/usr/local/bin/picard: line 5: warning: setlocale: LC_ALL: cannot change locale (en_US.UTF-8): No such file or directory
INFO 2026-06-03 19:53:29 RExecutor Executing R script via command: Rscript /tmp/script6097150335957443571.R
ERROR 2026-06-03 19:53:29 ProcessExecutor /bin/sh: warning: setlocale: LC_ALL: cannot change locale (en_US.UTF-8)
ERROR 2026-06-03 19:53:29 ProcessExecutor sh: warning: setlocale: LC_ALL: cannot change locale (en_US.UTF-8)
ERROR 2026-06-03 19:53:29 ProcessExecutor sh: warning: setlocale: LC_ALL: cannot change locale (en_US.UTF-8)
ERROR 2026-06-03 19:53:29 ProcessExecutor During startup - Warning messages:
ERROR 2026-06-03 19:53:29 ProcessExecutor 1: Setting LC_CTYPE failed, using "C"
ERROR 2026-06-03 19:53:29 ProcessExecutor 2: Setting LC_COLLATE failed, using "C"
ERROR 2026-06-03 19:53:29 ProcessExecutor 3: Setting LC_TIME failed, using "C"
ERROR 2026-06-03 19:53:29 ProcessExecutor 4: Setting LC_MESSAGES failed, using "C"
ERROR 2026-06-03 19:53:29 ProcessExecutor 5: Setting LC_MONETARY failed, using "C"
ERROR 2026-06-03 19:53:29 ProcessExecutor 6: Setting LC_PAPER failed, using "C"
ERROR 2026-06-03 19:53:29 ProcessExecutor 7: Setting LC_MEASUREMENT failed, using "C"
INFO 2026-06-03 19:53:29 ProcessExecutor [1] "Checking if R is installed"
ERROR 2026-06-03 19:53:29 ProcessExecutor sh: warning: setlocale: LC_ALL: cannot change locale (en_US.UTF-8)
Jun 03, 2026 7:53:29 PM com.intel.gkl.NativeLibraryLoader load
INFO: Loading libgkl_compression.so from jar:file:/usr/local/share/picard-3.1.0-0/picard.jar!/com/intel/gkl/native/libgkl_compression.so
[Wed Jun 03 19:53:29 GMT 2026] CollectInsertSizeMetrics --Histogram_FILE aih-tih-sc-318819-R1_A23YTGFLT4_1_collectinsertsize.pdf --INPUT aih-tih-sc-318819-R1_A23YTGFLT4_1.Aligned.sortedByCoord.out.bam --OUTPUT aih-tih-sc-318819-R1_A23YTGFLT4_1_collectinsertsize.txt --DEVIATIONS 10.0 --MINIMUM_PCT 0.05 --METRIC_ACCUMULATION_LEVEL ALL_READS --INCLUDE_DUPLICATES false --ASSUME_SORTED true --STOP_AFTER 0 --VERBOSITY INFO --QUIET false --VALIDATION_STRINGENCY STRICT --COMPRESSION_LEVEL 5 --MAX_RECORDS_IN_RAM 500000 --CREATE_INDEX false --CREATE_MD5_FILE false --help false --version false --showHidden false --USE_JDK_DEFLATER false --USE_JDK_INFLATER false
[Wed Jun 03 19:53:29 GMT 2026] Executing as ?@nf-8ff60c8b573a1f8c858afc66c151bf84-eb874-6spj5 on Linux 6.12.88 amd64; OpenJDK 64-Bit Server VM 20-internal-adhoc..src; Deflater: Intel; Inflater: Intel; Provider GCS is available; Picard version: Version:3.1.0
INFO 2026-06-03 19:53:31 SinglePassSamProgram Processed 1,000,000 records. Elapsed time: 00:00:01s. Time for last 1,000,000: 1s. Last read position: chr1:1,355,615
INFO 2026-06-03 19:53:32 SinglePassSamProgram Processed 2,000,000 records. Elapsed time: 00:00:02s. Time for last 1,000,000: 1s. Last read position: chr1:2,499,198
INFO 2026-06-03 19:53:33 SinglePassSamProgram Processed 3,000,000 records. Elapsed time: 00:00:03s. Time for last 1,000,000: 1s. Last read position: chr1:6,785,513
INFO 2026-06-03 19:53:35 SinglePassSamProgram Processed 4,000,000 records. Elapsed time: 00:00:05s. Time for last 1,000,000: 1s. Last read position: chr1:10,463,099
INFO 2026-06-03 19:53:36 SinglePassSamProgram Processed 5,000,000 records. Elapsed time: 00:00:06s. Time for last 1,000,000: 1s. Last read position: chr1:13,780,555
INFO 2026-06-03 19:53:37 SinglePassSamProgram Processed 6,000,000 records. Elapsed time: 00:00:07s. Time for last 1,000,000: 1s. Last read position: chr1:16,956,073
INFO 2026-06-03 19:53:38 SinglePassSamProgram Processed 7,000,000 records. Elapsed time: 00:00:08s. Time for last 1,000,000: 1s. Last read position: chr1:19,385,507
INFO 2026-06-03 19:53:39 SinglePassSamProgram Processed 8,000,000 records. Elapsed time: 00:00:10s. Time for last 1,000,000: 1s. Last read position: chr1:21,617,425
INFO 2026-06-03 19:53:41 SinglePassSamProgram Processed 9,000,000 records. Elapsed time: 00:00:11s. Time for last 1,000,000: 1s. Last read position: chr1:21,890,628
INFO 2026-06-03 19:53:42 SinglePassSamProgram Processed 10,000,000 records. Elapsed time: 00:00:12s. Time for last 1,000,000: 1s. Last read position: chr1:23,695,838
INFO 2026-06-03 19:53:43 SinglePassSamProgram Processed 11,000,000 records. Elapsed time: 00:00:13s. Time for last 1,000,000: 1s. Last read position: chr1:26,472,582
INFO 2026-06-03 19:53:44 SinglePassSamProgram Processed 12,000,000 records. Elapsed time: 00:00:14s. Time for last 1,000,000: 1s. Last read position: chr1:27,801,719
INFO 2026-06-03 19:53:46 SinglePassSamProgram Processed 13,000,000 records. Elapsed time: 00:00:16s. Time for last 1,000,000: 1s. Last read position: chr1:31,586,885
INFO 2026-06-03 19:53:47 SinglePassSamProgram Processed 14,000,000 records. Elapsed time: 00:00:17s. Time for last 1,000,000: 1s. Last read position: chr1:32,797,810
INFO 2026-06-03 19:53:48 SinglePassSamProgram Processed 15,000,000 records. Elapsed time: 00:00:18s. Time for last 1,000,000: 1s. Last read position: chr1:36,178,012
INFO 2026-06-03 19:53:49 SinglePassSamProgram Processed 16,000,000 records. Elapsed time: 00:00:19s. Time for last 1,000,000: 1s. Last read position: chr1:39,340,638
INFO 2026-06-03 19:53:50 SinglePassSamProgram Processed 17,000,000 records. Elapsed time: 00:00:20s. Time for last 1,000,000: 1s. Last read position: chr1:42,682,696
INFO 2026-06-03 19:53:52 SinglePassSamProgram Processed 18,000,000 records. Elapsed time: 00:00:22s. Time for last 1,000,000: 1s. Last read position: chr1:44,008,408
INFO 2026-06-03 19:53:53 SinglePassSamProgram Processed 19,000,000 records. Elapsed time: 00:00:23s. Time for last 1,000,000: 1s. Last read position: chr1:46,197,755
INFO 2026-06-03 19:53:54 SinglePassSamProgram Processed 20,000,000 records. Elapsed time: 00:00:24s. Time for last 1,000,000: 1s. Last read position: chr1:54,032,191
INFO 2026-06-03 19:53:55 SinglePassSamProgram Processed 21,000,000 records. Elapsed time: 00:00:26s. Time for last 1,000,000: 1s. Last read position: chr1:64,470,928
INFO 2026-06-03 19:53:57 SinglePassSamProgram Processed 22,000,000 records. Elapsed time: 00:00:27s. Time for last 1,000,000: 1s. Last read position: chr1:85,582,526
INFO 2026-06-03 19:53:58 SinglePassSamProgram Processed 23,000,000 records. Elapsed time: 00:00:28s. Time for last 1,000,000: 1s. Last read position: chr1:94,828,502
INFO 2026-06-03 19:53:59 SinglePassSamProgram Processed 24,000,000 records. Elapsed time: 00:00:29s. Time for last 1,000,000: 1s. Last read position: chr1:109,630,334
INFO 2026-06-03 19:54:00 SinglePassSamProgram Processed 25,000,000 records. Elapsed time: 00:00:31s. Time for last 1,000,000: 1s. Last read position: chr1:113,642,422
INFO 2026-06-03 19:54:02 SinglePassSamProgram Processed 26,000,000 records. Elapsed time: 00:00:32s. Time for last 1,000,000: 1s. Last read position: chr1:117,076,280
INFO 2026-06-03 19:54:03 SinglePassSamProgram Processed 27,000,000 records. Elapsed time: 00:00:33s. Time for last 1,000,000: 1s. Last read position: chr1:120,805,719
INFO 2026-06-03 19:54:04 SinglePassSamProgram Processed 28,000,000 records. Elapsed time: 00:00:34s. Time for last 1,000,000: 1s. Last read position: chr1:146,156,786
INFO 2026-06-03 19:54:05 SinglePassSamProgram Processed 29,000,000 records. Elapsed time: 00:00:35s. Time for last 1,000,000: 1s. Last read position: chr1:149,071,667
INFO 2026-06-03 19:54:06 SinglePassSamProgram Processed 30,000,000 records. Elapsed time: 00:00:36s. Time for last 1,000,000: 1s. Last read position: chr1:149,929,151
INFO 2026-06-03 19:54:08 SinglePassSamProgram Processed 31,000,000 records. Elapsed time: 00:00:38s. Time for last 1,000,000: 1s. Last read position: chr1:150,999,869
INFO 2026-06-03 19:54:09 SinglePassSamProgram Processed 32,000,000 records. Elapsed time: 00:00:39s. Time for last 1,000,000: 1s. Last read position: chr1:153,740,696
INFO 2026-06-03 19:54:10 SinglePassSamProgram Processed 33,000,000 records. Elapsed time: 00:00:40s. Time for last 1,000,000: 1s. Last read position: chr1:154,207,638
INFO 2026-06-03 19:54:11 SinglePassSamProgram Processed 34,000,000 records. Elapsed time: 00:00:41s. Time for last 1,000,000: 1s. Last read position: chr1:155,172,774
INFO 2026-06-03 19:54:12 SinglePassSamProgram Processed 35,000,000 records. Elapsed time: 00:00:42s. Time for last 1,000,000: 1s. Last read position: chr1:155,826,904
INFO 2026-06-03 19:54:14 SinglePassSamProgram Processed 36,000,000 records. Elapsed time: 00:00:44s. Time for last 1,000,000: 1s. Last read position: chr1:156,293,414
INFO 2026-06-03 19:54:15 SinglePassSamProgram Processed 37,000,000 records. Elapsed time: 00:00:45s. Time for last 1,000,000: 1s. Last read position: chr1:160,292,038
INFO 2026-06-03 19:54:16 SinglePassSamProgram Processed 38,000,000 records. Elapsed time: 00:00:46s. Time for last 1,000,000: 1s. Last read position: chr1:161,607,261
INFO 2026-06-03 19:54:17 SinglePassSamProgram Processed 39,000,000 records. Elapsed time: 00:00:47s. Time for last 1,000,000: 1s. Last read position: chr1:169,127,259
INFO 2026-06-03 19:54:18 SinglePassSamProgram Processed 40,000,000 records. Elapsed time: 00:00:49s. Time for last 1,000,000: 1s. Last read position: chr1:174,305,030
INFO 2026-06-03 19:54:20 SinglePassSamProgram Processed 41,000,000 records. Elapsed time: 00:00:50s. Time for last 1,000,000: 1s. Last read position: chr1:182,884,654
INFO 2026-06-03 19:54:21 SinglePassSamProgram Processed 42,000,000 records. Elapsed time: 00:00:51s. Time for last 1,000,000: 1s. Last read position: chr1:186,351,355
INFO 2026-06-03 19:54:22 SinglePassSamProgram Processed 43,000,000 records. Elapsed time: 00:00:52s. Time for last 1,000,000: 1s. Last read position: chr1:201,712,908
INFO 2026-06-03 19:54:23 SinglePassSamProgram Processed 44,000,000 records. Elapsed time: 00:00:53s. Time for last 1,000,000: 1s. Last read position: chr1:204,124,804
INFO 2026-06-03 19:54:25 SinglePassSamProgram Processed 45,000,000 records. Elapsed time: 00:00:55s. Time for last 1,000,000: 1s. Last read position: chr1:206,934,451
INFO 2026-06-03 19:54:26 SinglePassSamProgram Processed 46,000,000 records. Elapsed time: 00:00:56s. Time for last 1,000,000: 1s. Last read position: chr1:209,625,857
INFO 2026-06-03 19:54:27 SinglePassSamProgram Processed 47,000,000 records. Elapsed time: 00:00:57s. Time for last 1,000,000: 1s. Last read position: chr1:222,633,178
INFO 2026-06-03 19:54:28 SinglePassSamProgram Processed 48,000,000 records. Elapsed time: 00:00:58s. Time for last 1,000,000: 1s. Last read position: chr1:226,186,600
INFO 2026-06-03 19:54:29 SinglePassSamProgram Processed 49,000,000 records. Elapsed time: 00:00:59s. Time for last 1,000,000: 1s. Last read position: chr1:232,514,572
INFO 2026-06-03 19:54:31 SinglePassSamProgram Processed 50,000,000 records. Elapsed time: 00:01:01s. Time for last 1,000,000: 1s. Last read position: chr1:244,054,690
INFO 2026-06-03 19:54:32 SinglePassSamProgram Processed 51,000,000 records. Elapsed time: 00:01:02s. Time for last 1,000,000: 1s. Last read position: chr2:3,388,573
INFO 2026-06-03 19:54:33 SinglePassSamProgram Processed 52,000,000 records. Elapsed time: 00:01:03s. Time for last 1,000,000: 1s. Last read position: chr2:15,595,509
INFO 2026-06-03 19:54:34 SinglePassSamProgram Processed 53,000,000 records. Elapsed time: 00:01:04s. Time for last 1,000,000: 1s. Last read position: chr2:26,135,029
INFO 2026-06-03 19:54:35 SinglePassSamProgram Processed 54,000,000 records. Elapsed time: 00:01:06s. Time for last 1,000,000: 1s. Last read position: chr2:28,591,710
INFO 2026-06-03 19:54:37 SinglePassSamProgram Processed 55,000,000 records. Elapsed time: 00:01:07s. Time for last 1,000,000: 1s. Last read position: chr2:32,916,262
INFO 2026-06-03 19:54:38 SinglePassSamProgram Processed 56,000,000 records. Elapsed time: 00:01:08s. Time for last 1,000,000: 1s. Last read position: chr2:32,916,406
INFO 2026-06-03 19:54:39 SinglePassSamProgram Processed 57,000,000 records. Elapsed time: 00:01:09s. Time for last 1,000,000: 1s. Last read position: chr2:36,966,269
INFO 2026-06-03 19:54:40 SinglePassSamProgram Processed 58,000,000 records. Elapsed time: 00:01:10s. Time for last 1,000,000: 1s. Last read position: chr2:43,572,809
INFO 2026-06-03 19:54:42 SinglePassSamProgram Processed 59,000,000 records. Elapsed time: 00:01:12s. Time for last 1,000,000: 1s. Last read position: chr2:53,919,147
INFO 2026-06-03 19:54:43 SinglePassSamProgram Processed 60,000,000 records. Elapsed time: 00:01:13s. Time for last 1,000,000: 1s. Last read position: chr2:61,071,697
INFO 2026-06-03 19:54:44 SinglePassSamProgram Processed 61,000,000 records. Elapsed time: 00:01:14s. Time for last 1,000,000: 1s. Last read position: chr2:69,329,375
INFO 2026-06-03 19:54:45 SinglePassSamProgram Processed 62,000,000 records. Elapsed time: 00:01:15s. Time for last 1,000,000: 1s. Last read position: chr2:73,448,245
INFO 2026-06-03 19:54:47 SinglePassSamProgram Processed 63,000,000 records. Elapsed time: 00:01:17s. Time for last 1,000,000: 1s. Last read position: chr2:75,654,746
INFO 2026-06-03 19:54:48 SinglePassSamProgram Processed 64,000,000 records. Elapsed time: 00:01:18s. Time for last 1,000,000: 1s. Last read position: chr2:79,122,107
INFO 2026-06-03 19:54:49 SinglePassSamProgram Processed 65,000,000 records. Elapsed time: 00:01:19s. Time for last 1,000,000: 1s. Last read position: chr2:86,146,106
INFO 2026-06-03 19:54:50 SinglePassSamProgram Processed 66,000,000 records. Elapsed time: 00:01:20s. Time for last 1,000,000: 1s. Last read position: chr2:95,917,877
INFO 2026-06-03 19:54:52 SinglePassSamProgram Processed 67,000,000 records. Elapsed time: 00:01:22s. Time for last 1,000,000: 1s. Last read position: chr2:99,322,092
INFO 2026-06-03 19:54:53 SinglePassSamProgram Processed 68,000,000 records. Elapsed time: 00:01:23s. Time for last 1,000,000: 1s. Last read position: chr2:106,441,293
INFO 2026-06-03 19:54:54 SinglePassSamProgram Processed 69,000,000 records. Elapsed time: 00:01:24s. Time for last 1,000,000: 1s. Last read position: chr2:108,763,986
INFO 2026-06-03 19:54:55 SinglePassSamProgram Processed 70,000,000 records. Elapsed time: 00:01:25s. Time for last 1,000,000: 1s. Last read position: chr2:108,781,325
INFO 2026-06-03 19:54:56 SinglePassSamProgram Processed 71,000,000 records. Elapsed time: 00:01:27s. Time for last 1,000,000: 1s. Last read position: chr2:110,535,382
INFO 2026-06-03 19:54:58 SinglePassSamProgram Processed 72,000,000 records. Elapsed time: 00:01:28s. Time for last 1,000,000: 1s. Last read position: chr2:113,132,919
INFO 2026-06-03 19:54:59 SinglePassSamProgram Processed 73,000,000 records. Elapsed time: 00:01:29s. Time for last 1,000,000: 1s. Last read position: chr2:127,625,385
INFO 2026-06-03 19:55:00 SinglePassSamProgram Processed 74,000,000 records. Elapsed time: 00:01:30s. Time for last 1,000,000: 1s. Last read position: chr2:136,199,073
INFO 2026-06-03 19:55:02 SinglePassSamProgram Processed 75,000,000 records. Elapsed time: 00:01:32s. Time for last 1,000,000: 1s. Last read position: chr2:159,748,419
INFO 2026-06-03 19:55:03 SinglePassSamProgram Processed 76,000,000 records. Elapsed time: 00:01:33s. Time for last 1,000,000: 1s. Last read position: chr2:173,363,238
INFO 2026-06-03 19:55:04 SinglePassSamProgram Processed 77,000,000 records. Elapsed time: 00:01:34s. Time for last 1,000,000: 1s. Last read position: chr2:181,915,648
INFO 2026-06-03 19:55:05 SinglePassSamProgram Processed 78,000,000 records. Elapsed time: 00:01:35s. Time for last 1,000,000: 1s. Last read position: chr2:188,997,723
INFO 2026-06-03 19:55:07 SinglePassSamProgram Processed 79,000,000 records. Elapsed time: 00:01:37s. Time for last 1,000,000: 1s. Last read position: chr2:189,085,171
INFO 2026-06-03 19:55:08 SinglePassSamProgram Processed 80,000,000 records. Elapsed time: 00:01:38s. Time for last 1,000,000: 1s. Last read position: chr2:197,501,102
INFO 2026-06-03 19:55:09 SinglePassSamProgram Processed 81,000,000 records. Elapsed time: 00:01:39s. Time for last 1,000,000: 1s. Last read position: chr2:206,056,838
INFO 2026-06-03 19:55:10 SinglePassSamProgram Processed 82,000,000 records. Elapsed time: 00:01:40s. Time for last 1,000,000: 1s. Last read position: chr2:215,367,924
INFO 2026-06-03 19:55:12 SinglePassSamProgram Processed 83,000,000 records. Elapsed time: 00:01:42s. Time for last 1,000,000: 1s. Last read position: chr2:215,376,498
INFO 2026-06-03 19:55:13 SinglePassSamProgram Processed 84,000,000 records. Elapsed time: 00:01:43s. Time for last 1,000,000: 1s. Last read position: chr2:215,388,242
INFO 2026-06-03 19:55:14 SinglePassSamProgram Processed 85,000,000 records. Elapsed time: 00:01:44s. Time for last 1,000,000: 1s. Last read position: chr2:215,408,160
INFO 2026-06-03 19:55:15 SinglePassSamProgram Processed 86,000,000 records. Elapsed time: 00:01:45s. Time for last 1,000,000: 1s. Last read position: chr2:215,428,184
INFO 2026-06-03 19:55:17 SinglePassSamProgram Processed 87,000,000 records. Elapsed time: 00:01:47s. Time for last 1,000,000: 1s. Last read position: chr2:217,892,951
INFO 2026-06-03 19:55:18 SinglePassSamProgram Processed 88,000,000 records. Elapsed time: 00:01:48s. Time for last 1,000,000: 1s. Last read position: chr2:219,250,896
INFO 2026-06-03 19:55:19 SinglePassSamProgram Processed 89,000,000 records. Elapsed time: 00:01:49s. Time for last 1,000,000: 1s. Last read position: chr2:230,328,776
INFO 2026-06-03 19:55:20 SinglePassSamProgram Processed 90,000,000 records. Elapsed time: 00:01:50s. Time for last 1,000,000: 1s. Last read position: chr2:233,251,835
INFO 2026-06-03 19:55:22 SinglePassSamProgram Processed 91,000,000 records. Elapsed time: 00:01:52s. Time for last 1,000,000: 1s. Last read position: chr2:237,371,997
INFO 2026-06-03 19:55:23 SinglePassSamProgram Processed 92,000,000 records. Elapsed time: 00:01:53s. Time for last 1,000,000: 1s. Last read position: chr2:240,617,206
INFO 2026-06-03 19:55:24 SinglePassSamProgram Processed 93,000,000 records. Elapsed time: 00:01:54s. Time for last 1,000,000: 1s. Last read position: chr3:5,199,666
INFO 2026-06-03 19:55:25 SinglePassSamProgram Processed 94,000,000 records. Elapsed time: 00:01:55s. Time for last 1,000,000: 1s. Last read position: chr3:12,599,717
INFO 2026-06-03 19:55:27 SinglePassSamProgram Processed 95,000,000 records. Elapsed time: 00:01:57s. Time for last 1,000,000: 1s. Last read position: chr3:22,382,015
INFO 2026-06-03 19:55:28 SinglePassSamProgram Processed 96,000,000 records. Elapsed time: 00:01:58s. Time for last 1,000,000: 1s. Last read position: chr3:37,326,666
INFO 2026-06-03 19:55:29 SinglePassSamProgram Processed 97,000,000 records. Elapsed time: 00:01:59s. Time for last 1,000,000: 1s. Last read position: chr3:42,087,250
INFO 2026-06-03 19:55:30 SinglePassSamProgram Processed 98,000,000 records. Elapsed time: 00:02:00s. Time for last 1,000,000: 1s. Last read position: chr3:47,000,187
INFO 2026-06-03 19:55:32 SinglePassSamProgram Processed 99,000,000 records. Elapsed time: 00:02:02s. Time for last 1,000,000: 1s. Last read position: chr3:48,419,757
INFO 2026-06-03 19:55:33 SinglePassSamProgram Processed 100,000,000 records. Elapsed time: 00:02:03s. Time for last 1,000,000: 1s. Last read position: chr3:48,592,618
INFO 2026-06-03 19:55:34 SinglePassSamProgram Processed 101,000,000 records. Elapsed time: 00:02:04s. Time for last 1,000,000: 1s. Last read position: chr3:49,123,766
INFO 2026-06-03 19:55:35 SinglePassSamProgram Processed 102,000,000 records. Elapsed time: 00:02:06s. Time for last 1,000,000: 1s. Last read position: chr3:50,108,128
INFO 2026-06-03 19:55:37 SinglePassSamProgram Processed 103,000,000 records. Elapsed time: 00:02:07s. Time for last 1,000,000: 1s. Last read position: chr3:52,332,269
INFO 2026-06-03 19:55:38 SinglePassSamProgram Processed 104,000,000 records. Elapsed time: 00:02:08s. Time for last 1,000,000: 1s. Last read position: chr3:53,231,463
INFO 2026-06-03 19:55:39 SinglePassSamProgram Processed 105,000,000 records. Elapsed time: 00:02:09s. Time for last 1,000,000: 1s. Last read position: chr3:58,534,079
INFO 2026-06-03 19:55:40 SinglePassSamProgram Processed 106,000,000 records. Elapsed time: 00:02:10s. Time for last 1,000,000: 1s. Last read position: chr3:88,139,377
INFO 2026-06-03 19:55:42 SinglePassSamProgram Processed 107,000,000 records. Elapsed time: 00:02:12s. Time for last 1,000,000: 1s. Last read position: chr3:112,119,478
INFO 2026-06-03 19:55:43 SinglePassSamProgram Processed 108,000,000 records. Elapsed time: 00:02:13s. Time for last 1,000,000: 1s. Last read position: chr3:122,570,545
INFO 2026-06-03 19:55:44 SinglePassSamProgram Processed 109,000,000 records. Elapsed time: 00:02:14s. Time for last 1,000,000: 1s. Last read position: chr3:126,991,419
INFO 2026-06-03 19:55:45 SinglePassSamProgram Processed 110,000,000 records. Elapsed time: 00:02:15s. Time for last 1,000,000: 1s. Last read position: chr3:129,559,719
INFO 2026-06-03 19:55:47 SinglePassSamProgram Processed 111,000,000 records. Elapsed time: 00:02:17s. Time for last 1,000,000: 1s. Last read position: chr3:138,759,184
INFO 2026-06-03 19:55:48 SinglePassSamProgram Processed 112,000,000 records. Elapsed time: 00:02:18s. Time for last 1,000,000: 1s. Last read position: chr3:153,171,058
INFO 2026-06-03 19:55:49 SinglePassSamProgram Processed 113,000,000 records. Elapsed time: 00:02:19s. Time for last 1,000,000: 1s. Last read position: chr3:172,295,411
INFO 2026-06-03 19:55:50 SinglePassSamProgram Processed 114,000,000 records. Elapsed time: 00:02:20s. Time for last 1,000,000: 1s. Last read position: chr3:184,316,129
INFO 2026-06-03 19:55:52 SinglePassSamProgram Processed 115,000,000 records. Elapsed time: 00:02:22s. Time for last 1,000,000: 1s. Last read position: chr3:187,728,478
INFO 2026-06-03 19:55:53 SinglePassSamProgram Processed 116,000,000 records. Elapsed time: 00:02:23s. Time for last 1,000,000: 1s. Last read position: chr3:194,642,060
INFO 2026-06-03 19:55:54 SinglePassSamProgram Processed 117,000,000 records. Elapsed time: 00:02:24s. Time for last 1,000,000: 1s. Last read position: chr3:195,780,177
INFO 2026-06-03 19:55:56 SinglePassSamProgram Processed 118,000,000 records. Elapsed time: 00:02:26s. Time for last 1,000,000: 1s. Last read position: chr3:195,785,055
INFO 2026-06-03 19:55:57 SinglePassSamProgram Processed 119,000,000 records. Elapsed time: 00:02:27s. Time for last 1,000,000: 1s. Last read position: chr3:196,937,559
INFO 2026-06-03 19:55:58 SinglePassSamProgram Processed 120,000,000 records. Elapsed time: 00:02:28s. Time for last 1,000,000: 1s. Last read position: chr4:1,212,237
INFO 2026-06-03 19:55:59 SinglePassSamProgram Processed 121,000,000 records. Elapsed time: 00:02:29s. Time for last 1,000,000: 1s. Last read position: chr4:2,827,271
INFO 2026-06-03 19:56:00 SinglePassSamProgram Processed 122,000,000 records. Elapsed time: 00:02:30s. Time for last 1,000,000: 1s. Last read position: chr4:7,809,763
INFO 2026-06-03 19:56:02 SinglePassSamProgram Processed 123,000,000 records. Elapsed time: 00:02:32s. Time for last 1,000,000: 1s. Last read position: chr4:24,537,154
INFO 2026-06-03 19:56:03 SinglePassSamProgram Processed 124,000,000 records. Elapsed time: 00:02:33s. Time for last 1,000,000: 1s. Last read position: chr4:41,013,767
INFO 2026-06-03 19:56:04 SinglePassSamProgram Processed 125,000,000 records. Elapsed time: 00:02:34s. Time for last 1,000,000: 1s. Last read position: chr4:56,342,842
INFO 2026-06-03 19:56:05 SinglePassSamProgram Processed 126,000,000 records. Elapsed time: 00:02:35s. Time for last 1,000,000: 1s. Last read position: chr4:73,741,950
INFO 2026-06-03 19:56:07 SinglePassSamProgram Processed 127,000,000 records. Elapsed time: 00:02:37s. Time for last 1,000,000: 1s. Last read position: chr4:77,164,311
INFO 2026-06-03 19:56:08 SinglePassSamProgram Processed 128,000,000 records. Elapsed time: 00:02:38s. Time for last 1,000,000: 1s. Last read position: chr4:87,494,158
INFO 2026-06-03 19:56:09 SinglePassSamProgram Processed 129,000,000 records. Elapsed time: 00:02:39s. Time for last 1,000,000: 1s. Last read position: chr4:105,424,294
INFO 2026-06-03 19:56:10 SinglePassSamProgram Processed 130,000,000 records. Elapsed time: 00:02:40s. Time for last 1,000,000: 1s. Last read position: chr4:122,279,965
INFO 2026-06-03 19:56:11 SinglePassSamProgram Processed 131,000,000 records. Elapsed time: 00:02:41s. Time for last 1,000,000: 1s. Last read position: chr4:145,892,323
INFO 2026-06-03 19:56:13 SinglePassSamProgram Processed 132,000,000 records. Elapsed time: 00:02:43s. Time for last 1,000,000: 1s. Last read position: chr4:158,869,127
INFO 2026-06-03 19:56:14 SinglePassSamProgram Processed 133,000,000 records. Elapsed time: 00:02:44s. Time for last 1,000,000: 1s. Last read position: chr4:185,332,616
INFO 2026-06-03 19:56:15 SinglePassSamProgram Processed 134,000,000 records. Elapsed time: 00:02:45s. Time for last 1,000,000: 1s. Last read position: chr5:1,341,773
INFO 2026-06-03 19:56:16 SinglePassSamProgram Processed 135,000,000 records. Elapsed time: 00:02:46s. Time for last 1,000,000: 1s. Last read position: chr5:14,397,088
INFO 2026-06-03 19:56:17 SinglePassSamProgram Processed 136,000,000 records. Elapsed time: 00:02:48s. Time for last 1,000,000: 1s. Last read position: chr5:33,467,584
INFO 2026-06-03 19:56:19 SinglePassSamProgram Processed 137,000,000 records. Elapsed time: 00:02:49s. Time for last 1,000,000: 1s. Last read position: chr5:44,811,018
INFO 2026-06-03 19:56:20 SinglePassSamProgram Processed 138,000,000 records. Elapsed time: 00:02:50s. Time for last 1,000,000: 1s. Last read position: chr5:68,296,193
INFO 2026-06-03 19:56:21 SinglePassSamProgram Processed 139,000,000 records. Elapsed time: 00:02:51s. Time for last 1,000,000: 1s. Last read position: chr5:74,720,706
INFO 2026-06-03 19:56:22 SinglePassSamProgram Processed 140,000,000 records. Elapsed time: 00:02:52s. Time for last 1,000,000: 1s. Last read position: chr5:85,549,657
INFO 2026-06-03 19:56:24 SinglePassSamProgram Processed 141,000,000 records. Elapsed time: 00:02:54s. Time for last 1,000,000: 1s. Last read position: chr5:103,168,178
INFO 2026-06-03 19:56:25 SinglePassSamProgram Processed 142,000,000 records. Elapsed time: 00:02:55s. Time for last 1,000,000: 1s. Last read position: chr5:127,539,074
INFO 2026-06-03 19:56:26 SinglePassSamProgram Processed 143,000,000 records. Elapsed time: 00:02:56s. Time for last 1,000,000: 1s. Last read position: chr5:134,666,854
INFO 2026-06-03 19:56:27 SinglePassSamProgram Processed 144,000,000 records. Elapsed time: 00:02:57s. Time for last 1,000,000: 1s. Last read position: chr5:138,473,793
INFO 2026-06-03 19:56:29 SinglePassSamProgram Processed 145,000,000 records. Elapsed time: 00:02:59s. Time for last 1,000,000: 1s. Last read position: chr5:140,674,736
INFO 2026-06-03 19:56:30 SinglePassSamProgram Processed 146,000,000 records. Elapsed time: 00:03:00s. Time for last 1,000,000: 1s. Last read position: chr5:141,863,274
INFO 2026-06-03 19:56:31 SinglePassSamProgram Processed 147,000,000 records. Elapsed time: 00:03:01s. Time for last 1,000,000: 1s. Last read position: chr5:149,977,977
INFO 2026-06-03 19:56:32 SinglePassSamProgram Processed 148,000,000 records. Elapsed time: 00:03:02s. Time for last 1,000,000: 1s. Last read position: chr5:150,402,120
INFO 2026-06-03 19:56:33 SinglePassSamProgram Processed 149,000,000 records. Elapsed time: 00:03:03s. Time for last 1,000,000: 1s. Last read position: chr5:150,406,934
INFO 2026-06-03 19:56:35 SinglePassSamProgram Processed 150,000,000 records. Elapsed time: 00:03:05s. Time for last 1,000,000: 1s. Last read position: chr5:151,790,355
INFO 2026-06-03 19:56:36 SinglePassSamProgram Processed 151,000,000 records. Elapsed time: 00:03:06s. Time for last 1,000,000: 1s. Last read position: chr5:169,708,180
INFO 2026-06-03 19:56:37 SinglePassSamProgram Processed 152,000,000 records. Elapsed time: 00:03:07s. Time for last 1,000,000: 1s. Last read position: chr5:171,891,512
INFO 2026-06-03 19:56:38 SinglePassSamProgram Processed 153,000,000 records. Elapsed time: 00:03:08s. Time for last 1,000,000: 1s. Last read position: chr5:177,095,604
INFO 2026-06-03 19:56:40 SinglePassSamProgram Processed 154,000,000 records. Elapsed time: 00:03:10s. Time for last 1,000,000: 1s. Last read position: chr5:178,623,306
INFO 2026-06-03 19:56:41 SinglePassSamProgram Processed 155,000,000 records. Elapsed time: 00:03:11s. Time for last 1,000,000: 1s. Last read position: chr5:179,824,313
INFO 2026-06-03 19:56:42 SinglePassSamProgram Processed 156,000,000 records. Elapsed time: 00:03:12s. Time for last 1,000,000: 1s. Last read position: chr5:181,260,186
INFO 2026-06-03 19:56:43 SinglePassSamProgram Processed 157,000,000 records. Elapsed time: 00:03:13s. Time for last 1,000,000: 1s. Last read position: chr6:7,230,975
INFO 2026-06-03 19:56:44 SinglePassSamProgram Processed 158,000,000 records. Elapsed time: 00:03:14s. Time for last 1,000,000: 1s. Last read position: chr6:16,130,719
INFO 2026-06-03 19:56:46 SinglePassSamProgram Processed 159,000,000 records. Elapsed time: 00:03:16s. Time for last 1,000,000: 1s. Last read position: chr6:26,124,421
INFO 2026-06-03 19:56:47 SinglePassSamProgram Processed 160,000,000 records. Elapsed time: 00:03:17s. Time for last 1,000,000: 1s. Last read position: chr6:27,824,320
INFO 2026-06-03 19:56:48 SinglePassSamProgram Processed 161,000,000 records. Elapsed time: 00:03:18s. Time for last 1,000,000: 1s. Last read position: chr6:30,163,635
INFO 2026-06-03 19:56:49 SinglePassSamProgram Processed 162,000,000 records. Elapsed time: 00:03:20s. Time for last 1,000,000: 1s. Last read position: chr6:30,744,338
INFO 2026-06-03 19:56:51 SinglePassSamProgram Processed 163,000,000 records. Elapsed time: 00:03:21s. Time for last 1,000,000: 1s. Last read position: chr6:31,622,803
INFO 2026-06-03 19:56:52 SinglePassSamProgram Processed 164,000,000 records. Elapsed time: 00:03:22s. Time for last 1,000,000: 1s. Last read position: chr6:31,816,478
INFO 2026-06-03 19:56:53 SinglePassSamProgram Processed 165,000,000 records. Elapsed time: 00:03:23s. Time for last 1,000,000: 1s. Last read position: chr6:31,969,902
INFO 2026-06-03 19:56:55 SinglePassSamProgram Processed 166,000,000 records. Elapsed time: 00:03:25s. Time for last 1,000,000: 1s. Last read position: chr6:32,977,928
INFO 2026-06-03 19:56:56 SinglePassSamProgram Processed 167,000,000 records. Elapsed time: 00:03:26s. Time for last 1,000,000: 1s. Last read position: chr6:33,447,828
INFO 2026-06-03 19:56:57 SinglePassSamProgram Processed 168,000,000 records. Elapsed time: 00:03:27s. Time for last 1,000,000: 1s. Last read position: chr6:36,131,269
INFO 2026-06-03 19:56:59 SinglePassSamProgram Processed 169,000,000 records. Elapsed time: 00:03:29s. Time for last 1,000,000: 1s. Last read position: chr6:42,107,498
INFO 2026-06-03 19:57:00 SinglePassSamProgram Processed 170,000,000 records. Elapsed time: 00:03:30s. Time for last 1,000,000: 1s. Last read position: chr6:43,771,258
INFO 2026-06-03 19:57:02 SinglePassSamProgram Processed 171,000,000 records. Elapsed time: 00:03:32s. Time for last 1,000,000: 1s. Last read position: chr6:53,095,649
INFO 2026-06-03 19:57:03 SinglePassSamProgram Processed 172,000,000 records. Elapsed time: 00:03:33s. Time for last 1,000,000: 1s. Last read position: chr6:70,516,209
INFO 2026-06-03 19:57:05 SinglePassSamProgram Processed 173,000,000 records. Elapsed time: 00:03:35s. Time for last 1,000,000: 1s. Last read position: chr6:82,365,778
INFO 2026-06-03 19:57:06 SinglePassSamProgram Processed 174,000,000 records. Elapsed time: 00:03:36s. Time for last 1,000,000: 1s. Last read position: chr6:99,543,577
INFO 2026-06-03 19:57:07 SinglePassSamProgram Processed 175,000,000 records. Elapsed time: 00:03:37s. Time for last 1,000,000: 1s. Last read position: chr6:111,591,618
INFO 2026-06-03 19:57:09 SinglePassSamProgram Processed 176,000,000 records. Elapsed time: 00:03:39s. Time for last 1,000,000: 1s. Last read position: chr6:128,322,209
INFO 2026-06-03 19:57:10 SinglePassSamProgram Processed 177,000,000 records. Elapsed time: 00:03:40s. Time for last 1,000,000: 1s. Last read position: chr6:138,096,472
INFO 2026-06-03 19:57:11 SinglePassSamProgram Processed 178,000,000 records. Elapsed time: 00:03:41s. Time for last 1,000,000: 1s. Last read position: chr6:148,343,221
INFO 2026-06-03 19:57:13 SinglePassSamProgram Processed 179,000,000 records. Elapsed time: 00:03:43s. Time for last 1,000,000: 1s. Last read position: chr6:157,867,547
INFO 2026-06-03 19:57:14 SinglePassSamProgram Processed 180,000,000 records. Elapsed time: 00:03:44s. Time for last 1,000,000: 1s. Last read position: chr6:159,692,697
INFO 2026-06-03 19:57:15 SinglePassSamProgram Processed 181,000,000 records. Elapsed time: 00:03:45s. Time for last 1,000,000: 1s. Last read position: chr6:167,965,936
INFO 2026-06-03 19:57:17 SinglePassSamProgram Processed 182,000,000 records. Elapsed time: 00:03:47s. Time for last 1,000,000: 1s. Last read position: chr7:1,471,135
INFO 2026-06-03 19:57:18 SinglePassSamProgram Processed 183,000,000 records. Elapsed time: 00:03:48s. Time for last 1,000,000: 1s. Last read position: chr7:4,836,437
INFO 2026-06-03 19:57:19 SinglePassSamProgram Processed 184,000,000 records. Elapsed time: 00:03:49s. Time for last 1,000,000: 1s. Last read position: chr7:5,527,849
INFO 2026-06-03 19:57:20 SinglePassSamProgram Processed 185,000,000 records. Elapsed time: 00:03:50s. Time for last 1,000,000: 1s. Last read position: chr7:5,592,994
INFO 2026-06-03 19:57:22 SinglePassSamProgram Processed 186,000,000 records. Elapsed time: 00:03:52s. Time for last 1,000,000: 1s. Last read position: chr7:16,792,947
INFO 2026-06-03 19:57:23 SinglePassSamProgram Processed 187,000,000 records. Elapsed time: 00:03:53s. Time for last 1,000,000: 1s. Last read position: chr7:27,108,299
INFO 2026-06-03 19:57:24 SinglePassSamProgram Processed 188,000,000 records. Elapsed time: 00:03:54s. Time for last 1,000,000: 1s. Last read position: chr7:39,987,834
INFO 2026-06-03 19:57:26 SinglePassSamProgram Processed 189,000,000 records. Elapsed time: 00:03:56s. Time for last 1,000,000: 1s. Last read position: chr7:44,674,515
INFO 2026-06-03 19:57:27 SinglePassSamProgram Processed 190,000,000 records. Elapsed time: 00:03:57s. Time for last 1,000,000: 1s. Last read position: chr7:55,161,508
INFO 2026-06-03 19:57:28 SinglePassSamProgram Processed 191,000,000 records. Elapsed time: 00:03:58s. Time for last 1,000,000: 1s. Last read position: chr7:72,871,443
INFO 2026-06-03 19:57:29 SinglePassSamProgram Processed 192,000,000 records. Elapsed time: 00:03:59s. Time for last 1,000,000: 1s. Last read position: chr7:73,686,847
INFO 2026-06-03 19:57:31 SinglePassSamProgram Processed 193,000,000 records. Elapsed time: 00:04:01s. Time for last 1,000,000: 1s. Last read position: chr7:75,215,756
INFO 2026-06-03 19:57:32 SinglePassSamProgram Processed 194,000,000 records. Elapsed time: 00:04:02s. Time for last 1,000,000: 1s. Last read position: chr7:76,302,745
INFO 2026-06-03 19:57:33 SinglePassSamProgram Processed 195,000,000 records. Elapsed time: 00:04:03s. Time for last 1,000,000: 1s. Last read position: chr7:87,184,580
INFO 2026-06-03 19:57:34 SinglePassSamProgram Processed 196,000,000 records. Elapsed time: 00:04:04s. Time for last 1,000,000: 1s. Last read position: chr7:93,994,367
INFO 2026-06-03 19:57:36 SinglePassSamProgram Processed 197,000,000 records. Elapsed time: 00:04:06s. Time for last 1,000,000: 1s. Last read position: chr7:96,184,809
INFO 2026-06-03 19:57:37 SinglePassSamProgram Processed 198,000,000 records. Elapsed time: 00:04:07s. Time for last 1,000,000: 1s. Last read position: chr7:99,531,618
INFO 2026-06-03 19:57:38 SinglePassSamProgram Processed 199,000,000 records. Elapsed time: 00:04:08s. Time for last 1,000,000: 1s. Last read position: chr7:100,572,347
INFO 2026-06-03 19:57:40 SinglePassSamProgram Processed 200,000,000 records. Elapsed time: 00:04:10s. Time for last 1,000,000: 1s. Last read position: chr7:100,957,802
INFO 2026-06-03 19:57:41 SinglePassSamProgram Processed 201,000,000 records. Elapsed time: 00:04:11s. Time for last 1,000,000: 1s. Last read position: chr7:100,993,135
INFO 2026-06-03 19:57:42 SinglePassSamProgram Processed 202,000,000 records. Elapsed time: 00:04:12s. Time for last 1,000,000: 1s. Last read position: chr7:100,994,444
INFO 2026-06-03 19:57:44 SinglePassSamProgram Processed 203,000,000 records. Elapsed time: 00:04:14s. Time for last 1,000,000: 1s. Last read position: chr7:100,996,002
INFO 2026-06-03 19:57:45 SinglePassSamProgram Processed 204,000,000 records. Elapsed time: 00:04:15s. Time for last 1,000,000: 1s. Last read position: chr7:100,996,743
INFO 2026-06-03 19:57:46 SinglePassSamProgram Processed 205,000,000 records. Elapsed time: 00:04:16s. Time for last 1,000,000: 1s. Last read position: chr7:100,997,520
INFO 2026-06-03 19:57:47 SinglePassSamProgram Processed 206,000,000 records. Elapsed time: 00:04:17s. Time for last 1,000,000: 1s. Last read position: chr7:100,998,333
INFO 2026-06-03 19:57:48 SinglePassSamProgram Processed 207,000,000 records. Elapsed time: 00:04:18s. Time for last 1,000,000: 1s. Last read position: chr7:100,999,300
INFO 2026-06-03 19:57:50 SinglePassSamProgram Processed 208,000,000 records. Elapsed time: 00:04:20s. Time for last 1,000,000: 1s. Last read position: chr7:101,000,402
INFO 2026-06-03 19:57:51 SinglePassSamProgram Processed 209,000,000 records. Elapsed time: 00:04:21s. Time for last 1,000,000: 1s. Last read position: chr7:101,001,316
INFO 2026-06-03 19:57:52 SinglePassSamProgram Processed 210,000,000 records. Elapsed time: 00:04:22s. Time for last 1,000,000: 1s. Last read position: chr7:101,002,078
INFO 2026-06-03 19:57:53 SinglePassSamProgram Processed 211,000,000 records. Elapsed time: 00:04:23s. Time for last 1,000,000: 1s. Last read position: chr7:101,003,856
INFO 2026-06-03 19:57:54 SinglePassSamProgram Processed 212,000,000 records. Elapsed time: 00:04:24s. Time for last 1,000,000: 1s. Last read position: chr7:102,170,431
INFO 2026-06-03 19:57:56 SinglePassSamProgram Processed 213,000,000 records. Elapsed time: 00:04:26s. Time for last 1,000,000: 1s. Last read position: chr7:102,659,933
INFO 2026-06-03 19:57:57 SinglePassSamProgram Processed 214,000,000 records. Elapsed time: 00:04:27s. Time for last 1,000,000: 1s. Last read position: chr7:107,793,793
INFO 2026-06-03 19:57:58 SinglePassSamProgram Processed 215,000,000 records. Elapsed time: 00:04:28s. Time for last 1,000,000: 1s. Last read position: chr7:122,320,273
INFO 2026-06-03 19:58:00 SinglePassSamProgram Processed 216,000,000 records. Elapsed time: 00:04:30s. Time for last 1,000,000: 1s. Last read position: chr7:128,086,952
INFO 2026-06-03 19:58:01 SinglePassSamProgram Processed 217,000,000 records. Elapsed time: 00:04:31s. Time for last 1,000,000: 1s. Last read position: chr7:133,817,417
INFO 2026-06-03 19:58:02 SinglePassSamProgram Processed 218,000,000 records. Elapsed time: 00:04:32s. Time for last 1,000,000: 1s. Last read position: chr7:139,083,849
INFO 2026-06-03 19:58:03 SinglePassSamProgram Processed 219,000,000 records. Elapsed time: 00:04:34s. Time for last 1,000,000: 1s. Last read position: chr7:142,791,717
INFO 2026-06-03 19:58:05 SinglePassSamProgram Processed 220,000,000 records. Elapsed time: 00:04:35s. Time for last 1,000,000: 1s. Last read position: chr7:144,285,050
INFO 2026-06-03 19:58:06 SinglePassSamProgram Processed 221,000,000 records. Elapsed time: 00:04:36s. Time for last 1,000,000: 1s. Last read position: chr7:149,621,285
INFO 2026-06-03 19:58:08 SinglePassSamProgram Processed 222,000,000 records. Elapsed time: 00:04:38s. Time for last 1,000,000: 1s. Last read position: chr7:151,081,478
INFO 2026-06-03 19:58:09 SinglePassSamProgram Processed 223,000,000 records. Elapsed time: 00:04:39s. Time for last 1,000,000: 1s. Last read position: chr7:155,763,880
INFO 2026-06-03 19:58:10 SinglePassSamProgram Processed 224,000,000 records. Elapsed time: 00:04:41s. Time for last 1,000,000: 1s. Last read position: chr8:8,891,279
INFO 2026-06-03 19:58:12 SinglePassSamProgram Processed 225,000,000 records. Elapsed time: 00:04:42s. Time for last 1,000,000: 1s. Last read position: chr8:18,575,158
INFO 2026-06-03 19:58:13 SinglePassSamProgram Processed 226,000,000 records. Elapsed time: 00:04:43s. Time for last 1,000,000: 1s. Last read position: chr8:22,619,214
INFO 2026-06-03 19:58:14 SinglePassSamProgram Processed 227,000,000 records. Elapsed time: 00:04:44s. Time for last 1,000,000: 1s. Last read position: chr8:28,527,675
INFO 2026-06-03 19:58:16 SinglePassSamProgram Processed 228,000,000 records. Elapsed time: 00:04:46s. Time for last 1,000,000: 1s. Last read position: chr8:37,698,455
INFO 2026-06-03 19:58:17 SinglePassSamProgram Processed 229,000,000 records. Elapsed time: 00:04:47s. Time for last 1,000,000: 1s. Last read position: chr8:38,827,203
INFO 2026-06-03 19:58:18 SinglePassSamProgram Processed 230,000,000 records. Elapsed time: 00:04:49s. Time for last 1,000,000: 1s. Last read position: chr8:47,902,697
INFO 2026-06-03 19:58:20 SinglePassSamProgram Processed 231,000,000 records. Elapsed time: 00:04:50s. Time for last 1,000,000: 1s. Last read position: chr8:65,604,503
INFO 2026-06-03 19:58:21 SinglePassSamProgram Processed 232,000,000 records. Elapsed time: 00:04:51s. Time for last 1,000,000: 1s. Last read position: chr8:80,051,558
INFO 2026-06-03 19:58:22 SinglePassSamProgram Processed 233,000,000 records. Elapsed time: 00:04:52s. Time for last 1,000,000: 1s. Last read position: chr8:98,044,953
INFO 2026-06-03 19:58:24 SinglePassSamProgram Processed 234,000,000 records. Elapsed time: 00:04:54s. Time for last 1,000,000: 1s. Last read position: chr8:102,833,143
INFO 2026-06-03 19:58:25 SinglePassSamProgram Processed 235,000,000 records. Elapsed time: 00:04:55s. Time for last 1,000,000: 1s. Last read position: chr8:124,549,784
INFO 2026-06-03 19:58:26 SinglePassSamProgram Processed 236,000,000 records. Elapsed time: 00:04:56s. Time for last 1,000,000: 1s. Last read position: chr8:140,397,676
INFO 2026-06-03 19:58:28 SinglePassSamProgram Processed 237,000,000 records. Elapsed time: 00:04:58s. Time for last 1,000,000: 1s. Last read position: chr8:143,727,749
INFO 2026-06-03 19:58:29 SinglePassSamProgram Processed 238,000,000 records. Elapsed time: 00:04:59s. Time for last 1,000,000: 1s. Last read position: chr8:143,859,626
INFO 2026-06-03 19:58:30 SinglePassSamProgram Processed 239,000,000 records. Elapsed time: 00:05:00s. Time for last 1,000,000: 1s. Last read position: chr8:143,861,612
INFO 2026-06-03 19:58:31 SinglePassSamProgram Processed 240,000,000 records. Elapsed time: 00:05:01s. Time for last 1,000,000: 1s. Last read position: chr8:143,863,631
INFO 2026-06-03 19:58:32 SinglePassSamProgram Processed 241,000,000 records. Elapsed time: 00:05:02s. Time for last 1,000,000: 1s. Last read position: chr8:143,865,789
INFO 2026-06-03 19:58:34 SinglePassSamProgram Processed 242,000,000 records. Elapsed time: 00:05:04s. Time for last 1,000,000: 1s. Last read position: chr8:143,919,217
INFO 2026-06-03 19:58:35 SinglePassSamProgram Processed 243,000,000 records. Elapsed time: 00:05:05s. Time for last 1,000,000: 1s. Last read position: chr8:144,051,288
INFO 2026-06-03 19:58:36 SinglePassSamProgram Processed 244,000,000 records. Elapsed time: 00:05:06s. Time for last 1,000,000: 1s. Last read position: chr8:144,509,781
INFO 2026-06-03 19:58:38 SinglePassSamProgram Processed 245,000,000 records. Elapsed time: 00:05:08s. Time for last 1,000,000: 1s. Last read position: chr9:6,413,447
INFO 2026-06-03 19:58:39 SinglePassSamProgram Processed 246,000,000 records. Elapsed time: 00:05:09s. Time for last 1,000,000: 1s. Last read position: chr9:27,218,801
INFO 2026-06-03 19:58:40 SinglePassSamProgram Processed 247,000,000 records. Elapsed time: 00:05:10s. Time for last 1,000,000: 1s. Last read position: chr9:35,061,629
INFO 2026-06-03 19:58:41 SinglePassSamProgram Processed 248,000,000 records. Elapsed time: 00:05:12s. Time for last 1,000,000: 1s. Last read position: chr9:36,234,072
INFO 2026-06-03 19:58:43 SinglePassSamProgram Processed 249,000,000 records. Elapsed time: 00:05:13s. Time for last 1,000,000: 1s. Last read position: chr9:71,698,084
INFO 2026-06-03 19:58:44 SinglePassSamProgram Processed 250,000,000 records. Elapsed time: 00:05:14s. Time for last 1,000,000: 1s. Last read position: chr9:83,412,589
INFO 2026-06-03 19:58:45 SinglePassSamProgram Processed 251,000,000 records. Elapsed time: 00:05:15s. Time for last 1,000,000: 1s. Last read position: chr9:92,719,006
INFO 2026-06-03 19:58:47 SinglePassSamProgram Processed 252,000,000 records. Elapsed time: 00:05:17s. Time for last 1,000,000: 1s. Last read position: chr9:95,916,346
INFO 2026-06-03 19:58:48 SinglePassSamProgram Processed 253,000,000 records. Elapsed time: 00:05:18s. Time for last 1,000,000: 1s. Last read position: chr9:101,552,560
INFO 2026-06-03 19:58:49 SinglePassSamProgram Processed 254,000,000 records. Elapsed time: 00:05:19s. Time for last 1,000,000: 1s. Last read position: chr9:112,227,468
INFO 2026-06-03 19:58:50 SinglePassSamProgram Processed 255,000,000 records. Elapsed time: 00:05:21s. Time for last 1,000,000: 1s. Last read position: chr9:115,046,663
INFO 2026-06-03 19:58:52 SinglePassSamProgram Processed 256,000,000 records. Elapsed time: 00:05:22s. Time for last 1,000,000: 1s. Last read position: chr9:121,770,577
INFO 2026-06-03 19:58:53 SinglePassSamProgram Processed 257,000,000 records. Elapsed time: 00:05:23s. Time for last 1,000,000: 1s. Last read position: chr9:127,450,743
INFO 2026-06-03 19:58:54 SinglePassSamProgram Processed 258,000,000 records. Elapsed time: 00:05:25s. Time for last 1,000,000: 1s. Last read position: chr9:128,258,119
INFO 2026-06-03 19:58:56 SinglePassSamProgram Processed 259,000,000 records. Elapsed time: 00:05:26s. Time for last 1,000,000: 1s. Last read position: chr9:129,099,876
INFO 2026-06-03 19:58:57 SinglePassSamProgram Processed 260,000,000 records. Elapsed time: 00:05:27s. Time for last 1,000,000: 1s. Last read position: chr9:131,470,784
INFO 2026-06-03 19:58:59 SinglePassSamProgram Processed 261,000,000 records. Elapsed time: 00:05:29s. Time for last 1,000,000: 1s. Last read position: chr9:133,363,621
INFO 2026-06-03 19:59:00 SinglePassSamProgram Processed 262,000,000 records. Elapsed time: 00:05:30s. Time for last 1,000,000: 1s. Last read position: chr9:135,485,699
INFO 2026-06-03 19:59:01 SinglePassSamProgram Processed 263,000,000 records. Elapsed time: 00:05:31s. Time for last 1,000,000: 1s. Last read position: chr9:136,519,554
INFO 2026-06-03 19:59:03 SinglePassSamProgram Processed 264,000,000 records. Elapsed time: 00:05:33s. Time for last 1,000,000: 1s. Last read position: chr9:137,110,885
INFO 2026-06-03 19:59:04 SinglePassSamProgram Processed 265,000,000 records. Elapsed time: 00:05:34s. Time for last 1,000,000: 1s. Last read position: chr10:239,480
INFO 2026-06-03 19:59:05 SinglePassSamProgram Processed 266,000,000 records. Elapsed time: 00:05:35s. Time for last 1,000,000: 1s. Last read position: chr10:8,009,997
INFO 2026-06-03 19:59:07 SinglePassSamProgram Processed 267,000,000 records. Elapsed time: 00:05:37s. Time for last 1,000,000: 1s. Last read position: chr10:24,524,360
INFO 2026-06-03 19:59:08 SinglePassSamProgram Processed 268,000,000 records. Elapsed time: 00:05:38s. Time for last 1,000,000: 1s. Last read position: chr10:32,021,083
INFO 2026-06-03 19:59:09 SinglePassSamProgram Processed 269,000,000 records. Elapsed time: 00:05:39s. Time for last 1,000,000: 1s. Last read position: chr10:43,557,068
INFO 2026-06-03 19:59:10 SinglePassSamProgram Processed 270,000,000 records. Elapsed time: 00:05:40s. Time for last 1,000,000: 1s. Last read position: chr10:49,473,563
INFO 2026-06-03 19:59:12 SinglePassSamProgram Processed 271,000,000 records. Elapsed time: 00:05:42s. Time for last 1,000,000: 1s. Last read position: chr10:68,337,233
INFO 2026-06-03 19:59:13 SinglePassSamProgram Processed 272,000,000 records. Elapsed time: 00:05:43s. Time for last 1,000,000: 1s. Last read position: chr10:73,053,484
INFO 2026-06-03 19:59:14 SinglePassSamProgram Processed 273,000,000 records. Elapsed time: 00:05:44s. Time for last 1,000,000: 1s. Last read position: chr10:77,926,346
INFO 2026-06-03 19:59:15 SinglePassSamProgram Processed 274,000,000 records. Elapsed time: 00:05:45s. Time for last 1,000,000: 1s. Last read position: chr10:87,009,791
INFO 2026-06-03 19:59:16 SinglePassSamProgram Processed 275,000,000 records. Elapsed time: 00:05:47s. Time for last 1,000,000: 1s. Last read position: chr10:93,681,482
INFO 2026-06-03 19:59:18 SinglePassSamProgram Processed 276,000,000 records. Elapsed time: 00:05:48s. Time for last 1,000,000: 1s. Last read position: chr10:97,748,307
INFO 2026-06-03 19:59:19 SinglePassSamProgram Processed 277,000,000 records. Elapsed time: 00:05:49s. Time for last 1,000,000: 1s. Last read position: chr10:102,141,268
INFO 2026-06-03 19:59:20 SinglePassSamProgram Processed 278,000,000 records. Elapsed time: 00:05:50s. Time for last 1,000,000: 1s. Last read position: chr10:104,062,282
INFO 2026-06-03 19:59:21 SinglePassSamProgram Processed 279,000,000 records. Elapsed time: 00:05:51s. Time for last 1,000,000: 1s. Last read position: chr10:117,374,744
INFO 2026-06-03 19:59:23 SinglePassSamProgram Processed 280,000,000 records. Elapsed time: 00:05:53s. Time for last 1,000,000: 1s. Last read position: chr10:122,489,473
INFO 2026-06-03 19:59:24 SinglePassSamProgram Processed 281,000,000 records. Elapsed time: 00:05:54s. Time for last 1,000,000: 1s. Last read position: chr10:122,602,060
INFO 2026-06-03 19:59:25 SinglePassSamProgram Processed 282,000,000 records. Elapsed time: 00:05:55s. Time for last 1,000,000: 1s. Last read position: chr10:122,643,121
INFO 2026-06-03 19:59:26 SinglePassSamProgram Processed 283,000,000 records. Elapsed time: 00:05:56s. Time for last 1,000,000: 1s. Last read position: chr10:132,405,195
INFO 2026-06-03 19:59:28 SinglePassSamProgram Processed 284,000,000 records. Elapsed time: 00:05:58s. Time for last 1,000,000: 1s. Last read position: chr11:319,932
INFO 2026-06-03 19:59:29 SinglePassSamProgram Processed 285,000,000 records. Elapsed time: 00:05:59s. Time for last 1,000,000: 1s. Last read position: chr11:640,480
INFO 2026-06-03 19:59:30 SinglePassSamProgram Processed 286,000,000 records. Elapsed time: 00:06:00s. Time for last 1,000,000: 1s. Last read position: chr11:1,075,867
INFO 2026-06-03 19:59:31 SinglePassSamProgram Processed 287,000,000 records. Elapsed time: 00:06:01s. Time for last 1,000,000: 1s. Last read position: chr11:1,083,495
INFO 2026-06-03 19:59:32 SinglePassSamProgram Processed 288,000,000 records. Elapsed time: 00:06:03s. Time for last 1,000,000: 1s. Last read position: chr11:1,088,294
INFO 2026-06-03 19:59:34 SinglePassSamProgram Processed 289,000,000 records. Elapsed time: 00:06:04s. Time for last 1,000,000: 1s. Last read position: chr11:1,097,277
INFO 2026-06-03 19:59:35 SinglePassSamProgram Processed 290,000,000 records. Elapsed time: 00:06:05s. Time for last 1,000,000: 1s. Last read position: chr11:1,239,529
INFO 2026-06-03 19:59:36 SinglePassSamProgram Processed 291,000,000 records. Elapsed time: 00:06:06s. Time for last 1,000,000: 1s. Last read position: chr11:1,243,089
INFO 2026-06-03 19:59:37 SinglePassSamProgram Processed 292,000,000 records. Elapsed time: 00:06:07s. Time for last 1,000,000: 1s. Last read position: chr11:1,243,829
INFO 2026-06-03 19:59:38 SinglePassSamProgram Processed 293,000,000 records. Elapsed time: 00:06:08s. Time for last 1,000,000: 1s. Last read position: chr11:1,244,495
INFO 2026-06-03 19:59:40 SinglePassSamProgram Processed 294,000,000 records. Elapsed time: 00:06:10s. Time for last 1,000,000: 1s. Last read position: chr11:1,245,128
INFO 2026-06-03 19:59:41 SinglePassSamProgram Processed 295,000,000 records. Elapsed time: 00:06:11s. Time for last 1,000,000: 1s. Last read position: chr11:1,246,046
INFO 2026-06-03 19:59:42 SinglePassSamProgram Processed 296,000,000 records. Elapsed time: 00:06:12s. Time for last 1,000,000: 1s. Last read position: chr11:1,247,125
INFO 2026-06-03 19:59:43 SinglePassSamProgram Processed 297,000,000 records. Elapsed time: 00:06:13s. Time for last 1,000,000: 1s. Last read position: chr11:1,247,836
INFO 2026-06-03 19:59:44 SinglePassSamProgram Processed 298,000,000 records. Elapsed time: 00:06:14s. Time for last 1,000,000: 1s. Last read position: chr11:1,248,458
INFO 2026-06-03 19:59:46 SinglePassSamProgram Processed 299,000,000 records. Elapsed time: 00:06:16s. Time for last 1,000,000: 1s. Last read position: chr11:1,249,035
INFO 2026-06-03 19:59:47 SinglePassSamProgram Processed 300,000,000 records. Elapsed time: 00:06:17s. Time for last 1,000,000: 1s. Last read position: chr11:1,250,013
INFO 2026-06-03 19:59:48 SinglePassSamProgram Processed 301,000,000 records. Elapsed time: 00:06:18s. Time for last 1,000,000: 1s. Last read position: chr11:1,250,764
INFO 2026-06-03 19:59:49 SinglePassSamProgram Processed 302,000,000 records. Elapsed time: 00:06:20s. Time for last 1,000,000: 1s. Last read position: chr11:1,598,157
INFO 2026-06-03 19:59:51 SinglePassSamProgram Processed 303,000,000 records. Elapsed time: 00:06:21s. Time for last 1,000,000: 1s. Last read position: chr11:3,771,835
INFO 2026-06-03 19:59:52 SinglePassSamProgram Processed 304,000,000 records. Elapsed time: 00:06:22s. Time for last 1,000,000: 1s. Last read position: chr11:8,717,749
INFO 2026-06-03 19:59:54 SinglePassSamProgram Processed 305,000,000 records. Elapsed time: 00:06:24s. Time for last 1,000,000: 1s. Last read position: chr11:13,963,046
INFO 2026-06-03 19:59:55 SinglePassSamProgram Processed 306,000,000 records. Elapsed time: 00:06:25s. Time for last 1,000,000: 1s. Last read position: chr11:22,726,337
INFO 2026-06-03 19:59:57 SinglePassSamProgram Processed 307,000,000 records. Elapsed time: 00:06:27s. Time for last 1,000,000: 1s. Last read position: chr11:43,318,778
INFO 2026-06-03 19:59:58 SinglePassSamProgram Processed 308,000,000 records. Elapsed time: 00:06:28s. Time for last 1,000,000: 1s. Last read position: chr11:46,374,398
INFO 2026-06-03 20:00:00 SinglePassSamProgram Processed 309,000,000 records. Elapsed time: 00:06:30s. Time for last 1,000,000: 1s. Last read position: chr11:48,123,848
INFO 2026-06-03 20:00:01 SinglePassSamProgram Processed 310,000,000 records. Elapsed time: 00:06:31s. Time for last 1,000,000: 1s. Last read position: chr11:58,579,503
INFO 2026-06-03 20:00:03 SinglePassSamProgram Processed 311,000,000 records. Elapsed time: 00:06:33s. Time for last 1,000,000: 2s. Last read position: chr11:61,840,348
INFO 2026-06-03 20:00:05 SinglePassSamProgram Processed 312,000,000 records. Elapsed time: 00:06:35s. Time for last 1,000,000: 1s. Last read position: chr11:62,527,875
INFO 2026-06-03 20:00:06 SinglePassSamProgram Processed 313,000,000 records. Elapsed time: 00:06:37s. Time for last 1,000,000: 1s. Last read position: chr11:62,722,851
INFO 2026-06-03 20:00:08 SinglePassSamProgram Processed 314,000,000 records. Elapsed time: 00:06:38s. Time for last 1,000,000: 1s. Last read position: chr11:64,262,540
INFO 2026-06-03 20:00:09 SinglePassSamProgram Processed 315,000,000 records. Elapsed time: 00:06:40s. Time for last 1,000,000: 1s. Last read position: chr11:65,120,740
INFO 2026-06-03 20:00:11 SinglePassSamProgram Processed 316,000,000 records. Elapsed time: 00:06:41s. Time for last 1,000,000: 1s. Last read position: chr11:65,618,431
INFO 2026-06-03 20:00:12 SinglePassSamProgram Processed 317,000,000 records. Elapsed time: 00:06:42s. Time for last 1,000,000: 1s. Last read position: chr11:66,070,585
INFO 2026-06-03 20:00:13 SinglePassSamProgram Processed 318,000,000 records. Elapsed time: 00:06:43s. Time for last 1,000,000: 1s. Last read position: chr11:67,279,443
INFO 2026-06-03 20:00:15 SinglePassSamProgram Processed 319,000,000 records. Elapsed time: 00:06:45s. Time for last 1,000,000: 1s. Last read position: chr11:68,158,374
INFO 2026-06-03 20:00:16 SinglePassSamProgram Processed 320,000,000 records. Elapsed time: 00:06:46s. Time for last 1,000,000: 1s. Last read position: chr11:70,273,888
INFO 2026-06-03 20:00:18 SinglePassSamProgram Processed 321,000,000 records. Elapsed time: 00:06:48s. Time for last 1,000,000: 1s. Last read position: chr11:72,754,918
INFO 2026-06-03 20:00:19 SinglePassSamProgram Processed 322,000,000 records. Elapsed time: 00:06:49s. Time for last 1,000,000: 1s. Last read position: chr11:75,568,751
INFO 2026-06-03 20:00:20 SinglePassSamProgram Processed 323,000,000 records. Elapsed time: 00:06:50s. Time for last 1,000,000: 1s. Last read position: chr11:85,983,930
INFO 2026-06-03 20:00:22 SinglePassSamProgram Processed 324,000,000 records. Elapsed time: 00:06:52s. Time for last 1,000,000: 1s. Last read position: chr11:102,350,191
INFO 2026-06-03 20:00:23 SinglePassSamProgram Processed 325,000,000 records. Elapsed time: 00:06:53s. Time for last 1,000,000: 1s. Last read position: chr11:113,329,963
INFO 2026-06-03 20:00:24 SinglePassSamProgram Processed 326,000,000 records. Elapsed time: 00:06:54s. Time for last 1,000,000: 1s. Last read position: chr11:118,504,114
INFO 2026-06-03 20:00:26 SinglePassSamProgram Processed 327,000,000 records. Elapsed time: 00:06:56s. Time for last 1,000,000: 1s. Last read position: chr11:119,420,076
INFO 2026-06-03 20:00:27 SinglePassSamProgram Processed 328,000,000 records. Elapsed time: 00:06:57s. Time for last 1,000,000: 1s. Last read position: chr11:124,654,707
INFO 2026-06-03 20:00:29 SinglePassSamProgram Processed 329,000,000 records. Elapsed time: 00:06:59s. Time for last 1,000,000: 1s. Last read position: chr11:130,126,797
INFO 2026-06-03 20:00:30 SinglePassSamProgram Processed 330,000,000 records. Elapsed time: 00:07:00s. Time for last 1,000,000: 1s. Last read position: chr12:1,780,486
INFO 2026-06-03 20:00:31 SinglePassSamProgram Processed 331,000,000 records. Elapsed time: 00:07:01s. Time for last 1,000,000: 1s. Last read position: chr12:6,236,258
INFO 2026-06-03 20:00:32 SinglePassSamProgram Processed 332,000,000 records. Elapsed time: 00:07:03s. Time for last 1,000,000: 1s. Last read position: chr12:6,766,538
INFO 2026-06-03 20:00:34 SinglePassSamProgram Processed 333,000,000 records. Elapsed time: 00:07:04s. Time for last 1,000,000: 1s. Last read position: chr12:7,483,374
INFO 2026-06-03 20:00:35 SinglePassSamProgram Processed 334,000,000 records. Elapsed time: 00:07:05s. Time for last 1,000,000: 1s. Last read position: chr12:11,869,898
INFO 2026-06-03 20:00:36 SinglePassSamProgram Processed 335,000,000 records. Elapsed time: 00:07:06s. Time for last 1,000,000: 1s. Last read position: chr12:26,122,817
INFO 2026-06-03 20:00:38 SinglePassSamProgram Processed 336,000,000 records. Elapsed time: 00:07:08s. Time for last 1,000,000: 1s. Last read position: chr12:42,144,421
INFO 2026-06-03 20:00:39 SinglePassSamProgram Processed 337,000,000 records. Elapsed time: 00:07:09s. Time for last 1,000,000: 1s. Last read position: chr12:49,026,979
INFO 2026-06-03 20:00:41 SinglePassSamProgram Processed 338,000,000 records. Elapsed time: 00:07:11s. Time for last 1,000,000: 2s. Last read position: chr12:49,185,294
INFO 2026-06-03 20:00:43 SinglePassSamProgram Processed 339,000,000 records. Elapsed time: 00:07:13s. Time for last 1,000,000: 1s. Last read position: chr12:51,240,884
INFO 2026-06-03 20:00:44 SinglePassSamProgram Processed 340,000,000 records. Elapsed time: 00:07:14s. Time for last 1,000,000: 1s. Last read position: chr12:53,037,548
INFO 2026-06-03 20:00:45 SinglePassSamProgram Processed 341,000,000 records. Elapsed time: 00:07:15s. Time for last 1,000,000: 1s. Last read position: chr12:53,722,051
INFO 2026-06-03 20:00:47 SinglePassSamProgram Processed 342,000,000 records. Elapsed time: 00:07:17s. Time for last 1,000,000: 1s. Last read position: chr12:55,803,668
INFO 2026-06-03 20:00:48 SinglePassSamProgram Processed 343,000,000 records. Elapsed time: 00:07:18s. Time for last 1,000,000: 1s. Last read position: chr12:56,310,946
INFO 2026-06-03 20:00:49 SinglePassSamProgram Processed 344,000,000 records. Elapsed time: 00:07:20s. Time for last 1,000,000: 1s. Last read position: chr12:57,095,304
INFO 2026-06-03 20:00:51 SinglePassSamProgram Processed 345,000,000 records. Elapsed time: 00:07:21s. Time for last 1,000,000: 1s. Last read position: chr12:57,231,479
INFO 2026-06-03 20:00:52 SinglePassSamProgram Processed 346,000,000 records. Elapsed time: 00:07:22s. Time for last 1,000,000: 1s. Last read position: chr12:62,965,328
INFO 2026-06-03 20:00:53 SinglePassSamProgram Processed 347,000,000 records. Elapsed time: 00:07:24s. Time for last 1,000,000: 1s. Last read position: chr12:70,572,063
INFO 2026-06-03 20:00:55 SinglePassSamProgram Processed 348,000,000 records. Elapsed time: 00:07:25s. Time for last 1,000,000: 1s. Last read position: chr12:89,524,205
INFO 2026-06-03 20:00:56 SinglePassSamProgram Processed 349,000,000 records. Elapsed time: 00:07:26s. Time for last 1,000,000: 1s. Last read position: chr12:101,352,088
INFO 2026-06-03 20:00:57 SinglePassSamProgram Processed 350,000,000 records. Elapsed time: 00:07:27s. Time for last 1,000,000: 1s. Last read position: chr12:108,623,762
INFO 2026-06-03 20:00:59 SinglePassSamProgram Processed 351,000,000 records. Elapsed time: 00:07:29s. Time for last 1,000,000: 1s. Last read position: chr12:112,013,501
INFO 2026-06-03 20:01:00 SinglePassSamProgram Processed 352,000,000 records. Elapsed time: 00:07:30s. Time for last 1,000,000: 1s. Last read position: chr12:115,991,200
INFO 2026-06-03 20:01:01 SinglePassSamProgram Processed 353,000,000 records. Elapsed time: 00:07:31s. Time for last 1,000,000: 1s. Last read position: chr12:120,291,779
INFO 2026-06-03 20:01:02 SinglePassSamProgram Processed 354,000,000 records. Elapsed time: 00:07:32s. Time for last 1,000,000: 1s. Last read position: chr12:122,244,696
INFO 2026-06-03 20:01:04 SinglePassSamProgram Processed 355,000,000 records. Elapsed time: 00:07:34s. Time for last 1,000,000: 1s. Last read position: chr12:124,337,009
INFO 2026-06-03 20:01:05 SinglePassSamProgram Processed 356,000,000 records. Elapsed time: 00:07:35s. Time for last 1,000,000: 1s. Last read position: chr12:132,044,172
INFO 2026-06-03 20:01:06 SinglePassSamProgram Processed 357,000,000 records. Elapsed time: 00:07:36s. Time for last 1,000,000: 1s. Last read position: chr13:19,993,124
INFO 2026-06-03 20:01:08 SinglePassSamProgram Processed 358,000,000 records. Elapsed time: 00:07:38s. Time for last 1,000,000: 1s. Last read position: chr13:27,254,244
INFO 2026-06-03 20:01:09 SinglePassSamProgram Processed 359,000,000 records. Elapsed time: 00:07:39s. Time for last 1,000,000: 1s. Last read position: chr13:37,590,387
INFO 2026-06-03 20:01:11 SinglePassSamProgram Processed 360,000,000 records. Elapsed time: 00:07:41s. Time for last 1,000,000: 1s. Last read position: chr13:45,491,438
INFO 2026-06-03 20:01:12 SinglePassSamProgram Processed 361,000,000 records. Elapsed time: 00:07:42s. Time for last 1,000,000: 1s. Last read position: chr13:57,634,543
INFO 2026-06-03 20:01:13 SinglePassSamProgram Processed 362,000,000 records. Elapsed time: 00:07:43s. Time for last 1,000,000: 1s. Last read position: chr13:80,337,517
INFO 2026-06-03 20:01:15 SinglePassSamProgram Processed 363,000,000 records. Elapsed time: 00:07:45s. Time for last 1,000,000: 1s. Last read position: chr13:106,559,564
INFO 2026-06-03 20:01:16 SinglePassSamProgram Processed 364,000,000 records. Elapsed time: 00:07:46s. Time for last 1,000,000: 1s. Last read position: chr13:110,207,418
INFO 2026-06-03 20:01:18 SinglePassSamProgram Processed 365,000,000 records. Elapsed time: 00:07:48s. Time for last 1,000,000: 1s. Last read position: chr13:110,508,074
INFO 2026-06-03 20:01:19 SinglePassSamProgram Processed 366,000,000 records. Elapsed time: 00:07:49s. Time for last 1,000,000: 1s. Last read position: chr13:114,282,042
INFO 2026-06-03 20:01:20 SinglePassSamProgram Processed 367,000,000 records. Elapsed time: 00:07:50s. Time for last 1,000,000: 1s. Last read position: chr14:22,836,813
INFO 2026-06-03 20:01:21 SinglePassSamProgram Processed 368,000,000 records. Elapsed time: 00:07:51s. Time for last 1,000,000: 1s. Last read position: chr14:24,068,844
INFO 2026-06-03 20:01:22 SinglePassSamProgram Processed 369,000,000 records. Elapsed time: 00:07:53s. Time for last 1,000,000: 1s. Last read position: chr14:31,149,132
INFO 2026-06-03 20:01:24 SinglePassSamProgram Processed 370,000,000 records. Elapsed time: 00:07:54s. Time for last 1,000,000: 1s. Last read position: chr14:49,586,658
INFO 2026-06-03 20:01:25 SinglePassSamProgram Processed 371,000,000 records. Elapsed time: 00:07:55s. Time for last 1,000,000: 1s. Last read position: chr14:55,138,215
INFO 2026-06-03 20:01:26 SinglePassSamProgram Processed 372,000,000 records. Elapsed time: 00:07:57s. Time for last 1,000,000: 1s. Last read position: chr14:64,162,252
INFO 2026-06-03 20:01:28 SinglePassSamProgram Processed 373,000,000 records. Elapsed time: 00:07:58s. Time for last 1,000,000: 1s. Last read position: chr14:68,874,977
INFO 2026-06-03 20:01:29 SinglePassSamProgram Processed 374,000,000 records. Elapsed time: 00:07:59s. Time for last 1,000,000: 1s. Last read position: chr14:73,277,133
INFO 2026-06-03 20:01:30 SinglePassSamProgram Processed 375,000,000 records. Elapsed time: 00:08:01s. Time for last 1,000,000: 1s. Last read position: chr14:75,281,199
INFO 2026-06-03 20:01:32 SinglePassSamProgram Processed 376,000,000 records. Elapsed time: 00:08:02s. Time for last 1,000,000: 1s. Last read position: chr14:91,798,342
INFO 2026-06-03 20:01:34 SinglePassSamProgram Processed 377,000,000 records. Elapsed time: 00:08:04s. Time for last 1,000,000: 1s. Last read position: chr14:94,383,128
INFO 2026-06-03 20:01:35 SinglePassSamProgram Processed 378,000,000 records. Elapsed time: 00:08:05s. Time for last 1,000,000: 1s. Last read position: chr14:102,005,054
INFO 2026-06-03 20:01:36 SinglePassSamProgram Processed 379,000,000 records. Elapsed time: 00:08:06s. Time for last 1,000,000: 1s. Last read position: chr14:103,520,255
INFO 2026-06-03 20:01:38 SinglePassSamProgram Processed 380,000,000 records. Elapsed time: 00:08:08s. Time for last 1,000,000: 1s. Last read position: chr14:104,941,930
INFO 2026-06-03 20:01:39 SinglePassSamProgram Processed 381,000,000 records. Elapsed time: 00:08:09s. Time for last 1,000,000: 1s. Last read position: chr14:105,707,254
INFO 2026-06-03 20:01:40 SinglePassSamProgram Processed 382,000,000 records. Elapsed time: 00:08:10s. Time for last 1,000,000: 1s. Last read position: chr15:28,222,064
INFO 2026-06-03 20:01:41 SinglePassSamProgram Processed 383,000,000 records. Elapsed time: 00:08:12s. Time for last 1,000,000: 1s. Last read position: chr15:33,066,721
INFO 2026-06-03 20:01:43 SinglePassSamProgram Processed 384,000,000 records. Elapsed time: 00:08:13s. Time for last 1,000,000: 1s. Last read position: chr15:40,200,947
INFO 2026-06-03 20:01:45 SinglePassSamProgram Processed 385,000,000 records. Elapsed time: 00:08:15s. Time for last 1,000,000: 1s. Last read position: chr15:41,834,825
INFO 2026-06-03 20:01:46 SinglePassSamProgram Processed 386,000,000 records. Elapsed time: 00:08:16s. Time for last 1,000,000: 1s. Last read position: chr15:43,766,741
INFO 2026-06-03 20:01:47 SinglePassSamProgram Processed 387,000,000 records. Elapsed time: 00:08:18s. Time for last 1,000,000: 1s. Last read position: chr15:45,135,641
INFO 2026-06-03 20:01:49 SinglePassSamProgram Processed 388,000,000 records. Elapsed time: 00:08:19s. Time for last 1,000,000: 1s. Last read position: chr15:55,185,369
INFO 2026-06-03 20:01:50 SinglePassSamProgram Processed 389,000,000 records. Elapsed time: 00:08:20s. Time for last 1,000,000: 1s. Last read position: chr15:60,393,206
INFO 2026-06-03 20:01:52 SinglePassSamProgram Processed 390,000,000 records. Elapsed time: 00:08:22s. Time for last 1,000,000: 1s. Last read position: chr15:64,460,592
INFO 2026-06-03 20:01:53 SinglePassSamProgram Processed 391,000,000 records. Elapsed time: 00:08:23s. Time for last 1,000,000: 1s. Last read position: chr15:69,453,704
INFO 2026-06-03 20:01:54 SinglePassSamProgram Processed 392,000,000 records. Elapsed time: 00:08:24s. Time for last 1,000,000: 1s. Last read position: chr15:74,033,265
INFO 2026-06-03 20:01:56 SinglePassSamProgram Processed 393,000,000 records. Elapsed time: 00:08:26s. Time for last 1,000,000: 1s. Last read position: chr15:75,650,549
INFO 2026-06-03 20:01:57 SinglePassSamProgram Processed 394,000,000 records. Elapsed time: 00:08:27s. Time for last 1,000,000: 1s. Last read position: chr15:80,922,065
INFO 2026-06-03 20:01:58 SinglePassSamProgram Processed 395,000,000 records. Elapsed time: 00:08:28s. Time for last 1,000,000: 1s. Last read position: chr15:85,543,782
INFO 2026-06-03 20:02:00 SinglePassSamProgram Processed 396,000,000 records. Elapsed time: 00:08:30s. Time for last 1,000,000: 1s. Last read position: chr15:89,623,888
INFO 2026-06-03 20:02:01 SinglePassSamProgram Processed 397,000,000 records. Elapsed time: 00:08:31s. Time for last 1,000,000: 1s. Last read position: chr15:92,953,403
INFO 2026-06-03 20:02:02 SinglePassSamProgram Processed 398,000,000 records. Elapsed time: 00:08:32s. Time for last 1,000,000: 1s. Last read position: chr16:372,245
INFO 2026-06-03 20:02:04 SinglePassSamProgram Processed 399,000,000 records. Elapsed time: 00:08:34s. Time for last 1,000,000: 1s. Last read position: chr16:1,195,506
INFO 2026-06-03 20:02:05 SinglePassSamProgram Processed 400,000,000 records. Elapsed time: 00:08:35s. Time for last 1,000,000: 1s. Last read position: chr16:1,980,006
INFO 2026-06-03 20:02:07 SinglePassSamProgram Processed 401,000,000 records. Elapsed time: 00:08:37s. Time for last 1,000,000: 1s. Last read position: chr16:2,297,821
INFO 2026-06-03 20:02:08 SinglePassSamProgram Processed 402,000,000 records. Elapsed time: 00:08:38s. Time for last 1,000,000: 1s. Last read position: chr16:2,766,491
INFO 2026-06-03 20:02:09 SinglePassSamProgram Processed 403,000,000 records. Elapsed time: 00:08:39s. Time for last 1,000,000: 1s. Last read position: chr16:3,476,280
INFO 2026-06-03 20:02:10 SinglePassSamProgram Processed 404,000,000 records. Elapsed time: 00:08:40s. Time for last 1,000,000: 1s. Last read position: chr16:8,801,816
INFO 2026-06-03 20:02:12 SinglePassSamProgram Processed 405,000,000 records. Elapsed time: 00:08:42s. Time for last 1,000,000: 1s. Last read position: chr16:14,733,298
INFO 2026-06-03 20:02:13 SinglePassSamProgram Processed 406,000,000 records. Elapsed time: 00:08:43s. Time for last 1,000,000: 1s. Last read position: chr16:15,363,972
INFO 2026-06-03 20:02:14 SinglePassSamProgram Processed 407,000,000 records. Elapsed time: 00:08:44s. Time for last 1,000,000: 1s. Last read position: chr16:16,360,816
INFO 2026-06-03 20:02:16 SinglePassSamProgram Processed 408,000,000 records. Elapsed time: 00:08:46s. Time for last 1,000,000: 1s. Last read position: chr16:18,393,453
INFO 2026-06-03 20:02:17 SinglePassSamProgram Processed 409,000,000 records. Elapsed time: 00:08:47s. Time for last 1,000,000: 1s. Last read position: chr16:21,250,697
INFO 2026-06-03 20:02:18 SinglePassSamProgram Processed 410,000,000 records. Elapsed time: 00:08:48s. Time for last 1,000,000: 1s. Last read position: chr16:21,834,932
INFO 2026-06-03 20:02:19 SinglePassSamProgram Processed 411,000,000 records. Elapsed time: 00:08:49s. Time for last 1,000,000: 1s. Last read position: chr16:22,522,086
INFO 2026-06-03 20:02:20 SinglePassSamProgram Processed 412,000,000 records. Elapsed time: 00:08:51s. Time for last 1,000,000: 1s. Last read position: chr16:23,691,319
INFO 2026-06-03 20:02:22 SinglePassSamProgram Processed 413,000,000 records. Elapsed time: 00:08:52s. Time for last 1,000,000: 1s. Last read position: chr16:28,495,356
INFO 2026-06-03 20:02:23 SinglePassSamProgram Processed 414,000,000 records. Elapsed time: 00:08:53s. Time for last 1,000,000: 1s. Last read position: chr16:29,383,848
INFO 2026-06-03 20:02:24 SinglePassSamProgram Processed 415,000,000 records. Elapsed time: 00:08:54s. Time for last 1,000,000: 1s. Last read position: chr16:29,806,693
INFO 2026-06-03 20:02:25 SinglePassSamProgram Processed 416,000,000 records. Elapsed time: 00:08:56s. Time for last 1,000,000: 1s. Last read position: chr16:30,086,281
INFO 2026-06-03 20:02:27 SinglePassSamProgram Processed 417,000,000 records. Elapsed time: 00:08:57s. Time for last 1,000,000: 1s. Last read position: chr16:30,532,728
INFO 2026-06-03 20:02:28 SinglePassSamProgram Processed 418,000,000 records. Elapsed time: 00:08:58s. Time for last 1,000,000: 1s. Last read position: chr16:31,117,784
INFO 2026-06-03 20:02:29 SinglePassSamProgram Processed 419,000,000 records. Elapsed time: 00:08:59s. Time for last 1,000,000: 1s. Last read position: chr16:31,916,355
INFO 2026-06-03 20:02:30 SinglePassSamProgram Processed 420,000,000 records. Elapsed time: 00:09:00s. Time for last 1,000,000: 1s. Last read position: chr16:55,485,696
INFO 2026-06-03 20:02:32 SinglePassSamProgram Processed 421,000,000 records. Elapsed time: 00:09:02s. Time for last 1,000,000: 1s. Last read position: chr16:57,774,979
INFO 2026-06-03 20:02:33 SinglePassSamProgram Processed 422,000,000 records. Elapsed time: 00:09:03s. Time for last 1,000,000: 1s. Last read position: chr16:67,237,603
INFO 2026-06-03 20:02:35 SinglePassSamProgram Processed 423,000,000 records. Elapsed time: 00:09:05s. Time for last 1,000,000: 1s. Last read position: chr16:68,819,298
INFO 2026-06-03 20:02:36 SinglePassSamProgram Processed 424,000,000 records. Elapsed time: 00:09:06s. Time for last 1,000,000: 1s. Last read position: chr16:70,514,389
INFO 2026-06-03 20:02:37 SinglePassSamProgram Processed 425,000,000 records. Elapsed time: 00:09:07s. Time for last 1,000,000: 1s. Last read position: chr16:74,606,727
INFO 2026-06-03 20:02:38 SinglePassSamProgram Processed 426,000,000 records. Elapsed time: 00:09:08s. Time for last 1,000,000: 1s. Last read position: chr16:83,912,287
INFO 2026-06-03 20:02:40 SinglePassSamProgram Processed 427,000,000 records. Elapsed time: 00:09:10s. Time for last 1,000,000: 1s. Last read position: chr16:88,428,281
INFO 2026-06-03 20:02:41 SinglePassSamProgram Processed 428,000,000 records. Elapsed time: 00:09:11s. Time for last 1,000,000: 1s. Last read position: chr16:88,805,497
INFO 2026-06-03 20:02:42 SinglePassSamProgram Processed 429,000,000 records. Elapsed time: 00:09:12s. Time for last 1,000,000: 1s. Last read position: chr16:89,816,566
INFO 2026-06-03 20:02:43 SinglePassSamProgram Processed 430,000,000 records. Elapsed time: 00:09:13s. Time for last 1,000,000: 1s. Last read position: chr17:1,400,082
INFO 2026-06-03 20:02:45 SinglePassSamProgram Processed 431,000,000 records. Elapsed time: 00:09:15s. Time for last 1,000,000: 1s. Last read position: chr17:2,667,012
INFO 2026-06-03 20:02:46 SinglePassSamProgram Processed 432,000,000 records. Elapsed time: 00:09:16s. Time for last 1,000,000: 1s. Last read position: chr17:4,715,019
INFO 2026-06-03 20:02:47 SinglePassSamProgram Processed 433,000,000 records. Elapsed time: 00:09:17s. Time for last 1,000,000: 1s. Last read position: chr17:5,559,644
INFO 2026-06-03 20:02:48 SinglePassSamProgram Processed 434,000,000 records. Elapsed time: 00:09:19s. Time for last 1,000,000: 1s. Last read position: chr17:7,439,781
INFO 2026-06-03 20:02:50 SinglePassSamProgram Processed 435,000,000 records. Elapsed time: 00:09:20s. Time for last 1,000,000: 1s. Last read position: chr17:7,742,928
INFO 2026-06-03 20:02:51 SinglePassSamProgram Processed 436,000,000 records. Elapsed time: 00:09:21s. Time for last 1,000,000: 1s. Last read position: chr17:8,880,667
INFO 2026-06-03 20:02:52 SinglePassSamProgram Processed 437,000,000 records. Elapsed time: 00:09:22s. Time for last 1,000,000: 1s. Last read position: chr17:17,143,657
INFO 2026-06-03 20:02:54 SinglePassSamProgram Processed 438,000,000 records. Elapsed time: 00:09:24s. Time for last 1,000,000: 1s. Last read position: chr17:18,977,736
INFO 2026-06-03 20:02:55 SinglePassSamProgram Processed 439,000,000 records. Elapsed time: 00:09:25s. Time for last 1,000,000: 1s. Last read position: chr17:28,620,509
INFO 2026-06-03 20:02:56 SinglePassSamProgram Processed 440,000,000 records. Elapsed time: 00:09:26s. Time for last 1,000,000: 1s. Last read position: chr17:29,702,996
INFO 2026-06-03 20:02:57 SinglePassSamProgram Processed 441,000,000 records. Elapsed time: 00:09:28s. Time for last 1,000,000: 1s. Last read position: chr17:35,137,083
INFO 2026-06-03 20:02:59 SinglePassSamProgram Processed 442,000,000 records. Elapsed time: 00:09:29s. Time for last 1,000,000: 1s. Last read position: chr17:37,744,754
INFO 2026-06-03 20:03:00 SinglePassSamProgram Processed 443,000,000 records. Elapsed time: 00:09:30s. Time for last 1,000,000: 1s. Last read position: chr17:39,409,810
INFO 2026-06-03 20:03:01 SinglePassSamProgram Processed 444,000,000 records. Elapsed time: 00:09:31s. Time for last 1,000,000: 1s. Last read position: chr17:40,129,387
INFO 2026-06-03 20:03:03 SinglePassSamProgram Processed 445,000,000 records. Elapsed time: 00:09:33s. Time for last 1,000,000: 1s. Last read position: chr17:41,813,047
INFO 2026-06-03 20:03:04 SinglePassSamProgram Processed 446,000,000 records. Elapsed time: 00:09:35s. Time for last 1,000,000: 1s. Last read position: chr17:42,718,464
INFO 2026-06-03 20:03:06 SinglePassSamProgram Processed 447,000,000 records. Elapsed time: 00:09:36s. Time for last 1,000,000: 1s. Last read position: chr17:44,323,481
INFO 2026-06-03 20:03:07 SinglePassSamProgram Processed 448,000,000 records. Elapsed time: 00:09:37s. Time for last 1,000,000: 1s. Last read position: chr17:45,608,778
INFO 2026-06-03 20:03:09 SinglePassSamProgram Processed 449,000,000 records. Elapsed time: 00:09:39s. Time for last 1,000,000: 1s. Last read position: chr17:47,976,771
INFO 2026-06-03 20:03:10 SinglePassSamProgram Processed 450,000,000 records. Elapsed time: 00:09:40s. Time for last 1,000,000: 1s. Last read position: chr17:50,185,807
INFO 2026-06-03 20:03:12 SinglePassSamProgram Processed 451,000,000 records. Elapsed time: 00:09:42s. Time for last 1,000,000: 1s. Last read position: chr17:50,187,522
INFO 2026-06-03 20:03:13 SinglePassSamProgram Processed 452,000,000 records. Elapsed time: 00:09:43s. Time for last 1,000,000: 1s. Last read position: chr17:50,188,910
INFO 2026-06-03 20:03:14 SinglePassSamProgram Processed 453,000,000 records. Elapsed time: 00:09:45s. Time for last 1,000,000: 1s. Last read position: chr17:50,189,717
INFO 2026-06-03 20:03:16 SinglePassSamProgram Processed 454,000,000 records. Elapsed time: 00:09:46s. Time for last 1,000,000: 1s. Last read position: chr17:50,190,886
INFO 2026-06-03 20:03:17 SinglePassSamProgram Processed 455,000,000 records. Elapsed time: 00:09:47s. Time for last 1,000,000: 1s. Last read position: chr17:50,192,796
INFO 2026-06-03 20:03:19 SinglePassSamProgram Processed 456,000,000 records. Elapsed time: 00:09:49s. Time for last 1,000,000: 1s. Last read position: chr17:50,194,396
INFO 2026-06-03 20:03:20 SinglePassSamProgram Processed 457,000,000 records. Elapsed time: 00:09:50s. Time for last 1,000,000: 1s. Last read position: chr17:50,195,570
INFO 2026-06-03 20:03:21 SinglePassSamProgram Processed 458,000,000 records. Elapsed time: 00:09:52s. Time for last 1,000,000: 1s. Last read position: chr17:50,196,512
INFO 2026-06-03 20:03:23 SinglePassSamProgram Processed 459,000,000 records. Elapsed time: 00:09:53s. Time for last 1,000,000: 1s. Last read position: chr17:50,198,438
INFO 2026-06-03 20:03:24 SinglePassSamProgram Processed 460,000,000 records. Elapsed time: 00:09:54s. Time for last 1,000,000: 1s. Last read position: chr17:50,355,884
INFO 2026-06-03 20:03:25 SinglePassSamProgram Processed 461,000,000 records. Elapsed time: 00:09:56s. Time for last 1,000,000: 1s. Last read position: chr17:57,106,376
INFO 2026-06-03 20:03:27 SinglePassSamProgram Processed 462,000,000 records. Elapsed time: 00:09:57s. Time for last 1,000,000: 1s. Last read position: chr17:59,682,392
INFO 2026-06-03 20:03:28 SinglePassSamProgram Processed 463,000,000 records. Elapsed time: 00:09:58s. Time for last 1,000,000: 1s. Last read position: chr17:63,632,732
INFO 2026-06-03 20:03:30 SinglePassSamProgram Processed 464,000,000 records. Elapsed time: 00:10:00s. Time for last 1,000,000: 1s. Last read position: chr17:67,109,650
INFO 2026-06-03 20:03:31 SinglePassSamProgram Processed 465,000,000 records. Elapsed time: 00:10:01s. Time for last 1,000,000: 1s. Last read position: chr17:73,227,177
INFO 2026-06-03 20:03:32 SinglePassSamProgram Processed 466,000,000 records. Elapsed time: 00:10:02s. Time for last 1,000,000: 1s. Last read position: chr17:75,570,130
INFO 2026-06-03 20:03:33 SinglePassSamProgram Processed 467,000,000 records. Elapsed time: 00:10:04s. Time for last 1,000,000: 1s. Last read position: chr17:75,830,464
INFO 2026-06-03 20:03:35 SinglePassSamProgram Processed 468,000,000 records. Elapsed time: 00:10:05s. Time for last 1,000,000: 1s. Last read position: chr17:76,767,424
INFO 2026-06-03 20:03:36 SinglePassSamProgram Processed 469,000,000 records. Elapsed time: 00:10:06s. Time for last 1,000,000: 1s. Last read position: chr17:78,974,718
INFO 2026-06-03 20:03:37 SinglePassSamProgram Processed 470,000,000 records. Elapsed time: 00:10:07s. Time for last 1,000,000: 1s. Last read position: chr17:80,373,099
INFO 2026-06-03 20:03:39 SinglePassSamProgram Processed 471,000,000 records. Elapsed time: 00:10:09s. Time for last 1,000,000: 1s. Last read position: chr17:81,843,870
INFO 2026-06-03 20:03:40 SinglePassSamProgram Processed 472,000,000 records. Elapsed time: 00:10:10s. Time for last 1,000,000: 1s. Last read position: chr17:82,085,689
INFO 2026-06-03 20:03:41 SinglePassSamProgram Processed 473,000,000 records. Elapsed time: 00:10:11s. Time for last 1,000,000: 1s. Last read position: chr18:2,656,199
INFO 2026-06-03 20:03:43 SinglePassSamProgram Processed 474,000,000 records. Elapsed time: 00:10:13s. Time for last 1,000,000: 1s. Last read position: chr18:12,329,751
INFO 2026-06-03 20:03:44 SinglePassSamProgram Processed 475,000,000 records. Elapsed time: 00:10:14s. Time for last 1,000,000: 1s. Last read position: chr18:31,524,860
INFO 2026-06-03 20:03:45 SinglePassSamProgram Processed 476,000,000 records. Elapsed time: 00:10:15s. Time for last 1,000,000: 1s. Last read position: chr18:49,489,361
INFO 2026-06-03 20:03:47 SinglePassSamProgram Processed 477,000,000 records. Elapsed time: 00:10:17s. Time for last 1,000,000: 1s. Last read position: chr18:59,354,541
INFO 2026-06-03 20:03:48 SinglePassSamProgram Processed 478,000,000 records. Elapsed time: 00:10:18s. Time for last 1,000,000: 1s. Last read position: chr18:79,988,238
INFO 2026-06-03 20:03:49 SinglePassSamProgram Processed 479,000,000 records. Elapsed time: 00:10:19s. Time for last 1,000,000: 1s. Last read position: chr19:932,647
INFO 2026-06-03 20:03:51 SinglePassSamProgram Processed 480,000,000 records. Elapsed time: 00:10:21s. Time for last 1,000,000: 1s. Last read position: chr19:1,299,958
INFO 2026-06-03 20:03:52 SinglePassSamProgram Processed 481,000,000 records. Elapsed time: 00:10:22s. Time for last 1,000,000: 1s. Last read position: chr19:2,046,367
INFO 2026-06-03 20:03:53 SinglePassSamProgram Processed 482,000,000 records. Elapsed time: 00:10:23s. Time for last 1,000,000: 1s. Last read position: chr19:3,178,978
INFO 2026-06-03 20:03:55 SinglePassSamProgram Processed 483,000,000 records. Elapsed time: 00:10:25s. Time for last 1,000,000: 1s. Last read position: chr19:4,433,427
INFO 2026-06-03 20:03:56 SinglePassSamProgram Processed 484,000,000 records. Elapsed time: 00:10:26s. Time for last 1,000,000: 1s. Last read position: chr19:5,785,430
INFO 2026-06-03 20:03:58 SinglePassSamProgram Processed 485,000,000 records. Elapsed time: 00:10:28s. Time for last 1,000,000: 1s. Last read position: chr19:6,903,859
INFO 2026-06-03 20:03:59 SinglePassSamProgram Processed 486,000,000 records. Elapsed time: 00:10:29s. Time for last 1,000,000: 1s. Last read position: chr19:8,390,447
INFO 2026-06-03 20:04:00 SinglePassSamProgram Processed 487,000,000 records. Elapsed time: 00:10:30s. Time for last 1,000,000: 1s. Last read position: chr19:10,284,292
INFO 2026-06-03 20:04:01 SinglePassSamProgram Processed 488,000,000 records. Elapsed time: 00:10:31s. Time for last 1,000,000: 1s. Last read position: chr19:10,986,332
INFO 2026-06-03 20:04:03 SinglePassSamProgram Processed 489,000,000 records. Elapsed time: 00:10:33s. Time for last 1,000,000: 1s. Last read position: chr19:12,232,048
INFO 2026-06-03 20:04:04 SinglePassSamProgram Processed 490,000,000 records. Elapsed time: 00:10:34s. Time for last 1,000,000: 1s. Last read position: chr19:13,145,361
INFO 2026-06-03 20:04:05 SinglePassSamProgram Processed 491,000,000 records. Elapsed time: 00:10:35s. Time for last 1,000,000: 1s. Last read position: chr19:14,471,653
INFO 2026-06-03 20:04:06 SinglePassSamProgram Processed 492,000,000 records. Elapsed time: 00:10:36s. Time for last 1,000,000: 1s. Last read position: chr19:15,239,673
INFO 2026-06-03 20:04:08 SinglePassSamProgram Processed 493,000,000 records. Elapsed time: 00:10:38s. Time for last 1,000,000: 1s. Last read position: chr19:16,324,968
INFO 2026-06-03 20:04:09 SinglePassSamProgram Processed 494,000,000 records. Elapsed time: 00:10:39s. Time for last 1,000,000: 1s. Last read position: chr19:17,721,004
INFO 2026-06-03 20:04:10 SinglePassSamProgram Processed 495,000,000 records. Elapsed time: 00:10:40s. Time for last 1,000,000: 1s. Last read position: chr19:18,432,037
INFO 2026-06-03 20:04:12 SinglePassSamProgram Processed 496,000,000 records. Elapsed time: 00:10:42s. Time for last 1,000,000: 1s. Last read position: chr19:19,626,862
INFO 2026-06-03 20:04:13 SinglePassSamProgram Processed 497,000,000 records. Elapsed time: 00:10:43s. Time for last 1,000,000: 1s. Last read position: chr19:34,466,979
INFO 2026-06-03 20:04:14 SinglePassSamProgram Processed 498,000,000 records. Elapsed time: 00:10:44s. Time for last 1,000,000: 1s. Last read position: chr19:35,721,567
INFO 2026-06-03 20:04:16 SinglePassSamProgram Processed 499,000,000 records. Elapsed time: 00:10:46s. Time for last 1,000,000: 1s. Last read position: chr19:38,376,395
INFO 2026-06-03 20:04:17 SinglePassSamProgram Processed 500,000,000 records. Elapsed time: 00:10:47s. Time for last 1,000,000: 1s. Last read position: chr19:39,381,002
INFO 2026-06-03 20:04:19 SinglePassSamProgram Processed 501,000,000 records. Elapsed time: 00:10:49s. Time for last 1,000,000: 1s. Last read position: chr19:39,870,404
INFO 2026-06-03 20:04:20 SinglePassSamProgram Processed 502,000,000 records. Elapsed time: 00:10:50s. Time for last 1,000,000: 1s. Last read position: chr19:39,892,074
INFO 2026-06-03 20:04:22 SinglePassSamProgram Processed 503,000,000 records. Elapsed time: 00:10:52s. Time for last 1,000,000: 1s. Last read position: chr19:39,943,380
INFO 2026-06-03 20:04:23 SinglePassSamProgram Processed 504,000,000 records. Elapsed time: 00:10:53s. Time for last 1,000,000: 1s. Last read position: chr19:41,264,618
INFO 2026-06-03 20:04:24 SinglePassSamProgram Processed 505,000,000 records. Elapsed time: 00:10:54s. Time for last 1,000,000: 1s. Last read position: chr19:41,717,546
INFO 2026-06-03 20:04:26 SinglePassSamProgram Processed 506,000,000 records. Elapsed time: 00:10:56s. Time for last 1,000,000: 1s. Last read position: chr19:42,199,558
INFO 2026-06-03 20:04:27 SinglePassSamProgram Processed 507,000,000 records. Elapsed time: 00:10:57s. Time for last 1,000,000: 1s. Last read position: chr19:42,512,369
INFO 2026-06-03 20:04:28 SinglePassSamProgram Processed 508,000,000 records. Elapsed time: 00:10:59s. Time for last 1,000,000: 1s. Last read position: chr19:44,948,465
INFO 2026-06-03 20:04:30 SinglePassSamProgram Processed 509,000,000 records. Elapsed time: 00:11:00s. Time for last 1,000,000: 1s. Last read position: chr19:45,821,083
INFO 2026-06-03 20:04:31 SinglePassSamProgram Processed 510,000,000 records. Elapsed time: 00:11:01s. Time for last 1,000,000: 1s. Last read position: chr19:47,417,346
INFO 2026-06-03 20:04:32 SinglePassSamProgram Processed 511,000,000 records. Elapsed time: 00:11:02s. Time for last 1,000,000: 1s. Last read position: chr19:48,845,388
INFO 2026-06-03 20:04:34 SinglePassSamProgram Processed 512,000,000 records. Elapsed time: 00:11:04s. Time for last 1,000,000: 1s. Last read position: chr19:49,497,570
INFO 2026-06-03 20:04:35 SinglePassSamProgram Processed 513,000,000 records. Elapsed time: 00:11:05s. Time for last 1,000,000: 1s. Last read position: chr19:49,881,394
INFO 2026-06-03 20:04:36 SinglePassSamProgram Processed 514,000,000 records. Elapsed time: 00:11:06s. Time for last 1,000,000: 1s. Last read position: chr19:51,746,876
INFO 2026-06-03 20:04:37 SinglePassSamProgram Processed 515,000,000 records. Elapsed time: 00:11:07s. Time for last 1,000,000: 1s. Last read position: chr19:54,171,874
INFO 2026-06-03 20:04:39 SinglePassSamProgram Processed 516,000,000 records. Elapsed time: 00:11:09s. Time for last 1,000,000: 1s. Last read position: chr19:54,595,803
INFO 2026-06-03 20:04:40 SinglePassSamProgram Processed 517,000,000 records. Elapsed time: 00:11:10s. Time for last 1,000,000: 1s. Last read position: chr19:55,659,270
INFO 2026-06-03 20:04:41 SinglePassSamProgram Processed 518,000,000 records. Elapsed time: 00:11:11s. Time for last 1,000,000: 1s. Last read position: chr19:58,394,524
INFO 2026-06-03 20:04:43 SinglePassSamProgram Processed 519,000,000 records. Elapsed time: 00:11:13s. Time for last 1,000,000: 1s. Last read position: chr20:2,658,704
INFO 2026-06-03 20:04:44 SinglePassSamProgram Processed 520,000,000 records. Elapsed time: 00:11:14s. Time for last 1,000,000: 1s. Last read position: chr20:6,006,442
INFO 2026-06-03 20:04:45 SinglePassSamProgram Processed 521,000,000 records. Elapsed time: 00:11:15s. Time for last 1,000,000: 1s. Last read position: chr20:18,524,647
INFO 2026-06-03 20:04:46 SinglePassSamProgram Processed 522,000,000 records. Elapsed time: 00:11:16s. Time for last 1,000,000: 1s. Last read position: chr20:25,526,451
INFO 2026-06-03 20:04:48 SinglePassSamProgram Processed 523,000,000 records. Elapsed time: 00:11:18s. Time for last 1,000,000: 1s. Last read position: chr20:34,741,308
INFO 2026-06-03 20:04:49 SinglePassSamProgram Processed 524,000,000 records. Elapsed time: 00:11:19s. Time for last 1,000,000: 1s. Last read position: chr20:36,688,768
INFO 2026-06-03 20:04:51 SinglePassSamProgram Processed 525,000,000 records. Elapsed time: 00:11:21s. Time for last 1,000,000: 1s. Last read position: chr20:44,202,960
INFO 2026-06-03 20:04:52 SinglePassSamProgram Processed 526,000,000 records. Elapsed time: 00:11:22s. Time for last 1,000,000: 1s. Last read position: chr20:46,063,362
INFO 2026-06-03 20:04:53 SinglePassSamProgram Processed 527,000,000 records. Elapsed time: 00:11:24s. Time for last 1,000,000: 1s. Last read position: chr20:50,691,195
INFO 2026-06-03 20:04:55 SinglePassSamProgram Processed 528,000,000 records. Elapsed time: 00:11:26s. Time for last 1,000,000: 1s. Last read position: chr20:58,990,941
INFO 2026-06-03 20:04:57 SinglePassSamProgram Processed 529,000,000 records. Elapsed time: 00:11:27s. Time for last 1,000,000: 1s. Last read position: chr20:62,813,503
INFO 2026-06-03 20:04:58 SinglePassSamProgram Processed 530,000,000 records. Elapsed time: 00:11:28s. Time for last 1,000,000: 1s. Last read position: chr20:63,882,676
INFO 2026-06-03 20:04:59 SinglePassSamProgram Processed 531,000,000 records. Elapsed time: 00:11:29s. Time for last 1,000,000: 1s. Last read position: chr21:8,216,919
INFO 2026-06-03 20:05:00 SinglePassSamProgram Processed 532,000,000 records. Elapsed time: 00:11:31s. Time for last 1,000,000: 1s. Last read position: chr21:8,397,750
INFO 2026-06-03 20:05:02 SinglePassSamProgram Processed 533,000,000 records. Elapsed time: 00:11:32s. Time for last 1,000,000: 1s. Last read position: chr21:8,442,248
INFO 2026-06-03 20:05:03 SinglePassSamProgram Processed 534,000,000 records. Elapsed time: 00:11:33s. Time for last 1,000,000: 1s. Last read position: chr21:25,975,180
INFO 2026-06-03 20:05:04 SinglePassSamProgram Processed 535,000,000 records. Elapsed time: 00:11:35s. Time for last 1,000,000: 1s. Last read position: chr21:33,552,069
INFO 2026-06-03 20:05:06 SinglePassSamProgram Processed 536,000,000 records. Elapsed time: 00:11:36s. Time for last 1,000,000: 1s. Last read position: chr21:38,818,622
INFO 2026-06-03 20:05:07 SinglePassSamProgram Processed 537,000,000 records. Elapsed time: 00:11:37s. Time for last 1,000,000: 1s. Last read position: chr21:42,366,411
INFO 2026-06-03 20:05:08 SinglePassSamProgram Processed 538,000,000 records. Elapsed time: 00:11:39s. Time for last 1,000,000: 1s. Last read position: chr21:45,456,044
INFO 2026-06-03 20:05:10 SinglePassSamProgram Processed 539,000,000 records. Elapsed time: 00:11:40s. Time for last 1,000,000: 1s. Last read position: chr21:45,994,220
INFO 2026-06-03 20:05:11 SinglePassSamProgram Processed 540,000,000 records. Elapsed time: 00:11:41s. Time for last 1,000,000: 1s. Last read position: chr21:46,126,160
INFO 2026-06-03 20:05:12 SinglePassSamProgram Processed 541,000,000 records. Elapsed time: 00:11:42s. Time for last 1,000,000: 1s. Last read position: chr22:18,552,509
INFO 2026-06-03 20:05:14 SinglePassSamProgram Processed 542,000,000 records. Elapsed time: 00:11:44s. Time for last 1,000,000: 1s. Last read position: chr22:21,478,053
INFO 2026-06-03 20:05:15 SinglePassSamProgram Processed 543,000,000 records. Elapsed time: 00:11:45s. Time for last 1,000,000: 1s. Last read position: chr22:23,894,521
INFO 2026-06-03 20:05:17 SinglePassSamProgram Processed 544,000,000 records. Elapsed time: 00:11:47s. Time for last 1,000,000: 1s. Last read position: chr22:28,800,379
INFO 2026-06-03 20:05:18 SinglePassSamProgram Processed 545,000,000 records. Elapsed time: 00:11:48s. Time for last 1,000,000: 1s. Last read position: chr22:30,243,814
INFO 2026-06-03 20:05:20 SinglePassSamProgram Processed 546,000,000 records. Elapsed time: 00:11:50s. Time for last 1,000,000: 1s. Last read position: chr22:32,397,980
INFO 2026-06-03 20:05:22 SinglePassSamProgram Processed 547,000,000 records. Elapsed time: 00:11:52s. Time for last 1,000,000: 2s. Last read position: chr22:36,320,229
INFO 2026-06-03 20:05:23 SinglePassSamProgram Processed 548,000,000 records. Elapsed time: 00:11:53s. Time for last 1,000,000: 1s. Last read position: chr22:37,679,659
INFO 2026-06-03 20:05:24 SinglePassSamProgram Processed 549,000,000 records. Elapsed time: 00:11:54s. Time for last 1,000,000: 1s. Last read position: chr22:38,741,535
INFO 2026-06-03 20:05:26 SinglePassSamProgram Processed 550,000,000 records. Elapsed time: 00:11:56s. Time for last 1,000,000: 1s. Last read position: chr22:41,150,153
INFO 2026-06-03 20:05:27 SinglePassSamProgram Processed 551,000,000 records. Elapsed time: 00:11:57s. Time for last 1,000,000: 1s. Last read position: chr22:42,383,845
INFO 2026-06-03 20:05:29 SinglePassSamProgram Processed 552,000,000 records. Elapsed time: 00:11:59s. Time for last 1,000,000: 1s. Last read position: chr22:46,658,296
INFO 2026-06-03 20:05:30 SinglePassSamProgram Processed 553,000,000 records. Elapsed time: 00:12:00s. Time for last 1,000,000: 1s. Last read position: chr22:50,444,047
INFO 2026-06-03 20:05:31 SinglePassSamProgram Processed 554,000,000 records. Elapsed time: 00:12:01s. Time for last 1,000,000: 1s. Last read position: chrX:1,442,197
INFO 2026-06-03 20:05:32 SinglePassSamProgram Processed 555,000,000 records. Elapsed time: 00:12:02s. Time for last 1,000,000: 1s. Last read position: chrX:15,331,637
INFO 2026-06-03 20:05:34 SinglePassSamProgram Processed 556,000,000 records. Elapsed time: 00:12:04s. Time for last 1,000,000: 1s. Last read position: chrX:32,389,581
INFO 2026-06-03 20:05:35 SinglePassSamProgram Processed 557,000,000 records. Elapsed time: 00:12:05s. Time for last 1,000,000: 1s. Last read position: chrX:44,450,907
INFO 2026-06-03 20:05:36 SinglePassSamProgram Processed 558,000,000 records. Elapsed time: 00:12:06s. Time for last 1,000,000: 1s. Last read position: chrX:48,691,079
INFO 2026-06-03 20:05:37 SinglePassSamProgram Processed 559,000,000 records. Elapsed time: 00:12:08s. Time for last 1,000,000: 1s. Last read position: chrX:53,279,703
INFO 2026-06-03 20:05:39 SinglePassSamProgram Processed 560,000,000 records. Elapsed time: 00:12:09s. Time for last 1,000,000: 1s. Last read position: chrX:66,200,680
INFO 2026-06-03 20:05:40 SinglePassSamProgram Processed 561,000,000 records. Elapsed time: 00:12:10s. Time for last 1,000,000: 1s. Last read position: chrX:72,272,678
INFO 2026-06-03 20:05:41 SinglePassSamProgram Processed 562,000,000 records. Elapsed time: 00:12:11s. Time for last 1,000,000: 1s. Last read position: chrX:101,035,617
INFO 2026-06-03 20:05:43 SinglePassSamProgram Processed 563,000,000 records. Elapsed time: 00:12:13s. Time for last 1,000,000: 1s. Last read position: chrX:120,436,050
INFO 2026-06-03 20:05:44 SinglePassSamProgram Processed 564,000,000 records. Elapsed time: 00:12:14s. Time for last 1,000,000: 1s. Last read position: chrX:149,482,781
INFO 2026-06-03 20:05:45 SinglePassSamProgram Processed 565,000,000 records. Elapsed time: 00:12:16s. Time for last 1,000,000: 1s. Last read position: chrX:154,348,809
INFO 2026-06-03 20:05:47 SinglePassSamProgram Processed 566,000,000 records. Elapsed time: 00:12:17s. Time for last 1,000,000: 1s. Last read position: chrX:154,467,361
INFO 2026-06-03 20:05:48 SinglePassSamProgram Processed 567,000,000 records. Elapsed time: 00:12:18s. Time for last 1,000,000: 1s. Last read position: GL000220.1:114,150
INFO 2026-06-03 20:05:49 SinglePassSamProgram Processed 568,000,000 records. Elapsed time: 00:12:19s. Time for last 1,000,000: 1s. Last read position: GL000220.1:158,124
INFO 2026-06-03 20:05:51 SinglePassSamProgram Processed 569,000,000 records. Elapsed time: 00:12:21s. Time for last 1,000,000: 1s. Last read position: KI270733.1:130,818
INFO 2026-06-03 20:05:52 SinglePassSamProgram Processed 570,000,000 records. Elapsed time: 00:12:22s. Time for last 1,000,000: 1s. Last read position: KI270733.1:176,048
INFO 2026-06-03 20:05:53 RExecutor Executing R script via command: Rscript /tmp/script413330581245523402.R /tmp/nxf.XXXXnab4cl/aih-tih-sc-318819-R1_A23YTGFLT4_1_collectinsertsize.txt /tmp/nxf.XXXXnab4cl/aih-tih-sc-318819-R1_A23YTGFLT4_1_collectinsertsize.pdf aih-tih-sc-318819-R1_A23YTGFLT4_1.Aligned.sortedByCoord.out.bam
ERROR 2026-06-03 20:05:53 ProcessExecutor /bin/sh: warning: setlocale: LC_ALL: cannot change locale (en_US.UTF-8)
ERROR 2026-06-03 20:05:53 ProcessExecutor sh: warning: setlocale: LC_ALL: cannot change locale (en_US.UTF-8)
ERROR 2026-06-03 20:05:53 ProcessExecutor sh: warning: setlocale: LC_ALL: cannot change locale (en_US.UTF-8)
ERROR 2026-06-03 20:05:54 ProcessExecutor During startup - Warning messages:
ERROR 2026-06-03 20:05:54 ProcessExecutor 1: Setting LC_CTYPE failed, using "C"
ERROR 2026-06-03 20:05:54 ProcessExecutor 2: Setting LC_COLLATE failed, using "C"
ERROR 2026-06-03 20:05:54 ProcessExecutor 3: Setting LC_TIME failed, using "C"
ERROR 2026-06-03 20:05:54 ProcessExecutor 4: Setting LC_MESSAGES failed, using "C"
ERROR 2026-06-03 20:05:54 ProcessExecutor 5: Setting LC_MONETARY failed, using "C"
ERROR 2026-06-03 20:05:54 ProcessExecutor 6: Setting LC_PAPER failed, using "C"
ERROR 2026-06-03 20:05:54 ProcessExecutor 7: Setting LC_MEASUREMENT failed, using "C"
INFO 2026-06-03 20:05:54 ProcessExecutor null device
INFO 2026-06-03 20:05:54 ProcessExecutor 1
ERROR 2026-06-03 20:05:54 ProcessExecutor sh: warning: setlocale: LC_ALL: cannot change locale (en_US.UTF-8)
[Wed Jun 03 20:05:54 GMT 2026] picard.analysis.CollectInsertSizeMetrics done. Elapsed time: 12.41 minutes.
Runtime.totalMemory()=180355072