamProgram Processed 83,000,000 records. Elapsed time: 00:13:34s. Time for last 1,000,000: 3s. Last read position: chr2:111,772,383 INFO 2026-06-03 20:40:46 SinglePassSamProgram Processed 84,000,000 records. Elapsed time: 00:13:39s. Time for last 1,000,000: 5s. Last read position: chr2:120,289,731 INFO 2026-06-03 20:40:58 SinglePassSamProgram Processed 85,000,000 records. Elapsed time: 00:13:52s. Time for last 1,000,000: 12s. Last read position: chr2:130,152,610 INFO 2026-06-03 20:41:10 SinglePassSamProgram Processed 86,000,000 records. Elapsed time: 00:14:03s. Time for last 1,000,000: 11s. Last read position: chr2:144,424,817 INFO 2026-06-03 20:41:20 SinglePassSamProgram Processed 87,000,000 records. Elapsed time: 00:14:14s. Time for last 1,000,000: 10s. Last read position: chr2:159,881,123 INFO 2026-06-03 20:41:32 SinglePassSamProgram Processed 88,000,000 records. Elapsed time: 00:14:25s. Time for last 1,000,000: 11s. Last read position: chr2:171,553,345 INFO 2026-06-03 20:41:42 SinglePassSamProgram Processed 89,000,000 records. Elapsed time: 00:14:35s. Time for last 1,000,000: 9s. Last read position: chr2:177,231,747 INFO 2026-06-03 20:42:19 SinglePassSamProgram Processed 90,000,000 records. Elapsed time: 00:15:12s. Time for last 1,000,000: 37s. Last read position: chr2:186,659,046 INFO 2026-06-03 20:42:29 SinglePassSamProgram Processed 91,000,000 records. Elapsed time: 00:15:22s. Time for last 1,000,000: 9s. Last read position: chr2:189,064,023 INFO 2026-06-03 20:42:42 SinglePassSamProgram Processed 92,000,000 records. Elapsed time: 00:15:35s. Time for last 1,000,000: 12s. Last read position: chr2:197,398,460 INFO 2026-06-03 20:43:00 SinglePassSamProgram Processed 93,000,000 records. Elapsed time: 00:15:53s. Time for last 1,000,000: 17s. Last read position: chr2:202,523,983 INFO 2026-06-03 20:43:09 SinglePassSamProgram Processed 94,000,000 records. Elapsed time: 00:16:02s. Time for last 1,000,000: 9s. Last read position: chr2:208,248,562 INFO 2026-06-03 20:43:26 SinglePassSamProgram Processed 95,000,000 records. Elapsed time: 00:16:20s. Time for last 1,000,000: 17s. Last read position: chr2:215,376,635 INFO 2026-06-03 20:44:08 SinglePassSamProgram Processed 96,000,000 records. Elapsed time: 00:17:01s. Time for last 1,000,000: 41s. Last read position: chr2:215,408,333 INFO 2026-06-03 20:45:03 SinglePassSamProgram Processed 97,000,000 records. Elapsed time: 00:17:56s. Time for last 1,000,000: 55s. Last read position: chr2:216,676,742 INFO 2026-06-03 20:45:20 SinglePassSamProgram Processed 98,000,000 records. Elapsed time: 00:18:13s. Time for last 1,000,000: 16s. Last read position: chr2:218,269,962 INFO 2026-06-03 20:45:29 SinglePassSamProgram Processed 99,000,000 records. Elapsed time: 00:18:22s. Time for last 1,000,000: 9s. Last read position: chr2:219,418,401 INFO 2026-06-03 20:45:36 SinglePassSamProgram Processed 100,000,000 records. Elapsed time: 00:18:29s. Time for last 1,000,000: 7s. Last read position: chr2:223,975,772 INFO 2026-06-03 20:45:49 SinglePassSamProgram Processed 101,000,000 records. Elapsed time: 00:18:42s. Time for last 1,000,000: 12s. Last read position: chr2:230,875,714 INFO 2026-06-03 20:46:02 SinglePassSamProgram Processed 102,000,000 records. Elapsed time: 00:18:55s. Time for last 1,000,000: 12s. Last read position: chr2:232,549,510 INFO 2026-06-03 20:46:17 SinglePassSamProgram Processed 103,000,000 records. Elapsed time: 00:19:10s. Time for last 1,000,000: 14s. Last read position: chr2:237,366,909 INFO 2026-06-03 20:46:40 SinglePassSamProgram Processed 104,000,000 records. Elapsed time: 00:19:33s. Time for last 1,000,000: 23s. Last read position: chr2:240,462,289 INFO 2026-06-03 20:46:56 SinglePassSamProgram Processed 105,000,000 records. Elapsed time: 00:19:50s. Time for last 1,000,000: 16s. Last read position: chr2:241,719,935 INFO 2026-06-03 20:47:18 SinglePassSamProgram Processed 106,000,000 records. Elapsed time: 00:20:11s. Time for last 1,000,000: 21s. Last read position: chr3:9,930,075 INFO 2026-06-03 20:47:28 SinglePassSamProgram Processed 107,000,000 records. Elapsed time: 00:20:21s. Time for last 1,000,000: 9s. Last read position: chr3:14,402,748 INFO 2026-06-03 20:47:37 SinglePassSamProgram Processed 108,000,000 records. Elapsed time: 00:20:30s. Time for last 1,000,000: 9s. Last read position: chr3:30,671,975 INFO 2026-06-03 20:47:48 SinglePassSamProgram Processed 109,000,000 records. Elapsed time: 00:20:41s. Time for last 1,000,000: 10s. Last read position: chr3:37,324,755 INFO 2026-06-03 20:47:59 SinglePassSamProgram Processed 110,000,000 records. Elapsed time: 00:20:52s. Time for last 1,000,000: 11s. Last read position: chr3:41,225,079 INFO 2026-06-03 20:48:21 SinglePassSamProgram Processed 111,000,000 records. Elapsed time: 00:21:14s. Time for last 1,000,000: 22s. Last read position: chr3:45,676,945 INFO 2026-06-03 20:48:32 SinglePassSamProgram Processed 112,000,000 records. Elapsed time: 00:21:25s. Time for last 1,000,000: 10s. Last read position: chr3:47,852,851 INFO 2026-06-03 20:48:46 SinglePassSamProgram Processed 113,000,000 records. Elapsed time: 00:21:40s. Time for last 1,000,000: 14s. Last read position: chr3:48,628,451 INFO 2026-06-03 20:49:00 SinglePassSamProgram Processed 114,000,000 records. Elapsed time: 00:21:53s. Time for last 1,000,000: 13s. Last read position: chr3:49,132,371 INFO 2026-06-03 20:49:09 SinglePassSamProgram Processed 115,000,000 records. Elapsed time: 00:22:02s. Time for last 1,000,000: 9s. Last read position: chr3:49,902,667 INFO 2026-06-03 20:49:20 SinglePassSamProgram Processed 116,000,000 records. Elapsed time: 00:22:14s. Time for last 1,000,000: 11s. Last read position: chr3:51,414,816 INFO 2026-06-03 20:49:30 SinglePassSamProgram Processed 117,000,000 records. Elapsed time: 00:22:23s. Time for last 1,000,000: 9s. Last read position: chr3:52,513,240 INFO 2026-06-03 20:49:42 SinglePassSamProgram Processed 118,000,000 records. Elapsed time: 00:22:36s. Time for last 1,000,000: 12s. Last read position: chr3:57,912,416 INFO 2026-06-03 20:50:00 SinglePassSamProgram Processed 119,000,000 records. Elapsed time: 00:22:54s. Time for last 1,000,000: 18s. Last read position: chr3:63,999,455 INFO 2026-06-03 20:50:15 SinglePassSamProgram Processed 120,000,000 records. Elapsed time: 00:23:08s. Time for last 1,000,000: 14s. Last read position: chr3:87,227,496 INFO 2026-06-03 20:50:28 SinglePassSamProgram Processed 121,000,000 records. Elapsed time: 00:23:21s. Time for last 1,000,000: 13s. Last read position: chr3:100,842,021 INFO 2026-06-03 20:50:37 SinglePassSamProgram Processed 122,000,000 records. Elapsed time: 00:23:30s. Time for last 1,000,000: 9s. Last read position: chr3:113,465,664 INFO 2026-06-03 20:50:44 SinglePassSamProgram Processed 123,000,000 records. Elapsed time: 00:23:37s. Time for last 1,000,000: 6s. Last read position: chr3:122,536,071 INFO 2026-06-03 20:50:55 SinglePassSamProgram Processed 124,000,000 records. Elapsed time: 00:23:48s. Time for last 1,000,000: 11s. Last read position: chr3:124,712,936 INFO 2026-06-03 20:51:01 SinglePassSamProgram Processed 125,000,000 records. Elapsed time: 00:23:54s. Time for last 1,000,000: 5s. Last read position: chr3:128,065,001 INFO 2026-06-03 20:51:09 SinglePassSamProgram Processed 126,000,000 records. Elapsed time: 00:24:03s. Time for last 1,000,000: 8s. Last read position: chr3:130,932,112 INFO 2026-06-03 20:51:23 SinglePassSamProgram Processed 127,000,000 records. Elapsed time: 00:24:16s. Time for last 1,000,000: 13s. Last read position: chr3:139,379,046 INFO 2026-06-03 20:51:32 SinglePassSamProgram Processed 128,000,000 records. Elapsed time: 00:24:25s. Time for last 1,000,000: 9s. Last read position: chr3:149,657,085 INFO 2026-06-03 20:51:41 SinglePassSamProgram Processed 129,000,000 records. Elapsed time: 00:24:34s. Time for last 1,000,000: 9s. Last read position: chr3:165,007,939 INFO 2026-06-03 20:51:50 SinglePassSamProgram Processed 130,000,000 records. Elapsed time: 00:24:43s. Time for last 1,000,000: 8s. Last read position: chr3:179,221,018 INFO 2026-06-03 20:52:03 SinglePassSamProgram Processed 131,000,000 records. Elapsed time: 00:24:57s. Time for last 1,000,000: 13s. Last read position: chr3:184,321,416 INFO 2026-06-03 20:52:22 SinglePassSamProgram Processed 132,000,000 records. Elapsed time: 00:25:15s. Time for last 1,000,000: 18s. Last read position: chr3:188,406,268 INFO 2026-06-03 20:52:33 SinglePassSamProgram Processed 133,000,000 records. Elapsed time: 00:25:26s. Time for last 1,000,000: 11s. Last read position: chr3:195,524,837 INFO 2026-06-03 20:52:51 SinglePassSamProgram Processed 134,000,000 records. Elapsed time: 00:25:44s. Time for last 1,000,000: 18s. Last read position: chr3:195,778,947 INFO 2026-06-03 20:53:10 SinglePassSamProgram Processed 135,000,000 records. Elapsed time: 00:26:03s. Time for last 1,000,000: 18s. Last read position: chr3:195,780,748 INFO 2026-06-03 20:53:35 SinglePassSamProgram Processed 136,000,000 records. Elapsed time: 00:26:29s. Time for last 1,000,000: 25s. Last read position: chr3:195,782,384 INFO 2026-06-03 20:53:59 SinglePassSamProgram Processed 137,000,000 records. Elapsed time: 00:26:52s. Time for last 1,000,000: 23s. Last read position: chr3:195,784,441 INFO 2026-06-03 20:54:31 SinglePassSamProgram Processed 138,000,000 records. Elapsed time: 00:27:24s. Time for last 1,000,000: 32s. Last read position: chr3:195,786,503 INFO 2026-06-03 20:55:00 SinglePassSamProgram Processed 139,000,000 records. Elapsed time: 00:27:53s. Time for last 1,000,000: 28s. Last read position: chr3:195,789,530 INFO 2026-06-03 20:55:32 SinglePassSamProgram Processed 140,000,000 records. Elapsed time: 00:28:25s. Time for last 1,000,000: 32s. Last read position: chr3:197,913,779 INFO 2026-06-03 20:55:42 SinglePassSamProgram Processed 141,000,000 records. Elapsed time: 00:28:35s. Time for last 1,000,000: 9s. Last read position: chr4:1,801,931 INFO 2026-06-03 20:55:59 SinglePassSamProgram Processed 142,000,000 records. Elapsed time: 00:28:53s. Time for last 1,000,000: 17s. Last read position: chr4:4,376,146 INFO 2026-06-03 20:56:07 SinglePassSamProgram Processed 143,000,000 records. Elapsed time: 00:29:00s. Time for last 1,000,000: 7s. Last read position: chr4:10,116,123 INFO 2026-06-03 20:56:16 SinglePassSamProgram Processed 144,000,000 records. Elapsed time: 00:29:09s. Time for last 1,000,000: 9s. Last read position: chr4:26,739,962 INFO 2026-06-03 20:56:24 SinglePassSamProgram Processed 145,000,000 records. Elapsed time: 00:29:17s. Time for last 1,000,000: 7s. Last read position: chr4:42,543,956 INFO 2026-06-03 20:56:34 SinglePassSamProgram Processed 146,000,000 records. Elapsed time: 00:29:27s. Time for last 1,000,000: 10s. Last read position: chr4:54,274,912 INFO 2026-06-03 20:56:42 SinglePassSamProgram Processed 147,000,000 records. Elapsed time: 00:29:35s. Time for last 1,000,000: 7s. Last read position: chr4:57,110,151 INFO 2026-06-03 20:56:51 SinglePassSamProgram Processed 148,000,000 records. Elapsed time: 00:29:44s. Time for last 1,000,000: 8s. Last read position: chr4:74,445,276 INFO 2026-06-03 20:57:00 SinglePassSamProgram Processed 149,000,000 records. Elapsed time: 00:29:54s. Time for last 1,000,000: 9s. Last read position: chr4:78,833,663 INFO 2026-06-03 20:57:25 SinglePassSamProgram Processed 150,000,000 records. Elapsed time: 00:30:18s. Time for last 1,000,000: 24s. Last read position: chr4:86,359,649 INFO 2026-06-03 20:57:35 SinglePassSamProgram Processed 151,000,000 records. Elapsed time: 00:30:28s. Time for last 1,000,000: 10s. Last read position: chr4:98,587,747 INFO 2026-06-03 20:57:44 SinglePassSamProgram Processed 152,000,000 records. Elapsed time: 00:30:37s. Time for last 1,000,000: 9s. Last read position: chr4:110,559,713 INFO 2026-06-03 20:58:17 SinglePassSamProgram Processed 153,000,000 records. Elapsed time: 00:31:10s. Time for last 1,000,000: 32s. Last read position: chr4:119,300,390 INFO 2026-06-03 20:58:29 SinglePassSamProgram Processed 154,000,000 records. Elapsed time: 00:31:22s. Time for last 1,000,000: 12s. Last read position: chr4:137,529,636 INFO 2026-06-03 20:58:36 SinglePassSamProgram Processed 155,000,000 records. Elapsed time: 00:31:30s. Time for last 1,000,000: 7s. Last read position: chr4:150,350,046 INFO 2026-06-03 20:58:57 SinglePassSamProgram Processed 156,000,000 records. Elapsed time: 00:31:50s. Time for last 1,000,000: 20s. Last read position: chr4:158,171,021 INFO 2026-06-03 20:59:06 SinglePassSamProgram Processed 157,000,000 records. Elapsed time: 00:31:59s. Time for last 1,000,000: 9s. Last read position: chr4:176,320,104 INFO 2026-06-03 20:59:15 SinglePassSamProgram Processed 158,000,000 records. Elapsed time: 00:32:08s. Time for last 1,000,000: 9s. Last read position: chr5:223,559 INFO 2026-06-03 20:59:23 SinglePassSamProgram Processed 159,000,000 records. Elapsed time: 00:32:16s. Time for last 1,000,000: 7s. Last read position: chr5:10,681,080 INFO 2026-06-03 20:59:46 SinglePassSamProgram Processed 160,000,000 records. Elapsed time: 00:32:39s. Time for last 1,000,000: 23s. Last read position: chr5:16,465,434 INFO 2026-06-03 20:59:57 SinglePassSamProgram Processed 161,000,000 records. Elapsed time: 00:32:50s. Time for last 1,000,000: 11s. Last read position: chr5:37,364,320 INFO 2026-06-03 21:00:04 SinglePassSamProgram Processed 162,000,000 records. Elapsed time: 00:32:57s. Time for last 1,000,000: 7s. Last read position: chr5:43,379,652 INFO 2026-06-03 21:00:14 SinglePassSamProgram Processed 163,000,000 records. Elapsed time: 00:33:07s. Time for last 1,000,000: 9s. Last read position: chr5:58,459,072 INFO 2026-06-03 21:00:25 SinglePassSamProgram Processed 164,000,000 records. Elapsed time: 00:33:18s. Time for last 1,000,000: 11s. Last read position: chr5:70,925,131 INFO 2026-06-03 21:00:34 SinglePassSamProgram Processed 165,000,000 records. Elapsed time: 00:33:27s. Time for last 1,000,000: 8s. Last read position: chr5:75,511,268 INFO 2026-06-03 21:00:42 SinglePassSamProgram Processed 166,000,000 records. Elapsed time: 00:33:35s. Time for last 1,000,000: 8s. Last read position: chr5:83,539,556 INFO 2026-06-03 21:01:11 SinglePassSamProgram Processed 167,000,000 records. Elapsed time: 00:34:04s. Time for last 1,000,000: 29s. Last read position: chr5:97,022,450 INFO 2026-06-03 21:01:19 SinglePassSamProgram Processed 168,000,000 records. Elapsed time: 00:34:12s. Time for last 1,000,000: 8s. Last read position: chr5:116,447,441 INFO 2026-06-03 21:01:32 SinglePassSamProgram Processed 169,000,000 records. Elapsed time: 00:34:25s. Time for last 1,000,000: 13s. Last read position: chr5:132,322,276 INFO 2026-06-03 21:01:39 SinglePassSamProgram Processed 170,000,000 records. Elapsed time: 00:34:33s. Time for last 1,000,000: 7s. Last read position: chr5:135,571,383 INFO 2026-06-03 21:01:50 SinglePassSamProgram Processed 171,000,000 records. Elapsed time: 00:34:43s. Time for last 1,000,000: 10s. Last read position: chr5:138,930,549 INFO 2026-06-03 21:02:00 SinglePassSamProgram Processed 172,000,000 records. Elapsed time: 00:34:53s. Time for last 1,000,000: 10s. Last read position: chr5:141,201,274 INFO 2026-06-03 21:02:06 SinglePassSamProgram Processed 173,000,000 records. Elapsed time: 00:34:59s. Time for last 1,000,000: 5s. Last read position: chr5:141,878,299 INFO 2026-06-03 21:02:17 SinglePassSamProgram Processed 174,000,000 records. Elapsed time: 00:35:10s. Time for last 1,000,000: 11s. Last read position: chr5:150,061,491 INFO 2026-06-03 21:02:24 SinglePassSamProgram Processed 175,000,000 records. Elapsed time: 00:35:17s. Time for last 1,000,000: 6s. Last read position: chr5:150,402,580 INFO 2026-06-03 21:02:32 SinglePassSamProgram Processed 176,000,000 records. Elapsed time: 00:35:25s. Time for last 1,000,000: 8s. Last read position: chr5:150,407,213 INFO 2026-06-03 21:02:40 SinglePassSamProgram Processed 177,000,000 records. Elapsed time: 00:35:33s. Time for last 1,000,000: 7s. Last read position: chr5:151,671,652 INFO 2026-06-03 21:02:49 SinglePassSamProgram Processed 178,000,000 records. Elapsed time: 00:35:42s. Time for last 1,000,000: 9s. Last read position: chr5:163,814,744 INFO 2026-06-03 21:03:02 SinglePassSamProgram Processed 179,000,000 records. Elapsed time: 00:35:56s. Time for last 1,000,000: 13s. Last read position: chr5:172,924,036 INFO 2026-06-03 21:03:10 SinglePassSamProgram Processed 180,000,000 records. Elapsed time: 00:36:03s. Time for last 1,000,000: 7s. Last read position: chr5:177,332,117 INFO 2026-06-03 21:03:19 SinglePassSamProgram Processed 181,000,000 records. Elapsed time: 00:36:12s. Time for last 1,000,000: 9s. Last read position: chr5:179,621,309 INFO 2026-06-03 21:03:40 SinglePassSamProgram Processed 182,000,000 records. Elapsed time: 00:36:33s. Time for last 1,000,000: 21s. Last read position: chr5:179,833,669 INFO 2026-06-03 21:03:49 SinglePassSamProgram Processed 183,000,000 records. Elapsed time: 00:36:42s. Time for last 1,000,000: 9s. Last read position: chr6:1,389,903 INFO 2026-06-03 21:03:55 SinglePassSamProgram Processed 184,000,000 records. Elapsed time: 00:36:48s. Time for last 1,000,000: 5s. Last read position: chr6:7,226,592 INFO 2026-06-03 21:04:02 SinglePassSamProgram Processed 185,000,000 records. Elapsed time: 00:36:56s. Time for last 1,000,000: 7s. Last read position: chr6:11,213,527 INFO 2026-06-03 21:04:10 SinglePassSamProgram Processed 186,000,000 records. Elapsed time: 00:37:03s. Time for last 1,000,000: 7s. Last read position: chr6:24,706,143 INFO 2026-06-03 21:04:13 SinglePassSamProgram Processed 187,000,000 records. Elapsed time: 00:37:07s. Time for last 1,000,000: 3s. Last read position: chr6:27,808,311 INFO 2026-06-03 21:04:18 SinglePassSamProgram Processed 188,000,000 records. Elapsed time: 00:37:11s. Time for last 1,000,000: 4s. Last read position: chr6:30,071,640 INFO 2026-06-03 21:04:24 SinglePassSamProgram Processed 189,000,000 records. Elapsed time: 00:37:17s. Time for last 1,000,000: 5s. Last read position: chr6:30,892,061 INFO 2026-06-03 21:04:34 SinglePassSamProgram Processed 190,000,000 records. Elapsed time: 00:37:27s. Time for last 1,000,000: 9s. Last read position: chr6:31,627,987 INFO 2026-06-03 21:04:45 SinglePassSamProgram Processed 191,000,000 records. Elapsed time: 00:37:38s. Time for last 1,000,000: 11s. Last read position: chr6:31,816,415 INFO 2026-06-03 21:04:50 SinglePassSamProgram Processed 192,000,000 records. Elapsed time: 00:37:43s. Time for last 1,000,000: 4s. Last read position: chr6:31,934,268 INFO 2026-06-03 21:05:01 SinglePassSamProgram Processed 193,000,000 records. Elapsed time: 00:37:55s. Time for last 1,000,000: 11s. Last read position: chr6:32,067,812 INFO 2026-06-03 21:05:16 SinglePassSamProgram Processed 194,000,000 records. Elapsed time: 00:38:09s. Time for last 1,000,000: 14s. Last read position: chr6:32,443,809 INFO 2026-06-03 21:05:23 SinglePassSamProgram Processed 195,000,000 records. Elapsed time: 00:38:16s. Time for last 1,000,000: 6s. Last read position: chr6:33,201,605 INFO 2026-06-03 21:05:30 SinglePassSamProgram Processed 196,000,000 records. Elapsed time: 00:38:23s. Time for last 1,000,000: 7s. Last read position: chr6:33,667,126 INFO 2026-06-03 21:05:37 SinglePassSamProgram Processed 197,000,000 records. Elapsed time: 00:38:31s. Time for last 1,000,000: 7s. Last read position: chr6:36,322,394 INFO 2026-06-03 21:05:43 SinglePassSamProgram Processed 198,000,000 records. Elapsed time: 00:38:36s. Time for last 1,000,000: 5s. Last read position: chr6:42,564,349 INFO 2026-06-03 21:05:53 SinglePassSamProgram Processed 199,000,000 records. Elapsed time: 00:38:46s. Time for last 1,000,000: 9s. Last read position: chr6:44,082,743 INFO 2026-06-03 21:06:00 SinglePassSamProgram Processed 200,000,000 records. Elapsed time: 00:38:53s. Time for last 1,000,000: 7s. Last read position: chr6:52,509,528 INFO 2026-06-03 21:06:50 SinglePassSamProgram Processed 201,000,000 records. Elapsed time: 00:39:43s. Time for last 1,000,000: 50s. Last read position: chr6:56,601,463 INFO 2026-06-03 21:07:49 SinglePassSamProgram Processed 202,000,000 records. Elapsed time: 00:40:42s. Time for last 1,000,000: 59s. Last read position: chr6:73,518,735 INFO 2026-06-03 21:08:04 SinglePassSamProgram Processed 203,000,000 records. Elapsed time: 00:40:58s. Time for last 1,000,000: 15s. Last read position: chr6:85,574,317 INFO 2026-06-03 21:08:13 SinglePassSamProgram Processed 204,000,000 records. Elapsed time: 00:41:06s. Time for last 1,000,000: 8s. Last read position: chr6:105,397,876 INFO 2026-06-03 21:08:22 SinglePassSamProgram Processed 205,000,000 records. Elapsed time: 00:41:15s. Time for last 1,000,000: 8s. Last read position: chr6:111,694,679 INFO 2026-06-03 21:08:32 SinglePassSamProgram Processed 206,000,000 records. Elapsed time: 00:41:26s. Time for last 1,000,000: 10s. Last read position: chr6:119,348,624 INFO 2026-06-03 21:08:46 SinglePassSamProgram Processed 207,000,000 records. Elapsed time: 00:41:39s. Time for last 1,000,000: 13s. Last read position: chr6:132,374,729 INFO 2026-06-03 21:09:01 SinglePassSamProgram Processed 208,000,000 records. Elapsed time: 00:41:54s. Time for last 1,000,000: 14s. Last read position: chr6:138,905,053 INFO 2026-06-03 21:09:10 SinglePassSamProgram Processed 209,000,000 records. Elapsed time: 00:42:03s. Time for last 1,000,000: 8s. Last read position: chr6:149,378,671 INFO 2026-06-03 21:09:33 SinglePassSamProgram Processed 210,000,000 records. Elapsed time: 00:42:26s. Time for last 1,000,000: 23s. Last read position: chr6:154,450,133 INFO 2026-06-03 21:09:44 SinglePassSamProgram Processed 211,000,000 records. Elapsed time: 00:42:37s. Time for last 1,000,000: 11s. Last read position: chr6:158,783,651 INFO 2026-06-03 21:09:55 SinglePassSamProgram Processed 212,000,000 records. Elapsed time: 00:42:48s. Time for last 1,000,000: 10s. Last read position: chr6:163,563,674 INFO 2026-06-03 21:10:07 SinglePassSamProgram Processed 213,000,000 records. Elapsed time: 00:43:01s. Time for last 1,000,000: 12s. Last read position: chr7:849,574 INFO 2026-06-03 21:10:17 SinglePassSamProgram Processed 214,000,000 records. Elapsed time: 00:43:11s. Time for last 1,000,000: 9s. Last read position: chr7:4,762,217 INFO 2026-06-03 21:10:25 SinglePassSamProgram Processed 215,000,000 records. Elapsed time: 00:43:18s. Time for last 1,000,000: 7s. Last read position: chr7:5,528,036 INFO 2026-06-03 21:10:35 SinglePassSamProgram Processed 216,000,000 records. Elapsed time: 00:43:29s. Time for last 1,000,000: 10s. Last read position: chr7:5,529,645 INFO 2026-06-03 21:10:42 SinglePassSamProgram Processed 217,000,000 records. Elapsed time: 00:43:35s. Time for last 1,000,000: 6s. Last read position: chr7:16,792,924 INFO 2026-06-03 21:10:56 SinglePassSamProgram Processed 218,000,000 records. Elapsed time: 00:43:50s. Time for last 1,000,000: 14s. Last read position: chr7:26,197,641 INFO 2026-06-03 21:11:08 SinglePassSamProgram Processed 219,000,000 records. Elapsed time: 00:44:01s. Time for last 1,000,000: 11s. Last read position: chr7:36,673,993 INFO 2026-06-03 21:11:15 SinglePassSamProgram Processed 220,000,000 records. Elapsed time: 00:44:09s. Time for last 1,000,000: 7s. Last read position: chr7:44,112,182 INFO 2026-06-03 21:11:24 SinglePassSamProgram Processed 221,000,000 records. Elapsed time: 00:44:17s. Time for last 1,000,000: 8s. Last read position: chr7:47,413,940 INFO 2026-06-03 21:11:33 SinglePassSamProgram Processed 222,000,000 records. Elapsed time: 00:44:27s. Time for last 1,000,000: 9s. Last read position: chr7:65,970,338 INFO 2026-06-03 21:11:39 SinglePassSamProgram Processed 223,000,000 records. Elapsed time: 00:44:32s. Time for last 1,000,000: 5s. Last read position: chr7:73,489,274 INFO 2026-06-03 21:11:51 SinglePassSamProgram Processed 224,000,000 records. Elapsed time: 00:44:44s. Time for last 1,000,000: 12s. Last read position: chr7:75,148,976 INFO 2026-06-03 21:11:57 SinglePassSamProgram Processed 225,000,000 records. Elapsed time: 00:44:50s. Time for last 1,000,000: 5s. Last read position: chr7:76,480,512 INFO 2026-06-03 21:12:04 SinglePassSamProgram Processed 226,000,000 records. Elapsed time: 00:44:58s. Time for last 1,000,000: 7s. Last read position: chr7:87,907,244 INFO 2026-06-03 21:12:59 SinglePassSamProgram Processed 227,000,000 records. Elapsed time: 00:45:52s. Time for last 1,000,000: 54s. Last read position: chr7:93,134,595 INFO 2026-06-03 21:13:13 SinglePassSamProgram Processed 228,000,000 records. Elapsed time: 00:46:06s. Time for last 1,000,000: 13s. Last read position: chr7:98,293,398 INFO 2026-06-03 21:13:27 SinglePassSamProgram Processed 229,000,000 records. Elapsed time: 00:46:20s. Time for last 1,000,000: 13s. Last read position: chr7:100,096,032 INFO 2026-06-03 21:13:35 SinglePassSamProgram Processed 230,000,000 records. Elapsed time: 00:46:28s. Time for last 1,000,000: 8s. Last read position: chr7:100,884,537 INFO 2026-06-03 21:13:38 SinglePassSamProgram Processed 231,000,000 records. Elapsed time: 00:46:31s. Time for last 1,000,000: 3s. Last read position: chr7:100,959,619 INFO 2026-06-03 21:13:41 SinglePassSamProgram Processed 232,000,000 records. Elapsed time: 00:46:34s. Time for last 1,000,000: 2s. Last read position: chr7:100,991,736 INFO 2026-06-03 21:13:44 SinglePassSamProgram Processed 233,000,000 records. Elapsed time: 00:46:37s. Time for last 1,000,000: 2s. Last read position: chr7:100,992,601 INFO 2026-06-03 21:13:46 SinglePassSamProgram Processed 234,000,000 records. Elapsed time: 00:46:39s. Time for last 1,000,000: 2s. Last read position: chr7:100,992,978 INFO 2026-06-03 21:13:47 SinglePassSamProgram Processed 235,000,000 records. Elapsed time: 00:46:41s. Time for last 1,000,000: 1s. Last read position: chr7:100,993,321 INFO 2026-06-03 21:13:49 SinglePassSamProgram Processed 236,000,000 records. Elapsed time: 00:46:42s. Time for last 1,000,000: 1s. Last read position: chr7:100,993,641 INFO 2026-06-03 21:13:49 SinglePassSamProgram Processed 237,000,000 records. Elapsed time: 00:46:43s. Time for last 1,000,000: 0s. Last read position: chr7:100,993,800 INFO 2026-06-03 21:13:51 SinglePassSamProgram Processed 238,000,000 records. Elapsed time: 00:46:44s. Time for last 1,000,000: 1s. Last read position: chr7:100,994,145 INFO 2026-06-03 21:13:52 SinglePassSamProgram Processed 239,000,000 records. Elapsed time: 00:46:45s. Time for last 1,000,000: 1s. Last read position: chr7:100,994,645 INFO 2026-06-03 21:13:53 SinglePassSamProgram Processed 240,000,000 records. Elapsed time: 00:46:46s. Time for last 1,000,000: 0s. Last read position: chr7:100,994,915 INFO 2026-06-03 21:13:54 SinglePassSamProgram Processed 241,000,000 records. Elapsed time: 00:46:47s. Time for last 1,000,000: 0s. Last read position: chr7:100,995,142 INFO 2026-06-03 21:13:55 SinglePassSamProgram Processed 242,000,000 records. Elapsed time: 00:46:48s. Time for last 1,000,000: 1s. Last read position: chr7:100,995,499 INFO 2026-06-03 21:13:56 SinglePassSamProgram Processed 243,000,000 records. Elapsed time: 00:46:49s. Time for last 1,000,000: 1s. Last read position: chr7:100,996,035 INFO 2026-06-03 21:13:57 SinglePassSamProgram Processed 244,000,000 records. Elapsed time: 00:46:50s. Time for last 1,000,000: 0s. Last read position: chr7:100,996,225 INFO 2026-06-03 21:13:58 SinglePassSamProgram Processed 245,000,000 records. Elapsed time: 00:46:51s. Time for last 1,000,000: 0s. Last read position: chr7:100,996,388 INFO 2026-06-03 21:13:59 SinglePassSamProgram Processed 246,000,000 records. Elapsed time: 00:46:52s. Time for last 1,000,000: 1s. Last read position: chr7:100,996,535 INFO 2026-06-03 21:14:01 SinglePassSamProgram Processed 247,000,000 records. Elapsed time: 00:46:55s. Time for last 1,000,000: 2s. Last read position: chr7:100,996,807 INFO 2026-06-03 21:14:04 SinglePassSamProgram Processed 248,000,000 records. Elapsed time: 00:46:57s. Time for last 1,000,000: 2s. Last read position: chr7:100,996,928 INFO 2026-06-03 21:14:06 SinglePassSamProgram Processed 249,000,000 records. Elapsed time: 00:47:00s. Time for last 1,000,000: 2s. Last read position: chr7:100,997,137 INFO 2026-06-03 21:14:09 SinglePassSamProgram Processed 250,000,000 records. Elapsed time: 00:47:02s. Time for last 1,000,000: 2s. Last read position: chr7:100,997,386 INFO 2026-06-03 21:14:11 SinglePassSamProgram Processed 251,000,000 records. Elapsed time: 00:47:04s. Time for last 1,000,000: 2s. Last read position: chr7:100,997,552 INFO 2026-06-03 21:14:13 SinglePassSamProgram Processed 252,000,000 records. Elapsed time: 00:47:06s. Time for last 1,000,000: 1s. Last read position: chr7:100,997,849 INFO 2026-06-03 21:14:14 SinglePassSamProgram Processed 253,000,000 records. Elapsed time: 00:47:07s. Time for last 1,000,000: 1s. Last read position: chr7:100,998,007 INFO 2026-06-03 21:14:16 SinglePassSamProgram Processed 254,000,000 records. Elapsed time: 00:47:09s. Time for last 1,000,000: 1s. Last read position: chr7:100,998,226 INFO 2026-06-03 21:14:16 SinglePassSamProgram Processed 255,000,000 records. Elapsed time: 00:47:09s. Time for last 1,000,000: 0s. Last read position: chr7:100,998,350 INFO 2026-06-03 21:14:17 SinglePassSamProgram Processed 256,000,000 records. Elapsed time: 00:47:10s. Time for last 1,000,000: 0s. Last read position: chr7:100,998,563 INFO 2026-06-03 21:14:18 SinglePassSamProgram Processed 257,000,000 records. Elapsed time: 00:47:11s. Time for last 1,000,000: 1s. Last read position: chr7:100,998,689 INFO 2026-06-03 21:14:19 SinglePassSamProgram Processed 258,000,000 records. Elapsed time: 00:47:13s. Time for last 1,000,000: 1s. Last read position: chr7:100,998,893 INFO 2026-06-03 21:14:20 SinglePassSamProgram Processed 259,000,000 records. Elapsed time: 00:47:13s. Time for last 1,000,000: 0s. Last read position: chr7:100,999,060 INFO 2026-06-03 21:14:22 SinglePassSamProgram Processed 260,000,000 records. Elapsed time: 00:47:15s. Time for last 1,000,000: 2s. Last read position: chr7:100,999,495 INFO 2026-06-03 21:14:24 SinglePassSamProgram Processed 261,000,000 records. Elapsed time: 00:47:17s. Time for last 1,000,000: 1s. Last read position: chr7:100,999,722 INFO 2026-06-03 21:14:26 SinglePassSamProgram Processed 262,000,000 records. Elapsed time: 00:47:19s. Time for last 1,000,000: 1s. Last read position: chr7:100,999,957 INFO 2026-06-03 21:14:28 SinglePassSamProgram Processed 263,000,000 records. Elapsed time: 00:47:21s. Time for last 1,000,000: 2s. Last read position: chr7:101,000,243 INFO 2026-06-03 21:14:30 SinglePassSamProgram Processed 264,000,000 records. Elapsed time: 00:47:23s. Time for last 1,000,000: 1s. Last read position: chr7:101,000,499 INFO 2026-06-03 21:14:31 SinglePassSamProgram Processed 265,000,000 records. Elapsed time: 00:47:25s. Time for last 1,000,000: 1s. Last read position: chr7:101,000,757 INFO 2026-06-03 21:14:34 SinglePassSamProgram Processed 266,000,000 records. Elapsed time: 00:47:27s. Time for last 1,000,000: 2s. Last read position: chr7:101,000,969 INFO 2026-06-03 21:14:36 SinglePassSamProgram Processed 267,000,000 records. Elapsed time: 00:47:29s. Time for last 1,000,000: 1s. Last read position: chr7:101,001,209 INFO 2026-06-03 21:14:38 SinglePassSamProgram Processed 268,000,000 records. Elapsed time: 00:47:31s. Time for last 1,000,000: 1s. Last read position: chr7:101,001,362 INFO 2026-06-03 21:14:38 SinglePassSamProgram Processed 269,000,000 records. Elapsed time: 00:47:31s. Time for last 1,000,000: 0s. Last read position: chr7:101,001,540 INFO 2026-06-03 21:14:39 SinglePassSamProgram Processed 270,000,000 records. Elapsed time: 00:47:32s. Time for last 1,000,000: 0s. Last read position: chr7:101,001,689 INFO 2026-06-03 21:14:39 SinglePassSamProgram Processed 271,000,000 records. Elapsed time: 00:47:33s. Time for last 1,000,000: 0s. Last read position: chr7:101,001,870 INFO 2026-06-03 21:14:40 SinglePassSamProgram Processed 272,000,000 records. Elapsed time: 00:47:33s. Time for last 1,000,000: 0s. Last read position: chr7:101,002,289 INFO 2026-06-03 21:14:42 SinglePassSamProgram Processed 273,000,000 records. Elapsed time: 00:47:35s. Time for last 1,000,000: 1s. Last read position: chr7:101,002,536 INFO 2026-06-03 21:14:44 SinglePassSamProgram Processed 274,000,000 records. Elapsed time: 00:47:37s. Time for last 1,000,000: 1s. Last read position: chr7:101,002,946 INFO 2026-06-03 21:14:46 SinglePassSamProgram Processed 275,000,000 records. Elapsed time: 00:47:39s. Time for last 1,000,000: 2s. Last read position: chr7:101,003,545 INFO 2026-06-03 21:14:47 SinglePassSamProgram Processed 276,000,000 records. Elapsed time: 00:47:40s. Time for last 1,000,000: 0s. Last read position: chr7:101,003,969 INFO 2026-06-03 21:14:48 SinglePassSamProgram Processed 277,000,000 records. Elapsed time: 00:47:41s. Time for last 1,000,000: 1s. Last read position: chr7:101,004,338 INFO 2026-06-03 21:14:52 SinglePassSamProgram Processed 278,000,000 records. Elapsed time: 00:47:45s. Time for last 1,000,000: 3s. Last read position: chr7:101,031,636 INFO 2026-06-03 21:14:54 SinglePassSamProgram Processed 279,000,000 records. Elapsed time: 00:47:47s. Time for last 1,000,000: 2s. Last read position: chr7:101,088,620 INFO 2026-06-03 21:15:02 SinglePassSamProgram Processed 280,000,000 records. Elapsed time: 00:47:55s. Time for last 1,000,000: 7s. Last read position: chr7:102,655,121 INFO 2026-06-03 21:15:12 SinglePassSamProgram Processed 281,000,000 records. Elapsed time: 00:48:06s. Time for last 1,000,000: 10s. Last read position: chr7:107,787,378 INFO 2026-06-03 21:15:41 SinglePassSamProgram Processed 282,000,000 records. Elapsed time: 00:48:34s. Time for last 1,000,000: 28s. Last read position: chr7:116,906,288 INFO 2026-06-03 21:16:02 SinglePassSamProgram Processed 283,000,000 records. Elapsed time: 00:48:55s. Time for last 1,000,000: 20s. Last read position: chr7:127,698,884 INFO 2026-06-03 21:16:10 SinglePassSamProgram Processed 284,000,000 records. Elapsed time: 00:49:03s. Time for last 1,000,000: 7s. Last read position: chr7:128,858,134 INFO 2026-06-03 21:16:19 SinglePassSamProgram Processed 285,000,000 records. Elapsed time: 00:49:12s. Time for last 1,000,000: 9s. Last read position: chr7:135,929,846 INFO 2026-06-03 21:16:26 SinglePassSamProgram Processed 286,000,000 records. Elapsed time: 00:49:19s. Time for last 1,000,000: 6s. Last read position: chr7:140,702,881 INFO 2026-06-03 21:16:33 SinglePassSamProgram Processed 287,000,000 records. Elapsed time: 00:49:26s. Time for last 1,000,000: 7s. Last read position: chr7:144,299,431 INFO 2026-06-03 21:16:38 SinglePassSamProgram Processed 288,000,000 records. Elapsed time: 00:49:31s. Time for last 1,000,000: 5s. Last read position: chr7:150,803,418 INFO 2026-06-03 21:16:49 SinglePassSamProgram Processed 289,000,000 records. Elapsed time: 00:49:43s. Time for last 1,000,000: 11s. Last read position: chr7:152,177,269 INFO 2026-06-03 21:17:06 SinglePassSamProgram Processed 290,000,000 records. Elapsed time: 00:50:00s. Time for last 1,000,000: 17s. Last read position: chr8:8,319,025 INFO 2026-06-03 21:17:22 SinglePassSamProgram Processed 291,000,000 records. Elapsed time: 00:50:15s. Time for last 1,000,000: 15s. Last read position: chr8:17,754,678 INFO 2026-06-03 21:17:36 SinglePassSamProgram Processed 292,000,000 records. Elapsed time: 00:50:29s. Time for last 1,000,000: 13s. Last read position: chr8:22,606,105 INFO 2026-06-03 21:17:45 SinglePassSamProgram Processed 293,000,000 records. Elapsed time: 00:50:38s. Time for last 1,000,000: 8s. Last read position: chr8:26,653,339 INFO 2026-06-03 21:17:53 SinglePassSamProgram Processed 294,000,000 records. Elapsed time: 00:50:46s. Time for last 1,000,000: 8s. Last read position: chr8:30,799,693 INFO 2026-06-03 21:18:09 SinglePassSamProgram Processed 295,000,000 records. Elapsed time: 00:51:02s. Time for last 1,000,000: 15s. Last read position: chr8:38,267,361 INFO 2026-06-03 21:18:35 SinglePassSamProgram Processed 296,000,000 records. Elapsed time: 00:51:28s. Time for last 1,000,000: 25s. Last read position: chr8:39,055,635 INFO 2026-06-03 21:18:53 SinglePassSamProgram Processed 297,000,000 records. Elapsed time: 00:51:46s. Time for last 1,000,000: 18s. Last read position: chr8:47,737,631 INFO 2026-06-03 21:19:02 SinglePassSamProgram Processed 298,000,000 records. Elapsed time: 00:51:55s. Time for last 1,000,000: 9s. Last read position: chr8:61,578,196 INFO 2026-06-03 21:19:14 SinglePassSamProgram Processed 299,000,000 records. Elapsed time: 00:52:08s. Time for last 1,000,000: 12s. Last read position: chr8:73,291,171 INFO 2026-06-03 21:19:25 SinglePassSamProgram Processed 300,000,000 records. Elapsed time: 00:52:18s. Time for last 1,000,000: 10s. Last read position: chr8:86,547,711 INFO 2026-06-03 21:19:34 SinglePassSamProgram Processed 301,000,000 records. Elapsed time: 00:52:27s. Time for last 1,000,000: 9s. Last read position: chr8:98,027,514 INFO 2026-06-03 21:20:02 SinglePassSamProgram Processed 302,000,000 records. Elapsed time: 00:52:55s. Time for last 1,000,000: 27s. Last read position: chr8:102,651,588 INFO 2026-06-03 21:20:22 SinglePassSamProgram Processed 303,000,000 records. Elapsed time: 00:53:15s. Time for last 1,000,000: 20s. Last read position: chr8:120,515,930 INFO 2026-06-03 21:20:40 SinglePassSamProgram Processed 304,000,000 records. Elapsed time: 00:53:33s. Time for last 1,000,000: 17s. Last read position: chr8:140,275,777 INFO 2026-06-03 21:21:05 SinglePassSamProgram Processed 305,000,000 records. Elapsed time: 00:53:58s. Time for last 1,000,000: 25s. Last read position: chr8:143,730,536 INFO 2026-06-03 21:21:12 SinglePassSamProgram Processed 306,000,000 records. Elapsed time: 00:54:05s. Time for last 1,000,000: 6s. Last read position: chr8:143,861,478 INFO 2026-06-03 21:21:13 SinglePassSamProgram Processed 307,000,000 records. Elapsed time: 00:54:07s. Time for last 1,000,000: 1s. Last read position: chr8:143,866,084 INFO 2026-06-03 21:21:22 SinglePassSamProgram Processed 308,000,000 records. Elapsed time: 00:54:15s. Time for last 1,000,000: 8s. Last read position: chr8:143,920,932 INFO 2026-06-03 21:21:43 SinglePassSamProgram Processed 309,000,000 records. Elapsed time: 00:54:36s. Time for last 1,000,000: 21s. Last read position: chr8:143,934,397 INFO 2026-06-03 21:22:14 SinglePassSamProgram Processed 310,000,000 records. Elapsed time: 00:55:07s. Time for last 1,000,000: 30s. Last read position: chr8:144,409,512 INFO 2026-06-03 21:22:35 SinglePassSamProgram Processed 311,000,000 records. Elapsed time: 00:55:28s. Time for last 1,000,000: 21s. Last read position: chr9:5,086,109 INFO 2026-06-03 21:22:59 SinglePassSamProgram Processed 312,000,000 records. Elapsed time: 00:55:52s. Time for last 1,000,000: 23s. Last read position: chr9:19,050,122 INFO 2026-06-03 21:23:12 SinglePassSamProgram Processed 313,000,000 records. Elapsed time: 00:56:05s. Time for last 1,000,000: 13s. Last read position: chr9:33,278,171 INFO 2026-06-03 21:23:34 SinglePassSamProgram Processed 314,000,000 records. Elapsed time: 00:56:27s. Time for last 1,000,000: 21s. Last read position: chr9:35,403,210 INFO 2026-06-03 21:23:48 SinglePassSamProgram Processed 315,000,000 records. Elapsed time: 00:56:41s. Time for last 1,000,000: 13s. Last read position: chr9:35,725,241 INFO 2026-06-03 21:23:58 SinglePassSamProgram Processed 316,000,000 records. Elapsed time: 00:56:51s. Time for last 1,000,000: 9s. Last read position: chr9:63,372,793 INFO 2026-06-03 21:24:14 SinglePassSamProgram Processed 317,000,000 records. Elapsed time: 00:57:07s. Time for last 1,000,000: 16s. Last read position: chr9:76,107,276 INFO 2026-06-03 21:24:38 SinglePassSamProgram Processed 318,000,000 records. Elapsed time: 00:57:31s. Time for last 1,000,000: 23s. Last read position: chr9:86,033,321 INFO 2026-06-03 21:24:58 SinglePassSamProgram Processed 319,000,000 records. Elapsed time: 00:57:51s. Time for last 1,000,000: 20s. Last read position: chr9:93,268,692 INFO 2026-06-03 21:25:14 SinglePassSamProgram Processed 320,000,000 records. Elapsed time: 00:58:07s. Time for last 1,000,000: 16s. Last read position: chr9:98,131,015 INFO 2026-06-03 21:25:25 SinglePassSamProgram Processed 321,000,000 records. Elapsed time: 00:58:19s. Time for last 1,000,000: 11s. Last read position: chr9:106,926,605 INFO 2026-06-03 21:25:47 SinglePassSamProgram Processed 322,000,000 records. Elapsed time: 00:58:40s. Time for last 1,000,000: 21s. Last read position: chr9:112,080,102 INFO 2026-06-03 21:26:07 SinglePassSamProgram Processed 323,000,000 records. Elapsed time: 00:59:01s. Time for last 1,000,000: 20s. Last read position: chr9:116,302,723 INFO 2026-06-03 21:26:32 SinglePassSamProgram Processed 324,000,000 records. Elapsed time: 00:59:25s. Time for last 1,000,000: 24s. Last read position: chr9:121,356,091 INFO 2026-06-03 21:26:44 SinglePassSamProgram Processed 325,000,000 records. Elapsed time: 00:59:37s. Time for last 1,000,000: 12s. Last read position: chr9:125,239,156 INFO 2026-06-03 21:27:03 SinglePassSamProgram Processed 326,000,000 records. Elapsed time: 00:59:56s. Time for last 1,000,000: 18s. Last read position: chr9:127,890,720 INFO 2026-06-03 21:27:22 SinglePassSamProgram Processed 327,000,000 records. Elapsed time: 01:00:15s. Time for last 1,000,000: 19s. Last read position: chr9:128,579,655 INFO 2026-06-03 21:28:02 SinglePassSamProgram Processed 328,000,000 records. Elapsed time: 01:00:56s. Time for last 1,000,000: 40s. Last read position: chr9:129,147,398 INFO 2026-06-03 21:28:15 SinglePassSamProgram Processed 329,000,000 records. Elapsed time: 01:01:09s. Time for last 1,000,000: 13s. Last read position: chr9:130,884,898 INFO 2026-06-03 21:28:33 SinglePassSamProgram Processed 330,000,000 records. Elapsed time: 01:01:26s. Time for last 1,000,000: 17s. Last read position: chr9:133,108,010 INFO 2026-06-03 21:28:44 SinglePassSamProgram Processed 331,000,000 records. Elapsed time: 01:01:37s. Time for last 1,000,000: 10s. Last read position: chr9:134,785,051 INFO 2026-06-03 21:29:09 SinglePassSamProgram Processed 332,000,000 records. Elapsed time: 01:02:02s. Time for last 1,000,000: 24s. Last read position: chr9:136,476,589 INFO 2026-06-03 21:29:28 SinglePassSamProgram Processed 333,000,000 records. Elapsed time: 01:02:21s. Time for last 1,000,000: 19s. Last read position: chr9:136,993,387 INFO 2026-06-03 21:29:37 SinglePassSamProgram Processed 334,000,000 records. Elapsed time: 01:02:30s. Time for last 1,000,000: 9s. Last read position: chr9:137,453,790 INFO 2026-06-03 21:29:58 SinglePassSamProgram Processed 335,000,000 records. Elapsed time: 01:02:51s. Time for last 1,000,000: 20s. Last read position: chr10:5,909,018 INFO 2026-06-03 21:30:06 SinglePassSamProgram Processed 336,000,000 records. Elapsed time: 01:02:59s. Time for last 1,000,000: 8s. Last read position: chr10:17,235,333 INFO 2026-06-03 21:30:30 SinglePassSamProgram Processed 337,000,000 records. Elapsed time: 01:03:23s. Time for last 1,000,000: 23s. Last read position: chr10:29,463,522 INFO 2026-06-03 21:30:41 SinglePassSamProgram Processed 338,000,000 records. Elapsed time: 01:03:34s. Time for last 1,000,000: 11s. Last read position: chr10:32,292,498 INFO 2026-06-03 21:31:05 SinglePassSamProgram Processed 339,000,000 records. Elapsed time: 01:03:58s. Time for last 1,000,000: 23s. Last read position: chr10:45,727,461 INFO 2026-06-03 21:31:11 SinglePassSamProgram Processed 340,000,000 records. Elapsed time: 01:04:04s. Time for last 1,000,000: 6s. Last read position: chr10:50,093,858 INFO 2026-06-03 21:31:25 SinglePassSamProgram Processed 341,000,000 records. Elapsed time: 01:04:18s. Time for last 1,000,000: 14s. Last read position: chr10:68,901,379 INFO 2026-06-03 21:31:38 SinglePassSamProgram Processed 342,000,000 records. Elapsed time: 01:04:32s. Time for last 1,000,000: 13s. Last read position: chr10:73,517,067 INFO 2026-06-03 21:32:13 SinglePassSamProgram Processed 343,000,000 records. Elapsed time: 01:05:07s. Time for last 1,000,000: 34s. Last read position: chr10:77,084,651 INFO 2026-06-03 21:32:56 SinglePassSamProgram Processed 344,000,000 records. Elapsed time: 01:05:49s. Time for last 1,000,000: 42s. Last read position: chr10:86,717,926 INFO 2026-06-03 21:33:01 SinglePassSamProgram Processed 345,000,000 records. Elapsed time: 01:05:55s. Time for last 1,000,000: 5s. Last read position: chr10:91,807,381 INFO 2026-06-03 21:33:24 SinglePassSamProgram Processed 346,000,000 records. Elapsed time: 01:06:18s. Time for last 1,000,000: 22s. Last read position: chr10:95,682,705 INFO 2026-06-03 21:33:34 SinglePassSamProgram Processed 347,000,000 records. Elapsed time: 01:06:28s. Time for last 1,000,000: 10s. Last read position: chr10:100,193,352 INFO 2026-06-03 21:33:58 SinglePassSamProgram Processed 348,000,000 records. Elapsed time: 01:06:52s. Time for last 1,000,000: 23s. Last read position: chr10:102,484,283 INFO 2026-06-03 21:34:09 SinglePassSamProgram Processed 349,000,000 records. Elapsed time: 01:07:02s. Time for last 1,000,000: 10s. Last read position: chr10:109,865,200 INFO 2026-06-03 21:34:22 SinglePassSamProgram Processed 350,000,000 records. Elapsed time: 01:07:15s. Time for last 1,000,000: 13s. Last read position: chr10:116,915,483 INFO 2026-06-03 21:34:35 SinglePassSamProgram Processed 351,000,000 records. Elapsed time: 01:07:28s. Time for last 1,000,000: 12s. Last read position: chr10:122,237,469 INFO 2026-06-03 21:35:00 SinglePassSamProgram Processed 352,000,000 records. Elapsed time: 01:07:53s. Time for last 1,000,000: 24s. Last read position: chr10:128,108,602 INFO 2026-06-03 21:35:10 SinglePassSamProgram Processed 353,000,000 records. Elapsed time: 01:08:04s. Time for last 1,000,000: 10s. Last read position: chr11:394,328 INFO 2026-06-03 21:35:22 SinglePassSamProgram Processed 354,000,000 records. Elapsed time: 01:08:15s. Time for last 1,000,000: 11s. Last read position: chr11:709,348 INFO 2026-06-03 21:35:38 SinglePassSamProgram Processed 355,000,000 records. Elapsed time: 01:08:31s. Time for last 1,000,000: 16s. Last read position: chr11:1,075,734 INFO 2026-06-03 21:35:44 SinglePassSamProgram Processed 356,000,000 records. Elapsed time: 01:08:37s. Time for last 1,000,000: 5s. Last read position: chr11:1,078,475 INFO 2026-06-03 21:35:53 SinglePassSamProgram Processed 357,000,000 records. Elapsed time: 01:08:47s. Time for last 1,000,000: 9s. Last read position: chr11:1,084,655 INFO 2026-06-03 21:36:03 SinglePassSamProgram Processed 358,000,000 records. Elapsed time: 01:08:56s. Time for last 1,000,000: 9s. Last read position: chr11:1,088,090 INFO 2026-06-03 21:36:19 SinglePassSamProgram Processed 359,000,000 records. Elapsed time: 01:09:12s. Time for last 1,000,000: 16s. Last read position: chr11:1,094,177 INFO 2026-06-03 21:36:27 SinglePassSamProgram Processed 360,000,000 records. Elapsed time: 01:09:20s. Time for last 1,000,000: 7s. Last read position: chr11:1,182,309 INFO 2026-06-03 21:36:31 SinglePassSamProgram Processed 361,000,000 records. Elapsed time: 01:09:24s. Time for last 1,000,000: 4s. Last read position: chr11:1,186,337 INFO 2026-06-03 21:36:36 SinglePassSamProgram Processed 362,000,000 records. Elapsed time: 01:09:30s. Time for last 1,000,000: 5s. Last read position: chr11:1,191,361 INFO 2026-06-03 21:36:43 SinglePassSamProgram Processed 363,000,000 records. Elapsed time: 01:09:36s. Time for last 1,000,000: 6s. Last read position: chr11:1,242,542 INFO 2026-06-03 21:36:49 SinglePassSamProgram Processed 364,000,000 records. Elapsed time: 01:09:42s. Time for last 1,000,000: 6s. Last read position: chr11:1,245,062 INFO 2026-06-03 21:36:56 SinglePassSamProgram Processed 365,000,000 records. Elapsed time: 01:09:50s. Time for last 1,000,000: 7s. Last read position: chr11:1,248,036 INFO 2026-06-03 21:37:07 SinglePassSamProgram Processed 366,000,000 records. Elapsed time: 01:10:00s. Time for last 1,000,000: 10s. Last read position: chr11:1,250,873 INFO 2026-06-03 21:37:17 SinglePassSamProgram Processed 367,000,000 records. Elapsed time: 01:10:10s. Time for last 1,000,000: 10s. Last read position: chr11:2,133,189 INFO 2026-06-03 21:37:27 SinglePassSamProgram Processed 368,000,000 records. Elapsed time: 01:10:20s. Time for last 1,000,000: 9s. Last read position: chr11:6,390,845 INFO 2026-06-03 21:37:39 SinglePassSamProgram Processed 369,000,000 records. Elapsed time: 01:10:32s. Time for last 1,000,000: 12s. Last read position: chr11:8,730,653 INFO 2026-06-03 21:37:58 SinglePassSamProgram Processed 370,000,000 records. Elapsed time: 01:10:51s. Time for last 1,000,000: 18s. Last read position: chr11:11,967,065 INFO 2026-06-03 21:38:07 SinglePassSamProgram Processed 371,000,000 records. Elapsed time: 01:11:01s. Time for last 1,000,000: 9s. Last read position: chr11:17,501,119 INFO 2026-06-03 21:38:18 SinglePassSamProgram Processed 372,000,000 records. Elapsed time: 01:11:11s. Time for last 1,000,000: 10s. Last read position: chr11:33,574,808 INFO 2026-06-03 21:38:26 SinglePassSamProgram Processed 373,000,000 records. Elapsed time: 01:11:19s. Time for last 1,000,000: 8s. Last read position: chr11:45,806,073 INFO 2026-06-03 21:38:34 SinglePassSamProgram Processed 374,000,000 records. Elapsed time: 01:11:27s. Time for last 1,000,000: 7s. Last read position: chr11:46,681,068 INFO 2026-06-03 21:38:44 SinglePassSamProgram Processed 375,000,000 records. Elapsed time: 01:11:38s. Time for last 1,000,000: 10s. Last read position: chr11:57,309,866 INFO 2026-06-03 21:39:07 SinglePassSamProgram Processed 376,000,000 records. Elapsed time: 01:12:00s. Time for last 1,000,000: 22s. Last read position: chr11:59,181,857 INFO 2026-06-03 21:39:18 SinglePassSamProgram Processed 377,000,000 records. Elapsed time: 01:12:11s. Time for last 1,000,000: 11s. Last read position: chr11:61,771,682 INFO 2026-06-03 21:39:24 SinglePassSamProgram Processed 378,000,000 records. Elapsed time: 01:12:17s. Time for last 1,000,000: 5s. Last read position: chr11:62,521,451 INFO 2026-06-03 21:39:28 SinglePassSamProgram Processed 379,000,000 records. Elapsed time: 01:12:21s. Time for last 1,000,000: 3s. Last read position: chr11:62,528,741 INFO 2026-06-03 21:39:32 SinglePassSamProgram Processed 380,000,000 records. Elapsed time: 01:12:25s. Time for last 1,000,000: 4s. Last read position: chr11:62,616,981 INFO 2026-06-03 21:39:43 SinglePassSamProgram Processed 381,000,000 records. Elapsed time: 01:12:36s. Time for last 1,000,000: 10s. Last read position: chr11:64,117,148 INFO 2026-06-03 21:39:52 SinglePassSamProgram Processed 382,000,000 records. Elapsed time: 01:12:45s. Time for last 1,000,000: 8s. Last read position: chr11:64,829,520 INFO 2026-06-03 21:40:00 SinglePassSamProgram Processed 383,000,000 records. Elapsed time: 01:12:53s. Time for last 1,000,000: 8s. Last read position: chr11:65,537,838 INFO 2026-06-03 21:40:10 SinglePassSamProgram Processed 384,000,000 records. Elapsed time: 01:13:03s. Time for last 1,000,000: 9s. Last read position: chr11:65,655,733 INFO 2026-06-03 21:40:19 SinglePassSamProgram Processed 385,000,000 records. Elapsed time: 01:13:12s. Time for last 1,000,000: 8s. Last read position: chr11:66,316,489 INFO 2026-06-03 21:40:29 SinglePassSamProgram Processed 386,000,000 records. Elapsed time: 01:13:22s. Time for last 1,000,000: 10s. Last read position: chr11:67,433,365 INFO 2026-06-03 21:40:36 SinglePassSamProgram Processed 387,000,000 records. Elapsed time: 01:13:29s. Time for last 1,000,000: 7s. Last read position: chr11:68,548,141 INFO 2026-06-03 21:40:46 SinglePassSamProgram Processed 388,000,000 records. Elapsed time: 01:13:39s. Time for last 1,000,000: 9s. Last read position: chr11:71,438,888 INFO 2026-06-03 21:41:07 SinglePassSamProgram Processed 389,000,000 records. Elapsed time: 01:14:01s. Time for last 1,000,000: 21s. Last read position: chr11:73,309,492 INFO 2026-06-03 21:41:17 SinglePassSamProgram Processed 390,000,000 records. Elapsed time: 01:14:10s. Time for last 1,000,000: 9s. Last read position: chr11:76,544,335 INFO 2026-06-03 21:41:29 SinglePassSamProgram Processed 391,000,000 records. Elapsed time: 01:14:22s. Time for last 1,000,000: 11s. Last read position: chr11:85,726,072 INFO 2026-06-03 21:41:39 SinglePassSamProgram Processed 392,000,000 records. Elapsed time: 01:14:32s. Time for last 1,000,000: 10s. Last read position: chr11:95,173,049 INFO 2026-06-03 21:41:52 SinglePassSamProgram Processed 393,000,000 records. Elapsed time: 01:14:45s. Time for last 1,000,000: 12s. Last read position: chr11:108,491,044 INFO 2026-06-03 21:42:00 SinglePassSamProgram Processed 394,000,000 records. Elapsed time: 01:14:53s. Time for last 1,000,000: 8s. Last read position: chr11:116,859,422 INFO 2026-06-03 21:42:10 SinglePassSamProgram Processed 395,000,000 records. Elapsed time: 01:15:03s. Time for last 1,000,000: 9s. Last read position: chr11:118,503,104 INFO 2026-06-03 21:42:21 SinglePassSamProgram Processed 396,000,000 records. Elapsed time: 01:15:15s. Time for last 1,000,000: 11s. Last read position: chr11:119,186,226 INFO 2026-06-03 21:42:32 SinglePassSamProgram Processed 397,000,000 records. Elapsed time: 01:15:25s. Time for last 1,000,000: 10s. Last read position: chr11:123,059,617 INFO 2026-06-03 21:42:42 SinglePassSamProgram Processed 398,000,000 records. Elapsed time: 01:15:35s. Time for last 1,000,000: 9s. Last read position: chr11:128,490,540 INFO 2026-06-03 21:42:49 SinglePassSamProgram Processed 399,000,000 records. Elapsed time: 01:15:42s. Time for last 1,000,000: 7s. Last read position: chr11:133,922,569 INFO 2026-06-03 21:43:06 SinglePassSamProgram Processed 400,000,000 records. Elapsed time: 01:15:59s. Time for last 1,000,000: 16s. Last read position: chr12:3,696,976 INFO 2026-06-03 21:43:15 SinglePassSamProgram Processed 401,000,000 records. Elapsed time: 01:16:08s. Time for last 1,000,000: 8s. Last read position: chr12:6,526,551 INFO 2026-06-03 21:43:39 SinglePassSamProgram Processed 402,000,000 records. Elapsed time: 01:16:32s. Time for last 1,000,000: 24s. Last read position: chr12:6,941,536 INFO 2026-06-03 21:43:48 SinglePassSamProgram Processed 403,000,000 records. Elapsed time: 01:16:41s. Time for last 1,000,000: 8s. Last read position: chr12:8,945,474 INFO 2026-06-03 21:43:55 SinglePassSamProgram Processed 404,000,000 records. Elapsed time: 01:16:48s. Time for last 1,000,000: 6s. Last read position: chr12:11,680,714 INFO 2026-06-03 21:44:03 SinglePassSamProgram Processed 405,000,000 records. Elapsed time: 01:16:56s. Time for last 1,000,000: 7s. Last read position: chr12:15,911,401 INFO 2026-06-03 21:44:12 SinglePassSamProgram Processed 406,000,000 records. Elapsed time: 01:17:05s. Time for last 1,000,000: 8s. Last read position: chr12:30,669,164 INFO 2026-06-03 21:44:22 SinglePassSamProgram Processed 407,000,000 records. Elapsed time: 01:17:16s. Time for last 1,000,000: 10s. Last read position: chr12:46,361,185 INFO 2026-06-03 21:44:33 SinglePassSamProgram Processed 408,000,000 records. Elapsed time: 01:17:27s. Time for last 1,000,000: 10s. Last read position: chr12:49,040,028 INFO 2026-06-03 21:44:39 SinglePassSamProgram Processed 409,000,000 records. Elapsed time: 01:17:32s. Time for last 1,000,000: 5s. Last read position: chr12:49,272,449 INFO 2026-06-03 21:44:49 SinglePassSamProgram Processed 410,000,000 records. Elapsed time: 01:17:42s. Time for last 1,000,000: 9s. Last read position: chr12:51,064,457 INFO 2026-06-03 21:44:57 SinglePassSamProgram Processed 411,000,000 records. Elapsed time: 01:17:50s. Time for last 1,000,000: 7s. Last read position: chr12:52,949,477 INFO 2026-06-03 21:45:08 SinglePassSamProgram Processed 412,000,000 records. Elapsed time: 01:18:02s. Time for last 1,000,000: 11s. Last read position: chr12:53,454,794 INFO 2026-06-03 21:45:24 SinglePassSamProgram Processed 413,000,000 records. Elapsed time: 01:18:17s. Time for last 1,000,000: 15s. Last read position: chr12:55,702,899 INFO 2026-06-03 21:45:36 SinglePassSamProgram Processed 414,000,000 records. Elapsed time: 01:18:29s. Time for last 1,000,000: 11s. Last read position: chr12:56,101,624 INFO 2026-06-03 21:45:48 SinglePassSamProgram Processed 415,000,000 records. Elapsed time: 01:18:41s. Time for last 1,000,000: 12s. Last read position: chr12:56,349,598 INFO 2026-06-03 21:45:59 SinglePassSamProgram Processed 416,000,000 records. Elapsed time: 01:18:52s. Time for last 1,000,000: 11s. Last read position: chr12:57,096,893 INFO 2026-06-03 21:46:16 SinglePassSamProgram Processed 417,000,000 records. Elapsed time: 01:19:10s. Time for last 1,000,000: 17s. Last read position: chr12:57,173,306 INFO 2026-06-03 21:46:30 SinglePassSamProgram Processed 418,000,000 records. Elapsed time: 01:19:24s. Time for last 1,000,000: 14s. Last read position: chr12:57,516,922 INFO 2026-06-03 21:46:43 SinglePassSamProgram Processed 419,000,000 records. Elapsed time: 01:19:36s. Time for last 1,000,000: 12s. Last read position: chr12:64,430,055 INFO 2026-06-03 21:46:52 SinglePassSamProgram Processed 420,000,000 records. Elapsed time: 01:19:46s. Time for last 1,000,000: 9s. Last read position: chr12:71,138,031 INFO 2026-06-03 21:47:03 SinglePassSamProgram Processed 421,000,000 records. Elapsed time: 01:19:57s. Time for last 1,000,000: 11s. Last read position: chr12:90,090,459 INFO 2026-06-03 21:47:10 SinglePassSamProgram Processed 422,000,000 records. Elapsed time: 01:20:03s. Time for last 1,000,000: 6s. Last read position: chr12:98,597,922 INFO 2026-06-03 21:47:27 SinglePassSamProgram Processed 423,000,000 records. Elapsed time: 01:20:21s. Time for last 1,000,000: 17s. Last read position: chr12:105,177,006 INFO 2026-06-03 21:47:36 SinglePassSamProgram Processed 424,000,000 records. Elapsed time: 01:20:30s. Time for last 1,000,000: 8s. Last read position: chr12:110,147,023 INFO 2026-06-03 21:47:50 SinglePassSamProgram Processed 425,000,000 records. Elapsed time: 01:20:43s. Time for last 1,000,000: 13s. Last read position: chr12:112,265,842 INFO 2026-06-03 21:48:04 SinglePassSamProgram Processed 426,000,000 records. Elapsed time: 01:20:57s. Time for last 1,000,000: 14s. Last read position: chr12:118,035,085 INFO 2026-06-03 21:48:16 SinglePassSamProgram Processed 427,000,000 records. Elapsed time: 01:21:09s. Time for last 1,000,000: 11s. Last read position: chr12:120,581,115 INFO 2026-06-03 21:48:25 SinglePassSamProgram Processed 428,000,000 records. Elapsed time: 01:21:18s. Time for last 1,000,000: 9s. Last read position: chr12:122,365,542 INFO 2026-06-03 21:48:36 SinglePassSamProgram Processed 429,000,000 records. Elapsed time: 01:21:29s. Time for last 1,000,000: 11s. Last read position: chr12:124,348,103 INFO 2026-06-03 21:48:49 SinglePassSamProgram Processed 430,000,000 records. Elapsed time: 01:21:42s. Time for last 1,000,000: 12s. Last read position: chr12:132,490,817 INFO 2026-06-03 21:48:58 SinglePassSamProgram Processed 431,000,000 records. Elapsed time: 01:21:51s. Time for last 1,000,000: 9s. Last read position: chr13:20,512,404 INFO 2026-06-03 21:49:03 SinglePassSamProgram Processed 432,000,000 records. Elapsed time: 01:21:56s. Time for last 1,000,000: 4s. Last read position: chr13:30,461,464 INFO 2026-06-03 21:49:13 SinglePassSamProgram Processed 433,000,000 records. Elapsed time: 01:22:07s. Time for last 1,000,000: 10s. Last read position: chr13:40,993,031 INFO 2026-06-03 21:49:21 SinglePassSamProgram Processed 434,000,000 records. Elapsed time: 01:22:14s. Time for last 1,000,000: 7s. Last read position: chr13:48,258,167 INFO 2026-06-03 21:49:28 SinglePassSamProgram Processed 435,000,000 records. Elapsed time: 01:22:21s. Time for last 1,000,000: 7s. Last read position: chr13:72,771,080 INFO 2026-06-03 21:49:39 SinglePassSamProgram Processed 436,000,000 records. Elapsed time: 01:22:32s. Time for last 1,000,000: 10s. Last read position: chr13:94,443,605 INFO 2026-06-03 21:49:52 SinglePassSamProgram Processed 437,000,000 records. Elapsed time: 01:22:45s. Time for last 1,000,000: 12s. Last read position: chr13:102,866,744 INFO 2026-06-03 21:50:04 SinglePassSamProgram Processed 438,000,000 records. Elapsed time: 01:22:57s. Time for last 1,000,000: 12s. Last read position: chr13:110,428,494 INFO 2026-06-03 21:50:16 SinglePassSamProgram Processed 439,000,000 records. Elapsed time: 01:23:10s. Time for last 1,000,000: 12s. Last read position: chr13:113,066,086 INFO 2026-06-03 21:50:27 SinglePassSamProgram Processed 440,000,000 records. Elapsed time: 01:23:20s. Time for last 1,000,000: 10s. Last read position: chr14:20,801,646 INFO 2026-06-03 21:50:41 SinglePassSamProgram Processed 441,000,000 records. Elapsed time: 01:23:34s. Time for last 1,000,000: 14s. Last read position: chr14:22,845,782 INFO 2026-06-03 21:50:49 SinglePassSamProgram Processed 442,000,000 records. Elapsed time: 01:23:42s. Time for last 1,000,000: 7s. Last read position: chr14:24,098,474 INFO 2026-06-03 21:50:59 SinglePassSamProgram Processed 443,000,000 records. Elapsed time: 01:23:52s. Time for last 1,000,000: 10s. Last read position: chr14:26,472,376 INFO 2026-06-03 21:51:16 SinglePassSamProgram Processed 444,000,000 records. Elapsed time: 01:24:09s. Time for last 1,000,000: 17s. Last read position: chr14:39,055,268 INFO 2026-06-03 21:51:22 SinglePassSamProgram Processed 445,000,000 records. Elapsed time: 01:24:16s. Time for last 1,000,000: 6s. Last read position: chr14:50,729,532 INFO 2026-06-03 21:51:30 SinglePassSamProgram Processed 446,000,000 records. Elapsed time: 01:24:23s. Time for last 1,000,000: 7s. Last read position: chr14:55,382,119 INFO 2026-06-03 21:51:53 SinglePassSamProgram Processed 447,000,000 records. Elapsed time: 01:24:46s. Time for last 1,000,000: 22s. Last read position: chr14:64,132,296 INFO 2026-06-03 21:52:15 SinglePassSamProgram Processed 448,000,000 records. Elapsed time: 01:25:08s. Time for last 1,000,000: 21s. Last read position: chr14:68,879,009 INFO 2026-06-03 21:52:27 SinglePassSamProgram Processed 449,000,000 records. Elapsed time: 01:25:20s. Time for last 1,000,000: 12s. Last read position: chr14:73,277,119 INFO 2026-06-03 21:52:36 SinglePassSamProgram Processed 450,000,000 records. Elapsed time: 01:25:29s. Time for last 1,000,000: 9s. Last read position: chr14:75,176,384 INFO 2026-06-03 21:52:43 SinglePassSamProgram Processed 451,000,000 records. Elapsed time: 01:25:36s. Time for last 1,000,000: 7s. Last read position: chr14:88,574,765 INFO 2026-06-03 21:52:52 SinglePassSamProgram Processed 452,000,000 records. Elapsed time: 01:25:45s. Time for last 1,000,000: 8s. Last read position: chr14:93,242,304 INFO 2026-06-03 21:53:01 SinglePassSamProgram Processed 453,000,000 records. Elapsed time: 01:25:54s. Time for last 1,000,000: 9s. Last read position: chr14:100,276,621 INFO 2026-06-03 21:55:02 SinglePassSamProgram Processed 454,000,000 records. Elapsed time: 01:27:55s. Time for last 1,000,000: 120s. Last read position: chr14:102,326,008 INFO 2026-06-03 21:55:14 SinglePassSamProgram Processed 455,000,000 records. Elapsed time: 01:28:07s. Time for last 1,000,000: 12s. Last read position: chr14:103,560,648 INFO 2026-06-03 21:55:40 SinglePassSamProgram Processed 456,000,000 records. Elapsed time: 01:28:33s. Time for last 1,000,000: 26s. Last read position: chr14:104,894,294 INFO 2026-06-03 21:55:46 SinglePassSamProgram Processed 457,000,000 records. Elapsed time: 01:28:39s. Time for last 1,000,000: 5s. Last read position: chr14:105,587,146 INFO 2026-06-03 21:55:47 SinglePassSamProgram Processed 458,000,000 records. Elapsed time: 01:28:40s. Time for last 1,000,000: 1s. Last read position: chr14:105,707,269 INFO 2026-06-03 21:55:49 SinglePassSamProgram Processed 459,000,000 records. Elapsed time: 01:28:42s. Time for last 1,000,000: 1s. Last read position: chr14:105,741,674 INFO 2026-06-03 21:55:53 SinglePassSamProgram Processed 460,000,000 records. Elapsed time: 01:28:46s. Time for last 1,000,000: 4s. Last read position: chr15:24,975,450 INFO 2026-06-03 21:56:19 SinglePassSamProgram Processed 461,000,000 records. Elapsed time: 01:29:12s. Time for last 1,000,000: 26s. Last read position: chr15:32,718,144 INFO 2026-06-03 21:56:25 SinglePassSamProgram Processed 462,000,000 records. Elapsed time: 01:29:18s. Time for last 1,000,000: 6s. Last read position: chr15:34,386,643 INFO 2026-06-03 21:56:30 SinglePassSamProgram Processed 463,000,000 records. Elapsed time: 01:29:23s. Time for last 1,000,000: 4s. Last read position: chr15:40,471,883 INFO 2026-06-03 21:56:39 SinglePassSamProgram Processed 464,000,000 records. Elapsed time: 01:29:32s. Time for last 1,000,000: 8s. Last read position: chr15:42,237,358 INFO 2026-06-03 21:56:49 SinglePassSamProgram Processed 465,000,000 records. Elapsed time: 01:29:42s. Time for last 1,000,000: 10s. Last read position: chr15:43,756,739 INFO 2026-06-03 21:56:58 SinglePassSamProgram Processed 466,000,000 records. Elapsed time: 01:29:51s. Time for last 1,000,000: 8s. Last read position: chr15:45,095,022 INFO 2026-06-03 21:57:07 SinglePassSamProgram Processed 467,000,000 records. Elapsed time: 01:30:00s. Time for last 1,000,000: 8s. Last read position: chr15:48,136,843 INFO 2026-06-03 21:57:19 SinglePassSamProgram Processed 468,000,000 records. Elapsed time: 01:30:12s. Time for last 1,000,000: 12s. Last read position: chr15:51,869,254 INFO 2026-06-03 21:57:32 SinglePassSamProgram Processed 469,000,000 records. Elapsed time: 01:30:26s. Time for last 1,000,000: 13s. Last read position: chr15:58,646,191 INFO 2026-06-03 21:57:53 SinglePassSamProgram Processed 470,000,000 records. Elapsed time: 01:30:46s. Time for last 1,000,000: 20s. Last read position: chr15:62,739,360 INFO 2026-06-03 21:58:06 SinglePassSamProgram Processed 471,000,000 records. Elapsed time: 01:30:59s. Time for last 1,000,000: 12s. Last read position: chr15:64,680,311 INFO 2026-06-03 21:58:12 SinglePassSamProgram Processed 472,000,000 records. Elapsed time: 01:31:06s. Time for last 1,000,000: 6s. Last read position: chr15:69,446,899 INFO 2026-06-03 21:58:25 SinglePassSamProgram Processed 473,000,000 records. Elapsed time: 01:31:18s. Time for last 1,000,000: 12s. Last read position: chr15:73,708,373 INFO 2026-06-03 21:58:36 SinglePassSamProgram Processed 474,000,000 records. Elapsed time: 01:31:29s. Time for last 1,000,000: 11s. Last read position: chr15:75,412,786 INFO 2026-06-03 21:58:43 SinglePassSamProgram Processed 475,000,000 records. Elapsed time: 01:31:36s. Time for last 1,000,000: 6s. Last read position: chr15:78,490,470 INFO 2026-06-03 21:58:51 SinglePassSamProgram Processed 476,000,000 records. Elapsed time: 01:31:44s. Time for last 1,000,000: 8s. Last read position: chr15:84,512,405 INFO 2026-06-03 21:59:00 SinglePassSamProgram Processed 477,000,000 records. Elapsed time: 01:31:53s. Time for last 1,000,000: 9s. Last read position: chr15:88,907,337 INFO 2026-06-03 21:59:10 SinglePassSamProgram Processed 478,000,000 records. Elapsed time: 01:32:04s. Time for last 1,000,000: 10s. Last read position: chr15:90,877,535 INFO 2026-06-03 21:59:20 SinglePassSamProgram Processed 479,000,000 records. Elapsed time: 01:32:13s. Time for last 1,000,000: 9s. Last read position: chr15:99,131,463 INFO 2026-06-03 21:59:27 SinglePassSamProgram Processed 480,000,000 records. Elapsed time: 01:32:20s. Time for last 1,000,000: 7s. Last read position: chr16:404,979 INFO 2026-06-03 21:59:38 SinglePassSamProgram Processed 481,000,000 records. Elapsed time: 01:32:31s. Time for last 1,000,000: 10s. Last read position: chr16:1,446,289 INFO 2026-06-03 22:00:04 SinglePassSamProgram Processed 482,000,000 records. Elapsed time: 01:32:57s. Time for last 1,000,000: 26s. Last read position: chr16:2,100,475 INFO 2026-06-03 22:00:19 SinglePassSamProgram Processed 483,000,000 records. Elapsed time: 01:33:12s. Time for last 1,000,000: 15s. Last read position: chr16:2,762,331 INFO 2026-06-03 22:00:30 SinglePassSamProgram Processed 484,000,000 records. Elapsed time: 01:33:23s. Time for last 1,000,000: 10s. Last read position: chr16:3,067,455 INFO 2026-06-03 22:00:42 SinglePassSamProgram Processed 485,000,000 records. Elapsed time: 01:33:35s. Time for last 1,000,000: 11s. Last read position: chr16:4,799,762 INFO 2026-06-03 22:00:50 SinglePassSamProgram Processed 486,000,000 records. Elapsed time: 01:33:44s. Time for last 1,000,000: 8s. Last read position: chr16:13,935,464 INFO 2026-06-03 22:00:58 SinglePassSamProgram Processed 487,000,000 records. Elapsed time: 01:33:51s. Time for last 1,000,000: 7s. Last read position: chr16:15,031,875 INFO 2026-06-03 22:01:19 SinglePassSamProgram Processed 488,000,000 records. Elapsed time: 01:34:12s. Time for last 1,000,000: 21s. Last read position: chr16:15,720,898 INFO 2026-06-03 22:01:44 SinglePassSamProgram Processed 489,000,000 records. Elapsed time: 01:34:37s. Time for last 1,000,000: 24s. Last read position: chr16:15,753,414 INFO 2026-06-03 22:02:11 SinglePassSamProgram Processed 490,000,000 records. Elapsed time: 01:35:04s. Time for last 1,000,000: 27s. Last read position: chr16:16,310,526 INFO 2026-06-03 22:02:13 SinglePassSamProgram Processed 491,000,000 records. Elapsed time: 01:35:07s. Time for last 1,000,000: 2s. Last read position: chr16:18,358,329 INFO 2026-06-03 22:02:21 SinglePassSamProgram Processed 492,000,000 records. Elapsed time: 01:35:14s. Time for last 1,000,000: 7s. Last read position: chr16:19,472,096 INFO 2026-06-03 22:02:26 SinglePassSamProgram Processed 493,000,000 records. Elapsed time: 01:35:19s. Time for last 1,000,000: 5s. Last read position: chr16:21,812,599 INFO 2026-06-03 22:02:30 SinglePassSamProgram Processed 494,000,000 records. Elapsed time: 01:35:23s. Time for last 1,000,000: 3s. Last read position: chr16:22,527,952 INFO 2026-06-03 22:02:36 SinglePassSamProgram Processed 495,000,000 records. Elapsed time: 01:35:29s. Time for last 1,000,000: 6s. Last read position: chr16:24,930,912 INFO 2026-06-03 22:02:46 SinglePassSamProgram Processed 496,000,000 records. Elapsed time: 01:35:40s. Time for last 1,000,000: 10s. Last read position: chr16:28,723,229 INFO 2026-06-03 22:02:54 SinglePassSamProgram Processed 497,000,000 records. Elapsed time: 01:35:47s. Time for last 1,000,000: 7s. Last read position: chr16:29,461,896 INFO 2026-06-03 22:02:57 SinglePassSamProgram Processed 498,000,000 records. Elapsed time: 01:35:51s. Time for last 1,000,000: 3s. Last read position: chr16:29,835,712 INFO 2026-06-03 22:03:07 SinglePassSamProgram Processed 499,000,000 records. Elapsed time: 01:36:00s. Time for last 1,000,000: 9s. Last read position: chr16:30,195,116 INFO 2026-06-03 22:03:10 SinglePassSamProgram Processed 500,000,000 records. Elapsed time: 01:36:03s. Time for last 1,000,000: 3s. Last read position: chr16:30,712,096 INFO 2026-06-03 22:03:17 SinglePassSamProgram Processed 501,000,000 records. Elapsed time: 01:36:10s. Time for last 1,000,000: 6s. Last read position: chr16:31,185,143 INFO 2026-06-03 22:03:26 SinglePassSamProgram Processed 502,000,000 records. Elapsed time: 01:36:19s. Time for last 1,000,000: 8s. Last read position: chr16:50,750,098 INFO 2026-06-03 22:03:35 SinglePassSamProgram Processed 503,000,000 records. Elapsed time: 01:36:28s. Time for last 1,000,000: 9s. Last read position: chr16:56,940,182 INFO 2026-06-03 22:03:49 SinglePassSamProgram Processed 504,000,000 records. Elapsed time: 01:36:42s. Time for last 1,000,000: 14s. Last read position: chr16:66,563,121 INFO 2026-06-03 22:03:58 SinglePassSamProgram Processed 505,000,000 records. Elapsed time: 01:36:51s. Time for last 1,000,000: 9s. Last read position: chr16:67,878,201 INFO 2026-06-03 22:04:07 SinglePassSamProgram Processed 506,000,000 records. Elapsed time: 01:37:00s. Time for last 1,000,000: 8s. Last read position: chr16:69,659,728 INFO 2026-06-03 22:04:19 SinglePassSamProgram Processed 507,000,000 records. Elapsed time: 01:37:13s. Time for last 1,000,000: 12s. Last read position: chr16:71,921,436 INFO 2026-06-03 22:04:27 SinglePassSamProgram Processed 508,000,000 records. Elapsed time: 01:37:20s. Time for last 1,000,000: 7s. Last read position: chr16:75,640,285 INFO 2026-06-03 22:04:34 SinglePassSamProgram Processed 509,000,000 records. Elapsed time: 01:37:27s. Time for last 1,000,000: 7s. Last read position: chr16:85,663,599 INFO 2026-06-03 22:04:41 SinglePassSamProgram Processed 510,000,000 records. Elapsed time: 01:37:34s. Time for last 1,000,000: 6s. Last read position: chr16:88,810,530 INFO 2026-06-03 22:05:01 SinglePassSamProgram Processed 511,000,000 records. Elapsed time: 01:37:55s. Time for last 1,000,000: 20s. Last read position: chr17:745,696 INFO 2026-06-03 22:05:13 SinglePassSamProgram Processed 512,000,000 records. Elapsed time: 01:38:06s. Time for last 1,000,000: 11s. Last read position: chr17:1,656,536 INFO 2026-06-03 22:05:23 SinglePassSamProgram Processed 513,000,000 records. Elapsed time: 01:38:16s. Time for last 1,000,000: 9s. Last read position: chr17:3,652,306 INFO 2026-06-03 22:05:33 SinglePassSamProgram Processed 514,000,000 records. Elapsed time: 01:38:26s. Time for last 1,000,000: 9s. Last read position: chr17:4,738,862 INFO 2026-06-03 22:05:42 SinglePassSamProgram Processed 515,000,000 records. Elapsed time: 01:38:35s. Time for last 1,000,000: 9s. Last read position: chr17:5,541,896 INFO 2026-06-03 22:05:53 SinglePassSamProgram Processed 516,000,000 records. Elapsed time: 01:38:47s. Time for last 1,000,000: 11s. Last read position: chr17:7,393,826 INFO 2026-06-03 22:06:01 SinglePassSamProgram Processed 517,000,000 records. Elapsed time: 01:38:54s. Time for last 1,000,000: 7s. Last read position: chr17:7,676,102 INFO 2026-06-03 22:06:12 SinglePassSamProgram Processed 518,000,000 records. Elapsed time: 01:39:05s. Time for last 1,000,000: 10s. Last read position: chr17:9,946,964 INFO 2026-06-03 22:06:26 SinglePassSamProgram Processed 519,000,000 records. Elapsed time: 01:39:19s. Time for last 1,000,000: 13s. Last read position: chr17:16,382,421 INFO 2026-06-03 22:06:36 SinglePassSamProgram Processed 520,000,000 records. Elapsed time: 01:39:29s. Time for last 1,000,000: 10s. Last read position: chr17:18,252,078 INFO 2026-06-03 22:06:49 SinglePassSamProgram Processed 521,000,000 records. Elapsed time: 01:39:42s. Time for last 1,000,000: 12s. Last read position: chr17:22,204,379 INFO 2026-06-03 22:06:59 SinglePassSamProgram Processed 522,000,000 records. Elapsed time: 01:39:52s. Time for last 1,000,000: 9s. Last read position: chr17:28,749,239 INFO 2026-06-03 22:07:10 SinglePassSamProgram Processed 523,000,000 records. Elapsed time: 01:40:03s. Time for last 1,000,000: 11s. Last read position: chr17:31,229,059 INFO 2026-06-03 22:07:24 SinglePassSamProgram Processed 524,000,000 records. Elapsed time: 01:40:17s. Time for last 1,000,000: 13s. Last read position: chr17:35,820,374 INFO 2026-06-03 22:07:31 SinglePassSamProgram Processed 525,000,000 records. Elapsed time: 01:40:24s. Time for last 1,000,000: 7s. Last read position: chr17:38,466,527 INFO 2026-06-03 22:07:38 SinglePassSamProgram Processed 526,000,000 records. Elapsed time: 01:40:32s. Time for last 1,000,000: 7s. Last read position: chr17:39,709,375 INFO 2026-06-03 22:07:57 SinglePassSamProgram Processed 527,000,000 records. Elapsed time: 01:40:50s. Time for last 1,000,000: 18s. Last read position: chr17:40,189,312 INFO 2026-06-03 22:08:02 SinglePassSamProgram Processed 528,000,000 records. Elapsed time: 01:40:56s. Time for last 1,000,000: 5s. Last read position: chr17:41,688,937 INFO 2026-06-03 22:08:22 SinglePassSamProgram Processed 529,000,000 records. Elapsed time: 01:41:15s. Time for last 1,000,000: 19s. Last read position: chr17:42,404,631 INFO 2026-06-03 22:08:29 SinglePassSamProgram Processed 530,000,000 records. Elapsed time: 01:41:23s. Time for last 1,000,000: 7s. Last read position: chr17:43,400,052 INFO 2026-06-03 22:08:39 SinglePassSamProgram Processed 531,000,000 records. Elapsed time: 01:41:32s. Time for last 1,000,000: 9s. Last read position: chr17:45,115,093 INFO 2026-06-03 22:08:47 SinglePassSamProgram Processed 532,000,000 records. Elapsed time: 01:41:40s. Time for last 1,000,000: 7s. Last read position: chr17:46,570,780 INFO 2026-06-03 22:08:59 SinglePassSamProgram Processed 533,000,000 records. Elapsed time: 01:41:52s. Time for last 1,000,000: 11s. Last read position: chr17:48,705,208 INFO 2026-06-03 22:09:05 SinglePassSamProgram Processed 534,000,000 records. Elapsed time: 01:41:59s. Time for last 1,000,000: 6s. Last read position: chr17:50,149,188 INFO 2026-06-03 22:09:11 SinglePassSamProgram Processed 535,000,000 records. Elapsed time: 01:42:04s. Time for last 1,000,000: 5s. Last read position: chr17:50,189,521 INFO 2026-06-03 22:09:18 SinglePassSamProgram Processed 536,000,000 records. Elapsed time: 01:42:12s. Time for last 1,000,000: 7s. Last read position: chr17:50,194,398 INFO 2026-06-03 22:09:29 SinglePassSamProgram Processed 537,000,000 records. Elapsed time: 01:42:23s. Time for last 1,000,000: 11s. Last read position: chr17:50,198,469 INFO 2026-06-03 22:09:41 SinglePassSamProgram Processed 538,000,000 records. Elapsed time: 01:42:35s. Time for last 1,000,000: 11s. Last read position: chr17:51,203,864 INFO 2026-06-03 22:09:49 SinglePassSamProgram Processed 539,000,000 records. Elapsed time: 01:42:42s. Time for last 1,000,000: 7s. Last read position: chr17:59,660,544 INFO 2026-06-03 22:10:02 SinglePassSamProgram Processed 540,000,000 records. Elapsed time: 01:42:55s. Time for last 1,000,000: 12s. Last read position: chr17:60,158,375 INFO 2026-06-03 22:10:12 SinglePassSamProgram Processed 541,000,000 records. Elapsed time: 01:43:05s. Time for last 1,000,000: 10s. Last read position: chr17:63,833,112 INFO 2026-06-03 22:10:23 SinglePassSamProgram Processed 542,000,000 records. Elapsed time: 01:43:16s. Time for last 1,000,000: 10s. Last read position: chr17:67,826,074 INFO 2026-06-03 22:10:36 SinglePassSamProgram Processed 543,000,000 records. Elapsed time: 01:43:29s. Time for last 1,000,000: 13s. Last read position: chr17:73,286,217 INFO 2026-06-03 22:10:46 SinglePassSamProgram Processed 544,000,000 records. Elapsed time: 01:43:39s. Time for last 1,000,000: 10s. Last read position: chr17:75,573,595 INFO 2026-06-03 22:11:20 SinglePassSamProgram Processed 545,000,000 records. Elapsed time: 01:44:13s. Time for last 1,000,000: 33s. Last read position: chr17:75,753,802 INFO 2026-06-03 22:11:30 SinglePassSamProgram Processed 546,000,000 records. Elapsed time: 01:44:24s. Time for last 1,000,000: 10s. Last read position: chr17:76,629,448 INFO 2026-06-03 22:11:42 SinglePassSamProgram Processed 547,000,000 records. Elapsed time: 01:44:35s. Time for last 1,000,000: 11s. Last read position: chr17:78,857,569 INFO 2026-06-03 22:11:50 SinglePassSamProgram Processed 548,000,000 records. Elapsed time: 01:44:43s. Time for last 1,000,000: 8s. Last read position: chr17:80,340,039 INFO 2026-06-03 22:12:04 SinglePassSamProgram Processed 549,000,000 records. Elapsed time: 01:44:58s. Time for last 1,000,000: 14s. Last read position: chr17:81,589,076 INFO 2026-06-03 22:12:34 SinglePassSamProgram Processed 550,000,000 records. Elapsed time: 01:45:28s. Time for last 1,000,000: 29s. Last read position: chr17:82,036,234 INFO 2026-06-03 22:12:46 SinglePassSamProgram Processed 551,000,000 records. Elapsed time: 01:45:39s. Time for last 1,000,000: 11s. Last read position: chr18:756,699 INFO 2026-06-03 22:12:55 SinglePassSamProgram Processed 552,000,000 records. Elapsed time: 01:45:48s. Time for last 1,000,000: 9s. Last read position: chr18:9,936,177 INFO 2026-06-03 22:13:06 SinglePassSamProgram Processed 553,000,000 records. Elapsed time: 01:46:00s. Time for last 1,000,000: 11s. Last read position: chr18:24,178,010 INFO 2026-06-03 22:13:14 SinglePassSamProgram Processed 554,000,000 records. Elapsed time: 01:46:07s. Time for last 1,000,000: 7s. Last read position: chr18:41,799,190 INFO 2026-06-03 22:13:24 SinglePassSamProgram Processed 555,000,000 records. Elapsed time: 01:46:17s. Time for last 1,000,000: 9s. Last read position: chr18:54,188,906 INFO 2026-06-03 22:13:51 SinglePassSamProgram Processed 556,000,000 records. Elapsed time: 01:46:44s. Time for last 1,000,000: 27s. Last read position: chr18:62,368,861 INFO 2026-06-03 22:13:59 SinglePassSamProgram Processed 557,000,000 records. Elapsed time: 01:46:52s. Time for last 1,000,000: 7s. Last read position: chr19:307,064 INFO 2026-06-03 22:14:06 SinglePassSamProgram Processed 558,000,000 records. Elapsed time: 01:47:00s. Time for last 1,000,000: 7s. Last read position: chr19:929,628 INFO 2026-06-03 22:14:16 SinglePassSamProgram Processed 559,000,000 records. Elapsed time: 01:47:09s. Time for last 1,000,000: 9s. Last read position: chr19:1,300,504 INFO 2026-06-03 22:14:24 SinglePassSamProgram Processed 560,000,000 records. Elapsed time: 01:47:17s. Time for last 1,000,000: 7s. Last read position: chr19:2,137,727 INFO 2026-06-03 22:14:30 SinglePassSamProgram Processed 561,000,000 records. Elapsed time: 01:47:23s. Time for last 1,000,000: 6s. Last read position: chr19:3,544,662 INFO 2026-06-03 22:14:36 SinglePassSamProgram Processed 562,000,000 records. Elapsed time: 01:47:30s. Time for last 1,000,000: 6s. Last read position: chr19:4,488,816 INFO 2026-06-03 22:14:46 SinglePassSamProgram Processed 563,000,000 records. Elapsed time: 01:47:39s. Time for last 1,000,000: 9s. Last read position: chr19:5,789,255 INFO 2026-06-03 22:14:53 SinglePassSamProgram Processed 564,000,000 records. Elapsed time: 01:47:46s. Time for last 1,000,000: 6s. Last read position: chr19:6,759,657 INFO 2026-06-03 22:15:01 SinglePassSamProgram Processed 565,000,000 records. Elapsed time: 01:47:54s. Time for last 1,000,000: 8s. Last read position: chr19:8,390,402 INFO 2026-06-03 22:15:15 SinglePassSamProgram Processed 566,000,000 records. Elapsed time: 01:48:08s. Time for last 1,000,000: 13s. Last read position: chr19:10,224,146 INFO 2026-06-03 22:15:27 SinglePassSamProgram Processed 567,000,000 records. Elapsed time: 01:48:21s. Time for last 1,000,000: 12s. Last read position: chr19:10,986,961 INFO 2026-06-03 22:15:48 SinglePassSamProgram Processed 568,000,000 records. Elapsed time: 01:48:41s. Time for last 1,000,000: 20s. Last read position: chr19:11,666,754 INFO 2026-06-03 22:15:55 SinglePassSamProgram Processed 569,000,000 records. Elapsed time: 01:48:49s. Time for last 1,000,000: 7s. Last read position: chr19:13,025,136 INFO 2026-06-03 22:16:04 SinglePassSamProgram Processed 570,000,000 records. Elapsed time: 01:48:57s. Time for last 1,000,000: 8s. Last read position: chr19:14,452,012 INFO 2026-06-03 22:16:12 SinglePassSamProgram Processed 571,000,000 records. Elapsed time: 01:49:05s. Time for last 1,000,000: 7s. Last read position: chr19:15,244,742 INFO 2026-06-03 22:16:23 SinglePassSamProgram Processed 572,000,000 records. Elapsed time: 01:49:17s. Time for last 1,000,000: 11s. Last read position: chr19:16,869,675 INFO 2026-06-03 22:16:33 SinglePassSamProgram Processed 573,000,000 records. Elapsed time: 01:49:26s. Time for last 1,000,000: 9s. Last read position: chr19:17,862,110 INFO 2026-06-03 22:16:39 SinglePassSamProgram Processed 574,000,000 records. Elapsed time: 01:49:32s. Time for last 1,000,000: 5s. Last read position: chr19:18,777,236 INFO 2026-06-03 22:16:45 SinglePassSamProgram Processed 575,000,000 records. Elapsed time: 01:49:39s. Time for last 1,000,000: 6s. Last read position: chr19:30,007,494 INFO 2026-06-03 22:16:53 SinglePassSamProgram Processed 576,000,000 records. Elapsed time: 01:49:46s. Time for last 1,000,000: 7s. Last read position: chr19:35,123,278 INFO 2026-06-03 22:17:02 SinglePassSamProgram Processed 577,000,000 records. Elapsed time: 01:49:55s. Time for last 1,000,000: 8s. Last read position: chr19:36,039,424 INFO 2026-06-03 22:17:10 SinglePassSamProgram Processed 578,000,000 records. Elapsed time: 01:50:03s. Time for last 1,000,000: 8s. Last read position: chr19:38,647,807 INFO 2026-06-03 22:17:17 SinglePassSamProgram Processed 579,000,000 records. Elapsed time: 01:50:10s. Time for last 1,000,000: 7s. Last read position: chr19:38,849,845 INFO 2026-06-03 22:17:24 SinglePassSamProgram Processed 580,000,000 records. Elapsed time: 01:50:18s. Time for last 1,000,000: 7s. Last read position: chr19:39,863,860 INFO 2026-06-03 22:17:27 SinglePassSamProgram Processed 581,000,000 records. Elapsed time: 01:50:20s. Time for last 1,000,000: 2s. Last read position: chr19:39,875,417 INFO 2026-06-03 22:17:29 SinglePassSamProgram Processed 582,000,000 records. Elapsed time: 01:50:22s. Time for last 1,000,000: 1s. Last read position: chr19:39,877,259 INFO 2026-06-03 22:17:31 SinglePassSamProgram Processed 583,000,000 records. Elapsed time: 01:50:25s. Time for last 1,000,000: 2s. Last read position: chr19:39,883,353 INFO 2026-06-03 22:17:34 SinglePassSamProgram Processed 584,000,000 records. Elapsed time: 01:50:27s. Time for last 1,000,000: 2s. Last read position: chr19:39,889,595 INFO 2026-06-03 22:17:37 SinglePassSamProgram Processed 585,000,000 records. Elapsed time: 01:50:30s. Time for last 1,000,000: 2s. Last read position: chr19:39,891,859 INFO 2026-06-03 22:17:40 SinglePassSamProgram Processed 586,000,000 records. Elapsed time: 01:50:34s. Time for last 1,000,000: 3s. Last read position: chr19:39,893,425 INFO 2026-06-03 22:17:44 SinglePassSamProgram Processed 587,000,000 records. Elapsed time: 01:50:37s. Time for last 1,000,000: 3s. Last read position: chr19:39,899,634 INFO 2026-06-03 22:17:48 SinglePassSamProgram Processed 588,000,000 records. Elapsed time: 01:50:41s. Time for last 1,000,000: 4s. Last read position: chr19:39,913,690 INFO 2026-06-03 22:17:53 SinglePassSamProgram Processed 589,000,000 records. Elapsed time: 01:50:47s. Time for last 1,000,000: 5s. Last read position: chr19:39,918,430 INFO 2026-06-03 22:17:59 SinglePassSamProgram Processed 590,000,000 records. Elapsed time: 01:50:52s. Time for last 1,000,000: 5s. Last read position: chr19:39,943,397 INFO 2026-06-03 22:18:15 SinglePassSamProgram Processed 591,000,000 records. Elapsed time: 01:51:08s. Time for last 1,000,000: 15s. Last read position: chr19:40,622,405 INFO 2026-06-03 22:18:26 SinglePassSamProgram Processed 592,000,000 records. Elapsed time: 01:51:20s. Time for last 1,000,000: 11s. Last read position: chr19:41,686,921 INFO 2026-06-03 22:18:31 SinglePassSamProgram Processed 593,000,000 records. Elapsed time: 01:51:24s. Time for last 1,000,000: 4s. Last read position: chr19:41,715,877 INFO 2026-06-03 22:18:38 SinglePassSamProgram Processed 594,000,000 records. Elapsed time: 01:51:31s. Time for last 1,000,000: 6s. Last read position: chr19:41,755,571 INFO 2026-06-03 22:18:44 SinglePassSamProgram Processed 595,000,000 records. Elapsed time: 01:51:37s. Time for last 1,000,000: 6s. Last read position: chr19:42,272,778 INFO 2026-06-03 22:18:53 SinglePassSamProgram Processed 596,000,000 records. Elapsed time: 01:51:46s. Time for last 1,000,000: 8s. Last read position: chr19:43,511,451 INFO 2026-06-03 22:18:58 SinglePassSamProgram Processed 597,000,000 records. Elapsed time: 01:51:52s. Time for last 1,000,000: 5s. Last read position: chr19:45,271,545 INFO 2026-06-03 22:19:07 SinglePassSamProgram Processed 598,000,000 records. Elapsed time: 01:52:00s. Time for last 1,000,000: 8s. Last read position: chr19:46,608,238 INFO 2026-06-03 22:19:13 SinglePassSamProgram Processed 599,000,000 records. Elapsed time: 01:52:07s. Time for last 1,000,000: 6s. Last read position: chr19:48,150,198 INFO 2026-06-03 22:19:20 SinglePassSamProgram Processed 600,000,000 records. Elapsed time: 01:52:13s. Time for last 1,000,000: 6s. Last read position: chr19:49,104,687 INFO 2026-06-03 22:19:29 SinglePassSamProgram Processed 601,000,000 records. Elapsed time: 01:52:22s. Time for last 1,000,000: 8s. Last read position: chr19:49,636,676 INFO 2026-06-03 22:19:41 SinglePassSamProgram Processed 602,000,000 records. Elapsed time: 01:52:34s. Time for last 1,000,000: 12s. Last read position: chr19:50,276,014 INFO 2026-06-03 22:19:54 SinglePassSamProgram Processed 603,000,000 records. Elapsed time: 01:52:47s. Time for last 1,000,000: 12s. Last read position: chr19:52,915,265 INFO 2026-06-03 22:20:01 SinglePassSamProgram Processed 604,000,000 records. Elapsed time: 01:52:54s. Time for last 1,000,000: 7s. Last read position: chr19:54,462,784 INFO 2026-06-03 22:20:07 SinglePassSamProgram Processed 605,000,000 records. Elapsed time: 01:53:00s. Time for last 1,000,000: 5s. Last read position: chr19:55,602,115 INFO 2026-06-03 22:20:12 SinglePassSamProgram Processed 606,000,000 records. Elapsed time: 01:53:05s. Time for last 1,000,000: 4s. Last read position: chr19:58,294,593 INFO 2026-06-03 22:20:20 SinglePassSamProgram Processed 607,000,000 records. Elapsed time: 01:53:13s. Time for last 1,000,000: 8s. Last read position: chr20:2,655,463 INFO 2026-06-03 22:20:25 SinglePassSamProgram Processed 608,000,000 records. Elapsed time: 01:53:18s. Time for last 1,000,000: 5s. Last read position: chr20:5,165,814 INFO 2026-06-03 22:20:34 SinglePassSamProgram Processed 609,000,000 records. Elapsed time: 01:53:27s. Time for last 1,000,000: 9s. Last read position: chr20:17,658,633 INFO 2026-06-03 22:20:43 SinglePassSamProgram Processed 610,000,000 records. Elapsed time: 01:53:36s. Time for last 1,000,000: 8s. Last read position: chr20:24,983,690 INFO 2026-06-03 22:20:51 SinglePassSamProgram Processed 611,000,000 records. Elapsed time: 01:53:44s. Time for last 1,000,000: 8s. Last read position: chr20:32,704,036 INFO 2026-06-03 22:21:00 SinglePassSamProgram Processed 612,000,000 records. Elapsed time: 01:53:54s. Time for last 1,000,000: 9s. Last read position: chr20:35,547,434 INFO 2026-06-03 22:21:13 SinglePassSamProgram Processed 613,000,000 records. Elapsed time: 01:54:06s. Time for last 1,000,000: 12s. Last read position: chr20:37,179,351 INFO 2026-06-03 22:21:20 SinglePassSamProgram Processed 614,000,000 records. Elapsed time: 01:54:14s. Time for last 1,000,000: 7s. Last read position: chr20:43,460,968 INFO 2026-06-03 22:21:32 SinglePassSamProgram Processed 615,000,000 records. Elapsed time: 01:54:26s. Time for last 1,000,000: 12s. Last read position: chr20:45,892,845 INFO 2026-06-03 22:21:48 SinglePassSamProgram Processed 616,000,000 records. Elapsed time: 01:54:42s. Time for last 1,000,000: 16s. Last read position: chr20:49,254,617 INFO 2026-06-03 22:21:53 SinglePassSamProgram Processed 617,000,000 records. Elapsed time: 01:54:46s. Time for last 1,000,000: 4s. Last read position: chr20:56,359,012 INFO 2026-06-03 22:22:11 SinglePassSamProgram Processed 618,000,000 records. Elapsed time: 01:55:04s. Time for last 1,000,000: 18s. Last read position: chr20:62,139,144 INFO 2026-06-03 22:22:20 SinglePassSamProgram Processed 619,000,000 records. Elapsed time: 01:55:13s. Time for last 1,000,000: 8s. Last read position: chr20:63,272,826 INFO 2026-06-03 22:22:27 SinglePassSamProgram Processed 620,000,000 records. Elapsed time: 01:55:20s. Time for last 1,000,000: 6s. Last read position: chr21:5,141,355 INFO 2026-06-03 22:22:28 SinglePassSamProgram Processed 621,000,000 records. Elapsed time: 01:55:21s. Time for last 1,000,000: 1s. Last read position: chr21:8,397,705 INFO 2026-06-03 22:22:29 SinglePassSamProgram Processed 622,000,000 records. Elapsed time: 01:55:22s. Time for last 1,000,000: 1s. Last read position: chr21:8,460,119 INFO 2026-06-03 22:22:40 SinglePassSamProgram Processed 623,000,000 records. Elapsed time: 01:55:33s. Time for last 1,000,000: 11s. Last read position: chr21:29,038,367 INFO 2026-06-03 22:22:49 SinglePassSamProgram Processed 624,000,000 records. Elapsed time: 01:55:42s. Time for last 1,000,000: 9s. Last read position: chr21:33,907,425 INFO 2026-06-03 22:23:05 SinglePassSamProgram Processed 625,000,000 records. Elapsed time: 01:55:58s. Time for last 1,000,000: 15s. Last read position: chr21:39,660,987 INFO 2026-06-03 22:23:34 SinglePassSamProgram Processed 626,000,000 records. Elapsed time: 01:56:27s. Time for last 1,000,000: 29s. Last read position: chr21:41,992,617 INFO 2026-06-03 22:23:39 SinglePassSamProgram Processed 627,000,000 records. Elapsed time: 01:56:33s. Time for last 1,000,000: 5s. Last read position: chr21:44,323,904 INFO 2026-06-03 22:23:53 SinglePassSamProgram Processed 628,000,000 records. Elapsed time: 01:56:46s. Time for last 1,000,000: 13s. Last read position: chr21:45,515,780 INFO 2026-06-03 22:24:01 SinglePassSamProgram Processed 629,000,000 records. Elapsed time: 01:56:55s. Time for last 1,000,000: 8s. Last read position: chr21:46,126,094 INFO 2026-06-03 22:24:13 SinglePassSamProgram Processed 630,000,000 records. Elapsed time: 01:57:06s. Time for last 1,000,000: 11s. Last read position: chr22:17,841,827 INFO 2026-06-03 22:24:23 SinglePassSamProgram Processed 631,000,000 records. Elapsed time: 01:57:16s. Time for last 1,000,000: 10s. Last read position: chr22:20,734,435 INFO 2026-06-03 22:24:34 SinglePassSamProgram Processed 632,000,000 records. Elapsed time: 01:57:27s. Time for last 1,000,000: 10s. Last read position: chr22:23,312,999 INFO 2026-06-03 22:24:42 SinglePassSamProgram Processed 633,000,000 records. Elapsed time: 01:57:35s. Time for last 1,000,000: 7s. Last read position: chr22:26,541,359 INFO 2026-06-03 22:24:55 SinglePassSamProgram Processed 634,000,000 records. Elapsed time: 01:57:48s. Time for last 1,000,000: 13s. Last read position: chr22:29,311,558 INFO 2026-06-03 22:25:07 SinglePassSamProgram Processed 635,000,000 records. Elapsed time: 01:58:00s. Time for last 1,000,000: 11s. Last read position: chr22:31,262,741 INFO 2026-06-03 22:25:21 SinglePassSamProgram Processed 636,000,000 records. Elapsed time: 01:58:14s. Time for last 1,000,000: 13s. Last read position: chr22:36,282,634 INFO 2026-06-03 22:25:27 SinglePassSamProgram Processed 637,000,000 records. Elapsed time: 01:58:20s. Time for last 1,000,000: 6s. Last read position: chr22:37,061,542 INFO 2026-06-03 22:25:34 SinglePassSamProgram Processed 638,000,000 records. Elapsed time: 01:58:28s. Time for last 1,000,000: 7s. Last read position: chr22:38,085,689 INFO 2026-06-03 22:25:41 SinglePassSamProgram Processed 639,000,000 records. Elapsed time: 01:58:34s. Time for last 1,000,000: 6s. Last read position: chr22:39,488,827 INFO 2026-06-03 22:25:49 SinglePassSamProgram Processed 640,000,000 records. Elapsed time: 01:58:42s. Time for last 1,000,000: 7s. Last read position: chr22:41,499,730 INFO 2026-06-03 22:25:58 SinglePassSamProgram Processed 641,000,000 records. Elapsed time: 01:58:52s. Time for last 1,000,000: 9s. Last read position: chr22:43,159,392 INFO 2026-06-03 22:26:06 SinglePassSamProgram Processed 642,000,000 records. Elapsed time: 01:59:00s. Time for last 1,000,000: 8s. Last read position: chr22:49,886,507 INFO 2026-06-03 22:26:18 SinglePassSamProgram Processed 643,000,000 records. Elapsed time: 01:59:11s. Time for last 1,000,000: 11s. Last read position: chr22:50,464,587 INFO 2026-06-03 22:26:24 SinglePassSamProgram Processed 644,000,000 records. Elapsed time: 01:59:17s. Time for last 1,000,000: 5s. Last read position: chrX:3,310,679 INFO 2026-06-03 22:26:29 SinglePassSamProgram Processed 645,000,000 records. Elapsed time: 01:59:23s. Time for last 1,000,000: 5s. Last read position: chrX:17,047,413 INFO 2026-06-03 22:26:44 SinglePassSamProgram Processed 646,000,000 records. Elapsed time: 01:59:38s. Time for last 1,000,000: 14s. Last read position: chrX:40,052,108 INFO 2026-06-03 22:27:11 SinglePassSamProgram Processed 647,000,000 records. Elapsed time: 02:00:05s. Time for last 1,000,000: 27s. Last read position: chrX:46,575,344 INFO 2026-06-03 22:27:21 SinglePassSamProgram Processed 648,000,000 records. Elapsed time: 02:00:14s. Time for last 1,000,000: 9s. Last read position: chrX:48,909,811 INFO 2026-06-03 22:27:29 SinglePassSamProgram Processed 649,000,000 records. Elapsed time: 02:00:22s. Time for last 1,000,000: 7s. Last read position: chrX:53,405,872 INFO 2026-06-03 22:27:45 SinglePassSamProgram Processed 650,000,000 records. Elapsed time: 02:00:38s. Time for last 1,000,000: 16s. Last read position: chrX:65,731,117 INFO 2026-06-03 22:27:56 SinglePassSamProgram Processed 651,000,000 records. Elapsed time: 02:00:50s. Time for last 1,000,000: 11s. Last read position: chrX:71,383,035 INFO 2026-06-03 22:28:08 SinglePassSamProgram Processed 652,000,000 records. Elapsed time: 02:01:02s. Time for last 1,000,000: 12s. Last read position: chrX:80,699,965 INFO 2026-06-03 22:28:14 SinglePassSamProgram Processed 653,000,000 records. Elapsed time: 02:01:07s. Time for last 1,000,000: 5s. Last read position: chrX:106,840,738 INFO 2026-06-03 22:28:24 SinglePassSamProgram Processed 654,000,000 records. Elapsed time: 02:01:17s. Time for last 1,000,000: 9s. Last read position: chrX:119,936,343 INFO 2026-06-03 22:28:36 SinglePassSamProgram Processed 655,000,000 records. Elapsed time: 02:01:29s. Time for last 1,000,000: 11s. Last read position: chrX:136,208,599 INFO 2026-06-03 22:28:43 SinglePassSamProgram Processed 656,000,000 records. Elapsed time: 02:01:36s. Time for last 1,000,000: 7s. Last read position: chrX:153,770,197 INFO 2026-06-03 22:28:53 SinglePassSamProgram Processed 657,000,000 records. Elapsed time: 02:01:46s. Time for last 1,000,000: 9s. Last read position: chrX:154,349,778 INFO 2026-06-03 22:29:16 SinglePassSamProgram Processed 658,000,000 records. Elapsed time: 02:02:09s. Time for last 1,000,000: 22s. Last read position: chrX:154,360,228 INFO 2026-06-03 22:30:00 SinglePassSamProgram Processed 659,000,000 records. Elapsed time: 02:02:53s. Time for last 1,000,000: 44s. Last read position: chrX:154,367,907 INFO 2026-06-03 22:30:17 SinglePassSamProgram Processed 660,000,000 records. Elapsed time: 02:03:11s. Time for last 1,000,000: 17s. Last read position: chrY:11,116,664 INFO 2026-06-03 22:30:18 SinglePassSamProgram Processed 661,000,000 records. Elapsed time: 02:03:11s. Time for last 1,000,000: 0s. Last read position: GL000220.1:158,158 INFO 2026-06-03 22:30:19 SinglePassSamProgram Processed 662,000,000 records. Elapsed time: 02:03:12s. Time for last 1,000,000: 0s. Last read position: KI270733.1:133,628 INFO 2026-06-03 22:30:20 SinglePassSamProgram Processed 663,000,000 records. Elapsed time: 02:03:13s. Time for last 1,000,000: 0s. Last read position: */* INFO 2026-06-03 22:30:20 SinglePassSamProgram Processed 664,000,000 records. Elapsed time: 02:03:14s. Time for last 1,000,000: 0s. Last read position: */* INFO 2026-06-03 22:30:21 SinglePassSamProgram Processed 665,000,000 records. Elapsed time: 02:03:14s. Time for last 1,000,000: 0s. Last read position: */* INFO 2026-06-03 22:30:22 SinglePassSamProgram Processed 666,000,000 records. Elapsed time: 02:03:15s. Time for last 1,000,000: 0s. Last read position: */* [Wed Jun 03 22:30:23 GMT 2026] picard.analysis.CollectRnaSeqMetrics done. Elapsed time: 123.32 minutes. Runtime.totalMemory()=3456630784