Done.
-parsing GTF file: /tmp/nxf.XcfmkvrFWR/aih-tih-sc-2e5fe9-R1_A23YTGFLT4_1.gtf
* Running CMD: /usr/local/bin/STAR --runThreadN 8 --genomeDir /tmp/nxf.XcfmkvrFWR/ctat_genome_lib_build_dir/ref_genome.fa.star.idx --outSAMtype BAM SortedByCoordinate --twopassMode None --alignSJDBoverhangMin 10 --genomeSuffixLengthMax 10000 --limitBAMsortRAM 47271261705 --alignInsertionFlush Right --alignMatesGapMax 100000 --alignIntronMax 100000 --outSAMattributes All --readFilesIn /tmp/nxf.XcfmkvrFWR/aih-tih-sc-2e5fe9-R1_A23YTGFLT4_1_1.fastp.fastq.gz /tmp/nxf.XcfmkvrFWR/aih-tih-sc-2e5fe9-R1_A23YTGFLT4_1_2.fastp.fastq.gz --genomeFastaFiles /tmp/nxf.XcfmkvrFWR/fi_workdir/aih-tih-sc-2e5fe9-R1_A23YTGFLT4_1.fa --outSAMfilter KeepAllAddedReferences --sjdbGTFfile /tmp/nxf.XcfmkvrFWR/fi_workdir/aih-tih-sc-2e5fe9-R1_A23YTGFLT4_1.gtf --alignSJstitchMismatchNmax 5 -1 5 5 --scoreGapNoncan -6 --readFilesCommand 'gunzip -c'
* Running CMD: mv Aligned.sortedByCoord.out.bam aih-tih-sc-2e5fe9-R1_A23YTGFLT4_1.star.sortedByCoord.out.bam
* Running CMD: samtools index aih-tih-sc-2e5fe9-R1_A23YTGFLT4_1.star.sortedByCoord.out.bam
22:56:13 : INFO : Done.
-parsing GTF file: /tmp/nxf.XcfmkvrFWR/fi_workdir/aih-tih-sc-2e5fe9-R1_A23YTGFLT4_1.gtf
-parsing /tmp/nxf.XcfmkvrFWR/fi_workdir/aih-tih-sc-2e5fe9-R1_A23YTGFLT4_1.star.cSorted.dupsMarked.bam
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[950000] -done parsing /tmp/nxf.XcfmkvrFWR/fi_workdir/aih-tih-sc-2e5fe9-R1_A23YTGFLT4_1.star.cSorted.dupsMarked.bam. Extracting junction info.
junction read elimination tally: $VAR1 = {
'num_hits: 5 != num_counted_on_fusion_contigs 3 ' => 3,
'per_id < 96' => 3438,
'num genes matched < 2' => 20,
'num_hits: 5 != num_counted_on_fusion_contigs 4 ' => 20,
'small anchor length' => 28,
'num_hits: 6 != num_counted_on_fusion_contigs 2 ' => 4,
' ** passed ** ' => 2710,
'num_hits: 5 != num_counted_on_fusion_contigs 1 ' => 1,
'num_hits: 3 != num_counted_on_fusion_contigs 1 ' => 246,
'num_hits: 4 != num_counted_on_fusion_contigs 2 ' => 20,
'exons hit < 2' => 1,
'num_hits: 4 != num_counted_on_fusion_contigs 3 ' => 12,
'low complexity anchor region' => 4,
'num_hits: 2 != num_counted_on_fusion_contigs 1 ' => 150,
'num_hits: 3 != num_counted_on_fusion_contigs 2 ' => 54,
'excessive soft clipping' => 5466,
'num_hits: 8 != num_counted_on_fusion_contigs 4 ' => 8
};
-writing fusion junction support info.
-outputting the spanning read info: /tmp/nxf.XcfmkvrFWR/fi_workdir/aih-tih-sc-2e5fe9-R1_A23YTGFLT4_1.star.cSorted.dupsMarked.bam.fusion_spanning_info.
- counting read alignments among fusion contigs.
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[11000] -fusion SPANNING read extraction for scaff: FBXO25--AC240565.1
-fusion SPANNING read extraction for scaff: GUCY1B2--NKAIN2
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[20000] -fusion SPANNING read extraction for scaff: LRCH1--GRID1
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[34000] -fusion SPANNING read extraction for scaff: PRSS27--TPSB2
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[65000] -fusion SPANNING read extraction for scaff: SELENOO--TUBGCP6
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[54000] -fusion SPANNING read extraction for scaff: STX16--NPEPL1
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[94000] -fusion SPANNING read extraction for scaff: SVEP1--MYLK
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[37000] -fusion SPANNING read extraction for scaff: TLK2--FAM157A
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[5000] -fusion SPANNING read extraction for scaff: TLK2P1--AC110079.1
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[32000] -fusion SPANNING read extraction for scaff: TVP23C--CDRT4
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[18000] -fusion SPANNING read extraction for scaff: UBE2Q2P1--GOLGA6L10
-filtered reads reasons: $VAR1 = {
'lacks exon overlap' => 6887
};
EM: Starting log likelihood: -4456.448106
EM: Round [1] log likelihood: -4448.303876
EM: Round [2] log likelihood: -4447.060826
EM: Round [3] log likelihood: -4446.799529
EM: Round [4] log likelihood: -4446.696716
EM: Round [5] log likelihood: -4446.640472
EM: Round [6] log likelihood: -4446.606416
EM: Round [7] log likelihood: -4446.584338
EM: Round [8] log likelihood: -4446.568896
EM: Round [9] log likelihood: -4446.557175
EM: Round [10] log likelihood: -4446.547563
EM: Round [11] log likelihood: -4446.539169
EM: Round [12] log likelihood: -4446.531497
EM: Round [13] log likelihood: -4446.524272
EM: Round [14] log likelihood: -4446.517339
EM: Round [15] log likelihood: -4446.510611
EM: Round [16] log likelihood: -4446.504041
EM: Round [17] log likelihood: -4446.497598
EM: Round [18] log likelihood: -4446.491268
EM: Round [19] log likelihood: -4446.485040
EM: Round [20] log likelihood: -4446.478908
EM: Round [21] log likelihood: -4446.472867
EM: Round [22] log likelihood: -4446.466915
EM: Round [23] log likelihood: -4446.461048
EM: Round [24] log likelihood: -4446.455264
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EM: Round [27] log likelihood: -4446.438398
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EM: Round [31] log likelihood: -4446.416978
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EM: Round [38] log likelihood: -4446.382183
EM: Round [39] log likelihood: -4446.377472
EM: Round [40] log likelihood: -4446.372822
EM: Round [41] log likelihood: -4446.368233
EM: Round [42] log likelihood: -4446.363702
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EM: Round [48] log likelihood: -4446.337710
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EM: Round [444] log likelihood: -4445.948006
EM: Round [445] log likelihood: -4445.947906
EM: Stopping iterations at round 445 due to insufficient improvement in likelihood.
[bam_sort_core] merging from 0 files and 8 in-memory blocks...
-extracting read coordinates from /tmp/nxf.XcfmkvrFWR/aih-tih-sc-2e5fe9-R1_A23YTGFLT4_1.consolidated.bam into /tmp/nxf.XcfmkvrFWR/aih-tih-sc-2e5fe9-R1_A23YTGFLT4_1.consolidated.bam.read_coords
CMD: touch /tmp/nxf.XcfmkvrFWR/aih-tih-sc-2e5fe9-R1_A23YTGFLT4_1.consolidated.bam.read_coords.ok
CMD: /usr/bin/sort --parallel=1 -S10G -T . -k1,1 -k2,2 -k4,4n /tmp/nxf.XcfmkvrFWR/aih-tih-sc-2e5fe9-R1_A23YTGFLT4_1.consolidated.bam.read_coords > /tmp/nxf.XcfmkvrFWR/aih-tih-sc-2e5fe9-R1_A23YTGFLT4_1.consolidated.bam.read_coords.sort_by_readname
CMD: /usr/bin/sort --parallel=1 -S10G -T . -k1,1 -k3,3n /tmp/nxf.XcfmkvrFWR/aih-tih-sc-2e5fe9-R1_A23YTGFLT4_1.consolidated.bam.frag_coords > /tmp/nxf.XcfmkvrFWR/aih-tih-sc-2e5fe9-R1_A23YTGFLT4_1.consolidated.bam.frag_coords.coord_sorted
CMD: /usr/local/src/STAR-Fusion/FusionInspector/FusionFilter/util/blast_filter.pl --fusion_preds /tmp/nxf.XcfmkvrFWR/fi_workdir/aih-tih-sc-2e5fe9-R1_A23YTGFLT4_1.fusion_preds.coalesced.summary.EMadj.min_frag_thresh.wSpliceInfo --genome_lib_dir ctat_genome_lib_build_dir
CMD: /usr/local/src/STAR-Fusion/FusionInspector/FusionFilter/util/promiscuity_filter.pl --fusion_preds /tmp/nxf.XcfmkvrFWR/fi_workdir/aih-tih-sc-2e5fe9-R1_A23YTGFLT4_1.fusion_preds.coalesced.summary.EMadj.min_frag_thresh.wSpliceInfo.post_blast_filter --genome_lib_dir ctat_genome_lib_build_dir --max_promiscuity 10 --min_pct_dom_promiscuity 50
CMD: cp /tmp/nxf.XcfmkvrFWR/fi_workdir/aih-tih-sc-2e5fe9-R1_A23YTGFLT4_1.fusion_preds.coalesced.summary.EMadj.min_frag_thresh.wSpliceInfo.post_blast_filter.post_promisc_filter /tmp/nxf.XcfmkvrFWR/aih-tih-sc-2e5fe9-R1_A23YTGFLT4_1.post_blast_and_promiscuity_filter
-done, see /tmp/nxf.XcfmkvrFWR/aih-tih-sc-2e5fe9-R1_A23YTGFLT4_1.post_blast_and_promiscuity_filter.annot_filter.pass
EM: Starting log likelihood: -4273.162346
EM: Round [1] log likelihood: -4266.248751
EM: Round [2] log likelihood: -4265.318131
EM: Round [3] log likelihood: -4265.220162
EM: Round [4] log likelihood: -4265.205285
EM: Round [5] log likelihood: -4265.197072
EM: Round [6] log likelihood: -4265.189453
EM: Round [7] log likelihood: -4265.181987
EM: Round [8] log likelihood: -4265.174640
EM: Round [9] log likelihood: -4265.167408
EM: Round [10] log likelihood: -4265.160289
EM: Round [11] log likelihood: -4265.153278
EM: Round [12] log likelihood: -4265.146375
EM: Round [13] log likelihood: -4265.139577
EM: Round [14] log likelihood: -4265.132881
EM: Round [15] log likelihood: -4265.126286
EM: Round [16] log likelihood: -4265.119788
EM: Round [17] log likelihood: -4265.113387
EM: Round [18] log likelihood: -4265.107079
EM: Round [19] log likelihood: -4265.100864
EM: Round [20] log likelihood: -4265.094738
EM: Round [21] log likelihood: -4265.088701
EM: Round [22] log likelihood: -4265.082751
EM: Round [23] log likelihood: -4265.076885
EM: Round [24] log likelihood: -4265.071103
EM: Round [25] log likelihood: -4265.065401
EM: Round [26] log likelihood: -4265.059780
EM: Round [27] log likelihood: -4265.054237
EM: Round [28] log likelihood: -4265.048770
EM: Round [29] log likelihood: -4265.043379
EM: Round [30] log likelihood: -4265.038062
EM: Round [31] log likelihood: -4265.032817
EM: Round [32] log likelihood: -4265.027643
EM: Round [33] log likelihood: -4265.022539
EM: Round [34] log likelihood: -4265.017504
EM: Round [35] log likelihood: -4265.012536
EM: Round [36] log likelihood: -4265.007634
EM: Round [37] log likelihood: -4265.002796
EM: Round [38] log likelihood: -4264.998022
EM: Round [39] log likelihood: -4264.993311
EM: Round [40] log likelihood: -4264.988661
EM: Round [41] log likelihood: -4264.984072
EM: Round [42] log likelihood: -4264.979541
EM: Round [43] log likelihood: -4264.975069
EM: Round [44] log likelihood: -4264.970655
EM: Round [45] log likelihood: -4264.966296
EM: Round [46] log likelihood: -4264.961993
EM: Round [47] log likelihood: -4264.957744
EM: Round [48] log likelihood: -4264.953549
EM: Round [49] log likelihood: -4264.949406
EM: Round [50] log likelihood: -4264.945315
EM: Round [51] log likelihood: -4264.941275
EM: Round [52] log likelihood: -4264.937284
EM: Round [53] log likelihood: -4264.933343
EM: Round [54] log likelihood: -4264.929450
EM: Round [55] log likelihood: -4264.925605
EM: Round [56] log likelihood: -4264.921807
EM: Round [57] log likelihood: -4264.918055
EM: Round [58] log likelihood: -4264.914348
EM: Round [59] log likelihood: -4264.910686
EM: Round [60] log likelihood: -4264.907068
EM: Round [61] log likelihood: -4264.903493
EM: Round [62] log likelihood: -4264.899961
EM: Round [63] log likelihood: -4264.896471
EM: Round [64] log likelihood: -4264.893022
EM: Round [65] log likelihood: -4264.889614
EM: Round [66] log likelihood: -4264.886245
EM: Round [67] log likelihood: -4264.882917
EM: Round [68] log likelihood: -4264.879627
EM: Round [69] log likelihood: -4264.876375
EM: Round [70] log likelihood: -4264.873162
EM: Round [71] log likelihood: -4264.869985
EM: Round [72] log likelihood: -4264.866845
EM: Round [73] log likelihood: -4264.863741
EM: Round [74] log likelihood: -4264.860673
EM: Round [75] log likelihood: -4264.857639
EM: Round [76] log likelihood: -4264.854641
EM: Round [77] log likelihood: -4264.851676
EM: Round [78] log likelihood: -4264.848745
EM: Round [79] log likelihood: -4264.845847
EM: Round [80] log likelihood: -4264.842982
EM: Round [81] log likelihood: -4264.840148
EM: Round [82] log likelihood: -4264.837347
EM: Round [83] log likelihood: -4264.834576
EM: Round [84] log likelihood: -4264.831837
EM: Round [85] log likelihood: -4264.829128
EM: Round [86] log likelihood: -4264.826449
EM: Round [87] log likelihood: -4264.823800
EM: Round [88] log likelihood: -4264.821179
EM: Round [89] log likelihood: -4264.818588
EM: Round [90] log likelihood: -4264.816025
EM: Round [91] log likelihood: -4264.813490
EM: Round [92] log likelihood: -4264.810982
EM: Round [93] log likelihood: -4264.808502
EM: Round [94] log likelihood: -4264.806049
EM: Round [95] log likelihood: -4264.803622
EM: Round [96] log likelihood: -4264.801221
EM: Round [97] log likelihood: -4264.798847
EM: Round [98] log likelihood: -4264.796498
EM: Round [99] log likelihood: -4264.794174
EM: Round [100] log likelihood: -4264.791874
EM: Round [101] log likelihood: -4264.789600
EM: Round [102] log likelihood: -4264.787349
EM: Round [103] log likelihood: -4264.785123
EM: Round [104] log likelihood: -4264.782920
EM: Round [105] log likelihood: -4264.780740
EM: Round [106] log likelihood: -4264.778584
EM: Round [107] log likelihood: -4264.776450
EM: Round [108] log likelihood: -4264.774338
EM: Round [109] log likelihood: -4264.772249
EM: Round [110] log likelihood: -4264.770181
EM: Round [111] log likelihood: -4264.768135
EM: Round [112] log likelihood: -4264.766111
EM: Round [113] log likelihood: -4264.764107
EM: Round [114] log likelihood: -4264.762125
EM: Round [115] log likelihood: -4264.760162
EM: Round [116] log likelihood: -4264.758220
EM: Round [117] log likelihood: -4264.756298
EM: Round [118] log likelihood: -4264.754396
EM: Round [119] log likelihood: -4264.752514
EM: Round [120] log likelihood: -4264.750651
EM: Round [121] log likelihood: -4264.748806
EM: Round [122] log likelihood: -4264.746981
EM: Round [123] log likelihood: -4264.745174
EM: Round [124] log likelihood: -4264.743386
EM: Round [125] log likelihood: -4264.741616
EM: Round [126] log likelihood: -4264.739864
EM: Round [127] log likelihood: -4264.738129
EM: Round [128] log likelihood: -4264.736413
EM: Round [129] log likelihood: -4264.734713
EM: Round [130] log likelihood: -4264.733031
EM: Round [131] log likelihood: -4264.731365
EM: Round [132] log likelihood: -4264.729716
EM: Round [133] log likelihood: -4264.728084
EM: Round [134] log likelihood: -4264.726468
EM: Round [135] log likelihood: -4264.724869
EM: Round [136] log likelihood: -4264.723285
EM: Round [137] log likelihood: -4264.721717
EM: Round [138] log likelihood: -4264.720164
EM: Round [139] log likelihood: -4264.718628
EM: Round [140] log likelihood: -4264.717106
EM: Round [141] log likelihood: -4264.715599
EM: Round [142] log likelihood: -4264.714107
EM: Round [143] log likelihood: -4264.712630
EM: Round [144] log likelihood: -4264.711168
EM: Round [145] log likelihood: -4264.709720
EM: Round [146] log likelihood: -4264.708286
EM: Round [147] log likelihood: -4264.706866
EM: Round [148] log likelihood: -4264.705461
EM: Round [149] log likelihood: -4264.704069
EM: Round [150] log likelihood: -4264.702690
EM: Round [151] log likelihood: -4264.701325
EM: Round [152] log likelihood: -4264.699973
EM: Round [153] log likelihood: -4264.698635
EM: Round [154] log likelihood: -4264.697309
EM: Round [155] log likelihood: -4264.695997
EM: Round [156] log likelihood: -4264.694697
EM: Round [157] log likelihood: -4264.693410
EM: Round [158] log likelihood: -4264.692135
EM: Round [159] log likelihood: -4264.690872
EM: Round [160] log likelihood: -4264.689622
EM: Round [161] log likelihood: -4264.688384
EM: Round [162] log likelihood: -4264.687157
EM: Round [163] log likelihood: -4264.685943
EM: Round [164] log likelihood: -4264.684740
EM: Round [165] log likelihood: -4264.683548
EM: Round [166] log likelihood: -4264.682368
EM: Round [167] log likelihood: -4264.681199
EM: Round [168] log likelihood: -4264.680042
EM: Round [169] log likelihood: -4264.678895
EM: Round [170] log likelihood: -4264.677760
EM: Round [171] log likelihood: -4264.676635
EM: Round [172] log likelihood: -4264.675521
EM: Round [173] log likelihood: -4264.674418
EM: Round [174] log likelihood: -4264.673325
EM: Round [175] log likelihood: -4264.672242
EM: Round [176] log likelihood: -4264.671170
EM: Round [177] log likelihood: -4264.670107
EM: Round [178] log likelihood: -4264.669055
EM: Round [179] log likelihood: -4264.668013
EM: Round [180] log likelihood: -4264.666981
EM: Round [181] log likelihood: -4264.665958
EM: Round [182] log likelihood: -4264.664945
EM: Round [183] log likelihood: -4264.663941
EM: Round [184] log likelihood: -4264.662947
EM: Round [185] log likelihood: -4264.661962
EM: Round [186] log likelihood: -4264.660987
EM: Round [187] log likelihood: -4264.660020
EM: Round [188] log likelihood: -4264.659063
EM: Round [189] log likelihood: -4264.658115
EM: Round [190] log likelihood: -4264.657175
EM: Round [191] log likelihood: -4264.656244
EM: Round [192] log likelihood: -4264.655322
EM: Round [193] log likelihood: -4264.654409
EM: Round [194] log likelihood: -4264.653504
EM: Round [195] log likelihood: -4264.652607
EM: Round [196] log likelihood: -4264.651719
EM: Round [197] log likelihood: -4264.650839
EM: Round [198] log likelihood: -4264.649967
EM: Round [199] log likelihood: -4264.649103
EM: Round [200] log likelihood: -4264.648247
EM: Round [201] log likelihood: -4264.647399
EM: Round [202] log likelihood: -4264.646559
EM: Round [203] log likelihood: -4264.645727
EM: Round [204] log likelihood: -4264.644902
EM: Round [205] log likelihood: -4264.644085
EM: Round [206] log likelihood: -4264.643276
EM: Round [207] log likelihood: -4264.642473
EM: Round [208] log likelihood: -4264.641679
EM: Round [209] log likelihood: -4264.640891
EM: Round [210] log likelihood: -4264.640111
EM: Round [211] log likelihood: -4264.639338
EM: Round [212] log likelihood: -4264.638572
EM: Round [213] log likelihood: -4264.637813
EM: Round [214] log likelihood: -4264.637061
EM: Round [215] log likelihood: -4264.636316
EM: Round [216] log likelihood: -4264.635578
EM: Round [217] log likelihood: -4264.634847
EM: Round [218] log likelihood: -4264.634122
EM: Round [219] log likelihood: -4264.633403
EM: Round [220] log likelihood: -4264.632692
EM: Round [221] log likelihood: -4264.631987
EM: Round [222] log likelihood: -4264.631288
EM: Round [223] log likelihood: -4264.630595
EM: Round [224] log likelihood: -4264.629909
EM: Round [225] log likelihood: -4264.629229
EM: Round [226] log likelihood: -4264.628555
EM: Round [227] log likelihood: -4264.627888
EM: Round [228] log likelihood: -4264.627226
EM: Round [229] log likelihood: -4264.626571
EM: Round [230] log likelihood: -4264.625921
EM: Round [231] log likelihood: -4264.625277
EM: Round [232] log likelihood: -4264.624639
EM: Round [233] log likelihood: -4264.624007
EM: Round [234] log likelihood: -4264.623380
EM: Round [235] log likelihood: -4264.622760
EM: Round [236] log likelihood: -4264.622144
EM: Round [237] log likelihood: -4264.621535
EM: Round [238] log likelihood: -4264.620930
EM: Round [239] log likelihood: -4264.620332
EM: Round [240] log likelihood: -4264.619738
EM: Round [241] log likelihood: -4264.619150
EM: Round [242] log likelihood: -4264.618567
EM: Round [243] log likelihood: -4264.617990
EM: Round [244] log likelihood: -4264.617417
EM: Round [245] log likelihood: -4264.616850
EM: Round [246] log likelihood: -4264.616288
EM: Round [247] log likelihood: -4264.615731
EM: Round [248] log likelihood: -4264.615179
EM: Round [249] log likelihood: -4264.614632
EM: Round [250] log likelihood: -4264.614089
EM: Round [251] log likelihood: -4264.613552
EM: Round [252] log likelihood: -4264.613019
EM: Round [253] log likelihood: -4264.612491
EM: Round [254] log likelihood: -4264.611968
EM: Round [255] log likelihood: -4264.611450
EM: Round [256] log likelihood: -4264.610936
EM: Round [257] log likelihood: -4264.610426
EM: Round [258] log likelihood: -4264.609922
EM: Round [259] log likelihood: -4264.609421
EM: Round [260] log likelihood: -4264.608926
EM: Round [261] log likelihood: -4264.608434
EM: Round [262] log likelihood: -4264.607947
EM: Round [263] log likelihood: -4264.607464
EM: Round [264] log likelihood: -4264.606986
EM: Round [265] log likelihood: -4264.606512
EM: Round [266] log likelihood: -4264.606042
EM: Round [267] log likelihood: -4264.605576
EM: Round [268] log likelihood: -4264.605114
EM: Round [269] log likelihood: -4264.604657
EM: Round [270] log likelihood: -4264.604203
EM: Round [271] log likelihood: -4264.603754
EM: Round [272] log likelihood: -4264.603308
EM: Round [273] log likelihood: -4264.602866
EM: Round [274] log likelihood: -4264.602429
EM: Round [275] log likelihood: -4264.601995
EM: Round [276] log likelihood: -4264.601565
EM: Round [277] log likelihood: -4264.601139
EM: Round [278] log likelihood: -4264.600716
EM: Round [279] log likelihood: -4264.600297
EM: Round [280] log likelihood: -4264.599882
EM: Round [281] log likelihood: -4264.599471
EM: Round [282] log likelihood: -4264.599063
EM: Round [283] log likelihood: -4264.598659
EM: Round [284] log likelihood: -4264.598259
EM: Round [285] log likelihood: -4264.597861
EM: Round [286] log likelihood: -4264.597468
EM: Round [287] log likelihood: -4264.597078
EM: Round [288] log likelihood: -4264.596691
EM: Round [289] log likelihood: -4264.596308
EM: Round [290] log likelihood: -4264.595928
EM: Round [291] log likelihood: -4264.595551
EM: Round [292] log likelihood: -4264.595178
EM: Round [293] log likelihood: -4264.594808
EM: Round [294] log likelihood: -4264.594441
EM: Round [295] log likelihood: -4264.594078
EM: Round [296] log likelihood: -4264.593717
EM: Round [297] log likelihood: -4264.593360
EM: Round [298] log likelihood: -4264.593006
EM: Round [299] log likelihood: -4264.592655
EM: Round [300] log likelihood: -4264.592307
EM: Round [301] log likelihood: -4264.591962
EM: Round [302] log likelihood: -4264.591620
EM: Round [303] log likelihood: -4264.591281
EM: Round [304] log likelihood: -4264.590945
EM: Round [305] log likelihood: -4264.590612
EM: Round [306] log likelihood: -4264.590282
EM: Round [307] log likelihood: -4264.589955
EM: Round [308] log likelihood: -4264.589631
EM: Round [309] log likelihood: -4264.589309
EM: Round [310] log likelihood: -4264.588991
EM: Round [311] log likelihood: -4264.588675
EM: Round [312] log likelihood: -4264.588362
EM: Round [313] log likelihood: -4264.588051
EM: Round [314] log likelihood: -4264.587743
EM: Round [315] log likelihood: -4264.587438
EM: Round [316] log likelihood: -4264.587136
EM: Round [317] log likelihood: -4264.586836
EM: Round [318] log likelihood: -4264.586539
EM: Round [319] log likelihood: -4264.586244
EM: Round [320] log likelihood: -4264.585952
EM: Round [321] log likelihood: -4264.585663
EM: Round [322] log likelihood: -4264.585376
EM: Round [323] log likelihood: -4264.585091
EM: Round [324] log likelihood: -4264.584809
EM: Round [325] log likelihood: -4264.584530
EM: Round [326] log likelihood: -4264.584253
EM: Round [327] log likelihood: -4264.583978
EM: Round [328] log likelihood: -4264.583706
EM: Round [329] log likelihood: -4264.583436
EM: Round [330] log likelihood: -4264.583168
EM: Round [331] log likelihood: -4264.582903
EM: Round [332] log likelihood: -4264.582640
EM: Round [333] log likelihood: -4264.582379
EM: Round [334] log likelihood: -4264.582120
EM: Round [335] log likelihood: -4264.581864
EM: Round [336] log likelihood: -4264.581610
EM: Round [337] log likelihood: -4264.581358
EM: Round [338] log likelihood: -4264.581109
EM: Round [339] log likelihood: -4264.580861
EM: Round [340] log likelihood: -4264.580616
EM: Round [341] log likelihood: -4264.580373
EM: Round [342] log likelihood: -4264.580132
EM: Round [343] log likelihood: -4264.579892
EM: Round [344] log likelihood: -4264.579656
EM: Round [345] log likelihood: -4264.579421
EM: Round [346] log likelihood: -4264.579188
EM: Round [347] log likelihood: -4264.578957
EM: Round [348] log likelihood: -4264.578728
EM: Round [349] log likelihood: -4264.578501
EM: Round [350] log likelihood: -4264.578276
EM: Round [351] log likelihood: -4264.578053
EM: Round [352] log likelihood: -4264.577832
EM: Round [353] log likelihood: -4264.577613
EM: Round [354] log likelihood: -4264.577395
EM: Round [355] log likelihood: -4264.577180
EM: Round [356] log likelihood: -4264.576966
EM: Round [357] log likelihood: -4264.576755
EM: Round [358] log likelihood: -4264.576545
EM: Round [359] log likelihood: -4264.576337
EM: Round [360] log likelihood: -4264.576130
EM: Round [361] log likelihood: -4264.575926
EM: Round [362] log likelihood: -4264.575723
EM: Round [363] log likelihood: -4264.575522
EM: Round [364] log likelihood: -4264.575323
EM: Round [365] log likelihood: -4264.575125
EM: Round [366] log likelihood: -4264.574929
EM: Round [367] log likelihood: -4264.574735
EM: Round [368] log likelihood: -4264.574542
EM: Round [369] log likelihood: -4264.574352
EM: Round [370] log likelihood: -4264.574162
EM: Round [371] log likelihood: -4264.573975
EM: Round [372] log likelihood: -4264.573789
EM: Round [373] log likelihood: -4264.573604
EM: Round [374] log likelihood: -4264.573421
EM: Round [375] log likelihood: -4264.573240
EM: Round [376] log likelihood: -4264.573060
EM: Round [377] log likelihood: -4264.572882
EM: Round [378] log likelihood: -4264.572706
EM: Round [379] log likelihood: -4264.572531
EM: Round [380] log likelihood: -4264.572357
EM: Round [381] log likelihood: -4264.572185
EM: Round [382] log likelihood: -4264.572014
EM: Round [383] log likelihood: -4264.571845
EM: Round [384] log likelihood: -4264.571677
EM: Round [385] log likelihood: -4264.571511
EM: Round [386] log likelihood: -4264.571346
EM: Round [387] log likelihood: -4264.571183
EM: Round [388] log likelihood: -4264.571021
EM: Round [389] log likelihood: -4264.570860
EM: Round [390] log likelihood: -4264.570701
EM: Round [391] log likelihood: -4264.570543
EM: Round [392] log likelihood: -4264.570386
EM: Round [393] log likelihood: -4264.570231
EM: Round [394] log likelihood: -4264.570077
EM: Round [395] log likelihood: -4264.569924
EM: Round [396] log likelihood: -4264.569773
EM: Round [397] log likelihood: -4264.569623
EM: Round [398] log likelihood: -4264.569474
EM: Round [399] log likelihood: -4264.569327
EM: Round [400] log likelihood: -4264.569181
EM: Round [401] log likelihood: -4264.569036
EM: Round [402] log likelihood: -4264.568892
EM: Round [403] log likelihood: -4264.568750
EM: Round [404] log likelihood: -4264.568608
EM: Round [405] log likelihood: -4264.568468
EM: Round [406] log likelihood: -4264.568329
EM: Round [407] log likelihood: -4264.568192
EM: Round [408] log likelihood: -4264.568055
EM: Round [409] log likelihood: -4264.567920
EM: Round [410] log likelihood: -4264.567786
EM: Round [411] log likelihood: -4264.567653
EM: Round [412] log likelihood: -4264.567521
EM: Round [413] log likelihood: -4264.567390
EM: Round [414] log likelihood: -4264.567260
EM: Round [415] log likelihood: -4264.567132
EM: Round [416] log likelihood: -4264.567004
EM: Round [417] log likelihood: -4264.566878
EM: Round [418] log likelihood: -4264.566753
EM: Round [419] log likelihood: -4264.566629
EM: Round [420] log likelihood: -4264.566506
EM: Round [421] log likelihood: -4264.566383
EM: Round [422] log likelihood: -4264.566262
EM: Round [423] log likelihood: -4264.566142
EM: Round [424] log likelihood: -4264.566023
EM: Round [425] log likelihood: -4264.565905
EM: Round [426] log likelihood: -4264.565788
EM: Round [427] log likelihood: -4264.565672
EM: Round [428] log likelihood: -4264.565557
EM: Round [429] log likelihood: -4264.565443
EM: Round [430] log likelihood: -4264.565330
EM: Round [431] log likelihood: -4264.565218
EM: Round [432] log likelihood: -4264.565107
EM: Round [433] log likelihood: -4264.564997
EM: Round [434] log likelihood: -4264.564888
EM: Round [435] log likelihood: -4264.564779
EM: Round [436] log likelihood: -4264.564672
EM: Round [437] log likelihood: -4264.564565
EM: Round [438] log likelihood: -4264.564460
EM: Round [439] log likelihood: -4264.564355
EM: Round [440] log likelihood: -4264.564251
EM: Round [441] log likelihood: -4264.564148
EM: Round [442] log likelihood: -4264.564046
EM: Round [443] log likelihood: -4264.563945
EM: Round [444] log likelihood: -4264.563845
EM: Round [445] log likelihood: -4264.563746
EM: Stopping iterations at round 445 due to insufficient improvement in likelihood.
-total frags in /tmp/nxf.XcfmkvrFWR/aih-tih-sc-2e5fe9-R1_A23YTGFLT4_1_1.fastp.fastq.gz: 296338986
Warning - not locating file: /tmp/nxf.XcfmkvrFWR/aih-tih-sc-2e5fe9-R1_A23YTGFLT4_1.gmap_trinity_GG.fusions.gff3.bed
WARNING, no entry stored in dbm for [ENSG00000189136.9]
WARNING, no entry stored in dbm for [ENSG00000174384.9]
WARNING, no entry stored in dbm for [ENSG00000174384.9]
WARNING, no entry stored in dbm for [ENSG00000174384.9]
WARNING, no entry stored in dbm for [ENSG00000174384.9]
WARNING, no entry stored in dbm for [ENSG00000226240.2]
WARNING, no entry stored in dbm for [ENSG00000254560.6]
WARNING, no entry stored in dbm for [ENSG00000237978.6]
WARNING, no entry stored in dbm for [ENSG00000280136.2]
WARNING, no entry stored in dbm for [ENSG00000229140.11]
WARNING, no entry stored in dbm for [ENSG00000229140.11]
WARNING, no entry stored in dbm for [ENSG00000229140.11]
WARNING, no entry stored in dbm for [ENSG00000229140.11]
WARNING, no entry stored in dbm for [ENSG00000236438.7]
WARNING, no entry stored in dbm for [ENSG00000249909.1]
WARNING, no entry stored in dbm for [ENSG00000123201.14]
WARNING, no entry stored in dbm for [ENSG00000286030.2]
WARNING, no entry stored in dbm for [ENSG00000286030.2]
WARNING, no entry stored in dbm for [ENSG00000286065.2]
WARNING, no entry stored in dbm for [ENSG00000286030.2]
WARNING, no entry stored in dbm for [ENSG00000286030.2]
WARNING, no entry stored in dbm for [ENSG00000226049.3]
WARNING, no entry stored in dbm for [ENSG00000260404.3]
WARNING, no entry stored in dbm for [ENSG00000282057.1]
WARNING, no entry stored in dbm for [ENSG00000282057.1]
ls: cannot access 'IGV_inputs': No such file or directory