Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/d0/db0390e137cf3062481f869034d2c8/ref_annot.bed
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/65/af544376f1d7131e7eccdf42ca6d95/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/4b/ce426489fe8f62557e6ec077b9f0d5/aih-tih-sc-31d31f-R1_A23YTGFLT4_1.Aligned.sortedByCoord.out.bam.bai
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/65/af544376f1d7131e7eccdf42ca6d95/.command.run
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/90/184faea4f130c0eae580ccd3e890be/aih-tih-sc-31d31f-R1_A23YTGFLT4_1.Aligned.sortedByCoord.out.bam
==> STAGING COMPLETE (5 inputs)

null device 
          1 
null device 
          1 
total = 138841252
[W::hts_idx_load3] The index file is older than the data file: aih-tih-sc-31d31f-R1_A23YTGFLT4_1.Aligned.sortedByCoord.out.bam.bai
Reading reference bed file:  ref_annot.bed  ...  Done
Load BAM file ...  Done

===================================================================
Total splicing  Events:	138841252
Known Splicing Events:	137157335
Partial Novel Splicing Events:	927476
Novel Splicing Events:	696710
Filtered Splicing Events:	59731

Total splicing  Junctions:	285852
Known Splicing Junctions:	207465
Partial Novel Splicing Junctions:	50424
Novel Splicing Junctions:	27963

===================================================================
Create BED file ...
Create Interact file ...