Done. -parsing GTF file: /tmp/nxf.UqHZd5TehN/aih-tih-sc-6c4b48-R1_A23YTGFLT4_1.gtf * Running CMD: /usr/local/bin/STAR --runThreadN 8 --genomeDir /tmp/nxf.UqHZd5TehN/ctat_genome_lib_build_dir/ref_genome.fa.star.idx --outSAMtype BAM SortedByCoordinate --twopassMode None --alignSJDBoverhangMin 10 --genomeSuffixLengthMax 10000 --limitBAMsortRAM 47271261705 --alignInsertionFlush Right --alignMatesGapMax 100000 --alignIntronMax 100000 --outSAMattributes All --readFilesIn /tmp/nxf.UqHZd5TehN/aih-tih-sc-6c4b48-R1_A23YTGFLT4_1_1.fastp.fastq.gz /tmp/nxf.UqHZd5TehN/aih-tih-sc-6c4b48-R1_A23YTGFLT4_1_2.fastp.fastq.gz --genomeFastaFiles /tmp/nxf.UqHZd5TehN/fi_workdir/aih-tih-sc-6c4b48-R1_A23YTGFLT4_1.fa --outSAMfilter KeepAllAddedReferences --sjdbGTFfile /tmp/nxf.UqHZd5TehN/fi_workdir/aih-tih-sc-6c4b48-R1_A23YTGFLT4_1.gtf --alignSJstitchMismatchNmax 5 -1 5 5 --scoreGapNoncan -6 --readFilesCommand 'gunzip -c' * Running CMD: mv Aligned.sortedByCoord.out.bam aih-tih-sc-6c4b48-R1_A23YTGFLT4_1.star.sortedByCoord.out.bam * Running CMD: samtools index aih-tih-sc-6c4b48-R1_A23YTGFLT4_1.star.sortedByCoord.out.bam 22:41:34 : INFO : Done. -parsing GTF file: /tmp/nxf.UqHZd5TehN/fi_workdir/aih-tih-sc-6c4b48-R1_A23YTGFLT4_1.gtf -parsing /tmp/nxf.UqHZd5TehN/fi_workdir/aih-tih-sc-6c4b48-R1_A23YTGFLT4_1.star.cSorted.dupsMarked.bam [10000] [20000] [30000] [40000] [50000] [60000] [70000] [80000] [90000] [100000] [110000] [120000] [130000] [140000] [150000] [160000] [170000] [180000] [190000] [200000] [210000] [220000] [230000] [240000] [250000] [260000] [270000] [280000] [290000] [300000] [310000] [320000] [330000] [340000] [350000] [360000] [370000] [380000] [390000] [400000] [410000] [420000] [430000] [440000] [450000] [460000] [470000] [480000] [490000] [500000] [510000] [520000] [530000] [540000] [550000] [560000] [570000] [580000] [590000] [600000] [610000] [620000] [630000] [640000] [650000] [660000] [670000] [680000] [690000] [700000] [710000] 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[2740000] [2750000] [2760000] [2770000] [2780000] [2790000] [2800000] [2810000] [2820000] [2830000] [2840000] [2850000] [2860000] [2870000] [2880000] [2890000] [2900000] [2910000] [2920000] [2930000] [2940000] [2950000] [2960000] [2970000] [2980000] [2990000] [3000000] [3010000] [3020000] [3030000] [3040000] [3050000] [3060000] [3070000] [3080000] [3090000] [3100000] [3110000] [3120000] [3130000] [3140000] [3150000] [3160000] [3170000] [3180000] [3190000] [3200000] [3210000] [3220000] [3230000] [3240000] [3250000] [3260000] [3270000] [3280000] [3290000] [3300000] [3310000] [3320000] [3330000] [3340000] [3350000] [3360000] [3370000] [3380000] [3390000] [3400000] [3410000] [3420000] [3430000] [3440000] [3450000] [3460000] [3470000] [3480000] [3490000] [3500000] [3510000] [3520000] [3530000] [3540000] [3550000] [3560000] [3570000] [3580000] [3590000] [3600000] [3610000] [3620000] [3630000] [3640000] [3650000] [3660000] [3670000] [3680000] [3690000] [3700000] [3710000] [3720000] [3730000] [3740000] [3750000] [3760000] [3770000] [3780000] [3790000] [3800000] [3810000] [3820000] [3830000] [3840000] [3850000] [3860000] [3870000] [3880000] [3890000] [3900000] [3910000] [3920000] [3930000] [3940000] [3950000] [3960000] [3970000] [3980000] [3990000] [4000000] [4010000] [4020000] [4030000] [4040000] [4050000] [4060000] [4070000] [4080000] [4090000] [4100000] [4110000] [4120000] [4130000] [4140000] [4150000] [4160000] [4170000] [4180000] [4190000] [4200000] [4210000] [4220000] [4230000] [4240000] [4250000] [4260000] [4270000] [4280000] [4290000] [4300000] [4310000] [4320000] [4330000] [4340000] [4350000] [4360000] [4370000] [4380000] [4390000] [4400000] [4410000] [4420000] [4430000] [4440000] [4450000] [4460000] [4470000] [4480000] [4490000] [4500000] [4510000] [4520000] [4530000] [4540000] [4550000] [4560000] [4570000] [4580000] [4590000] [4600000] [4610000] [4620000] [4630000] [4640000] [4650000] [4660000] [4670000] [4680000] [4690000] [4700000] -done parsing /tmp/nxf.UqHZd5TehN/fi_workdir/aih-tih-sc-6c4b48-R1_A23YTGFLT4_1.star.cSorted.dupsMarked.bam. Extracting junction info. junction read elimination tally: $VAR1 = { 'low complexity anchor region' => 9, 'num_hits: 2 != num_counted_on_fusion_contigs 1 ' => 360, 'num genes matched < 2' => 66, 'num_hits: 5 != num_counted_on_fusion_contigs 3 ' => 12, 'num_hits: 3 != num_counted_on_fusion_contigs 2 ' => 138, 'num_hits: 3 != num_counted_on_fusion_contigs 1 ' => 612, 'small anchor length' => 41, ' ** passed ** ' => 14813, 'exons hit < 2' => 2, 'num_hits: 5 != num_counted_on_fusion_contigs 4 ' => 8, 'num_hits: 5 != num_counted_on_fusion_contigs 1 ' => 1, 'excessive soft clipping' => 24232, 'per_id < 96' => 15417, 'num_hits: 4 != num_counted_on_fusion_contigs 2 ' => 88, 'num_hits: 4 != num_counted_on_fusion_contigs 3 ' => 33, 'num_hits: 4 != num_counted_on_fusion_contigs 1 ' => 4 }; -writing fusion junction support info. -outputting the spanning read info: /tmp/nxf.UqHZd5TehN/fi_workdir/aih-tih-sc-6c4b48-R1_A23YTGFLT4_1.star.cSorted.dupsMarked.bam.fusion_spanning_info. - counting read alignments among fusion contigs. [1000] [2000] [3000] [4000] [5000] [6000] [7000] [8000] [9000] [10000] [11000] [12000] [13000] [14000] [15000] [16000] [17000] [18000] [19000] [20000] [21000] [22000] [23000] [24000] [25000] [26000] [27000] [28000] [29000] [30000] [31000] [32000] [33000] [34000] [35000] [36000] [37000] [38000] [39000] [40000] [41000] [42000] [43000] [44000] [45000] [46000] [47000] [48000] [49000] [50000] [51000] [52000] [53000] [54000] [55000] [56000] [57000] [58000] [59000] [60000] [61000] [62000] [63000] [64000] [65000] [66000] [67000] [68000] [69000] [70000] [71000] [72000] [73000] [74000] [75000] [76000] [77000] [78000] [79000] [80000] [81000] [82000] [83000] [84000] [85000] [86000] [87000] [88000] [89000] [90000] [91000] [92000] [93000] [94000] [95000] [96000] [97000] [98000] [99000] [100000] [101000] [102000] [103000] [104000] [105000] [106000] [107000] [108000] [109000] [110000] [111000] [112000] [113000] [114000] [115000] [116000] [117000] [118000] [119000] [120000] [121000] [122000] [123000] [124000] [125000] [126000] [127000] [128000] [129000] [130000] [131000] [132000] [133000] [134000] [135000] [136000] [137000] [138000] [139000] [140000] [141000] [142000] [143000] [144000] [145000] [146000] [147000] [148000] [149000] [150000] [151000] [152000] [153000] [154000] [155000] [156000] [157000] [158000] [159000] [160000] [161000] [162000] [163000] [164000] [165000] [166000] [167000] [168000] [169000] [170000] [171000] [172000] [173000] [174000] [175000] [176000] [177000] [178000] [179000] [180000] [181000] [182000] [183000] [184000] [185000] [186000] [187000] [188000] [189000] [190000] [191000] [192000] [193000] [194000] [195000] [196000] [197000] [198000] [199000] [200000] [201000] [202000] [203000] [204000] [205000] [206000] [207000] [208000] [209000] [210000] [211000] [212000] [213000] [214000] [215000] [216000] [217000] [218000] [219000] [220000] [221000] [222000] [223000] [224000] [225000] [226000] -fusion SPANNING read extraction for scaff: AC060780.1--ANKS1A [1000] [2000] [3000] [4000] [5000] [6000] [7000] [8000] [9000] [10000] [11000] [12000] [13000] [14000] [15000] [16000] [17000] [18000] [19000] [20000] [21000] [22000] [23000] -fusion SPANNING read extraction for scaff: ARG2--MPP5 [1000] [2000] [3000] [4000] [5000] [6000] [7000] [8000] [9000] [10000] [11000] [12000] [13000] [14000] [15000] [16000] [17000] [18000] [19000] [20000] [21000] [22000] [23000] [24000] [25000] [26000] [27000] [28000] [29000] [30000] [31000] [32000] [33000] [34000] [35000] [36000] [37000] [38000] [39000] [40000] [41000] [42000] [43000] [44000] [45000] [46000] [47000] [48000] [49000] [50000] [51000] [52000] [53000] [54000] [55000] [56000] [57000] [58000] [59000] [60000] [61000] [62000] [63000] [64000] [65000] [66000] [67000] [68000] [69000] [70000] [71000] [72000] [73000] [74000] [75000] [76000] [77000] [78000] [79000] [80000] [81000] [82000] [83000] [84000] [85000] [86000] [87000] [88000] [89000] [90000] [91000] [92000] [93000] [94000] [95000] [96000] [97000] [98000] [99000] [100000] [101000] [102000] [103000] [104000] [105000] [106000] [107000] [108000] [109000] [110000] [111000] [112000] [113000] [114000] [115000] [116000] [117000] [118000] [119000] [120000] [121000] [122000] [123000] [124000] [125000] [126000] [127000] [128000] [129000] [130000] [131000] [132000] [133000] [134000] [135000] [136000] [137000] [138000] [139000] [140000] [141000] [142000] [143000] [144000] [145000] [146000] [147000] [148000] [149000] [150000] [151000] [152000] [153000] [154000] [155000] [156000] [157000] [158000] [159000] [160000] [161000] [162000] [163000] [164000] [165000] [166000] [167000] [168000] -fusion SPANNING read extraction for scaff: BCKDHA--ANKRD27 [1000] [2000] [3000] [4000] [5000] [6000] [7000] [8000] [9000] [10000] [11000] [12000] [13000] [14000] [15000] [16000] [17000] [18000] [19000] [20000] [21000] [22000] [23000] [24000] [25000] [26000] [27000] [28000] [29000] [30000] [31000] [32000] [33000] [34000] [35000] [36000] [37000] [38000] [39000] [40000] [41000] [42000] [43000] [44000] [45000] [46000] [47000] [48000] [49000] [50000] [51000] [52000] [53000] [54000] [55000] [56000] [57000] [58000] [59000] [60000] [61000] [62000] [63000] [64000] [65000] [66000] [67000] [68000] [69000] [70000] [71000] [72000] [73000] [74000] [75000] [76000] [77000] [78000] [79000] [80000] [81000] [82000] [83000] [84000] [85000] [86000] [87000] [88000] [89000] [90000] [91000] [92000] [93000] [94000] [95000] [96000] [97000] [98000] [99000] [100000] [101000] [102000] [103000] [104000] [105000] [106000] [107000] [108000] [109000] [110000] [111000] [112000] [113000] [114000] [115000] [116000] [117000] [118000] [119000] [120000] [121000] [122000] [123000] [124000] [125000] [126000] [127000] [128000] [129000] [130000] [131000] [132000] [133000] [134000] [135000] [136000] [137000] [138000] [139000] [140000] [141000] [142000] [143000] [144000] [145000] [146000] [147000] [148000] [149000] [150000] [151000] [152000] [153000] [154000] [155000] [156000] [157000] [158000] [159000] [160000] [161000] [162000] [163000] [164000] [165000] [166000] [167000] -fusion SPANNING read extraction for scaff: CAMK1D--ZNF345 [1000] [2000] [3000] [4000] [5000] [6000] [7000] [8000] [9000] [10000] [11000] [12000] [13000] [14000] [15000] [16000] [17000] [18000] [19000] [20000] [21000] [22000] [23000] [24000] [25000] [26000] [27000] [28000] [29000] [30000] [31000] [32000] [33000] [34000] [35000] [36000] [37000] [38000] [39000] [40000] [41000] [42000] [43000] [44000] [45000] [46000] [47000] [48000] [49000] [50000] [51000] [52000] [53000] [54000] [55000] [56000] [57000] [58000] [59000] [60000] [61000] [62000] [63000] [64000] [65000] [66000] [67000] [68000] [69000] [70000] [71000] [72000] [73000] [74000] [75000] [76000] [77000] [78000] [79000] [80000] [81000] [82000] [83000] [84000] [85000] [86000] [87000] [88000] [89000] [90000] [91000] [92000] [93000] [94000] [95000] [96000] [97000] [98000] [99000] [100000] [101000] [102000] [103000] [104000] [105000] [106000] [107000] [108000] [109000] [110000] [111000] [112000] [113000] [114000] [115000] [116000] [117000] [118000] [119000] [120000] [121000] [122000] [123000] [124000] [125000] [126000] [127000] [128000] [129000] [130000] [131000] [132000] [133000] [134000] [135000] [136000] [137000] [138000] [139000] [140000] [141000] [142000] [143000] [144000] [145000] [146000] [147000] [148000] [149000] [150000] [151000] [152000] [153000] [154000] [155000] [156000] [157000] [158000] [159000] [160000] [161000] -fusion SPANNING read extraction for scaff: CYP20A1--NBEAL1 [1000] [2000] [3000] [4000] [5000] [6000] [7000] [8000] [9000] [10000] [11000] [12000] [13000] [14000] [15000] [16000] [17000] [18000] [19000] [20000] [21000] [22000] [23000] [24000] [25000] [26000] [27000] [28000] [29000] [30000] [31000] [32000] [33000] [34000] [35000] [36000] [37000] [38000] [39000] [40000] [41000] [42000] [43000] [44000] [45000] [46000] [47000] [48000] [49000] [50000] [51000] [52000] [53000] [54000] [55000] [56000] -fusion SPANNING read extraction for scaff: EML1--SLC20A2 [1000] [2000] [3000] [4000] [5000] [6000] [7000] [8000] [9000] [10000] [11000] [12000] [13000] [14000] [15000] [16000] [17000] [18000] [19000] [20000] [21000] [22000] [23000] [24000] [25000] [26000] [27000] [28000] [29000] [30000] [31000] [32000] [33000] [34000] [35000] [36000] [37000] [38000] [39000] [40000] [41000] [42000] [43000] [44000] [45000] [46000] [47000] [48000] [49000] [50000] [51000] [52000] [53000] [54000] [55000] [56000] [57000] [58000] [59000] [60000] [61000] [62000] [63000] [64000] [65000] [66000] [67000] [68000] [69000] [70000] [71000] [72000] [73000] [74000] [75000] [76000] [77000] [78000] [79000] [80000] [81000] [82000] [83000] [84000] [85000] [86000] [87000] [88000] [89000] [90000] [91000] [92000] [93000] [94000] [95000] [96000] [97000] [98000] [99000] [100000] [101000] [102000] [103000] [104000] [105000] [106000] [107000] [108000] [109000] [110000] [111000] [112000] [113000] [114000] [115000] [116000] [117000] [118000] [119000] [120000] [121000] [122000] [123000] [124000] [125000] [126000] [127000] [128000] [129000] [130000] [131000] [132000] [133000] [134000] -fusion SPANNING read extraction for scaff: ITCH--AL031668.2 [1000] [2000] [3000] [4000] [5000] [6000] [7000] [8000] [9000] [10000] [11000] [12000] [13000] [14000] [15000] [16000] [17000] [18000] [19000] [20000] [21000] [22000] [23000] [24000] [25000] [26000] [27000] [28000] [29000] [30000] [31000] [32000] [33000] [34000] [35000] [36000] [37000] [38000] [39000] [40000] [41000] [42000] [43000] [44000] [45000] [46000] [47000] [48000] [49000] [50000] [51000] [52000] [53000] [54000] [55000] [56000] [57000] [58000] [59000] [60000] [61000] [62000] [63000] [64000] [65000] [66000] [67000] [68000] [69000] [70000] [71000] [72000] [73000] [74000] [75000] [76000] [77000] [78000] [79000] [80000] [81000] [82000] [83000] [84000] [85000] [86000] [87000] [88000] [89000] [90000] [91000] [92000] [93000] [94000] [95000] [96000] [97000] [98000] [99000] [100000] [101000] [102000] [103000] [104000] [105000] [106000] [107000] [108000] [109000] [110000] [111000] [112000] [113000] [114000] [115000] [116000] [117000] [118000] [119000] [120000] [121000] [122000] [123000] [124000] [125000] [126000] [127000] [128000] [129000] [130000] [131000] [132000] [133000] [134000] [135000] -fusion SPANNING read extraction for scaff: ITCH--ASIP [1000] [2000] [3000] [4000] [5000] [6000] [7000] [8000] [9000] [10000] [11000] [12000] [13000] [14000] [15000] [16000] [17000] [18000] [19000] [20000] [21000] [22000] [23000] [24000] [25000] [26000] [27000] [28000] [29000] [30000] [31000] [32000] [33000] [34000] [35000] [36000] [37000] [38000] [39000] [40000] -fusion SPANNING read extraction for scaff: LRRC1--RPL31P33 [1000] [2000] [3000] [4000] [5000] [6000] [7000] [8000] [9000] [10000] [11000] [12000] [13000] [14000] [15000] [16000] [17000] [18000] [19000] [20000] [21000] [22000] [23000] [24000] [25000] [26000] [27000] [28000] [29000] [30000] [31000] [32000] [33000] [34000] [35000] [36000] [37000] [38000] [39000] [40000] [41000] [42000] [43000] [44000] [45000] [46000] [47000] [48000] [49000] [50000] [51000] [52000] [53000] [54000] [55000] [56000] [57000] [58000] [59000] [60000] [61000] [62000] [63000] [64000] [65000] [66000] [67000] [68000] [69000] [70000] [71000] [72000] [73000] [74000] [75000] [76000] [77000] [78000] [79000] [80000] -fusion SPANNING read extraction for scaff: LUC7L3--SERHL [1000] [2000] [3000] [4000] [5000] [6000] [7000] [8000] [9000] [10000] [11000] [12000] [13000] [14000] [15000] [16000] [17000] [18000] [19000] [20000] [21000] [22000] [23000] [24000] [25000] [26000] [27000] [28000] [29000] [30000] [31000] [32000] [33000] [34000] [35000] [36000] [37000] [38000] [39000] [40000] [41000] [42000] [43000] [44000] [45000] [46000] [47000] [48000] [49000] [50000] [51000] [52000] [53000] [54000] [55000] [56000] [57000] [58000] [59000] [60000] [61000] [62000] [63000] [64000] [65000] [66000] [67000] [68000] [69000] [70000] [71000] [72000] [73000] [74000] [75000] [76000] [77000] [78000] [79000] [80000] -fusion SPANNING read extraction for scaff: METTL17--PRR14L [1000] [2000] [3000] [4000] [5000] [6000] [7000] [8000] [9000] [10000] [11000] [12000] [13000] [14000] [15000] [16000] -fusion SPANNING read extraction for scaff: MRPL48--PLEKHB1 [1000] [2000] [3000] [4000] [5000] [6000] [7000] [8000] [9000] [10000] [11000] [12000] [13000] [14000] [15000] [16000] [17000] [18000] [19000] [20000] [21000] [22000] [23000] [24000] [25000] [26000] [27000] [28000] [29000] [30000] [31000] [32000] [33000] [34000] [35000] [36000] [37000] [38000] [39000] [40000] [41000] [42000] [43000] [44000] [45000] [46000] [47000] [48000] [49000] [50000] [51000] [52000] [53000] [54000] [55000] [56000] [57000] [58000] [59000] [60000] [61000] [62000] [63000] [64000] [65000] [66000] [67000] [68000] [69000] [70000] [71000] [72000] [73000] [74000] [75000] [76000] [77000] [78000] [79000] [80000] [81000] [82000] [83000] [84000] [85000] [86000] [87000] [88000] [89000] [90000] [91000] [92000] [93000] [94000] [95000] [96000] [97000] [98000] [99000] [100000] [101000] [102000] [103000] [104000] [105000] [106000] [107000] [108000] [109000] [110000] [111000] [112000] [113000] [114000] [115000] [116000] [117000] [118000] [119000] [120000] [121000] [122000] [123000] [124000] [125000] [126000] [127000] [128000] [129000] [130000] [131000] [132000] [133000] [134000] [135000] [136000] -fusion SPANNING read extraction for scaff: NCOR1--FTLP12 [1000] [2000] [3000] [4000] [5000] [6000] [7000] [8000] [9000] [10000] [11000] [12000] [13000] [14000] [15000] [16000] [17000] [18000] [19000] [20000] [21000] [22000] [23000] [24000] [25000] [26000] [27000] [28000] [29000] [30000] [31000] [32000] [33000] [34000] [35000] [36000] [37000] [38000] [39000] [40000] [41000] [42000] [43000] [44000] [45000] [46000] [47000] [48000] [49000] [50000] [51000] [52000] [53000] [54000] [55000] [56000] [57000] [58000] [59000] [60000] [61000] [62000] [63000] [64000] [65000] [66000] [67000] [68000] [69000] [70000] [71000] [72000] [73000] [74000] [75000] [76000] [77000] [78000] [79000] [80000] [81000] [82000] [83000] [84000] [85000] [86000] [87000] [88000] [89000] [90000] [91000] [92000] [93000] [94000] [95000] [96000] [97000] [98000] [99000] [100000] [101000] [102000] [103000] [104000] -fusion SPANNING read extraction for scaff: NFRKB--ZBTB44 [1000] [2000] [3000] [4000] [5000] [6000] [7000] [8000] [9000] [10000] [11000] [12000] [13000] [14000] [15000] [16000] [17000] [18000] [19000] [20000] [21000] [22000] [23000] [24000] [25000] [26000] [27000] [28000] [29000] [30000] [31000] [32000] [33000] [34000] [35000] [36000] [37000] [38000] [39000] [40000] [41000] [42000] [43000] [44000] [45000] [46000] [47000] [48000] [49000] [50000] [51000] [52000] [53000] [54000] [55000] [56000] [57000] [58000] [59000] [60000] [61000] [62000] [63000] [64000] [65000] [66000] [67000] [68000] [69000] [70000] [71000] [72000] [73000] [74000] [75000] [76000] [77000] [78000] [79000] [80000] [81000] [82000] [83000] [84000] [85000] [86000] [87000] [88000] [89000] [90000] [91000] [92000] [93000] [94000] [95000] [96000] -fusion SPANNING read extraction for scaff: NLRC5--NUP93 [1000] [2000] [3000] [4000] [5000] [6000] [7000] [8000] [9000] [10000] [11000] [12000] [13000] [14000] [15000] [16000] [17000] [18000] [19000] [20000] [21000] [22000] [23000] [24000] [25000] [26000] [27000] [28000] [29000] [30000] [31000] [32000] [33000] [34000] [35000] [36000] [37000] [38000] [39000] [40000] [41000] [42000] [43000] [44000] [45000] [46000] [47000] [48000] -fusion SPANNING read extraction for scaff: PARP8--RASGRF2 [1000] [2000] [3000] [4000] [5000] [6000] [7000] [8000] [9000] [10000] [11000] [12000] [13000] [14000] [15000] [16000] [17000] [18000] [19000] [20000] [21000] [22000] [23000] [24000] [25000] [26000] [27000] [28000] [29000] [30000] [31000] [32000] [33000] [34000] [35000] [36000] [37000] [38000] [39000] [40000] -fusion SPANNING read extraction for scaff: PCDHA6--PCDHA13 [1000] [2000] [3000] [4000] [5000] [6000] [7000] [8000] [9000] [10000] [11000] [12000] [13000] [14000] [15000] [16000] [17000] [18000] [19000] [20000] [21000] [22000] [23000] [24000] [25000] [26000] [27000] [28000] [29000] [30000] [31000] [32000] [33000] [34000] [35000] -fusion SPANNING read extraction for scaff: PCDHA6--PCDHAC2 [1000] [2000] [3000] [4000] [5000] [6000] [7000] [8000] [9000] [10000] [11000] [12000] [13000] [14000] [15000] [16000] [17000] [18000] [19000] [20000] [21000] [22000] [23000] [24000] [25000] [26000] [27000] [28000] [29000] [30000] [31000] [32000] [33000] [34000] [35000] [36000] [37000] [38000] [39000] [40000] -fusion SPANNING read extraction for scaff: PCDHA6--PCDHAC1 [1000] [2000] [3000] [4000] [5000] [6000] [7000] [8000] [9000] [10000] [11000] [12000] [13000] [14000] [15000] [16000] [17000] [18000] [19000] [20000] [21000] [22000] [23000] [24000] [25000] [26000] [27000] [28000] [29000] [30000] [31000] [32000] [33000] [34000] [35000] [36000] [37000] [38000] [39000] [40000] [41000] [42000] [43000] [44000] [45000] [46000] [47000] [48000] [49000] [50000] [51000] [52000] [53000] [54000] [55000] [56000] [57000] [58000] [59000] [60000] [61000] [62000] [63000] [64000] [65000] [66000] [67000] [68000] [69000] [70000] [71000] [72000] [73000] [74000] [75000] [76000] [77000] [78000] [79000] [80000] [81000] [82000] [83000] [84000] [85000] [86000] [87000] [88000] [89000] [90000] [91000] [92000] [93000] [94000] [95000] [96000] [97000] [98000] [99000] [100000] [101000] [102000] [103000] [104000] [105000] [106000] [107000] [108000] [109000] [110000] [111000] [112000] [113000] [114000] [115000] [116000] [117000] [118000] [119000] [120000] [121000] [122000] [123000] [124000] [125000] [126000] [127000] [128000] [129000] [130000] [131000] [132000] [133000] [134000] [135000] [136000] [137000] [138000] [139000] [140000] [141000] [142000] [143000] [144000] [145000] [146000] [147000] [148000] [149000] [150000] [151000] [152000] [153000] [154000] [155000] [156000] [157000] [158000] [159000] [160000] [161000] [162000] -fusion SPANNING read extraction for scaff: PNPO--KPNB1 [1000] [2000] [3000] [4000] [5000] [6000] [7000] [8000] [9000] [10000] [11000] [12000] [13000] [14000] [15000] [16000] [17000] [18000] [19000] [20000] [21000] [22000] [23000] [24000] [25000] [26000] [27000] [28000] [29000] [30000] [31000] [32000] [33000] [34000] [35000] [36000] [37000] [38000] [39000] [40000] [41000] [42000] [43000] [44000] [45000] [46000] [47000] [48000] [49000] [50000] [51000] [52000] [53000] [54000] [55000] [56000] [57000] [58000] [59000] [60000] [61000] [62000] [63000] [64000] [65000] [66000] [67000] [68000] [69000] [70000] [71000] [72000] [73000] [74000] [75000] [76000] [77000] [78000] [79000] [80000] [81000] [82000] [83000] [84000] [85000] [86000] [87000] [88000] [89000] -fusion SPANNING read extraction for scaff: PRDM15--YIF1B [1000] [2000] [3000] [4000] [5000] [6000] [7000] [8000] [9000] [10000] [11000] [12000] [13000] [14000] [15000] [16000] [17000] [18000] [19000] [20000] [21000] [22000] [23000] [24000] [25000] [26000] [27000] [28000] [29000] [30000] [31000] [32000] [33000] [34000] [35000] [36000] [37000] [38000] [39000] [40000] [41000] [42000] [43000] [44000] [45000] [46000] [47000] [48000] [49000] [50000] [51000] [52000] [53000] [54000] [55000] [56000] [57000] [58000] [59000] [60000] [61000] [62000] [63000] [64000] [65000] [66000] [67000] [68000] [69000] [70000] [71000] [72000] [73000] [74000] [75000] [76000] [77000] [78000] [79000] [80000] [81000] [82000] [83000] [84000] [85000] [86000] [87000] [88000] [89000] [90000] [91000] [92000] [93000] [94000] [95000] [96000] [97000] [98000] [99000] [100000] [101000] [102000] [103000] [104000] [105000] [106000] [107000] [108000] [109000] [110000] [111000] [112000] [113000] [114000] [115000] [116000] [117000] [118000] [119000] [120000] [121000] [122000] [123000] [124000] [125000] [126000] [127000] [128000] [129000] [130000] [131000] [132000] [133000] [134000] [135000] [136000] [137000] [138000] [139000] [140000] [141000] [142000] [143000] [144000] [145000] [146000] [147000] [148000] [149000] [150000] [151000] [152000] [153000] [154000] [155000] [156000] [157000] [158000] [159000] [160000] [161000] [162000] [163000] [164000] [165000] [166000] [167000] [168000] [169000] [170000] [171000] [172000] [173000] [174000] [175000] [176000] [177000] [178000] [179000] [180000] [181000] [182000] [183000] [184000] [185000] [186000] [187000] [188000] [189000] [190000] [191000] [192000] [193000] [194000] [195000] [196000] [197000] [198000] [199000] [200000] [201000] [202000] [203000] [204000] [205000] -fusion SPANNING read extraction for scaff: RBM14--RBM4 [1000] [2000] [3000] [4000] [5000] [6000] [7000] [8000] [9000] [10000] [11000] [12000] [13000] [14000] [15000] [16000] [17000] [18000] [19000] [20000] [21000] [22000] [23000] [24000] [25000] [26000] [27000] [28000] [29000] [30000] [31000] [32000] [33000] [34000] [35000] [36000] [37000] [38000] [39000] [40000] [41000] [42000] [43000] [44000] [45000] [46000] [47000] [48000] [49000] [50000] [51000] [52000] [53000] [54000] [55000] [56000] [57000] [58000] [59000] [60000] [61000] [62000] [63000] [64000] [65000] [66000] [67000] [68000] [69000] [70000] [71000] [72000] [73000] [74000] [75000] [76000] [77000] [78000] [79000] [80000] [81000] [82000] [83000] [84000] [85000] [86000] [87000] [88000] [89000] [90000] [91000] [92000] [93000] [94000] [95000] [96000] [97000] [98000] [99000] [100000] [101000] [102000] [103000] [104000] [105000] [106000] [107000] [108000] [109000] [110000] [111000] [112000] [113000] [114000] [115000] [116000] [117000] [118000] [119000] [120000] [121000] [122000] [123000] [124000] [125000] [126000] [127000] [128000] [129000] [130000] [131000] [132000] [133000] [134000] [135000] [136000] [137000] [138000] [139000] [140000] [141000] [142000] [143000] [144000] [145000] [146000] [147000] [148000] [149000] [150000] [151000] [152000] [153000] [154000] [155000] [156000] [157000] [158000] [159000] [160000] [161000] [162000] [163000] [164000] [165000] [166000] [167000] [168000] [169000] [170000] [171000] [172000] [173000] [174000] [175000] [176000] [177000] [178000] [179000] [180000] [181000] [182000] [183000] [184000] [185000] [186000] [187000] [188000] [189000] [190000] [191000] [192000] [193000] [194000] [195000] [196000] [197000] [198000] [199000] [200000] [201000] [202000] [203000] [204000] [205000] [206000] [207000] [208000] [209000] [210000] [211000] [212000] [213000] [214000] [215000] [216000] [217000] [218000] [219000] [220000] [221000] [222000] [223000] [224000] [225000] [226000] [227000] [228000] [229000] [230000] [231000] [232000] [233000] [234000] [235000] [236000] [237000] [238000] [239000] [240000] [241000] [242000] [243000] [244000] [245000] [246000] [247000] [248000] [249000] [250000] [251000] [252000] [253000] [254000] [255000] [256000] [257000] [258000] [259000] [260000] [261000] [262000] [263000] [264000] [265000] [266000] [267000] [268000] [269000] [270000] [271000] [272000] [273000] [274000] [275000] [276000] [277000] [278000] [279000] [280000] [281000] [282000] [283000] [284000] [285000] [286000] [287000] [288000] [289000] [290000] [291000] [292000] [293000] [294000] [295000] [296000] [297000] [298000] [299000] [300000] [301000] [302000] [303000] [304000] [305000] [306000] [307000] [308000] [309000] [310000] [311000] [312000] [313000] [314000] [315000] [316000] [317000] [318000] [319000] [320000] [321000] [322000] [323000] [324000] [325000] [326000] [327000] [328000] [329000] [330000] [331000] [332000] [333000] [334000] [335000] [336000] [337000] [338000] [339000] [340000] [341000] [342000] [343000] [344000] [345000] [346000] [347000] [348000] [349000] [350000] [351000] [352000] [353000] [354000] [355000] [356000] [357000] [358000] [359000] [360000] [361000] [362000] [363000] [364000] [365000] [366000] [367000] [368000] [369000] [370000] [371000] [372000] [373000] [374000] [375000] [376000] [377000] [378000] [379000] [380000] [381000] [382000] [383000] [384000] [385000] [386000] [387000] [388000] [389000] [390000] [391000] [392000] [393000] [394000] -fusion SPANNING read extraction for scaff: RCAN3--GRHL3 [1000] [2000] [3000] [4000] [5000] [6000] [7000] [8000] [9000] [10000] [11000] [12000] [13000] [14000] [15000] [16000] [17000] [18000] [19000] [20000] [21000] [22000] [23000] [24000] [25000] [26000] [27000] [28000] [29000] [30000] [31000] [32000] [33000] [34000] [35000] [36000] [37000] [38000] [39000] [40000] [41000] [42000] [43000] [44000] [45000] [46000] [47000] [48000] [49000] [50000] [51000] [52000] [53000] [54000] [55000] [56000] [57000] [58000] [59000] [60000] [61000] [62000] [63000] [64000] [65000] [66000] [67000] [68000] [69000] [70000] [71000] [72000] [73000] [74000] [75000] [76000] [77000] [78000] [79000] [80000] [81000] [82000] [83000] [84000] [85000] [86000] [87000] [88000] [89000] [90000] [91000] [92000] [93000] [94000] [95000] [96000] [97000] [98000] [99000] [100000] [101000] [102000] [103000] [104000] [105000] [106000] [107000] [108000] [109000] [110000] [111000] [112000] [113000] [114000] [115000] [116000] [117000] [118000] [119000] [120000] [121000] [122000] [123000] [124000] [125000] [126000] [127000] [128000] [129000] [130000] [131000] [132000] [133000] [134000] [135000] [136000] [137000] [138000] [139000] [140000] [141000] [142000] [143000] -fusion SPANNING read extraction for scaff: RIT1--SMG5 [1000] [2000] [3000] [4000] [5000] [6000] [7000] [8000] [9000] [10000] [11000] [12000] [13000] [14000] [15000] [16000] [17000] [18000] [19000] [20000] [21000] [22000] [23000] [24000] [25000] [26000] [27000] [28000] [29000] [30000] [31000] [32000] [33000] [34000] [35000] [36000] [37000] [38000] [39000] [40000] -fusion SPANNING read extraction for scaff: SFI1--RNF185 [1000] [2000] [3000] [4000] [5000] [6000] [7000] [8000] [9000] [10000] [11000] [12000] [13000] [14000] [15000] [16000] [17000] [18000] [19000] [20000] [21000] [22000] [23000] [24000] [25000] [26000] [27000] [28000] [29000] [30000] [31000] [32000] [33000] [34000] [35000] [36000] [37000] [38000] [39000] [40000] [41000] [42000] [43000] [44000] [45000] [46000] [47000] [48000] [49000] [50000] [51000] [52000] [53000] [54000] [55000] [56000] [57000] [58000] [59000] [60000] [61000] [62000] [63000] [64000] [65000] [66000] [67000] [68000] [69000] [70000] [71000] [72000] [73000] [74000] [75000] [76000] [77000] [78000] [79000] [80000] [81000] [82000] [83000] [84000] [85000] [86000] [87000] [88000] [89000] [90000] [91000] [92000] [93000] [94000] [95000] [96000] [97000] [98000] [99000] [100000] [101000] [102000] [103000] [104000] [105000] [106000] [107000] [108000] [109000] [110000] [111000] [112000] [113000] [114000] [115000] [116000] [117000] [118000] [119000] [120000] [121000] [122000] [123000] [124000] [125000] [126000] [127000] [128000] [129000] [130000] [131000] [132000] [133000] [134000] [135000] [136000] [137000] [138000] [139000] [140000] [141000] [142000] [143000] [144000] [145000] [146000] [147000] [148000] [149000] [150000] [151000] [152000] [153000] [154000] [155000] [156000] [157000] [158000] [159000] [160000] [161000] [162000] [163000] [164000] [165000] [166000] [167000] [168000] [169000] [170000] [171000] [172000] -fusion SPANNING read extraction for scaff: SLC10A4--SORBS2 [1000] [2000] [3000] [4000] [5000] [6000] [7000] [8000] [9000] [10000] [11000] [12000] [13000] [14000] [15000] [16000] [17000] [18000] [19000] [20000] [21000] [22000] [23000] [24000] [25000] [26000] [27000] [28000] [29000] [30000] [31000] [32000] [33000] [34000] [35000] [36000] [37000] [38000] [39000] [40000] [41000] [42000] [43000] [44000] [45000] [46000] [47000] [48000] [49000] [50000] [51000] [52000] [53000] [54000] [55000] [56000] [57000] [58000] [59000] [60000] -fusion SPANNING read extraction for scaff: SNX31--P3H2 [1000] [2000] [3000] [4000] [5000] [6000] [7000] [8000] [9000] [10000] [11000] [12000] [13000] [14000] [15000] [16000] [17000] [18000] [19000] [20000] [21000] [22000] [23000] [24000] [25000] [26000] [27000] [28000] [29000] [30000] [31000] [32000] [33000] [34000] [35000] [36000] [37000] [38000] [39000] [40000] [41000] [42000] [43000] [44000] [45000] [46000] [47000] [48000] [49000] [50000] [51000] [52000] [53000] [54000] [55000] [56000] [57000] [58000] [59000] [60000] [61000] [62000] [63000] [64000] [65000] [66000] [67000] [68000] [69000] [70000] [71000] [72000] [73000] [74000] [75000] [76000] [77000] [78000] [79000] [80000] [81000] [82000] [83000] [84000] [85000] [86000] [87000] [88000] [89000] [90000] [91000] [92000] [93000] [94000] [95000] [96000] [97000] [98000] [99000] [100000] [101000] [102000] [103000] [104000] [105000] [106000] [107000] [108000] [109000] [110000] [111000] [112000] [113000] [114000] [115000] [116000] [117000] [118000] [119000] [120000] [121000] [122000] [123000] [124000] [125000] [126000] [127000] [128000] [129000] [130000] [131000] [132000] [133000] [134000] [135000] [136000] [137000] [138000] [139000] [140000] [141000] [142000] [143000] [144000] [145000] [146000] [147000] [148000] [149000] [150000] [151000] [152000] [153000] [154000] [155000] [156000] [157000] [158000] [159000] [160000] [161000] -fusion SPANNING read extraction for scaff: SORBS2--ZAR1 [1000] [2000] [3000] [4000] [5000] [6000] [7000] [8000] [9000] [10000] [11000] [12000] [13000] [14000] [15000] [16000] [17000] [18000] [19000] [20000] [21000] [22000] [23000] [24000] [25000] [26000] [27000] [28000] [29000] [30000] [31000] [32000] [33000] [34000] [35000] [36000] [37000] [38000] [39000] [40000] [41000] [42000] [43000] [44000] [45000] [46000] [47000] [48000] [49000] [50000] [51000] [52000] [53000] [54000] [55000] [56000] [57000] [58000] [59000] [60000] [61000] [62000] [63000] [64000] [65000] [66000] [67000] [68000] [69000] [70000] [71000] [72000] [73000] [74000] [75000] [76000] [77000] [78000] [79000] [80000] [81000] [82000] [83000] [84000] [85000] [86000] [87000] [88000] [89000] [90000] [91000] [92000] [93000] [94000] [95000] [96000] [97000] [98000] [99000] [100000] [101000] [102000] [103000] [104000] [105000] [106000] [107000] [108000] [109000] [110000] [111000] [112000] [113000] [114000] [115000] [116000] [117000] [118000] [119000] [120000] [121000] [122000] [123000] [124000] [125000] [126000] [127000] [128000] [129000] [130000] [131000] [132000] [133000] [134000] [135000] [136000] [137000] [138000] [139000] [140000] [141000] [142000] [143000] [144000] [145000] [146000] [147000] [148000] [149000] [150000] [151000] [152000] [153000] [154000] [155000] [156000] [157000] [158000] [159000] [160000] [161000] [162000] [163000] [164000] [165000] [166000] [167000] [168000] [169000] [170000] [171000] [172000] [173000] [174000] [175000] [176000] [177000] [178000] [179000] [180000] [181000] [182000] [183000] [184000] [185000] [186000] [187000] [188000] [189000] [190000] [191000] [192000] [193000] [194000] [195000] [196000] [197000] [198000] [199000] [200000] [201000] [202000] [203000] [204000] [205000] [206000] [207000] [208000] [209000] [210000] [211000] [212000] [213000] [214000] [215000] [216000] [217000] [218000] [219000] [220000] [221000] [222000] [223000] [224000] [225000] [226000] [227000] [228000] [229000] [230000] [231000] [232000] [233000] [234000] [235000] [236000] [237000] [238000] [239000] [240000] [241000] [242000] [243000] [244000] [245000] [246000] [247000] [248000] [249000] [250000] [251000] [252000] [253000] [254000] [255000] [256000] [257000] [258000] [259000] [260000] [261000] [262000] [263000] [264000] [265000] [266000] [267000] [268000] [269000] [270000] [271000] [272000] [273000] [274000] [275000] [276000] [277000] [278000] [279000] [280000] [281000] [282000] [283000] [284000] [285000] [286000] [287000] [288000] [289000] [290000] [291000] [292000] [293000] [294000] [295000] [296000] [297000] [298000] [299000] [300000] [301000] [302000] [303000] [304000] [305000] [306000] [307000] [308000] [309000] [310000] [311000] [312000] [313000] [314000] [315000] [316000] [317000] [318000] [319000] [320000] [321000] [322000] [323000] [324000] [325000] [326000] [327000] [328000] [329000] [330000] [331000] [332000] [333000] [334000] [335000] [336000] [337000] [338000] [339000] [340000] [341000] [342000] [343000] [344000] [345000] [346000] [347000] [348000] [349000] [350000] [351000] [352000] [353000] [354000] [355000] [356000] [357000] [358000] [359000] [360000] [361000] [362000] [363000] [364000] [365000] [366000] [367000] [368000] [369000] [370000] [371000] [372000] [373000] [374000] [375000] [376000] [377000] [378000] [379000] [380000] [381000] [382000] [383000] [384000] [385000] [386000] [387000] [388000] [389000] [390000] [391000] [392000] [393000] [394000] [395000] [396000] [397000] [398000] [399000] [400000] [401000] [402000] [403000] [404000] [405000] [406000] [407000] [408000] [409000] [410000] [411000] [412000] [413000] [414000] [415000] [416000] [417000] [418000] [419000] [420000] [421000] [422000] [423000] [424000] [425000] [426000] [427000] [428000] [429000] [430000] [431000] [432000] [433000] [434000] [435000] [436000] [437000] [438000] [439000] [440000] [441000] [442000] [443000] [444000] [445000] [446000] [447000] [448000] [449000] [450000] [451000] [452000] [453000] [454000] [455000] [456000] [457000] [458000] [459000] [460000] [461000] [462000] [463000] [464000] [465000] [466000] [467000] [468000] [469000] [470000] [471000] [472000] [473000] [474000] [475000] [476000] [477000] [478000] [479000] [480000] [481000] [482000] [483000] [484000] [485000] [486000] [487000] [488000] [489000] [490000] [491000] [492000] [493000] [494000] [495000] [496000] [497000] [498000] [499000] [500000] [501000] [502000] [503000] [504000] [505000] [506000] [507000] [508000] [509000] [510000] [511000] [512000] [513000] [514000] [515000] [516000] [517000] [518000] [519000] [520000] [521000] [522000] [523000] [524000] [525000] [526000] [527000] [528000] [529000] [530000] [531000] [532000] [533000] [534000] [535000] [536000] [537000] [538000] [539000] [540000] [541000] [542000] [543000] [544000] [545000] [546000] [547000] [548000] [549000] [550000] [551000] [552000] [553000] [554000] [555000] [556000] [557000] [558000] [559000] [560000] [561000] [562000] [563000] [564000] [565000] [566000] [567000] [568000] [569000] [570000] [571000] [572000] [573000] [574000] [575000] [576000] [577000] [578000] [579000] [580000] [581000] [582000] [583000] [584000] [585000] [586000] [587000] [588000] [589000] [590000] [591000] [592000] [593000] [594000] [595000] [596000] [597000] [598000] [599000] [600000] [601000] [602000] [603000] [604000] [605000] [606000] [607000] [608000] [609000] [610000] [611000] [612000] [613000] [614000] [615000] [616000] [617000] [618000] [619000] [620000] [621000] [622000] [623000] [624000] [625000] [626000] [627000] [628000] [629000] [630000] [631000] [632000] [633000] [634000] [635000] [636000] [637000] [638000] [639000] [640000] [641000] [642000] [643000] [644000] [645000] [646000] [647000] [648000] [649000] [650000] [651000] [652000] [653000] [654000] [655000] [656000] [657000] [658000] [659000] [660000] [661000] [662000] [663000] [664000] [665000] [666000] [667000] [668000] [669000] [670000] [671000] [672000] [673000] [674000] [675000] [676000] [677000] [678000] [679000] [680000] [681000] [682000] [683000] [684000] [685000] [686000] [687000] [688000] [689000] [690000] [691000] [692000] [693000] [694000] [695000] [696000] [697000] [698000] [699000] [700000] [701000] [702000] [703000] [704000] [705000] [706000] [707000] [708000] [709000] [710000] [711000] [712000] [713000] [714000] [715000] [716000] [717000] [718000] [719000] [720000] [721000] [722000] [723000] [724000] [725000] [726000] [727000] [728000] [729000] [730000] [731000] [732000] [733000] [734000] [735000] [736000] [737000] [738000] [739000] [740000] [741000] [742000] [743000] [744000] [745000] [746000] [747000] [748000] [749000] [750000] [751000] [752000] [753000] [754000] [755000] [756000] [757000] [758000] [759000] [760000] [761000] [762000] [763000] [764000] [765000] [766000] [767000] [768000] [769000] [770000] [771000] [772000] [773000] [774000] [775000] [776000] [777000] [778000] [779000] [780000] [781000] [782000] [783000] [784000] [785000] [786000] [787000] [788000] [789000] [790000] [791000] [792000] [793000] [794000] [795000] [796000] [797000] [798000] [799000] [800000] [801000] [802000] [803000] -fusion SPANNING read extraction for scaff: SPINT2--SIPA1L3 [1000] [2000] [3000] [4000] [5000] [6000] [7000] [8000] [9000] [10000] [11000] [12000] [13000] [14000] [15000] [16000] [17000] [18000] [19000] [20000] [21000] [22000] [23000] [24000] [25000] [26000] [27000] [28000] [29000] [30000] [31000] [32000] [33000] [34000] [35000] [36000] [37000] [38000] [39000] [40000] [41000] [42000] [43000] [44000] [45000] [46000] [47000] [48000] [49000] [50000] [51000] [52000] [53000] [54000] [55000] [56000] [57000] [58000] [59000] [60000] [61000] [62000] [63000] [64000] [65000] [66000] [67000] [68000] [69000] [70000] [71000] [72000] [73000] -fusion SPANNING read extraction for scaff: STX16--NPEPL1 [1000] [2000] [3000] [4000] [5000] [6000] [7000] [8000] [9000] [10000] [11000] [12000] [13000] [14000] [15000] [16000] [17000] [18000] [19000] [20000] [21000] [22000] [23000] [24000] [25000] [26000] [27000] [28000] [29000] [30000] [31000] [32000] [33000] [34000] [35000] [36000] [37000] [38000] [39000] [40000] [41000] [42000] -fusion SPANNING read extraction for scaff: TBC1D19--RBPJ [1000] [2000] [3000] [4000] [5000] [6000] [7000] [8000] [9000] [10000] [11000] [12000] [13000] [14000] [15000] [16000] [17000] [18000] [19000] [20000] [21000] [22000] [23000] [24000] [25000] [26000] [27000] [28000] [29000] [30000] [31000] [32000] [33000] [34000] [35000] [36000] [37000] [38000] [39000] [40000] [41000] [42000] [43000] [44000] [45000] [46000] [47000] [48000] [49000] [50000] [51000] [52000] [53000] [54000] [55000] [56000] [57000] [58000] [59000] [60000] [61000] [62000] [63000] [64000] [65000] [66000] [67000] [68000] [69000] [70000] [71000] [72000] [73000] [74000] [75000] [76000] [77000] [78000] [79000] [80000] [81000] [82000] [83000] [84000] [85000] [86000] [87000] [88000] [89000] [90000] [91000] [92000] [93000] [94000] [95000] [96000] [97000] [98000] [99000] [100000] [101000] [102000] [103000] [104000] [105000] [106000] [107000] [108000] [109000] [110000] [111000] [112000] [113000] [114000] [115000] [116000] [117000] [118000] [119000] [120000] [121000] [122000] [123000] [124000] [125000] [126000] [127000] [128000] [129000] [130000] [131000] [132000] [133000] [134000] [135000] [136000] [137000] [138000] [139000] [140000] [141000] [142000] [143000] [144000] [145000] [146000] [147000] [148000] [149000] [150000] [151000] [152000] [153000] [154000] [155000] [156000] [157000] [158000] [159000] [160000] [161000] [162000] [163000] [164000] [165000] [166000] [167000] [168000] [169000] -fusion SPANNING read extraction for scaff: TEPSIN--NPLOC4 [1000] [2000] [3000] [4000] [5000] [6000] [7000] [8000] [9000] [10000] [11000] [12000] [13000] [14000] [15000] [16000] [17000] [18000] [19000] [20000] [21000] [22000] [23000] [24000] [25000] [26000] [27000] [28000] [29000] [30000] [31000] [32000] [33000] [34000] [35000] [36000] [37000] [38000] [39000] [40000] [41000] [42000] -fusion SPANNING read extraction for scaff: TLK2--AC240565.1 [1000] [2000] [3000] [4000] [5000] [6000] [7000] [8000] [9000] [10000] [11000] [12000] [13000] [14000] [15000] [16000] [17000] [18000] [19000] [20000] [21000] [22000] [23000] [24000] [25000] [26000] [27000] [28000] [29000] [30000] [31000] [32000] [33000] [34000] [35000] [36000] [37000] [38000] [39000] [40000] [41000] [42000] [43000] -fusion SPANNING read extraction for scaff: TLK2--FAM157A [1000] [2000] [3000] [4000] [5000] [6000] [7000] [8000] [9000] [10000] [11000] [12000] [13000] [14000] [15000] [16000] [17000] [18000] [19000] [20000] [21000] [22000] [23000] [24000] [25000] [26000] [27000] [28000] [29000] [30000] [31000] [32000] [33000] -fusion SPANNING read extraction for scaff: TVP23C--CDRT4 [1000] [2000] [3000] [4000] [5000] [6000] [7000] [8000] [9000] [10000] [11000] [12000] [13000] [14000] [15000] [16000] [17000] [18000] [19000] [20000] [21000] [22000] [23000] [24000] [25000] [26000] -fusion SPANNING read extraction for scaff: UBE2Q2P1--GOLGA6L10 [1000] [2000] [3000] [4000] [5000] [6000] [7000] [8000] [9000] [10000] [11000] [12000] [13000] [14000] [15000] [16000] [17000] [18000] [19000] [20000] [21000] [22000] [23000] [24000] [25000] [26000] [27000] [28000] [29000] [30000] [31000] [32000] [33000] [34000] [35000] [36000] [37000] [38000] [39000] [40000] [41000] [42000] [43000] [44000] [45000] [46000] [47000] [48000] [49000] [50000] [51000] [52000] [53000] [54000] [55000] [56000] [57000] [58000] [59000] [60000] [61000] [62000] [63000] [64000] [65000] [66000] [67000] [68000] [69000] [70000] [71000] [72000] -fusion SPANNING read extraction for scaff: VCL--USP54 [1000] [2000] [3000] [4000] [5000] [6000] [7000] [8000] [9000] [10000] [11000] [12000] [13000] [14000] [15000] [16000] [17000] [18000] [19000] [20000] [21000] [22000] [23000] [24000] [25000] [26000] [27000] [28000] [29000] [30000] [31000] [32000] [33000] [34000] [35000] [36000] [37000] [38000] [39000] [40000] [41000] [42000] [43000] [44000] [45000] [46000] [47000] [48000] [49000] [50000] [51000] [52000] [53000] [54000] [55000] [56000] [57000] [58000] [59000] [60000] [61000] [62000] [63000] [64000] [65000] [66000] [67000] [68000] [69000] [70000] [71000] [72000] [73000] [74000] [75000] [76000] [77000] [78000] [79000] [80000] [81000] [82000] [83000] [84000] [85000] [86000] [87000] [88000] [89000] [90000] [91000] [92000] [93000] [94000] [95000] [96000] [97000] [98000] [99000] [100000] [101000] [102000] [103000] [104000] [105000] [106000] [107000] [108000] [109000] [110000] [111000] [112000] [113000] [114000] [115000] [116000] [117000] [118000] [119000] [120000] [121000] [122000] [123000] [124000] [125000] [126000] [127000] [128000] [129000] [130000] [131000] [132000] [133000] [134000] [135000] [136000] [137000] [138000] [139000] [140000] [141000] [142000] [143000] [144000] [145000] [146000] [147000] [148000] [149000] [150000] [151000] [152000] [153000] [154000] [155000] [156000] [157000] [158000] [159000] [160000] [161000] [162000] [163000] [164000] [165000] [166000] [167000] [168000] [169000] [170000] [171000] [172000] -fusion SPANNING read extraction for scaff: XPO1--FAM161A -filtered reads reasons: $VAR1 = { 'seq similar region alignment' => 20215, 'lacks exon overlap' => 53470 }; EM: Starting log likelihood: -30080.700729 EM: Round [1] log likelihood: -30061.456320 EM: Round [2] log likelihood: -30061.382042 EM: Round [3] log likelihood: -30061.361503 EM: Round [4] log likelihood: -30061.341971 EM: Round [5] log likelihood: -30061.322725 EM: Round [6] log likelihood: -30061.303737 EM: Round [7] log likelihood: -30061.285001 EM: Round [8] log likelihood: -30061.266512 EM: Round [9] log likelihood: -30061.248265 EM: Round [10] log likelihood: -30061.230257 EM: Round [11] log likelihood: -30061.212483 EM: Round [12] log likelihood: -30061.194939 EM: Round [13] log likelihood: -30061.177621 EM: Round [14] log likelihood: -30061.160525 EM: Round [15] log likelihood: -30061.143647 EM: Round [16] log likelihood: -30061.126984 EM: Round [17] log likelihood: -30061.110532 EM: Round [18] log likelihood: -30061.094287 EM: Round [19] log likelihood: -30061.078246 EM: Round [20] log likelihood: -30061.062405 EM: Round [21] log likelihood: -30061.046762 EM: Round [22] log likelihood: -30061.031312 EM: Round [23] log likelihood: -30061.016053 EM: Round [24] log likelihood: -30061.000982 EM: Round [25] log likelihood: -30060.986096 EM: Round [26] log likelihood: -30060.971391 EM: Round [27] log likelihood: -30060.956864 EM: Round [28] log likelihood: -30060.942514 EM: Round [29] log likelihood: -30060.928337 EM: Round [30] log likelihood: -30060.914330 EM: Round [31] log likelihood: -30060.900491 EM: Round [32] log likelihood: -30060.886817 EM: Round [33] log likelihood: -30060.873305 EM: Round [34] log likelihood: -30060.859954 EM: Round [35] log likelihood: -30060.846760 EM: Round [36] log likelihood: -30060.833722 EM: Round [37] log likelihood: -30060.820836 EM: Round [38] log likelihood: -30060.808101 EM: Round [39] log likelihood: -30060.795515 EM: Round [40] log likelihood: -30060.783074 EM: Round [41] log likelihood: -30060.770778 EM: Round [42] log likelihood: -30060.758623 EM: Round [43] log likelihood: -30060.746609 EM: Round [44] log likelihood: -30060.734732 EM: Round [45] log likelihood: -30060.722990 EM: Round [46] log likelihood: -30060.711383 EM: Round [47] log likelihood: -30060.699907 EM: Round [48] log likelihood: -30060.688561 EM: Round [49] log likelihood: -30060.677344 EM: Round [50] log likelihood: -30060.666253 EM: Round [51] log likelihood: -30060.655286 EM: Round [52] log likelihood: -30060.644442 EM: Round [53] log likelihood: -30060.633719 EM: Round [54] log likelihood: -30060.623116 EM: Round [55] log likelihood: -30060.612630 EM: Round [56] log likelihood: -30060.602260 EM: Round [57] log likelihood: -30060.592005 EM: Round [58] log likelihood: -30060.581863 EM: Round [59] log likelihood: -30060.571832 EM: Round [60] log likelihood: -30060.561911 EM: Round [61] log likelihood: -30060.552099 EM: Round [62] log likelihood: -30060.542393 EM: Round [63] log likelihood: -30060.532793 EM: Round [64] log likelihood: -30060.523297 EM: Round [65] log likelihood: -30060.513904 EM: Round [66] log likelihood: -30060.504612 EM: Round [67] log likelihood: -30060.495421 EM: Round [68] log likelihood: -30060.486328 EM: Round [69] log likelihood: -30060.477332 EM: Round [70] log likelihood: -30060.468433 EM: Round [71] log likelihood: -30060.459628 EM: Round [72] log likelihood: -30060.450917 EM: Round [73] log likelihood: -30060.442299 EM: Round [74] log likelihood: -30060.433772 EM: Round [75] log likelihood: -30060.425335 EM: Round [76] log likelihood: -30060.416987 EM: Round [77] log likelihood: -30060.408726 EM: Round [78] log likelihood: -30060.400553 EM: Round [79] log likelihood: -30060.392465 EM: Round [80] log likelihood: -30060.384462 EM: Round [81] log likelihood: -30060.376542 EM: Round [82] log likelihood: -30060.368705 EM: Round [83] log likelihood: -30060.360949 EM: Round [84] log likelihood: -30060.353274 EM: Round [85] log likelihood: -30060.345678 EM: Round [86] log likelihood: -30060.338160 EM: Round [87] log likelihood: -30060.330720 EM: Round [88] log likelihood: -30060.323356 EM: Round [89] log likelihood: -30060.316069 EM: Round [90] log likelihood: -30060.308855 EM: Round [91] log likelihood: -30060.301716 EM: Round [92] log likelihood: -30060.294649 EM: Round [93] log likelihood: -30060.287655 EM: Round [94] log likelihood: -30060.280731 EM: Round [95] log likelihood: -30060.273878 EM: Round [96] log likelihood: -30060.267095 EM: Round [97] log likelihood: -30060.260380 EM: Round [98] log likelihood: -30060.253733 EM: Round [99] log likelihood: -30060.247152 EM: Round [100] log likelihood: -30060.240638 EM: Round [101] log likelihood: -30060.234190 EM: Round [102] log likelihood: -30060.227806 EM: Round [103] log likelihood: -30060.221486 EM: Round [104] log likelihood: -30060.215230 EM: Round [105] log likelihood: -30060.209035 EM: Round [106] log likelihood: -30060.202903 EM: Round [107] log likelihood: -30060.196831 EM: Round [108] log likelihood: -30060.190820 EM: Round [109] log likelihood: -30060.184868 EM: Round [110] log likelihood: -30060.178976 EM: Round [111] log likelihood: -30060.173141 EM: Round [112] log likelihood: -30060.167364 EM: Round [113] log likelihood: -30060.161644 EM: Round [114] log likelihood: -30060.155981 EM: Round [115] log likelihood: -30060.150373 EM: Round [116] log likelihood: -30060.144820 EM: Round [117] log likelihood: -30060.139321 EM: Round [118] log likelihood: -30060.133876 EM: Round [119] log likelihood: -30060.128485 EM: Round [120] log likelihood: -30060.123146 EM: Round [121] log likelihood: -30060.117859 EM: Round [122] log likelihood: -30060.112623 EM: Round [123] log likelihood: -30060.107438 EM: Round [124] log likelihood: -30060.102304 EM: Round [125] log likelihood: -30060.097219 EM: Round [126] log likelihood: -30060.092183 EM: Round [127] log likelihood: -30060.087196 EM: Round [128] log likelihood: -30060.082258 EM: Round [129] log likelihood: -30060.077366 EM: Round [130] log likelihood: -30060.072522 EM: Round [131] log likelihood: -30060.067725 EM: Round [132] log likelihood: -30060.062973 EM: Round [133] log likelihood: -30060.058267 EM: Round [134] log likelihood: -30060.053606 EM: Round [135] log likelihood: -30060.048989 EM: Round [136] log likelihood: -30060.044417 EM: Round [137] log likelihood: -30060.039888 EM: Round [138] log likelihood: -30060.035403 EM: Round [139] log likelihood: -30060.030960 EM: Round [140] log likelihood: -30060.026559 EM: Round [141] log likelihood: -30060.022200 EM: Round [142] log likelihood: -30060.017882 EM: Round [143] log likelihood: -30060.013606 EM: Round [144] log likelihood: -30060.009369 EM: Round [145] log likelihood: -30060.005173 EM: Round [146] log likelihood: -30060.001016 EM: Round [147] log likelihood: -30059.996899 EM: Round [148] log likelihood: -30059.992820 EM: Round [149] log likelihood: -30059.988780 EM: Round [150] log likelihood: -30059.984777 EM: Round [151] log likelihood: -30059.980812 EM: Round [152] log likelihood: -30059.976885 EM: Round [153] log likelihood: -30059.972994 EM: Round [154] log likelihood: -30059.969139 EM: Round [155] log likelihood: -30059.965321 EM: Round [156] log likelihood: -30059.961538 EM: Round [157] log likelihood: -30059.957790 EM: Round [158] log likelihood: -30059.954078 EM: Round [159] log likelihood: -30059.950399 EM: Round [160] log likelihood: -30059.946755 EM: Round [161] log likelihood: -30059.943145 EM: Round [162] log likelihood: -30059.939569 EM: Round [163] log likelihood: -30059.936025 EM: Round [164] log likelihood: -30059.932515 EM: Round [165] log likelihood: -30059.929037 EM: Round [166] log likelihood: -30059.925590 EM: Round [167] log likelihood: -30059.922176 EM: Round [168] log likelihood: -30059.918794 EM: Round [169] log likelihood: -30059.915442 EM: Round [170] log likelihood: -30059.912121 EM: Round [171] log likelihood: -30059.908831 EM: Round [172] log likelihood: -30059.905571 EM: Round [173] log likelihood: -30059.902341 EM: Round [174] log likelihood: -30059.899141 EM: Round [175] log likelihood: -30059.895970 EM: Round [176] log likelihood: -30059.892828 EM: Round [177] log likelihood: -30059.889715 EM: Round [178] log likelihood: -30059.886630 EM: Round [179] log likelihood: -30059.883574 EM: Round [180] log likelihood: -30059.880545 EM: Round [181] log likelihood: -30059.877544 EM: Round [182] log likelihood: -30059.874570 EM: Round [183] log likelihood: -30059.871624 EM: Round [184] log likelihood: -30059.868704 EM: Round [185] log likelihood: -30059.865810 EM: Round [186] log likelihood: -30059.862943 EM: Round [187] log likelihood: -30059.860102 EM: Round [188] log likelihood: -30059.857287 EM: Round [189] log likelihood: -30059.854497 EM: Round [190] log likelihood: -30059.851733 EM: Round [191] log likelihood: -30059.848993 EM: Round [192] log likelihood: -30059.846279 EM: Round [193] log likelihood: -30059.843588 EM: Round [194] log likelihood: -30059.840922 EM: Round [195] log likelihood: -30059.838280 EM: Round [196] log likelihood: -30059.835662 EM: Round [197] log likelihood: -30059.833068 EM: Round [198] log likelihood: -30059.830497 EM: Round [199] log likelihood: -30059.827949 EM: Round [200] log likelihood: -30059.825423 EM: Round [201] log likelihood: -30059.822921 EM: Round [202] log likelihood: -30059.820441 EM: Round [203] log likelihood: -30059.817983 EM: Round [204] log likelihood: -30059.815547 EM: Round [205] log likelihood: -30059.813133 EM: Round [206] log likelihood: -30059.810741 EM: Round [207] log likelihood: -30059.808370 EM: Round [208] log likelihood: -30059.806020 EM: Round [209] log likelihood: -30059.803691 EM: Round [210] log likelihood: -30059.801383 EM: Round [211] log likelihood: -30059.799095 EM: Round [212] log likelihood: -30059.796828 EM: Round [213] log likelihood: -30059.794581 EM: Round [214] log likelihood: -30059.792354 EM: Round [215] log likelihood: -30059.790147 EM: Round [216] log likelihood: -30059.787959 EM: Round [217] log likelihood: -30059.785791 EM: Round [218] log likelihood: -30059.783642 EM: Round [219] log likelihood: -30059.781513 EM: Round [220] log likelihood: -30059.779402 EM: Round [221] log likelihood: -30059.777309 EM: Round [222] log likelihood: -30059.775236 EM: Round [223] log likelihood: -30059.773180 EM: Round [224] log likelihood: -30059.771143 EM: Round [225] log likelihood: -30059.769124 EM: Round [226] log likelihood: -30059.767122 EM: Round [227] log likelihood: -30059.765139 EM: Round [228] log likelihood: -30059.763172 EM: Round [229] log likelihood: -30059.761224 EM: Round [230] log likelihood: -30059.759292 EM: Round [231] log likelihood: -30059.757377 EM: Round [232] log likelihood: -30059.755479 EM: Round [233] log likelihood: -30059.753598 EM: Round [234] log likelihood: -30059.751733 EM: Round [235] log likelihood: -30059.749885 EM: Round [236] log likelihood: -30059.748053 EM: Round [237] log likelihood: -30059.746237 EM: Round [238] log likelihood: -30059.744437 EM: Round [239] log likelihood: -30059.742653 EM: Round [240] log likelihood: -30059.740884 EM: Round [241] log likelihood: -30059.739131 EM: Round [242] log likelihood: -30059.737393 EM: Round [243] log likelihood: -30059.735671 EM: Round [244] log likelihood: -30059.733963 EM: Round [245] log likelihood: -30059.732271 EM: Round [246] log likelihood: -30059.730593 EM: Round [247] log likelihood: -30059.728929 EM: Round [248] log likelihood: -30059.727281 EM: Round [249] log likelihood: -30059.725646 EM: Round [250] log likelihood: -30059.724026 EM: Round [251] log likelihood: -30059.722420 EM: Round [252] log likelihood: -30059.720828 EM: Round [253] log likelihood: -30059.719250 EM: Round [254] log likelihood: -30059.717686 EM: Round [255] log likelihood: -30059.716135 EM: Round [256] log likelihood: -30059.714598 EM: Round [257] log likelihood: -30059.713074 EM: Round [258] log likelihood: -30059.711563 EM: Round [259] log likelihood: -30059.710065 EM: Round [260] log likelihood: -30059.708581 EM: Round [261] log likelihood: -30059.707109 EM: Round [262] log likelihood: -30059.705650 EM: Round [263] log likelihood: -30059.704204 EM: Round [264] log likelihood: -30059.702770 EM: Round [265] log likelihood: -30059.701348 EM: Round [266] log likelihood: -30059.699939 EM: Round [267] log likelihood: -30059.698542 EM: Round [268] log likelihood: -30059.697157 EM: Round [269] log likelihood: -30059.695784 EM: Round [270] log likelihood: -30059.694423 EM: Round [271] log likelihood: -30059.693074 EM: Round [272] log likelihood: -30059.691736 EM: Round [273] log likelihood: -30059.690410 EM: Round [274] log likelihood: -30059.689095 EM: Round [275] log likelihood: -30059.687792 EM: Round [276] log likelihood: -30059.686499 EM: Round [277] log likelihood: -30059.685218 EM: Round [278] log likelihood: -30059.683948 EM: Round [279] log likelihood: -30059.682689 EM: Round [280] log likelihood: -30059.681441 EM: Round [281] log likelihood: -30059.680203 EM: Round [282] log likelihood: -30059.678976 EM: Round [283] log likelihood: -30059.677760 EM: Round [284] log likelihood: -30059.676554 EM: Round [285] log likelihood: -30059.675358 EM: Round [286] log likelihood: -30059.674173 EM: Round [287] log likelihood: -30059.672997 EM: Round [288] log likelihood: -30059.671832 EM: Round [289] log likelihood: -30059.670677 EM: Round [290] log likelihood: -30059.669532 EM: Round [291] log likelihood: -30059.668396 EM: Round [292] log likelihood: -30059.667270 EM: Round [293] log likelihood: -30059.666154 EM: Round [294] log likelihood: -30059.665048 EM: Round [295] log likelihood: -30059.663950 EM: Round [296] log likelihood: -30059.662863 EM: Round [297] log likelihood: -30059.661784 EM: Round [298] log likelihood: -30059.660715 EM: Round [299] log likelihood: -30059.659655 EM: Round [300] log likelihood: -30059.658603 EM: Round [301] log likelihood: -30059.657561 EM: Round [302] log likelihood: -30059.656528 EM: Round [303] log likelihood: -30059.655503 EM: Round [304] log likelihood: -30059.654488 EM: Round [305] log likelihood: -30059.653481 EM: Round [306] log likelihood: -30059.652482 EM: Round [307] log likelihood: -30059.651492 EM: Round [308] log likelihood: -30059.650510 EM: Round [309] log likelihood: -30059.649537 EM: Round [310] log likelihood: -30059.648572 EM: Round [311] log likelihood: -30059.647615 EM: Round [312] log likelihood: -30059.646666 EM: Round [313] log likelihood: -30059.645726 EM: Round [314] log likelihood: -30059.644793 EM: Round [315] log likelihood: -30059.643868 EM: Round [316] log likelihood: -30059.642951 EM: Round [317] log likelihood: -30059.642042 EM: Round [318] log likelihood: -30059.641141 EM: Round [319] log likelihood: -30059.640247 EM: Round [320] log likelihood: -30059.639361 EM: Round [321] log likelihood: -30059.638482 EM: Round [322] log likelihood: -30059.637611 EM: Round [323] log likelihood: -30059.636747 EM: Round [324] log likelihood: -30059.635890 EM: Round [325] log likelihood: -30059.635041 EM: Round [326] log likelihood: -30059.634199 EM: Round [327] log likelihood: -30059.633364 EM: Round [328] log likelihood: -30059.632536 EM: Round [329] log likelihood: -30059.631715 EM: Round [330] log likelihood: -30059.630901 EM: Round [331] log likelihood: -30059.630093 EM: Round [332] log likelihood: -30059.629293 EM: Round [333] log likelihood: -30059.628499 EM: Round [334] log likelihood: -30059.627712 EM: Round [335] log likelihood: -30059.626932 EM: Round [336] log likelihood: -30059.626158 EM: Round [337] log likelihood: -30059.625391 EM: Round [338] log likelihood: -30059.624630 EM: Round [339] log likelihood: -30059.623876 EM: Round [340] log likelihood: -30059.623128 EM: Round [341] log likelihood: -30059.622386 EM: Round [342] log likelihood: -30059.621651 EM: Round [343] log likelihood: -30059.620921 EM: Round [344] log likelihood: -30059.620198 EM: Round [345] log likelihood: -30059.619481 EM: Round [346] log likelihood: -30059.618770 EM: Round [347] log likelihood: -30059.618065 EM: Round [348] log likelihood: -30059.617366 EM: Round [349] log likelihood: -30059.616672 EM: Round [350] log likelihood: -30059.615985 EM: Round [351] log likelihood: -30059.615303 EM: Round [352] log likelihood: -30059.614627 EM: Round [353] log likelihood: -30059.613957 EM: Round [354] log likelihood: -30059.613292 EM: Round [355] log likelihood: -30059.612633 EM: Round [356] log likelihood: -30059.611979 EM: Round [357] log likelihood: -30059.611331 EM: Round [358] log likelihood: -30059.610689 EM: Round [359] log likelihood: -30059.610051 EM: Round [360] log likelihood: -30059.609419 EM: Round [361] log likelihood: -30059.608792 EM: Round [362] log likelihood: -30059.608171 EM: Round [363] log likelihood: -30059.607555 EM: Round [364] log likelihood: -30059.606944 EM: Round [365] log likelihood: -30059.606338 EM: Round [366] log likelihood: -30059.605737 EM: Round [367] log likelihood: -30059.605141 EM: Round [368] log likelihood: -30059.604550 EM: Round [369] log likelihood: -30059.603964 EM: Round [370] log likelihood: -30059.603383 EM: Round [371] log likelihood: -30059.602806 EM: Round [372] log likelihood: -30059.602235 EM: Round [373] log likelihood: -30059.601668 EM: Round [374] log likelihood: -30059.601106 EM: Round [375] log likelihood: -30059.600549 EM: Round [376] log likelihood: -30059.599996 EM: Round [377] log likelihood: -30059.599448 EM: Round [378] log likelihood: -30059.598905 EM: Round [379] log likelihood: -30059.598366 EM: Round [380] log likelihood: -30059.597831 EM: Round [381] log likelihood: -30059.597301 EM: Round [382] log likelihood: -30059.596776 EM: Round [383] log likelihood: -30059.596254 EM: Round [384] log likelihood: -30059.595738 EM: Round [385] log likelihood: -30059.595225 EM: Round [386] log likelihood: -30059.594717 EM: Round [387] log likelihood: -30059.594213 EM: Round [388] log likelihood: -30059.593713 EM: Round [389] log likelihood: -30059.593217 EM: Round [390] log likelihood: -30059.592725 EM: Round [391] log likelihood: -30059.592238 EM: Round [392] log likelihood: -30059.591754 EM: Round [393] log likelihood: -30059.591275 EM: Round [394] log likelihood: -30059.590799 EM: Round [395] log likelihood: -30059.590328 EM: Round [396] log likelihood: -30059.589860 EM: Round [397] log likelihood: -30059.589396 EM: Round [398] log likelihood: -30059.588936 EM: Round [399] log likelihood: -30059.588480 EM: Round [400] log likelihood: -30059.588028 EM: Round [401] log likelihood: -30059.587579 EM: Round [402] log likelihood: -30059.587134 EM: Round [403] log likelihood: -30059.586693 EM: Round [404] log likelihood: -30059.586255 EM: Round [405] log likelihood: -30059.585822 EM: Round [406] log likelihood: -30059.585391 EM: Round [407] log likelihood: -30059.584964 EM: Round [408] log likelihood: -30059.584541 EM: Round [409] log likelihood: -30059.584121 EM: Round [410] log likelihood: -30059.583705 EM: Round [411] log likelihood: -30059.583292 EM: Round [412] log likelihood: -30059.582883 EM: Round [413] log likelihood: -30059.582477 EM: Round [414] log likelihood: -30059.582074 EM: Round [415] log likelihood: -30059.581675 EM: Round [416] log likelihood: -30059.581279 EM: Round [417] log likelihood: -30059.580886 EM: Round [418] log likelihood: -30059.580497 EM: Round [419] log likelihood: -30059.580110 EM: Round [420] log likelihood: -30059.579727 EM: Round [421] log likelihood: -30059.579347 EM: Round [422] log likelihood: -30059.578970 EM: Round [423] log likelihood: -30059.578597 EM: Round [424] log likelihood: -30059.578226 EM: Round [425] log likelihood: -30059.577858 EM: Round [426] log likelihood: -30059.577494 EM: Round [427] log likelihood: -30059.577132 EM: Round [428] log likelihood: -30059.576774 EM: Round [429] log likelihood: -30059.576418 EM: Round [430] log likelihood: -30059.576065 EM: Round [431] log likelihood: -30059.575715 EM: Round [432] log likelihood: -30059.575369 EM: Round [433] log likelihood: -30059.575024 EM: Round [434] log likelihood: -30059.574683 EM: Round [435] log likelihood: -30059.574345 EM: Round [436] log likelihood: -30059.574009 EM: Round [437] log likelihood: -30059.573676 EM: Round [438] log likelihood: -30059.573346 EM: Round [439] log likelihood: -30059.573019 EM: Round [440] log likelihood: -30059.572694 EM: Round [441] log likelihood: -30059.572372 EM: Round [442] log likelihood: -30059.572052 EM: Round [443] log likelihood: -30059.571736 EM: Round [444] log likelihood: -30059.571421 EM: Round [445] log likelihood: -30059.571110 EM: Round [446] log likelihood: -30059.570801 EM: Round [447] log likelihood: -30059.570494 EM: Round [448] log likelihood: -30059.570190 EM: Round [449] log likelihood: -30059.569889 EM: Round [450] log likelihood: -30059.569590 EM: Round [451] log likelihood: -30059.569293 EM: Round [452] log likelihood: -30059.568999 EM: Round [453] log likelihood: -30059.568707 EM: Round [454] log likelihood: -30059.568418 EM: Round [455] log likelihood: -30059.568131 EM: Round [456] log likelihood: -30059.567846 EM: Round [457] log likelihood: -30059.567564 EM: Round [458] log likelihood: -30059.567284 EM: Round [459] log likelihood: -30059.567006 EM: Round [460] log likelihood: -30059.566731 EM: Round [461] log likelihood: -30059.566458 EM: Round [462] log likelihood: -30059.566187 EM: Round [463] log likelihood: -30059.565918 EM: Round [464] log likelihood: -30059.565652 EM: Round [465] log likelihood: -30059.565387 EM: Round [466] log likelihood: -30059.565125 EM: Round [467] log likelihood: -30059.564865 EM: Round [468] log likelihood: -30059.564607 EM: Round [469] log likelihood: -30059.564351 EM: Round [470] log likelihood: -30059.564098 EM: Round [471] log likelihood: -30059.563846 EM: Round [472] log likelihood: -30059.563596 EM: Round [473] log likelihood: -30059.563349 EM: Round [474] log likelihood: -30059.563103 EM: Round [475] log likelihood: -30059.562860 EM: Round [476] log likelihood: -30059.562618 EM: Round [477] log likelihood: -30059.562379 EM: Round [478] log likelihood: -30059.562141 EM: Round [479] log likelihood: -30059.561906 EM: Round [480] log likelihood: -30059.561672 EM: Round [481] log likelihood: -30059.561440 EM: Round [482] log likelihood: -30059.561210 EM: Round [483] log likelihood: -30059.560982 EM: Round [484] log likelihood: -30059.560756 EM: Round [485] log likelihood: -30059.560532 EM: Round [486] log likelihood: -30059.560309 EM: Round [487] log likelihood: -30059.560088 EM: Round [488] log likelihood: -30059.559869 EM: Round [489] log likelihood: -30059.559652 EM: Round [490] log likelihood: -30059.559437 EM: Round [491] log likelihood: -30059.559223 EM: Round [492] log likelihood: -30059.559011 EM: Round [493] log likelihood: -30059.558801 EM: Round [494] log likelihood: -30059.558593 EM: Round [495] log likelihood: -30059.558386 EM: Round [496] log likelihood: -30059.558181 EM: Round [497] log likelihood: -30059.557978 EM: Round [498] log likelihood: -30059.557776 EM: Round [499] log likelihood: -30059.557576 EM: Round [500] log likelihood: -30059.557377 EM: Round [501] log likelihood: -30059.557181 EM: Round [502] log likelihood: -30059.556985 EM: Round [503] log likelihood: -30059.556792 EM: Round [504] log likelihood: -30059.556599 EM: Round [505] log likelihood: -30059.556409 EM: Round [506] log likelihood: -30059.556220 EM: Round [507] log likelihood: -30059.556033 EM: Round [508] log likelihood: -30059.555847 EM: Round [509] log likelihood: -30059.555662 EM: Round [510] log likelihood: -30059.555479 EM: Round [511] log likelihood: -30059.555298 EM: Round [512] log likelihood: -30059.555118 EM: Round [513] log likelihood: -30059.554939 EM: Round [514] log likelihood: -30059.554762 EM: Round [515] log likelihood: -30059.554587 EM: Round [516] log likelihood: -30059.554413 EM: Round [517] log likelihood: -30059.554240 EM: Round [518] log likelihood: -30059.554068 EM: Round [519] log likelihood: -30059.553898 EM: Round [520] log likelihood: -30059.553730 EM: Round [521] log likelihood: -30059.553563 EM: Round [522] log likelihood: -30059.553397 EM: Round [523] log likelihood: -30059.553232 EM: Round [524] log likelihood: -30059.553069 EM: Round [525] log likelihood: -30059.552907 EM: Round [526] log likelihood: -30059.552746 EM: Round [527] log likelihood: -30059.552587 EM: Round [528] log likelihood: -30059.552429 EM: Round [529] log likelihood: -30059.552272 EM: Round [530] log likelihood: -30059.552117 EM: Round [531] log likelihood: -30059.551963 EM: Round [532] log likelihood: -30059.551810 EM: Round [533] log likelihood: -30059.551658 EM: Round [534] log likelihood: -30059.551508 EM: Round [535] log likelihood: -30059.551358 EM: Round [536] log likelihood: -30059.551210 EM: Round [537] log likelihood: -30059.551064 EM: Round [538] log likelihood: -30059.550918 EM: Round [539] log likelihood: -30059.550773 EM: Round [540] log likelihood: -30059.550630 EM: Round [541] log likelihood: -30059.550488 EM: Round [542] log likelihood: -30059.550347 EM: Round [543] log likelihood: -30059.550207 EM: Round [544] log likelihood: -30059.550068 EM: Round [545] log likelihood: -30059.549931 EM: Round [546] log likelihood: -30059.549794 EM: Round [547] log likelihood: -30059.549659 EM: Round [548] log likelihood: -30059.549524 EM: Round [549] log likelihood: -30059.549391 EM: Round [550] log likelihood: -30059.549259 EM: Round [551] log likelihood: -30059.549128 EM: Round [552] log likelihood: -30059.548998 EM: Round [553] log likelihood: -30059.548869 EM: Round [554] log likelihood: -30059.548741 EM: Round [555] log likelihood: -30059.548614 EM: Round [556] log likelihood: -30059.548488 EM: Round [557] log likelihood: -30059.548363 EM: Round [558] log likelihood: -30059.548239 EM: Round [559] log likelihood: -30059.548117 EM: Round [560] log likelihood: -30059.547995 EM: Round [561] log likelihood: -30059.547874 EM: Round [562] log likelihood: -30059.547754 EM: Round [563] log likelihood: -30059.547635 EM: Round [564] log likelihood: -30059.547517 EM: Round [565] log likelihood: -30059.547400 EM: Round [566] log likelihood: -30059.547284 EM: Round [567] log likelihood: -30059.547169 EM: Round [568] log likelihood: -30059.547054 EM: Round [569] log likelihood: -30059.546941 EM: Round [570] log likelihood: -30059.546829 EM: Round [571] log likelihood: -30059.546717 EM: Round [572] log likelihood: -30059.546606 EM: Round [573] log likelihood: -30059.546497 EM: Round [574] log likelihood: -30059.546388 EM: Round [575] log likelihood: -30059.546280 EM: Round [576] log likelihood: -30059.546173 EM: Round [577] log likelihood: -30059.546067 EM: Round [578] log likelihood: -30059.545961 EM: Round [579] log likelihood: -30059.545857 EM: Round [580] log likelihood: -30059.545753 EM: Round [581] log likelihood: -30059.545650 EM: Round [582] log likelihood: -30059.545548 EM: Round [583] log likelihood: -30059.545447 EM: Round [584] log likelihood: -30059.545346 EM: Round [585] log likelihood: -30059.545247 EM: Stopping iterations at round 585 due to insufficient improvement in likelihood. [bam_sort_core] merging from 0 files and 8 in-memory blocks... -extracting read coordinates from /tmp/nxf.UqHZd5TehN/aih-tih-sc-6c4b48-R1_A23YTGFLT4_1.consolidated.bam into /tmp/nxf.UqHZd5TehN/aih-tih-sc-6c4b48-R1_A23YTGFLT4_1.consolidated.bam.read_coords CMD: touch /tmp/nxf.UqHZd5TehN/aih-tih-sc-6c4b48-R1_A23YTGFLT4_1.consolidated.bam.read_coords.ok CMD: /usr/bin/sort --parallel=1 -S10G -T . -k1,1 -k2,2 -k4,4n /tmp/nxf.UqHZd5TehN/aih-tih-sc-6c4b48-R1_A23YTGFLT4_1.consolidated.bam.read_coords > /tmp/nxf.UqHZd5TehN/aih-tih-sc-6c4b48-R1_A23YTGFLT4_1.consolidated.bam.read_coords.sort_by_readname CMD: /usr/bin/sort --parallel=1 -S10G -T . -k1,1 -k3,3n /tmp/nxf.UqHZd5TehN/aih-tih-sc-6c4b48-R1_A23YTGFLT4_1.consolidated.bam.frag_coords > /tmp/nxf.UqHZd5TehN/aih-tih-sc-6c4b48-R1_A23YTGFLT4_1.consolidated.bam.frag_coords.coord_sorted CMD: /usr/local/src/STAR-Fusion/FusionInspector/FusionFilter/util/blast_filter.pl --fusion_preds /tmp/nxf.UqHZd5TehN/fi_workdir/aih-tih-sc-6c4b48-R1_A23YTGFLT4_1.fusion_preds.coalesced.summary.EMadj.min_frag_thresh.wSpliceInfo --genome_lib_dir ctat_genome_lib_build_dir CMD: /usr/local/src/STAR-Fusion/FusionInspector/FusionFilter/util/promiscuity_filter.pl --fusion_preds /tmp/nxf.UqHZd5TehN/fi_workdir/aih-tih-sc-6c4b48-R1_A23YTGFLT4_1.fusion_preds.coalesced.summary.EMadj.min_frag_thresh.wSpliceInfo.post_blast_filter --genome_lib_dir ctat_genome_lib_build_dir --max_promiscuity 10 --min_pct_dom_promiscuity 50 CMD: cp /tmp/nxf.UqHZd5TehN/fi_workdir/aih-tih-sc-6c4b48-R1_A23YTGFLT4_1.fusion_preds.coalesced.summary.EMadj.min_frag_thresh.wSpliceInfo.post_blast_filter.post_promisc_filter /tmp/nxf.UqHZd5TehN/aih-tih-sc-6c4b48-R1_A23YTGFLT4_1.post_blast_and_promiscuity_filter -done, see /tmp/nxf.UqHZd5TehN/aih-tih-sc-6c4b48-R1_A23YTGFLT4_1.post_blast_and_promiscuity_filter.annot_filter.pass EM: Starting log likelihood: -29074.847240 EM: Round [1] log likelihood: -29060.809029 EM: Round [2] log likelihood: -29060.770785 EM: Round [3] log likelihood: -29060.770741 EM: Stopping iterations at round 3 due to insufficient improvement in likelihood. -total frags in /tmp/nxf.UqHZd5TehN/aih-tih-sc-6c4b48-R1_A23YTGFLT4_1_1.fastp.fastq.gz: 296687971 Warning - not locating file: /tmp/nxf.UqHZd5TehN/aih-tih-sc-6c4b48-R1_A23YTGFLT4_1.gmap_trinity_GG.fusions.gff3.bed WARNING, no entry stored in dbm for [ENSG00000172250.16] WARNING, no entry stored in dbm for [ENSG00000172250.16] WARNING, no entry stored in dbm for [ENSG00000172250.16] WARNING, no entry stored in dbm for [ENSG00000172250.16] WARNING, no entry stored in dbm for [ENSG00000267002.4] WARNING, no entry stored in dbm for [ENSG00000267002.4] WARNING, no entry stored in dbm for [ENSG00000189136.9] WARNING, no entry stored in dbm for [ENSG00000189136.9] WARNING, no entry stored in dbm for [ENSG00000218049.1] WARNING, no entry stored in dbm for [ENSG00000218049.1] WARNING, no entry stored in dbm for [ENSG00000218049.1] WARNING, no entry stored in dbm for [ENSG00000218049.1] WARNING, no entry stored in dbm for [ENSG00000236438.7] ls: cannot access 'IGV_inputs': No such file or directory