Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/bd/f46c446ee3afbc48176b612ea190de/aih-tih-sc-3270ab-R1_A23YTGFLT4_1.Aligned.sortedByCoord.out.bam Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/80/47b920ab39dbba47556489363af353/.command.sh Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/80/47b920ab39dbba47556489363af353/.command.run ==> STAGING COMPLETE (3 inputs) /usr/local/bin/picard: line 5: warning: setlocale: LC_ALL: cannot change locale (en_US.UTF-8): No such file or directory INFO 2026-06-03 20:30:43 RExecutor Executing R script via command: Rscript /tmp/script6535436157868214948.R ERROR 2026-06-03 20:30:43 ProcessExecutor /bin/sh: warning: setlocale: LC_ALL: cannot change locale (en_US.UTF-8) ERROR 2026-06-03 20:30:43 ProcessExecutor sh: warning: setlocale: LC_ALL: cannot change locale (en_US.UTF-8) ERROR 2026-06-03 20:30:43 ProcessExecutor sh: warning: setlocale: LC_ALL: cannot change locale (en_US.UTF-8) ERROR 2026-06-03 20:30:43 ProcessExecutor During startup - Warning messages: ERROR 2026-06-03 20:30:43 ProcessExecutor 1: Setting LC_CTYPE failed, using "C" ERROR 2026-06-03 20:30:43 ProcessExecutor 2: Setting LC_COLLATE failed, using "C" ERROR 2026-06-03 20:30:43 ProcessExecutor 3: Setting LC_TIME failed, using "C" ERROR 2026-06-03 20:30:43 ProcessExecutor 4: Setting LC_MESSAGES failed, using "C" ERROR 2026-06-03 20:30:43 ProcessExecutor 5: Setting LC_MONETARY failed, using "C" ERROR 2026-06-03 20:30:43 ProcessExecutor 6: Setting LC_PAPER failed, using "C" ERROR 2026-06-03 20:30:43 ProcessExecutor 7: Setting LC_MEASUREMENT failed, using "C" INFO 2026-06-03 20:30:43 ProcessExecutor [1] "Checking if R is installed" ERROR 2026-06-03 20:30:43 ProcessExecutor sh: warning: setlocale: LC_ALL: cannot change locale (en_US.UTF-8) Jun 03, 2026 8:30:43 PM com.intel.gkl.NativeLibraryLoader load INFO: Loading libgkl_compression.so from jar:file:/usr/local/share/picard-3.1.0-0/picard.jar!/com/intel/gkl/native/libgkl_compression.so [Wed Jun 03 20:30:43 GMT 2026] CollectInsertSizeMetrics --Histogram_FILE aih-tih-sc-3270ab-R1_A23YTGFLT4_1_collectinsertsize.pdf --INPUT aih-tih-sc-3270ab-R1_A23YTGFLT4_1.Aligned.sortedByCoord.out.bam --OUTPUT aih-tih-sc-3270ab-R1_A23YTGFLT4_1_collectinsertsize.txt --DEVIATIONS 10.0 --MINIMUM_PCT 0.05 --METRIC_ACCUMULATION_LEVEL ALL_READS --INCLUDE_DUPLICATES false --ASSUME_SORTED true --STOP_AFTER 0 --VERBOSITY INFO --QUIET false --VALIDATION_STRINGENCY STRICT --COMPRESSION_LEVEL 5 --MAX_RECORDS_IN_RAM 500000 --CREATE_INDEX false --CREATE_MD5_FILE false --help false --version false --showHidden false --USE_JDK_DEFLATER false --USE_JDK_INFLATER false [Wed Jun 03 20:30:44 GMT 2026] Executing as ?@nf-8047b920ab39dbba47556489363af353-31101-vfhb7 on Linux 6.12.88 amd64; OpenJDK 64-Bit Server VM 20-internal-adhoc..src; Deflater: Intel; Inflater: Intel; Provider GCS is available; Picard version: Version:3.1.0 INFO 2026-06-03 20:30:45 SinglePassSamProgram Processed 1,000,000 records. Elapsed time: 00:00:01s. Time for last 1,000,000: 1s. Last read position: chr1:1,310,906 INFO 2026-06-03 20:30:45 SinglePassSamProgram Processed 2,000,000 records. Elapsed time: 00:00:01s. Time for last 1,000,000: 0s. Last read position: chr1:1,671,559 INFO 2026-06-03 20:30:46 SinglePassSamProgram Processed 3,000,000 records. Elapsed time: 00:00:02s. Time for last 1,000,000: 0s. Last read position: chr1:5,880,157 INFO 2026-06-03 20:30:47 SinglePassSamProgram Processed 4,000,000 records. Elapsed time: 00:00:03s. Time for last 1,000,000: 0s. Last read position: chr1:8,865,407 INFO 2026-06-03 20:30:48 SinglePassSamProgram Processed 5,000,000 records. Elapsed time: 00:00:04s. Time for last 1,000,000: 0s. Last read position: chr1:11,237,879 INFO 2026-06-03 20:30:49 SinglePassSamProgram Processed 6,000,000 records. Elapsed time: 00:00:05s. Time for last 1,000,000: 0s. Last read position: chr1:15,717,930 INFO 2026-06-03 20:30:49 SinglePassSamProgram Processed 7,000,000 records. Elapsed time: 00:00:05s. Time for last 1,000,000: 0s. Last read position: chr1:16,987,149 INFO 2026-06-03 20:30:50 SinglePassSamProgram Processed 8,000,000 records. Elapsed time: 00:00:06s. Time for last 1,000,000: 0s. Last read position: chr1:19,288,538 INFO 2026-06-03 20:30:51 SinglePassSamProgram Processed 9,000,000 records. Elapsed time: 00:00:07s. Time for last 1,000,000: 0s. Last read position: chr1:21,823,233 INFO 2026-06-03 20:30:52 SinglePassSamProgram Processed 10,000,000 records. Elapsed time: 00:00:08s. Time for last 1,000,000: 0s. Last read position: chr1:21,864,124 INFO 2026-06-03 20:30:53 SinglePassSamProgram Processed 11,000,000 records. Elapsed time: 00:00:08s. Time for last 1,000,000: 0s. Last read position: chr1:22,643,666 INFO 2026-06-03 20:30:53 SinglePassSamProgram Processed 12,000,000 records. Elapsed time: 00:00:09s. Time for last 1,000,000: 0s. Last read position: chr1:23,820,559 INFO 2026-06-03 20:30:54 SinglePassSamProgram Processed 13,000,000 records. Elapsed time: 00:00:10s. Time for last 1,000,000: 0s. Last read position: chr1:26,573,234 INFO 2026-06-03 20:30:55 SinglePassSamProgram Processed 14,000,000 records. Elapsed time: 00:00:11s. Time for last 1,000,000: 0s. Last read position: chr1:27,872,610 INFO 2026-06-03 20:30:56 SinglePassSamProgram Processed 15,000,000 records. Elapsed time: 00:00:12s. Time for last 1,000,000: 0s. Last read position: chr1:31,586,964 INFO 2026-06-03 20:30:56 SinglePassSamProgram Processed 16,000,000 records. Elapsed time: 00:00:12s. Time for last 1,000,000: 0s. Last read position: chr1:32,770,816 INFO 2026-06-03 20:30:57 SinglePassSamProgram Processed 17,000,000 records. Elapsed time: 00:00:13s. Time for last 1,000,000: 0s. Last read position: chr1:35,832,150 INFO 2026-06-03 20:30:58 SinglePassSamProgram Processed 18,000,000 records. Elapsed time: 00:00:14s. Time for last 1,000,000: 0s. Last read position: chr1:39,028,919 INFO 2026-06-03 20:30:59 SinglePassSamProgram Processed 19,000,000 records. Elapsed time: 00:00:15s. Time for last 1,000,000: 0s. Last read position: chr1:40,059,440 INFO 2026-06-03 20:30:59 SinglePassSamProgram Processed 20,000,000 records. Elapsed time: 00:00:15s. Time for last 1,000,000: 0s. Last read position: chr1:42,958,716 INFO 2026-06-03 20:31:00 SinglePassSamProgram Processed 21,000,000 records. Elapsed time: 00:00:16s. Time for last 1,000,000: 0s. Last read position: chr1:44,776,063 INFO 2026-06-03 20:31:01 SinglePassSamProgram Processed 22,000,000 records. Elapsed time: 00:00:17s. Time for last 1,000,000: 0s. Last read position: chr1:46,394,344 INFO 2026-06-03 20:31:02 SinglePassSamProgram Processed 23,000,000 records. Elapsed time: 00:00:18s. Time for last 1,000,000: 0s. Last read position: chr1:54,047,296 INFO 2026-06-03 20:31:03 SinglePassSamProgram Processed 24,000,000 records. Elapsed time: 00:00:19s. Time for last 1,000,000: 0s. Last read position: chr1:64,805,076 INFO 2026-06-03 20:31:03 SinglePassSamProgram Processed 25,000,000 records. Elapsed time: 00:00:19s. Time for last 1,000,000: 0s. Last read position: chr1:84,495,940 INFO 2026-06-03 20:31:04 SinglePassSamProgram Processed 26,000,000 records. Elapsed time: 00:00:20s. Time for last 1,000,000: 0s. Last read position: chr1:92,075,142 INFO 2026-06-03 20:31:05 SinglePassSamProgram Processed 27,000,000 records. Elapsed time: 00:00:21s. Time for last 1,000,000: 0s. Last read position: chr1:102,979,390 INFO 2026-06-03 20:31:06 SinglePassSamProgram Processed 28,000,000 records. Elapsed time: 00:00:22s. Time for last 1,000,000: 0s. Last read position: chr1:110,044,872 INFO 2026-06-03 20:31:07 SinglePassSamProgram Processed 29,000,000 records. Elapsed time: 00:00:22s. Time for last 1,000,000: 0s. Last read position: chr1:113,940,659 INFO 2026-06-03 20:31:07 SinglePassSamProgram Processed 30,000,000 records. Elapsed time: 00:00:23s. Time for last 1,000,000: 0s. Last read position: chr1:116,584,829 INFO 2026-06-03 20:31:08 SinglePassSamProgram Processed 31,000,000 records. Elapsed time: 00:00:24s. Time for last 1,000,000: 0s. Last read position: chr1:120,069,339 INFO 2026-06-03 20:31:09 SinglePassSamProgram Processed 32,000,000 records. Elapsed time: 00:00:25s. Time for last 1,000,000: 0s. Last read position: chr1:146,106,585 INFO 2026-06-03 20:31:10 SinglePassSamProgram Processed 33,000,000 records. Elapsed time: 00:00:25s. Time for last 1,000,000: 0s. Last read position: chr1:149,077,263 INFO 2026-06-03 20:31:10 SinglePassSamProgram Processed 34,000,000 records. Elapsed time: 00:00:26s. Time for last 1,000,000: 0s. Last read position: chr1:149,933,889 INFO 2026-06-03 20:31:11 SinglePassSamProgram Processed 35,000,000 records. Elapsed time: 00:00:27s. Time for last 1,000,000: 0s. Last read position: chr1:150,796,841 INFO 2026-06-03 20:31:12 SinglePassSamProgram Processed 36,000,000 records. Elapsed time: 00:00:28s. Time for last 1,000,000: 0s. Last read position: chr1:152,216,477 INFO 2026-06-03 20:31:13 SinglePassSamProgram Processed 37,000,000 records. Elapsed time: 00:00:29s. Time for last 1,000,000: 0s. Last read position: chr1:154,170,648 INFO 2026-06-03 20:31:13 SinglePassSamProgram Processed 38,000,000 records. Elapsed time: 00:00:29s. Time for last 1,000,000: 0s. Last read position: chr1:154,951,490 INFO 2026-06-03 20:31:14 SinglePassSamProgram Processed 39,000,000 records. Elapsed time: 00:00:30s. Time for last 1,000,000: 0s. Last read position: chr1:155,326,679 INFO 2026-06-03 20:31:15 SinglePassSamProgram Processed 40,000,000 records. Elapsed time: 00:00:31s. Time for last 1,000,000: 0s. Last read position: chr1:156,130,638 INFO 2026-06-03 20:31:16 SinglePassSamProgram Processed 41,000,000 records. Elapsed time: 00:00:32s. Time for last 1,000,000: 0s. Last read position: chr1:156,200,243 INFO 2026-06-03 20:31:16 SinglePassSamProgram Processed 42,000,000 records. Elapsed time: 00:00:32s. Time for last 1,000,000: 0s. Last read position: chr1:158,847,804 INFO 2026-06-03 20:31:17 SinglePassSamProgram Processed 43,000,000 records. Elapsed time: 00:00:33s. Time for last 1,000,000: 0s. Last read position: chr1:161,196,284 INFO 2026-06-03 20:31:18 SinglePassSamProgram Processed 44,000,000 records. Elapsed time: 00:00:34s. Time for last 1,000,000: 0s. Last read position: chr1:167,553,424 INFO 2026-06-03 20:31:19 SinglePassSamProgram Processed 45,000,000 records. Elapsed time: 00:00:35s. Time for last 1,000,000: 0s. Last read position: chr1:169,131,370 INFO 2026-06-03 20:31:19 SinglePassSamProgram Processed 46,000,000 records. Elapsed time: 00:00:35s. Time for last 1,000,000: 0s. Last read position: chr1:178,094,564 INFO 2026-06-03 20:31:20 SinglePassSamProgram Processed 47,000,000 records. Elapsed time: 00:00:36s. Time for last 1,000,000: 0s. Last read position: chr1:183,136,384 INFO 2026-06-03 20:31:21 SinglePassSamProgram Processed 48,000,000 records. Elapsed time: 00:00:37s. Time for last 1,000,000: 0s. Last read position: chr1:186,357,561 INFO 2026-06-03 20:31:22 SinglePassSamProgram Processed 49,000,000 records. Elapsed time: 00:00:38s. Time for last 1,000,000: 0s. Last read position: chr1:201,484,699 INFO 2026-06-03 20:31:23 SinglePassSamProgram Processed 50,000,000 records. Elapsed time: 00:00:39s. Time for last 1,000,000: 0s. Last read position: chr1:203,707,939 INFO 2026-06-03 20:31:23 SinglePassSamProgram Processed 51,000,000 records. Elapsed time: 00:00:39s. Time for last 1,000,000: 0s. Last read position: chr1:206,492,989 INFO 2026-06-03 20:31:24 SinglePassSamProgram Processed 52,000,000 records. Elapsed time: 00:00:40s. Time for last 1,000,000: 0s. Last read position: chr1:207,331,224 INFO 2026-06-03 20:31:25 SinglePassSamProgram Processed 53,000,000 records. Elapsed time: 00:00:41s. Time for last 1,000,000: 0s. Last read position: chr1:214,642,963 INFO 2026-06-03 20:31:26 SinglePassSamProgram Processed 54,000,000 records. Elapsed time: 00:00:42s. Time for last 1,000,000: 0s. Last read position: chr1:225,519,198 INFO 2026-06-03 20:31:26 SinglePassSamProgram Processed 55,000,000 records. Elapsed time: 00:00:42s. Time for last 1,000,000: 0s. Last read position: chr1:228,279,410 INFO 2026-06-03 20:31:27 SinglePassSamProgram Processed 56,000,000 records. Elapsed time: 00:00:43s. Time for last 1,000,000: 0s. Last read position: chr1:234,608,992 INFO 2026-06-03 20:31:28 SinglePassSamProgram Processed 57,000,000 records. Elapsed time: 00:00:44s. Time for last 1,000,000: 0s. Last read position: chr1:244,858,814 INFO 2026-06-03 20:31:29 SinglePassSamProgram Processed 58,000,000 records. Elapsed time: 00:00:45s. Time for last 1,000,000: 0s. Last read position: chr2:6,840,557 INFO 2026-06-03 20:31:30 SinglePassSamProgram Processed 59,000,000 records. Elapsed time: 00:00:45s. Time for last 1,000,000: 0s. Last read position: chr2:15,617,273 INFO 2026-06-03 20:31:30 SinglePassSamProgram Processed 60,000,000 records. Elapsed time: 00:00:46s. Time for last 1,000,000: 0s. Last read position: chr2:24,821,295 INFO 2026-06-03 20:31:31 SinglePassSamProgram Processed 61,000,000 records. Elapsed time: 00:00:47s. Time for last 1,000,000: 0s. Last read position: chr2:27,205,488 INFO 2026-06-03 20:31:32 SinglePassSamProgram Processed 62,000,000 records. Elapsed time: 00:00:48s. Time for last 1,000,000: 0s. Last read position: chr2:28,869,798 INFO 2026-06-03 20:31:33 SinglePassSamProgram Processed 63,000,000 records. Elapsed time: 00:00:49s. Time for last 1,000,000: 0s. Last read position: chr2:32,916,258 INFO 2026-06-03 20:31:33 SinglePassSamProgram Processed 64,000,000 records. Elapsed time: 00:00:49s. Time for last 1,000,000: 0s. Last read position: chr2:32,916,264 INFO 2026-06-03 20:31:34 SinglePassSamProgram Processed 65,000,000 records. Elapsed time: 00:00:50s. Time for last 1,000,000: 0s. Last read position: chr2:32,916,406 INFO 2026-06-03 20:31:35 SinglePassSamProgram Processed 66,000,000 records. Elapsed time: 00:00:51s. Time for last 1,000,000: 0s. Last read position: chr2:33,134,873 INFO 2026-06-03 20:31:36 SinglePassSamProgram Processed 67,000,000 records. Elapsed time: 00:00:52s. Time for last 1,000,000: 0s. Last read position: chr2:42,261,163 INFO 2026-06-03 20:31:36 SinglePassSamProgram Processed 68,000,000 records. Elapsed time: 00:00:52s. Time for last 1,000,000: 0s. Last read position: chr2:44,201,290 INFO 2026-06-03 20:31:37 SinglePassSamProgram Processed 69,000,000 records. Elapsed time: 00:00:53s. Time for last 1,000,000: 0s. Last read position: chr2:54,622,311 INFO 2026-06-03 20:31:38 SinglePassSamProgram Processed 70,000,000 records. Elapsed time: 00:00:54s. Time for last 1,000,000: 0s. Last read position: chr2:55,558,859 INFO 2026-06-03 20:31:39 SinglePassSamProgram Processed 71,000,000 records. Elapsed time: 00:00:55s. Time for last 1,000,000: 0s. Last read position: chr2:65,246,699 INFO 2026-06-03 20:31:39 SinglePassSamProgram Processed 72,000,000 records. Elapsed time: 00:00:55s. Time for last 1,000,000: 0s. Last read position: chr2:71,355,777 INFO 2026-06-03 20:31:40 SinglePassSamProgram Processed 73,000,000 records. Elapsed time: 00:00:56s. Time for last 1,000,000: 0s. Last read position: chr2:74,369,449 INFO 2026-06-03 20:31:41 SinglePassSamProgram Processed 74,000,000 records. Elapsed time: 00:00:57s. Time for last 1,000,000: 0s. Last read position: chr2:85,399,162 INFO 2026-06-03 20:31:42 SinglePassSamProgram Processed 75,000,000 records. Elapsed time: 00:00:58s. Time for last 1,000,000: 0s. Last read position: chr2:88,857,375 INFO 2026-06-03 20:31:43 SinglePassSamProgram Processed 76,000,000 records. Elapsed time: 00:00:59s. Time for last 1,000,000: 0s. Last read position: chr2:97,584,980 INFO 2026-06-03 20:31:43 SinglePassSamProgram Processed 77,000,000 records. Elapsed time: 00:00:59s. Time for last 1,000,000: 0s. Last read position: chr2:105,881,458 INFO 2026-06-03 20:31:44 SinglePassSamProgram Processed 78,000,000 records. Elapsed time: 00:01:00s. Time for last 1,000,000: 0s. Last read position: chr2:109,803,444 INFO 2026-06-03 20:31:45 SinglePassSamProgram Processed 79,000,000 records. Elapsed time: 00:01:01s. Time for last 1,000,000: 0s. Last read position: chr2:112,659,216 INFO 2026-06-03 20:31:46 SinglePassSamProgram Processed 80,000,000 records. Elapsed time: 00:01:02s. Time for last 1,000,000: 0s. Last read position: chr2:127,584,240 INFO 2026-06-03 20:31:46 SinglePassSamProgram Processed 81,000,000 records. Elapsed time: 00:01:02s. Time for last 1,000,000: 0s. Last read position: chr2:135,622,671 INFO 2026-06-03 20:31:47 SinglePassSamProgram Processed 82,000,000 records. Elapsed time: 00:01:03s. Time for last 1,000,000: 0s. Last read position: chr2:158,624,992 INFO 2026-06-03 20:31:48 SinglePassSamProgram Processed 83,000,000 records. Elapsed time: 00:01:04s. Time for last 1,000,000: 0s. Last read position: chr2:170,962,912 INFO 2026-06-03 20:31:49 SinglePassSamProgram Processed 84,000,000 records. Elapsed time: 00:01:05s. Time for last 1,000,000: 0s. Last read position: chr2:177,219,594 INFO 2026-06-03 20:31:50 SinglePassSamProgram Processed 85,000,000 records. Elapsed time: 00:01:05s. Time for last 1,000,000: 0s. Last read position: chr2:188,974,518 INFO 2026-06-03 20:31:50 SinglePassSamProgram Processed 86,000,000 records. Elapsed time: 00:01:06s. Time for last 1,000,000: 0s. Last read position: chr2:189,001,565 INFO 2026-06-03 20:31:51 SinglePassSamProgram Processed 87,000,000 records. Elapsed time: 00:01:07s. Time for last 1,000,000: 0s. Last read position: chr2:189,057,366 INFO 2026-06-03 20:31:52 SinglePassSamProgram Processed 88,000,000 records. Elapsed time: 00:01:08s. Time for last 1,000,000: 0s. Last read position: chr2:191,678,988 INFO 2026-06-03 20:31:53 SinglePassSamProgram Processed 89,000,000 records. Elapsed time: 00:01:09s. Time for last 1,000,000: 0s. Last read position: chr2:201,276,790 INFO 2026-06-03 20:31:53 SinglePassSamProgram Processed 90,000,000 records. Elapsed time: 00:01:09s. Time for last 1,000,000: 0s. Last read position: chr2:208,302,261 INFO 2026-06-03 20:31:54 SinglePassSamProgram Processed 91,000,000 records. Elapsed time: 00:01:10s. Time for last 1,000,000: 0s. Last read position: chr2:215,370,340 INFO 2026-06-03 20:31:55 SinglePassSamProgram Processed 92,000,000 records. Elapsed time: 00:01:11s. Time for last 1,000,000: 0s. Last read position: chr2:215,375,306 INFO 2026-06-03 20:31:56 SinglePassSamProgram Processed 93,000,000 records. Elapsed time: 00:01:12s. Time for last 1,000,000: 0s. Last read position: chr2:215,382,212 INFO 2026-06-03 20:31:57 SinglePassSamProgram Processed 94,000,000 records. Elapsed time: 00:01:12s. Time for last 1,000,000: 0s. Last read position: chr2:215,394,565 INFO 2026-06-03 20:31:57 SinglePassSamProgram Processed 95,000,000 records. Elapsed time: 00:01:13s. Time for last 1,000,000: 0s. Last read position: chr2:215,407,153 INFO 2026-06-03 20:31:58 SinglePassSamProgram Processed 96,000,000 records. Elapsed time: 00:01:14s. Time for last 1,000,000: 0s. Last read position: chr2:215,420,703 INFO 2026-06-03 20:31:59 SinglePassSamProgram Processed 97,000,000 records. Elapsed time: 00:01:15s. Time for last 1,000,000: 0s. Last read position: chr2:215,431,839 INFO 2026-06-03 20:32:00 SinglePassSamProgram Processed 98,000,000 records. Elapsed time: 00:01:16s. Time for last 1,000,000: 0s. Last read position: chr2:216,679,007 INFO 2026-06-03 20:32:00 SinglePassSamProgram Processed 99,000,000 records. Elapsed time: 00:01:16s. Time for last 1,000,000: 0s. Last read position: chr2:218,429,612 INFO 2026-06-03 20:32:01 SinglePassSamProgram Processed 100,000,000 records. Elapsed time: 00:01:17s. Time for last 1,000,000: 0s. Last read position: chr2:219,425,686 INFO 2026-06-03 20:32:02 SinglePassSamProgram Processed 101,000,000 records. Elapsed time: 00:01:18s. Time for last 1,000,000: 0s. Last read position: chr2:229,785,790 INFO 2026-06-03 20:32:03 SinglePassSamProgram Processed 102,000,000 records. Elapsed time: 00:01:19s. Time for last 1,000,000: 0s. Last read position: chr2:231,712,449 INFO 2026-06-03 20:32:03 SinglePassSamProgram Processed 103,000,000 records. Elapsed time: 00:01:19s. Time for last 1,000,000: 0s. Last read position: chr2:237,340,880 INFO 2026-06-03 20:32:04 SinglePassSamProgram Processed 104,000,000 records. Elapsed time: 00:01:20s. Time for last 1,000,000: 0s. Last read position: chr2:237,372,092 INFO 2026-06-03 20:32:05 SinglePassSamProgram Processed 105,000,000 records. Elapsed time: 00:01:21s. Time for last 1,000,000: 0s. Last read position: chr2:240,005,263 INFO 2026-06-03 20:32:06 SinglePassSamProgram Processed 106,000,000 records. Elapsed time: 00:01:22s. Time for last 1,000,000: 0s. Last read position: chr2:241,633,699 INFO 2026-06-03 20:32:07 SinglePassSamProgram Processed 107,000,000 records. Elapsed time: 00:01:23s. Time for last 1,000,000: 0s. Last read position: chr3:9,902,884 INFO 2026-06-03 20:32:07 SinglePassSamProgram Processed 108,000,000 records. Elapsed time: 00:01:23s. Time for last 1,000,000: 0s. Last read position: chr3:13,570,339 INFO 2026-06-03 20:32:08 SinglePassSamProgram Processed 109,000,000 records. Elapsed time: 00:01:24s. Time for last 1,000,000: 0s. Last read position: chr3:23,532,579 INFO 2026-06-03 20:32:09 SinglePassSamProgram Processed 110,000,000 records. Elapsed time: 00:01:25s. Time for last 1,000,000: 0s. Last read position: chr3:36,856,186 INFO 2026-06-03 20:32:10 SinglePassSamProgram Processed 111,000,000 records. Elapsed time: 00:01:26s. Time for last 1,000,000: 0s. Last read position: chr3:41,224,070 INFO 2026-06-03 20:32:10 SinglePassSamProgram Processed 112,000,000 records. Elapsed time: 00:01:26s. Time for last 1,000,000: 0s. Last read position: chr3:45,709,584 INFO 2026-06-03 20:32:11 SinglePassSamProgram Processed 113,000,000 records. Elapsed time: 00:01:27s. Time for last 1,000,000: 0s. Last read position: chr3:47,417,551 INFO 2026-06-03 20:32:12 SinglePassSamProgram Processed 114,000,000 records. Elapsed time: 00:01:28s. Time for last 1,000,000: 0s. Last read position: chr3:48,469,164 INFO 2026-06-03 20:32:13 SinglePassSamProgram Processed 115,000,000 records. Elapsed time: 00:01:29s. Time for last 1,000,000: 0s. Last read position: chr3:49,015,387 INFO 2026-06-03 20:32:14 SinglePassSamProgram Processed 116,000,000 records. Elapsed time: 00:01:30s. Time for last 1,000,000: 0s. Last read position: chr3:49,419,225 INFO 2026-06-03 20:32:14 SinglePassSamProgram Processed 117,000,000 records. Elapsed time: 00:01:30s. Time for last 1,000,000: 0s. Last read position: chr3:50,271,447 INFO 2026-06-03 20:32:15 SinglePassSamProgram Processed 118,000,000 records. Elapsed time: 00:01:31s. Time for last 1,000,000: 0s. Last read position: chr3:52,290,448 INFO 2026-06-03 20:32:16 SinglePassSamProgram Processed 119,000,000 records. Elapsed time: 00:01:32s. Time for last 1,000,000: 0s. Last read position: chr3:53,231,388 INFO 2026-06-03 20:32:17 SinglePassSamProgram Processed 120,000,000 records. Elapsed time: 00:01:33s. Time for last 1,000,000: 0s. Last read position: chr3:58,163,190 INFO 2026-06-03 20:32:17 SinglePassSamProgram Processed 121,000,000 records. Elapsed time: 00:01:33s. Time for last 1,000,000: 0s. Last read position: chr3:75,214,539 INFO 2026-06-03 20:32:18 SinglePassSamProgram Processed 122,000,000 records. Elapsed time: 00:01:34s. Time for last 1,000,000: 0s. Last read position: chr3:100,775,326 INFO 2026-06-03 20:32:19 SinglePassSamProgram Processed 123,000,000 records. Elapsed time: 00:01:35s. Time for last 1,000,000: 0s. Last read position: chr3:114,070,664 INFO 2026-06-03 20:32:20 SinglePassSamProgram Processed 124,000,000 records. Elapsed time: 00:01:36s. Time for last 1,000,000: 0s. Last read position: chr3:122,701,568 INFO 2026-06-03 20:32:21 SinglePassSamProgram Processed 125,000,000 records. Elapsed time: 00:01:37s. Time for last 1,000,000: 0s. Last read position: chr3:126,989,430 INFO 2026-06-03 20:32:21 SinglePassSamProgram Processed 126,000,000 records. Elapsed time: 00:01:37s. Time for last 1,000,000: 0s. Last read position: chr3:129,315,256 INFO 2026-06-03 20:32:22 SinglePassSamProgram Processed 127,000,000 records. Elapsed time: 00:01:38s. Time for last 1,000,000: 0s. Last read position: chr3:138,097,805 INFO 2026-06-03 20:32:23 SinglePassSamProgram Processed 128,000,000 records. Elapsed time: 00:01:39s. Time for last 1,000,000: 0s. Last read position: chr3:150,603,386 INFO 2026-06-03 20:32:24 SinglePassSamProgram Processed 129,000,000 records. Elapsed time: 00:01:40s. Time for last 1,000,000: 0s. Last read position: chr3:170,260,041 INFO 2026-06-03 20:32:24 SinglePassSamProgram Processed 130,000,000 records. Elapsed time: 00:01:40s. Time for last 1,000,000: 0s. Last read position: chr3:183,844,257 INFO 2026-06-03 20:32:25 SinglePassSamProgram Processed 131,000,000 records. Elapsed time: 00:01:41s. Time for last 1,000,000: 0s. Last read position: chr3:184,572,954 INFO 2026-06-03 20:32:26 SinglePassSamProgram Processed 132,000,000 records. Elapsed time: 00:01:42s. Time for last 1,000,000: 0s. Last read position: chr3:188,866,221 INFO 2026-06-03 20:32:27 SinglePassSamProgram Processed 133,000,000 records. Elapsed time: 00:01:43s. Time for last 1,000,000: 0s. Last read position: chr3:195,782,419 INFO 2026-06-03 20:32:28 SinglePassSamProgram Processed 134,000,000 records. Elapsed time: 00:01:44s. Time for last 1,000,000: 0s. Last read position: chr3:197,009,692 INFO 2026-06-03 20:32:28 SinglePassSamProgram Processed 135,000,000 records. Elapsed time: 00:01:44s. Time for last 1,000,000: 0s. Last read position: chr4:1,212,945 INFO 2026-06-03 20:32:29 SinglePassSamProgram Processed 136,000,000 records. Elapsed time: 00:01:45s. Time for last 1,000,000: 0s. Last read position: chr4:2,830,001 INFO 2026-06-03 20:32:30 SinglePassSamProgram Processed 137,000,000 records. Elapsed time: 00:01:46s. Time for last 1,000,000: 0s. Last read position: chr4:7,060,951 INFO 2026-06-03 20:32:31 SinglePassSamProgram Processed 138,000,000 records. Elapsed time: 00:01:47s. Time for last 1,000,000: 0s. Last read position: chr4:17,579,906 INFO 2026-06-03 20:32:31 SinglePassSamProgram Processed 139,000,000 records. Elapsed time: 00:01:47s. Time for last 1,000,000: 0s. Last read position: chr4:39,308,713 INFO 2026-06-03 20:32:32 SinglePassSamProgram Processed 140,000,000 records. Elapsed time: 00:01:48s. Time for last 1,000,000: 0s. Last read position: chr4:54,267,684 INFO 2026-06-03 20:32:33 SinglePassSamProgram Processed 141,000,000 records. Elapsed time: 00:01:49s. Time for last 1,000,000: 0s. Last read position: chr4:67,623,166 INFO 2026-06-03 20:32:34 SinglePassSamProgram Processed 142,000,000 records. Elapsed time: 00:01:50s. Time for last 1,000,000: 0s. Last read position: chr4:76,175,811 INFO 2026-06-03 20:32:35 SinglePassSamProgram Processed 143,000,000 records. Elapsed time: 00:01:51s. Time for last 1,000,000: 0s. Last read position: chr4:83,094,657 INFO 2026-06-03 20:32:35 SinglePassSamProgram Processed 144,000,000 records. Elapsed time: 00:01:51s. Time for last 1,000,000: 0s. Last read position: chr4:95,278,340 INFO 2026-06-03 20:32:36 SinglePassSamProgram Processed 145,000,000 records. Elapsed time: 00:01:52s. Time for last 1,000,000: 0s. Last read position: chr4:112,606,082 INFO 2026-06-03 20:32:37 SinglePassSamProgram Processed 146,000,000 records. Elapsed time: 00:01:53s. Time for last 1,000,000: 0s. Last read position: chr4:123,401,568 INFO 2026-06-03 20:32:38 SinglePassSamProgram Processed 147,000,000 records. Elapsed time: 00:01:54s. Time for last 1,000,000: 0s. Last read position: chr4:145,892,258 INFO 2026-06-03 20:32:38 SinglePassSamProgram Processed 148,000,000 records. Elapsed time: 00:01:54s. Time for last 1,000,000: 0s. Last read position: chr4:155,713,273 INFO 2026-06-03 20:32:39 SinglePassSamProgram Processed 149,000,000 records. Elapsed time: 00:01:55s. Time for last 1,000,000: 0s. Last read position: chr4:177,442,258 INFO 2026-06-03 20:32:40 SinglePassSamProgram Processed 150,000,000 records. Elapsed time: 00:01:56s. Time for last 1,000,000: 0s. Last read position: chr4:186,707,222 INFO 2026-06-03 20:32:41 SinglePassSamProgram Processed 151,000,000 records. Elapsed time: 00:01:57s. Time for last 1,000,000: 0s. Last read position: chr5:6,754,838 INFO 2026-06-03 20:32:41 SinglePassSamProgram Processed 152,000,000 records. Elapsed time: 00:01:57s. Time for last 1,000,000: 0s. Last read position: chr5:14,419,986 INFO 2026-06-03 20:32:42 SinglePassSamProgram Processed 153,000,000 records. Elapsed time: 00:01:58s. Time for last 1,000,000: 0s. Last read position: chr5:32,274,056 INFO 2026-06-03 20:32:43 SinglePassSamProgram Processed 154,000,000 records. Elapsed time: 00:01:59s. Time for last 1,000,000: 0s. Last read position: chr5:41,803,068 INFO 2026-06-03 20:32:44 SinglePassSamProgram Processed 155,000,000 records. Elapsed time: 00:02:00s. Time for last 1,000,000: 0s. Last read position: chr5:62,530,743 INFO 2026-06-03 20:32:45 SinglePassSamProgram Processed 156,000,000 records. Elapsed time: 00:02:01s. Time for last 1,000,000: 0s. Last read position: chr5:72,196,822 INFO 2026-06-03 20:32:45 SinglePassSamProgram Processed 157,000,000 records. Elapsed time: 00:02:01s. Time for last 1,000,000: 0s. Last read position: chr5:79,237,539 INFO 2026-06-03 20:32:46 SinglePassSamProgram Processed 158,000,000 records. Elapsed time: 00:02:02s. Time for last 1,000,000: 0s. Last read position: chr5:87,372,124 INFO 2026-06-03 20:32:47 SinglePassSamProgram Processed 159,000,000 records. Elapsed time: 00:02:03s. Time for last 1,000,000: 0s. Last read position: chr5:108,381,075 INFO 2026-06-03 20:32:48 SinglePassSamProgram Processed 160,000,000 records. Elapsed time: 00:02:04s. Time for last 1,000,000: 0s. Last read position: chr5:128,110,157 INFO 2026-06-03 20:32:48 SinglePassSamProgram Processed 161,000,000 records. Elapsed time: 00:02:04s. Time for last 1,000,000: 0s. Last read position: chr5:134,142,998 INFO 2026-06-03 20:32:49 SinglePassSamProgram Processed 162,000,000 records. Elapsed time: 00:02:05s. Time for last 1,000,000: 0s. Last read position: chr5:138,166,609 INFO 2026-06-03 20:32:50 SinglePassSamProgram Processed 163,000,000 records. Elapsed time: 00:02:06s. Time for last 1,000,000: 0s. Last read position: chr5:139,476,443 INFO 2026-06-03 20:32:51 SinglePassSamProgram Processed 164,000,000 records. Elapsed time: 00:02:07s. Time for last 1,000,000: 0s. Last read position: chr5:141,413,369 INFO 2026-06-03 20:32:51 SinglePassSamProgram Processed 165,000,000 records. Elapsed time: 00:02:07s. Time for last 1,000,000: 0s. Last read position: chr5:146,124,034 INFO 2026-06-03 20:32:52 SinglePassSamProgram Processed 166,000,000 records. Elapsed time: 00:02:08s. Time for last 1,000,000: 0s. Last read position: chr5:150,120,964 INFO 2026-06-03 20:32:53 SinglePassSamProgram Processed 167,000,000 records. Elapsed time: 00:02:09s. Time for last 1,000,000: 0s. Last read position: chr5:150,402,197 INFO 2026-06-03 20:32:54 SinglePassSamProgram Processed 168,000,000 records. Elapsed time: 00:02:10s. Time for last 1,000,000: 0s. Last read position: chr5:150,405,123 INFO 2026-06-03 20:32:55 SinglePassSamProgram Processed 169,000,000 records. Elapsed time: 00:02:11s. Time for last 1,000,000: 0s. Last read position: chr5:150,649,403 INFO 2026-06-03 20:32:55 SinglePassSamProgram Processed 170,000,000 records. Elapsed time: 00:02:11s. Time for last 1,000,000: 0s. Last read position: chr5:154,755,918 INFO 2026-06-03 20:32:56 SinglePassSamProgram Processed 171,000,000 records. Elapsed time: 00:02:12s. Time for last 1,000,000: 0s. Last read position: chr5:168,700,622 INFO 2026-06-03 20:32:57 SinglePassSamProgram Processed 172,000,000 records. Elapsed time: 00:02:13s. Time for last 1,000,000: 0s. Last read position: chr5:171,400,899 INFO 2026-06-03 20:32:58 SinglePassSamProgram Processed 173,000,000 records. Elapsed time: 00:02:14s. Time for last 1,000,000: 0s. Last read position: chr5:176,577,338 INFO 2026-06-03 20:32:58 SinglePassSamProgram Processed 174,000,000 records. Elapsed time: 00:02:14s. Time for last 1,000,000: 0s. Last read position: chr5:177,491,785 INFO 2026-06-03 20:32:59 SinglePassSamProgram Processed 175,000,000 records. Elapsed time: 00:02:15s. Time for last 1,000,000: 0s. Last read position: chr5:179,706,272 INFO 2026-06-03 20:33:00 SinglePassSamProgram Processed 176,000,000 records. Elapsed time: 00:02:16s. Time for last 1,000,000: 0s. Last read position: chr5:179,833,089 INFO 2026-06-03 20:33:01 SinglePassSamProgram Processed 177,000,000 records. Elapsed time: 00:02:17s. Time for last 1,000,000: 0s. Last read position: chr5:181,243,792 INFO 2026-06-03 20:33:02 SinglePassSamProgram Processed 178,000,000 records. Elapsed time: 00:02:17s. Time for last 1,000,000: 0s. Last read position: chr6:7,229,480 INFO 2026-06-03 20:33:02 SinglePassSamProgram Processed 179,000,000 records. Elapsed time: 00:02:18s. Time for last 1,000,000: 0s. Last read position: chr6:12,121,855 INFO 2026-06-03 20:33:03 SinglePassSamProgram Processed 180,000,000 records. Elapsed time: 00:02:19s. Time for last 1,000,000: 0s. Last read position: chr6:25,488,529 INFO 2026-06-03 20:33:04 SinglePassSamProgram Processed 181,000,000 records. Elapsed time: 00:02:20s. Time for last 1,000,000: 0s. Last read position: chr6:26,445,633 INFO 2026-06-03 20:33:05 SinglePassSamProgram Processed 182,000,000 records. Elapsed time: 00:02:20s. Time for last 1,000,000: 0s. Last read position: chr6:29,723,565 INFO 2026-06-03 20:33:05 SinglePassSamProgram Processed 183,000,000 records. Elapsed time: 00:02:21s. Time for last 1,000,000: 0s. Last read position: chr6:30,602,087 INFO 2026-06-03 20:33:06 SinglePassSamProgram Processed 184,000,000 records. Elapsed time: 00:02:22s. Time for last 1,000,000: 0s. Last read position: chr6:31,271,075 INFO 2026-06-03 20:33:07 SinglePassSamProgram Processed 185,000,000 records. Elapsed time: 00:02:23s. Time for last 1,000,000: 0s. Last read position: chr6:31,633,529 INFO 2026-06-03 20:33:08 SinglePassSamProgram Processed 186,000,000 records. Elapsed time: 00:02:24s. Time for last 1,000,000: 0s. Last read position: chr6:31,817,038 INFO 2026-06-03 20:33:08 SinglePassSamProgram Processed 187,000,000 records. Elapsed time: 00:02:24s. Time for last 1,000,000: 0s. Last read position: chr6:31,994,689 INFO 2026-06-03 20:33:09 SinglePassSamProgram Processed 188,000,000 records. Elapsed time: 00:02:25s. Time for last 1,000,000: 0s. Last read position: chr6:32,443,337 INFO 2026-06-03 20:33:10 SinglePassSamProgram Processed 189,000,000 records. Elapsed time: 00:02:26s. Time for last 1,000,000: 0s. Last read position: chr6:32,979,920 INFO 2026-06-03 20:33:11 SinglePassSamProgram Processed 190,000,000 records. Elapsed time: 00:02:27s. Time for last 1,000,000: 0s. Last read position: chr6:33,412,385 INFO 2026-06-03 20:33:11 SinglePassSamProgram Processed 191,000,000 records. Elapsed time: 00:02:27s. Time for last 1,000,000: 0s. Last read position: chr6:35,319,867 INFO 2026-06-03 20:33:12 SinglePassSamProgram Processed 192,000,000 records. Elapsed time: 00:02:28s. Time for last 1,000,000: 0s. Last read position: chr6:41,028,472 INFO 2026-06-03 20:33:13 SinglePassSamProgram Processed 193,000,000 records. Elapsed time: 00:02:29s. Time for last 1,000,000: 0s. Last read position: chr6:43,141,723 INFO 2026-06-03 20:33:14 SinglePassSamProgram Processed 194,000,000 records. Elapsed time: 00:02:30s. Time for last 1,000,000: 0s. Last read position: chr6:44,148,254 INFO 2026-06-03 20:33:15 SinglePassSamProgram Processed 195,000,000 records. Elapsed time: 00:02:30s. Time for last 1,000,000: 0s. Last read position: chr6:52,282,716 INFO 2026-06-03 20:33:15 SinglePassSamProgram Processed 196,000,000 records. Elapsed time: 00:02:31s. Time for last 1,000,000: 0s. Last read position: chr6:63,580,098 INFO 2026-06-03 20:33:16 SinglePassSamProgram Processed 197,000,000 records. Elapsed time: 00:02:32s. Time for last 1,000,000: 0s. Last read position: chr6:75,181,201 INFO 2026-06-03 20:33:17 SinglePassSamProgram Processed 198,000,000 records. Elapsed time: 00:02:33s. Time for last 1,000,000: 0s. Last read position: chr6:87,518,572 INFO 2026-06-03 20:33:18 SinglePassSamProgram Processed 199,000,000 records. Elapsed time: 00:02:34s. Time for last 1,000,000: 0s. Last read position: chr6:106,971,680 INFO 2026-06-03 20:33:18 SinglePassSamProgram Processed 200,000,000 records. Elapsed time: 00:02:34s. Time for last 1,000,000: 0s. Last read position: chr6:112,216,425 INFO 2026-06-03 20:33:19 SinglePassSamProgram Processed 201,000,000 records. Elapsed time: 00:02:35s. Time for last 1,000,000: 0s. Last read position: chr6:127,453,847 INFO 2026-06-03 20:33:20 SinglePassSamProgram Processed 202,000,000 records. Elapsed time: 00:02:36s. Time for last 1,000,000: 0s. Last read position: chr6:135,201,646 INFO 2026-06-03 20:33:21 SinglePassSamProgram Processed 203,000,000 records. Elapsed time: 00:02:37s. Time for last 1,000,000: 0s. Last read position: chr6:143,765,504 INFO 2026-06-03 20:33:21 SinglePassSamProgram Processed 204,000,000 records. Elapsed time: 00:02:37s. Time for last 1,000,000: 0s. Last read position: chr6:151,350,914 INFO 2026-06-03 20:33:22 SinglePassSamProgram Processed 205,000,000 records. Elapsed time: 00:02:38s. Time for last 1,000,000: 0s. Last read position: chr6:158,502,690 INFO 2026-06-03 20:33:23 SinglePassSamProgram Processed 206,000,000 records. Elapsed time: 00:02:39s. Time for last 1,000,000: 0s. Last read position: chr6:159,682,496 INFO 2026-06-03 20:33:24 SinglePassSamProgram Processed 207,000,000 records. Elapsed time: 00:02:40s. Time for last 1,000,000: 0s. Last read position: chr6:167,915,165 INFO 2026-06-03 20:33:25 SinglePassSamProgram Processed 208,000,000 records. Elapsed time: 00:02:40s. Time for last 1,000,000: 0s. Last read position: chr7:259,852 INFO 2026-06-03 20:33:25 SinglePassSamProgram Processed 209,000,000 records. Elapsed time: 00:02:41s. Time for last 1,000,000: 0s. Last read position: chr7:2,527,146 INFO 2026-06-03 20:33:26 SinglePassSamProgram Processed 210,000,000 records. Elapsed time: 00:02:42s. Time for last 1,000,000: 0s. Last read position: chr7:5,376,200 INFO 2026-06-03 20:33:27 SinglePassSamProgram Processed 211,000,000 records. Elapsed time: 00:02:43s. Time for last 1,000,000: 0s. Last read position: chr7:5,528,506 INFO 2026-06-03 20:33:28 SinglePassSamProgram Processed 212,000,000 records. Elapsed time: 00:02:44s. Time for last 1,000,000: 0s. Last read position: chr7:6,402,333 INFO 2026-06-03 20:33:28 SinglePassSamProgram Processed 213,000,000 records. Elapsed time: 00:02:44s. Time for last 1,000,000: 0s. Last read position: chr7:23,611,414 INFO 2026-06-03 20:33:29 SinglePassSamProgram Processed 214,000,000 records. Elapsed time: 00:02:45s. Time for last 1,000,000: 0s. Last read position: chr7:32,996,254 INFO 2026-06-03 20:33:30 SinglePassSamProgram Processed 215,000,000 records. Elapsed time: 00:02:46s. Time for last 1,000,000: 0s. Last read position: chr7:44,104,582 INFO 2026-06-03 20:33:31 SinglePassSamProgram Processed 216,000,000 records. Elapsed time: 00:02:47s. Time for last 1,000,000: 0s. Last read position: chr7:44,701,585 INFO 2026-06-03 20:33:31 SinglePassSamProgram Processed 217,000,000 records. Elapsed time: 00:02:47s. Time for last 1,000,000: 0s. Last read position: chr7:55,156,611 INFO 2026-06-03 20:33:32 SinglePassSamProgram Processed 218,000,000 records. Elapsed time: 00:02:48s. Time for last 1,000,000: 0s. Last read position: chr7:72,940,663 INFO 2026-06-03 20:33:33 SinglePassSamProgram Processed 219,000,000 records. Elapsed time: 00:02:49s. Time for last 1,000,000: 0s. Last read position: chr7:73,831,774 INFO 2026-06-03 20:33:34 SinglePassSamProgram Processed 220,000,000 records. Elapsed time: 00:02:50s. Time for last 1,000,000: 0s. Last read position: chr7:75,421,640 INFO 2026-06-03 20:33:35 SinglePassSamProgram Processed 221,000,000 records. Elapsed time: 00:02:50s. Time for last 1,000,000: 0s. Last read position: chr7:76,618,192 INFO 2026-06-03 20:33:35 SinglePassSamProgram Processed 222,000,000 records. Elapsed time: 00:02:51s. Time for last 1,000,000: 0s. Last read position: chr7:92,134,267 INFO 2026-06-03 20:33:36 SinglePassSamProgram Processed 223,000,000 records. Elapsed time: 00:02:52s. Time for last 1,000,000: 0s. Last read position: chr7:94,411,098 INFO 2026-06-03 20:33:37 SinglePassSamProgram Processed 224,000,000 records. Elapsed time: 00:02:53s. Time for last 1,000,000: 0s. Last read position: chr7:94,430,265 INFO 2026-06-03 20:33:38 SinglePassSamProgram Processed 225,000,000 records. Elapsed time: 00:02:54s. Time for last 1,000,000: 0s. Last read position: chr7:99,459,218 INFO 2026-06-03 20:33:38 SinglePassSamProgram Processed 226,000,000 records. Elapsed time: 00:02:54s. Time for last 1,000,000: 0s. Last read position: chr7:100,602,394 INFO 2026-06-03 20:33:39 SinglePassSamProgram Processed 227,000,000 records. Elapsed time: 00:02:55s. Time for last 1,000,000: 0s. Last read position: chr7:100,992,741 INFO 2026-06-03 20:33:40 SinglePassSamProgram Processed 228,000,000 records. Elapsed time: 00:02:56s. Time for last 1,000,000: 0s. Last read position: chr7:100,997,913 INFO 2026-06-03 20:33:41 SinglePassSamProgram Processed 229,000,000 records. Elapsed time: 00:02:57s. Time for last 1,000,000: 0s. Last read position: chr7:101,001,934 INFO 2026-06-03 20:33:41 SinglePassSamProgram Processed 230,000,000 records. Elapsed time: 00:02:57s. Time for last 1,000,000: 0s. Last read position: chr7:101,039,873 INFO 2026-06-03 20:33:42 SinglePassSamProgram Processed 231,000,000 records. Elapsed time: 00:02:58s. Time for last 1,000,000: 0s. Last read position: chr7:102,348,558 INFO 2026-06-03 20:33:43 SinglePassSamProgram Processed 232,000,000 records. Elapsed time: 00:02:59s. Time for last 1,000,000: 0s. Last read position: chr7:105,607,815 INFO 2026-06-03 20:33:44 SinglePassSamProgram Processed 233,000,000 records. Elapsed time: 00:03:00s. Time for last 1,000,000: 0s. Last read position: chr7:116,700,200 INFO 2026-06-03 20:33:44 SinglePassSamProgram Processed 234,000,000 records. Elapsed time: 00:03:00s. Time for last 1,000,000: 0s. Last read position: chr7:127,887,954 INFO 2026-06-03 20:33:45 SinglePassSamProgram Processed 235,000,000 records. Elapsed time: 00:03:01s. Time for last 1,000,000: 0s. Last read position: chr7:130,500,460 INFO 2026-06-03 20:33:46 SinglePassSamProgram Processed 236,000,000 records. Elapsed time: 00:03:02s. Time for last 1,000,000: 0s. Last read position: chr7:137,928,198 INFO 2026-06-03 20:33:47 SinglePassSamProgram Processed 237,000,000 records. Elapsed time: 00:03:03s. Time for last 1,000,000: 0s. Last read position: chr7:142,801,073 INFO 2026-06-03 20:33:47 SinglePassSamProgram Processed 238,000,000 records. Elapsed time: 00:03:03s. Time for last 1,000,000: 0s. Last read position: chr7:149,005,365 INFO 2026-06-03 20:33:48 SinglePassSamProgram Processed 239,000,000 records. Elapsed time: 00:03:04s. Time for last 1,000,000: 0s. Last read position: chr7:151,067,950 INFO 2026-06-03 20:33:49 SinglePassSamProgram Processed 240,000,000 records. Elapsed time: 00:03:05s. Time for last 1,000,000: 0s. Last read position: chr7:155,745,389 INFO 2026-06-03 20:33:50 SinglePassSamProgram Processed 241,000,000 records. Elapsed time: 00:03:06s. Time for last 1,000,000: 0s. Last read position: chr8:11,845,181 INFO 2026-06-03 20:33:51 SinglePassSamProgram Processed 242,000,000 records. Elapsed time: 00:03:06s. Time for last 1,000,000: 0s. Last read position: chr8:22,194,155 INFO 2026-06-03 20:33:51 SinglePassSamProgram Processed 243,000,000 records. Elapsed time: 00:03:07s. Time for last 1,000,000: 0s. Last read position: chr8:26,338,925 INFO 2026-06-03 20:33:52 SinglePassSamProgram Processed 244,000,000 records. Elapsed time: 00:03:08s. Time for last 1,000,000: 0s. Last read position: chr8:37,698,131 INFO 2026-06-03 20:33:53 SinglePassSamProgram Processed 245,000,000 records. Elapsed time: 00:03:09s. Time for last 1,000,000: 0s. Last read position: chr8:38,840,255 INFO 2026-06-03 20:33:54 SinglePassSamProgram Processed 246,000,000 records. Elapsed time: 00:03:10s. Time for last 1,000,000: 0s. Last read position: chr8:47,737,871 INFO 2026-06-03 20:33:54 SinglePassSamProgram Processed 247,000,000 records. Elapsed time: 00:03:10s. Time for last 1,000,000: 0s. Last read position: chr8:56,073,132 INFO 2026-06-03 20:33:55 SinglePassSamProgram Processed 248,000,000 records. Elapsed time: 00:03:11s. Time for last 1,000,000: 0s. Last read position: chr8:67,227,137 INFO 2026-06-03 20:33:56 SinglePassSamProgram Processed 249,000,000 records. Elapsed time: 00:03:12s. Time for last 1,000,000: 0s. Last read position: chr8:74,244,831 INFO 2026-06-03 20:33:57 SinglePassSamProgram Processed 250,000,000 records. Elapsed time: 00:03:13s. Time for last 1,000,000: 0s. Last read position: chr8:94,189,238 INFO 2026-06-03 20:33:57 SinglePassSamProgram Processed 251,000,000 records. Elapsed time: 00:03:13s. Time for last 1,000,000: 0s. Last read position: chr8:100,703,283 INFO 2026-06-03 20:33:58 SinglePassSamProgram Processed 252,000,000 records. Elapsed time: 00:03:14s. Time for last 1,000,000: 0s. Last read position: chr8:102,650,181 INFO 2026-06-03 20:33:59 SinglePassSamProgram Processed 253,000,000 records. Elapsed time: 00:03:15s. Time for last 1,000,000: 0s. Last read position: chr8:119,617,049 INFO 2026-06-03 20:34:00 SinglePassSamProgram Processed 254,000,000 records. Elapsed time: 00:03:16s. Time for last 1,000,000: 0s. Last read position: chr8:127,736,250 INFO 2026-06-03 20:34:01 SinglePassSamProgram Processed 255,000,000 records. Elapsed time: 00:03:17s. Time for last 1,000,000: 0s. Last read position: chr8:133,408,198 INFO 2026-06-03 20:34:01 SinglePassSamProgram Processed 256,000,000 records. Elapsed time: 00:03:17s. Time for last 1,000,000: 0s. Last read position: chr8:143,567,413 INFO 2026-06-03 20:34:02 SinglePassSamProgram Processed 257,000,000 records. Elapsed time: 00:03:18s. Time for last 1,000,000: 0s. Last read position: chr8:143,730,330 INFO 2026-06-03 20:34:03 SinglePassSamProgram Processed 258,000,000 records. Elapsed time: 00:03:19s. Time for last 1,000,000: 0s. Last read position: chr8:143,858,995 INFO 2026-06-03 20:34:04 SinglePassSamProgram Processed 259,000,000 records. Elapsed time: 00:03:20s. Time for last 1,000,000: 0s. Last read position: chr8:143,861,289 INFO 2026-06-03 20:34:04 SinglePassSamProgram Processed 260,000,000 records. Elapsed time: 00:03:20s. Time for last 1,000,000: 0s. Last read position: chr8:143,863,116 INFO 2026-06-03 20:34:05 SinglePassSamProgram Processed 261,000,000 records. Elapsed time: 00:03:21s. Time for last 1,000,000: 0s. Last read position: chr8:143,865,437 INFO 2026-06-03 20:34:06 SinglePassSamProgram Processed 262,000,000 records. Elapsed time: 00:03:22s. Time for last 1,000,000: 0s. Last read position: chr8:143,872,745 INFO 2026-06-03 20:34:06 SinglePassSamProgram Processed 263,000,000 records. Elapsed time: 00:03:22s. Time for last 1,000,000: 0s. Last read position: chr8:143,921,363 INFO 2026-06-03 20:34:07 SinglePassSamProgram Processed 264,000,000 records. Elapsed time: 00:03:23s. Time for last 1,000,000: 0s. Last read position: chr8:143,930,047 INFO 2026-06-03 20:34:08 SinglePassSamProgram Processed 265,000,000 records. Elapsed time: 00:03:24s. Time for last 1,000,000: 0s. Last read position: chr8:144,096,238 INFO 2026-06-03 20:34:09 SinglePassSamProgram Processed 266,000,000 records. Elapsed time: 00:03:25s. Time for last 1,000,000: 0s. Last read position: chr8:144,390,737 INFO 2026-06-03 20:34:09 SinglePassSamProgram Processed 267,000,000 records. Elapsed time: 00:03:25s. Time for last 1,000,000: 0s. Last read position: chr8:144,547,702 INFO 2026-06-03 20:34:10 SinglePassSamProgram Processed 268,000,000 records. Elapsed time: 00:03:26s. Time for last 1,000,000: 0s. Last read position: chr9:5,832,969 INFO 2026-06-03 20:34:11 SinglePassSamProgram Processed 269,000,000 records. Elapsed time: 00:03:27s. Time for last 1,000,000: 0s. Last read position: chr9:20,978,341 INFO 2026-06-03 20:34:12 SinglePassSamProgram Processed 270,000,000 records. Elapsed time: 00:03:28s. Time for last 1,000,000: 0s. Last read position: chr9:34,637,047 INFO 2026-06-03 20:34:13 SinglePassSamProgram Processed 271,000,000 records. Elapsed time: 00:03:29s. Time for last 1,000,000: 0s. Last read position: chr9:35,704,086 INFO 2026-06-03 20:34:13 SinglePassSamProgram Processed 272,000,000 records. Elapsed time: 00:03:29s. Time for last 1,000,000: 0s. Last read position: chr9:38,395,901 INFO 2026-06-03 20:34:14 SinglePassSamProgram Processed 273,000,000 records. Elapsed time: 00:03:30s. Time for last 1,000,000: 0s. Last read position: chr9:73,162,818 INFO 2026-06-03 20:34:15 SinglePassSamProgram Processed 274,000,000 records. Elapsed time: 00:03:31s. Time for last 1,000,000: 0s. Last read position: chr9:86,353,142 INFO 2026-06-03 20:34:16 SinglePassSamProgram Processed 275,000,000 records. Elapsed time: 00:03:32s. Time for last 1,000,000: 0s. Last read position: chr9:93,317,495 INFO 2026-06-03 20:34:16 SinglePassSamProgram Processed 276,000,000 records. Elapsed time: 00:03:32s. Time for last 1,000,000: 0s. Last read position: chr9:98,944,161 INFO 2026-06-03 20:34:17 SinglePassSamProgram Processed 277,000,000 records. Elapsed time: 00:03:33s. Time for last 1,000,000: 0s. Last read position: chr9:107,487,817 INFO 2026-06-03 20:34:18 SinglePassSamProgram Processed 278,000,000 records. Elapsed time: 00:03:34s. Time for last 1,000,000: 0s. Last read position: chr9:114,167,761 INFO 2026-06-03 20:34:19 SinglePassSamProgram Processed 279,000,000 records. Elapsed time: 00:03:35s. Time for last 1,000,000: 0s. Last read position: chr9:116,698,039 INFO 2026-06-03 20:34:20 SinglePassSamProgram Processed 280,000,000 records. Elapsed time: 00:03:35s. Time for last 1,000,000: 0s. Last read position: chr9:123,179,032 INFO 2026-06-03 20:34:20 SinglePassSamProgram Processed 281,000,000 records. Elapsed time: 00:03:36s. Time for last 1,000,000: 0s. Last read position: chr9:127,527,296 INFO 2026-06-03 20:34:21 SinglePassSamProgram Processed 282,000,000 records. Elapsed time: 00:03:37s. Time for last 1,000,000: 0s. Last read position: chr9:128,420,875 INFO 2026-06-03 20:34:22 SinglePassSamProgram Processed 283,000,000 records. Elapsed time: 00:03:38s. Time for last 1,000,000: 0s. Last read position: chr9:129,009,821 INFO 2026-06-03 20:34:23 SinglePassSamProgram Processed 284,000,000 records. Elapsed time: 00:03:39s. Time for last 1,000,000: 0s. Last read position: chr9:130,884,169 INFO 2026-06-03 20:34:23 SinglePassSamProgram Processed 285,000,000 records. Elapsed time: 00:03:39s. Time for last 1,000,000: 0s. Last read position: chr9:133,050,921 INFO 2026-06-03 20:34:24 SinglePassSamProgram Processed 286,000,000 records. Elapsed time: 00:03:40s. Time for last 1,000,000: 0s. Last read position: chr9:134,750,870 INFO 2026-06-03 20:34:25 SinglePassSamProgram Processed 287,000,000 records. Elapsed time: 00:03:41s. Time for last 1,000,000: 0s. Last read position: chr9:136,050,174 INFO 2026-06-03 20:34:26 SinglePassSamProgram Processed 288,000,000 records. Elapsed time: 00:03:42s. Time for last 1,000,000: 0s. Last read position: chr9:136,672,283 INFO 2026-06-03 20:34:26 SinglePassSamProgram Processed 289,000,000 records. Elapsed time: 00:03:42s. Time for last 1,000,000: 0s. Last read position: chr9:137,108,426 INFO 2026-06-03 20:34:27 SinglePassSamProgram Processed 290,000,000 records. Elapsed time: 00:03:43s. Time for last 1,000,000: 0s. Last read position: chr9:137,813,361 INFO 2026-06-03 20:34:28 SinglePassSamProgram Processed 291,000,000 records. Elapsed time: 00:03:44s. Time for last 1,000,000: 0s. Last read position: chr10:5,895,070 INFO 2026-06-03 20:34:29 SinglePassSamProgram Processed 292,000,000 records. Elapsed time: 00:03:45s. Time for last 1,000,000: 0s. Last read position: chr10:16,782,073 INFO 2026-06-03 20:34:30 SinglePassSamProgram Processed 293,000,000 records. Elapsed time: 00:03:45s. Time for last 1,000,000: 0s. Last read position: chr10:24,607,436 INFO 2026-06-03 20:34:30 SinglePassSamProgram Processed 294,000,000 records. Elapsed time: 00:03:46s. Time for last 1,000,000: 0s. Last read position: chr10:32,017,273 INFO 2026-06-03 20:34:31 SinglePassSamProgram Processed 295,000,000 records. Elapsed time: 00:03:47s. Time for last 1,000,000: 0s. Last read position: chr10:32,928,188 INFO 2026-06-03 20:34:32 SinglePassSamProgram Processed 296,000,000 records. Elapsed time: 00:03:48s. Time for last 1,000,000: 0s. Last read position: chr10:45,826,436 INFO 2026-06-03 20:34:33 SinglePassSamProgram Processed 297,000,000 records. Elapsed time: 00:03:49s. Time for last 1,000,000: 0s. Last read position: chr10:50,343,475 INFO 2026-06-03 20:34:33 SinglePassSamProgram Processed 298,000,000 records. Elapsed time: 00:03:49s. Time for last 1,000,000: 0s. Last read position: chr10:68,396,801 INFO 2026-06-03 20:34:34 SinglePassSamProgram Processed 299,000,000 records. Elapsed time: 00:03:50s. Time for last 1,000,000: 0s. Last read position: chr10:71,290,947 INFO 2026-06-03 20:34:35 SinglePassSamProgram Processed 300,000,000 records. Elapsed time: 00:03:51s. Time for last 1,000,000: 0s. Last read position: chr10:73,798,013 INFO 2026-06-03 20:34:36 SinglePassSamProgram Processed 301,000,000 records. Elapsed time: 00:03:52s. Time for last 1,000,000: 0s. Last read position: chr10:78,037,213 INFO 2026-06-03 20:34:36 SinglePassSamProgram Processed 302,000,000 records. Elapsed time: 00:03:52s. Time for last 1,000,000: 0s. Last read position: chr10:87,741,270 INFO 2026-06-03 20:34:37 SinglePassSamProgram Processed 303,000,000 records. Elapsed time: 00:03:53s. Time for last 1,000,000: 0s. Last read position: chr10:94,246,021 INFO 2026-06-03 20:34:38 SinglePassSamProgram Processed 304,000,000 records. Elapsed time: 00:03:54s. Time for last 1,000,000: 0s. Last read position: chr10:97,432,492 INFO 2026-06-03 20:34:39 SinglePassSamProgram Processed 305,000,000 records. Elapsed time: 00:03:55s. Time for last 1,000,000: 0s. Last read position: chr10:101,003,561 INFO 2026-06-03 20:34:40 SinglePassSamProgram Processed 306,000,000 records. Elapsed time: 00:03:55s. Time for last 1,000,000: 0s. Last read position: chr10:102,657,151 INFO 2026-06-03 20:34:40 SinglePassSamProgram Processed 307,000,000 records. Elapsed time: 00:03:56s. Time for last 1,000,000: 0s. Last read position: chr10:110,952,004 INFO 2026-06-03 20:34:41 SinglePassSamProgram Processed 308,000,000 records. Elapsed time: 00:03:57s. Time for last 1,000,000: 0s. Last read position: chr10:119,453,177 INFO 2026-06-03 20:34:42 SinglePassSamProgram Processed 309,000,000 records. Elapsed time: 00:03:58s. Time for last 1,000,000: 0s. Last read position: chr10:125,026,306 INFO 2026-06-03 20:34:43 SinglePassSamProgram Processed 310,000,000 records. Elapsed time: 00:03:59s. Time for last 1,000,000: 0s. Last read position: chr10:133,350,109 INFO 2026-06-03 20:34:43 SinglePassSamProgram Processed 311,000,000 records. Elapsed time: 00:03:59s. Time for last 1,000,000: 0s. Last read position: chr11:319,968 INFO 2026-06-03 20:34:44 SinglePassSamProgram Processed 312,000,000 records. Elapsed time: 00:04:00s. Time for last 1,000,000: 0s. Last read position: chr11:720,725 INFO 2026-06-03 20:34:45 SinglePassSamProgram Processed 313,000,000 records. Elapsed time: 00:04:01s. Time for last 1,000,000: 0s. Last read position: chr11:1,242,439 INFO 2026-06-03 20:34:46 SinglePassSamProgram Processed 314,000,000 records. Elapsed time: 00:04:02s. Time for last 1,000,000: 0s. Last read position: chr11:1,565,612 INFO 2026-06-03 20:34:46 SinglePassSamProgram Processed 315,000,000 records. Elapsed time: 00:04:02s. Time for last 1,000,000: 0s. Last read position: chr11:3,104,323 INFO 2026-06-03 20:34:47 SinglePassSamProgram Processed 316,000,000 records. Elapsed time: 00:04:03s. Time for last 1,000,000: 0s. Last read position: chr11:6,623,431 INFO 2026-06-03 20:34:48 SinglePassSamProgram Processed 317,000,000 records. Elapsed time: 00:04:04s. Time for last 1,000,000: 0s. Last read position: chr11:10,775,251 INFO 2026-06-03 20:34:49 SinglePassSamProgram Processed 318,000,000 records. Elapsed time: 00:04:05s. Time for last 1,000,000: 0s. Last read position: chr11:16,789,776 INFO 2026-06-03 20:34:49 SinglePassSamProgram Processed 319,000,000 records. Elapsed time: 00:04:05s. Time for last 1,000,000: 0s. Last read position: chr11:33,141,888 INFO 2026-06-03 20:34:50 SinglePassSamProgram Processed 320,000,000 records. Elapsed time: 00:04:06s. Time for last 1,000,000: 0s. Last read position: chr11:43,798,399 INFO 2026-06-03 20:34:51 SinglePassSamProgram Processed 321,000,000 records. Elapsed time: 00:04:07s. Time for last 1,000,000: 0s. Last read position: chr11:46,751,128 INFO 2026-06-03 20:34:52 SinglePassSamProgram Processed 322,000,000 records. Elapsed time: 00:04:08s. Time for last 1,000,000: 0s. Last read position: chr11:57,310,203 INFO 2026-06-03 20:34:53 SinglePassSamProgram Processed 323,000,000 records. Elapsed time: 00:04:08s. Time for last 1,000,000: 0s. Last read position: chr11:59,152,186 INFO 2026-06-03 20:34:53 SinglePassSamProgram Processed 324,000,000 records. Elapsed time: 00:04:09s. Time for last 1,000,000: 0s. Last read position: chr11:61,780,230 INFO 2026-06-03 20:34:54 SinglePassSamProgram Processed 325,000,000 records. Elapsed time: 00:04:10s. Time for last 1,000,000: 0s. Last read position: chr11:62,525,594 INFO 2026-06-03 20:34:55 SinglePassSamProgram Processed 326,000,000 records. Elapsed time: 00:04:11s. Time for last 1,000,000: 0s. Last read position: chr11:62,608,617 INFO 2026-06-03 20:34:56 SinglePassSamProgram Processed 327,000,000 records. Elapsed time: 00:04:12s. Time for last 1,000,000: 0s. Last read position: chr11:63,839,421 INFO 2026-06-03 20:34:56 SinglePassSamProgram Processed 328,000,000 records. Elapsed time: 00:04:12s. Time for last 1,000,000: 0s. Last read position: chr11:64,344,027 INFO 2026-06-03 20:34:57 SinglePassSamProgram Processed 329,000,000 records. Elapsed time: 00:04:13s. Time for last 1,000,000: 0s. Last read position: chr11:65,121,532 INFO 2026-06-03 20:34:58 SinglePassSamProgram Processed 330,000,000 records. Elapsed time: 00:04:14s. Time for last 1,000,000: 0s. Last read position: chr11:65,589,777 INFO 2026-06-03 20:34:59 SinglePassSamProgram Processed 331,000,000 records. Elapsed time: 00:04:15s. Time for last 1,000,000: 0s. Last read position: chr11:65,866,636 INFO 2026-06-03 20:34:59 SinglePassSamProgram Processed 332,000,000 records. Elapsed time: 00:04:15s. Time for last 1,000,000: 0s. Last read position: chr11:66,543,822 INFO 2026-06-03 20:35:00 SinglePassSamProgram Processed 333,000,000 records. Elapsed time: 00:04:16s. Time for last 1,000,000: 0s. Last read position: chr11:67,439,799 INFO 2026-06-03 20:35:01 SinglePassSamProgram Processed 334,000,000 records. Elapsed time: 00:04:17s. Time for last 1,000,000: 0s. Last read position: chr11:68,548,100 INFO 2026-06-03 20:35:02 SinglePassSamProgram Processed 335,000,000 records. Elapsed time: 00:04:18s. Time for last 1,000,000: 0s. Last read position: chr11:70,429,139 INFO 2026-06-03 20:35:03 SinglePassSamProgram Processed 336,000,000 records. Elapsed time: 00:04:18s. Time for last 1,000,000: 0s. Last read position: chr11:72,712,558 INFO 2026-06-03 20:35:03 SinglePassSamProgram Processed 337,000,000 records. Elapsed time: 00:04:19s. Time for last 1,000,000: 0s. Last read position: chr11:75,456,757 INFO 2026-06-03 20:35:04 SinglePassSamProgram Processed 338,000,000 records. Elapsed time: 00:04:20s. Time for last 1,000,000: 0s. Last read position: chr11:84,623,268 INFO 2026-06-03 20:35:05 SinglePassSamProgram Processed 339,000,000 records. Elapsed time: 00:04:21s. Time for last 1,000,000: 0s. Last read position: chr11:102,110,888 INFO 2026-06-03 20:35:06 SinglePassSamProgram Processed 340,000,000 records. Elapsed time: 00:04:22s. Time for last 1,000,000: 0s. Last read position: chr11:111,354,435 INFO 2026-06-03 20:35:06 SinglePassSamProgram Processed 341,000,000 records. Elapsed time: 00:04:22s. Time for last 1,000,000: 0s. Last read position: chr11:117,279,872 INFO 2026-06-03 20:35:07 SinglePassSamProgram Processed 342,000,000 records. Elapsed time: 00:04:23s. Time for last 1,000,000: 0s. Last read position: chr11:118,898,822 INFO 2026-06-03 20:35:08 SinglePassSamProgram Processed 343,000,000 records. Elapsed time: 00:04:24s. Time for last 1,000,000: 0s. Last read position: chr11:120,137,609 INFO 2026-06-03 20:35:09 SinglePassSamProgram Processed 344,000,000 records. Elapsed time: 00:04:25s. Time for last 1,000,000: 0s. Last read position: chr11:125,578,246 INFO 2026-06-03 20:35:09 SinglePassSamProgram Processed 345,000,000 records. Elapsed time: 00:04:25s. Time for last 1,000,000: 0s. Last read position: chr11:130,199,995 INFO 2026-06-03 20:35:10 SinglePassSamProgram Processed 346,000,000 records. Elapsed time: 00:04:26s. Time for last 1,000,000: 0s. Last read position: chr12:2,651,659 INFO 2026-06-03 20:35:11 SinglePassSamProgram Processed 347,000,000 records. Elapsed time: 00:04:27s. Time for last 1,000,000: 0s. Last read position: chr12:6,388,358 INFO 2026-06-03 20:35:12 SinglePassSamProgram Processed 348,000,000 records. Elapsed time: 00:04:28s. Time for last 1,000,000: 0s. Last read position: chr12:6,868,853 INFO 2026-06-03 20:35:13 SinglePassSamProgram Processed 349,000,000 records. Elapsed time: 00:04:28s. Time for last 1,000,000: 0s. Last read position: chr12:7,091,578 INFO 2026-06-03 20:35:13 SinglePassSamProgram Processed 350,000,000 records. Elapsed time: 00:04:29s. Time for last 1,000,000: 0s. Last read position: chr12:9,239,953 INFO 2026-06-03 20:35:14 SinglePassSamProgram Processed 351,000,000 records. Elapsed time: 00:04:30s. Time for last 1,000,000: 0s. Last read position: chr12:13,213,623 INFO 2026-06-03 20:35:15 SinglePassSamProgram Processed 352,000,000 records. Elapsed time: 00:04:31s. Time for last 1,000,000: 0s. Last read position: chr12:26,483,800 INFO 2026-06-03 20:35:16 SinglePassSamProgram Processed 353,000,000 records. Elapsed time: 00:04:32s. Time for last 1,000,000: 0s. Last read position: chr12:45,348,036 INFO 2026-06-03 20:35:16 SinglePassSamProgram Processed 354,000,000 records. Elapsed time: 00:04:32s. Time for last 1,000,000: 0s. Last read position: chr12:49,026,383 INFO 2026-06-03 20:35:17 SinglePassSamProgram Processed 355,000,000 records. Elapsed time: 00:04:33s. Time for last 1,000,000: 0s. Last read position: chr12:49,186,349 INFO 2026-06-03 20:35:18 SinglePassSamProgram Processed 356,000,000 records. Elapsed time: 00:04:34s. Time for last 1,000,000: 0s. Last read position: chr12:50,925,078 INFO 2026-06-03 20:35:19 SinglePassSamProgram Processed 357,000,000 records. Elapsed time: 00:04:35s. Time for last 1,000,000: 0s. Last read position: chr12:52,897,521 INFO 2026-06-03 20:35:19 SinglePassSamProgram Processed 358,000,000 records. Elapsed time: 00:04:35s. Time for last 1,000,000: 0s. Last read position: chr12:53,171,354 INFO 2026-06-03 20:35:20 SinglePassSamProgram Processed 359,000,000 records. Elapsed time: 00:04:36s. Time for last 1,000,000: 0s. Last read position: chr12:54,281,896 INFO 2026-06-03 20:35:21 SinglePassSamProgram Processed 360,000,000 records. Elapsed time: 00:04:37s. Time for last 1,000,000: 0s. Last read position: chr12:55,837,873 INFO 2026-06-03 20:35:22 SinglePassSamProgram Processed 361,000,000 records. Elapsed time: 00:04:38s. Time for last 1,000,000: 0s. Last read position: chr12:56,225,370 INFO 2026-06-03 20:35:22 SinglePassSamProgram Processed 362,000,000 records. Elapsed time: 00:04:38s. Time for last 1,000,000: 0s. Last read position: chr12:56,712,840 INFO 2026-06-03 20:35:23 SinglePassSamProgram Processed 363,000,000 records. Elapsed time: 00:04:39s. Time for last 1,000,000: 0s. Last read position: chr12:57,108,179 INFO 2026-06-03 20:35:24 SinglePassSamProgram Processed 364,000,000 records. Elapsed time: 00:04:40s. Time for last 1,000,000: 0s. Last read position: chr12:57,205,124 INFO 2026-06-03 20:35:25 SinglePassSamProgram Processed 365,000,000 records. Elapsed time: 00:04:41s. Time for last 1,000,000: 0s. Last read position: chr12:57,751,281 INFO 2026-06-03 20:35:26 SinglePassSamProgram Processed 366,000,000 records. Elapsed time: 00:04:41s. Time for last 1,000,000: 0s. Last read position: chr12:69,260,098 INFO 2026-06-03 20:35:26 SinglePassSamProgram Processed 367,000,000 records. Elapsed time: 00:04:42s. Time for last 1,000,000: 0s. Last read position: chr12:79,775,935 INFO 2026-06-03 20:35:27 SinglePassSamProgram Processed 368,000,000 records. Elapsed time: 00:04:43s. Time for last 1,000,000: 0s. Last read position: chr12:95,092,782 INFO 2026-06-03 20:35:28 SinglePassSamProgram Processed 369,000,000 records. Elapsed time: 00:04:44s. Time for last 1,000,000: 0s. Last read position: chr12:103,947,669 INFO 2026-06-03 20:35:29 SinglePassSamProgram Processed 370,000,000 records. Elapsed time: 00:04:45s. Time for last 1,000,000: 0s. Last read position: chr12:109,237,264 INFO 2026-06-03 20:35:29 SinglePassSamProgram Processed 371,000,000 records. Elapsed time: 00:04:45s. Time for last 1,000,000: 0s. Last read position: chr12:112,022,540 INFO 2026-06-03 20:35:30 SinglePassSamProgram Processed 372,000,000 records. Elapsed time: 00:04:46s. Time for last 1,000,000: 0s. Last read position: chr12:113,434,203 INFO 2026-06-03 20:35:31 SinglePassSamProgram Processed 373,000,000 records. Elapsed time: 00:04:47s. Time for last 1,000,000: 0s. Last read position: chr12:120,199,188 INFO 2026-06-03 20:35:32 SinglePassSamProgram Processed 374,000,000 records. Elapsed time: 00:04:48s. Time for last 1,000,000: 0s. Last read position: chr12:121,903,059 INFO 2026-06-03 20:35:32 SinglePassSamProgram Processed 375,000,000 records. Elapsed time: 00:04:48s. Time for last 1,000,000: 0s. Last read position: chr12:123,630,457 INFO 2026-06-03 20:35:33 SinglePassSamProgram Processed 376,000,000 records. Elapsed time: 00:04:49s. Time for last 1,000,000: 0s. Last read position: chr12:130,478,911 INFO 2026-06-03 20:35:34 SinglePassSamProgram Processed 377,000,000 records. Elapsed time: 00:04:50s. Time for last 1,000,000: 0s. Last read position: chr12:132,754,787 INFO 2026-06-03 20:35:35 SinglePassSamProgram Processed 378,000,000 records. Elapsed time: 00:04:51s. Time for last 1,000,000: 0s. Last read position: chr13:21,176,994 INFO 2026-06-03 20:35:36 SinglePassSamProgram Processed 379,000,000 records. Elapsed time: 00:04:51s. Time for last 1,000,000: 0s. Last read position: chr13:30,461,331 INFO 2026-06-03 20:35:36 SinglePassSamProgram Processed 380,000,000 records. Elapsed time: 00:04:52s. Time for last 1,000,000: 0s. Last read position: chr13:39,014,177 INFO 2026-06-03 20:35:37 SinglePassSamProgram Processed 381,000,000 records. Elapsed time: 00:04:53s. Time for last 1,000,000: 0s. Last read position: chr13:45,340,167 INFO 2026-06-03 20:35:38 SinglePassSamProgram Processed 382,000,000 records. Elapsed time: 00:04:54s. Time for last 1,000,000: 0s. Last read position: chr13:52,417,061 INFO 2026-06-03 20:35:39 SinglePassSamProgram Processed 383,000,000 records. Elapsed time: 00:04:54s. Time for last 1,000,000: 0s. Last read position: chr13:75,286,910 INFO 2026-06-03 20:35:39 SinglePassSamProgram Processed 384,000,000 records. Elapsed time: 00:04:55s. Time for last 1,000,000: 0s. Last read position: chr13:97,997,591 INFO 2026-06-03 20:35:40 SinglePassSamProgram Processed 385,000,000 records. Elapsed time: 00:04:56s. Time for last 1,000,000: 0s. Last read position: chr13:109,784,318 INFO 2026-06-03 20:35:41 SinglePassSamProgram Processed 386,000,000 records. Elapsed time: 00:04:57s. Time for last 1,000,000: 0s. Last read position: chr13:110,357,535 INFO 2026-06-03 20:35:42 SinglePassSamProgram Processed 387,000,000 records. Elapsed time: 00:04:58s. Time for last 1,000,000: 0s. Last read position: chr13:110,914,830 INFO 2026-06-03 20:35:42 SinglePassSamProgram Processed 388,000,000 records. Elapsed time: 00:04:58s. Time for last 1,000,000: 0s. Last read position: chr14:20,383,874 INFO 2026-06-03 20:35:43 SinglePassSamProgram Processed 389,000,000 records. Elapsed time: 00:04:59s. Time for last 1,000,000: 0s. Last read position: chr14:22,771,056 INFO 2026-06-03 20:35:44 SinglePassSamProgram Processed 390,000,000 records. Elapsed time: 00:05:00s. Time for last 1,000,000: 0s. Last read position: chr14:23,324,154 INFO 2026-06-03 20:35:45 SinglePassSamProgram Processed 391,000,000 records. Elapsed time: 00:05:01s. Time for last 1,000,000: 0s. Last read position: chr14:24,299,941 INFO 2026-06-03 20:35:46 SinglePassSamProgram Processed 392,000,000 records. Elapsed time: 00:05:01s. Time for last 1,000,000: 0s. Last read position: chr14:35,308,963 INFO 2026-06-03 20:35:46 SinglePassSamProgram Processed 393,000,000 records. Elapsed time: 00:05:02s. Time for last 1,000,000: 0s. Last read position: chr14:49,862,597 INFO 2026-06-03 20:35:47 SinglePassSamProgram Processed 394,000,000 records. Elapsed time: 00:05:03s. Time for last 1,000,000: 0s. Last read position: chr14:55,138,306 INFO 2026-06-03 20:35:48 SinglePassSamProgram Processed 395,000,000 records. Elapsed time: 00:05:04s. Time for last 1,000,000: 0s. Last read position: chr14:64,052,818 INFO 2026-06-03 20:35:49 SinglePassSamProgram Processed 396,000,000 records. Elapsed time: 00:05:05s. Time for last 1,000,000: 0s. Last read position: chr14:68,789,841 INFO 2026-06-03 20:35:49 SinglePassSamProgram Processed 397,000,000 records. Elapsed time: 00:05:05s. Time for last 1,000,000: 0s. Last read position: chr14:71,672,431 INFO 2026-06-03 20:35:50 SinglePassSamProgram Processed 398,000,000 records. Elapsed time: 00:05:06s. Time for last 1,000,000: 0s. Last read position: chr14:74,809,481 INFO 2026-06-03 20:35:51 SinglePassSamProgram Processed 399,000,000 records. Elapsed time: 00:05:07s. Time for last 1,000,000: 0s. Last read position: chr14:77,616,502 INFO 2026-06-03 20:35:52 SinglePassSamProgram Processed 400,000,000 records. Elapsed time: 00:05:08s. Time for last 1,000,000: 0s. Last read position: chr14:92,709,704 INFO 2026-06-03 20:35:52 SinglePassSamProgram Processed 401,000,000 records. Elapsed time: 00:05:08s. Time for last 1,000,000: 0s. Last read position: chr14:99,515,316 INFO 2026-06-03 20:35:53 SinglePassSamProgram Processed 402,000,000 records. Elapsed time: 00:05:09s. Time for last 1,000,000: 0s. Last read position: chr14:102,049,522 INFO 2026-06-03 20:35:54 SinglePassSamProgram Processed 403,000,000 records. Elapsed time: 00:05:10s. Time for last 1,000,000: 0s. Last read position: chr14:103,685,584 INFO 2026-06-03 20:35:55 SinglePassSamProgram Processed 404,000,000 records. Elapsed time: 00:05:11s. Time for last 1,000,000: 0s. Last read position: chr14:104,942,974 INFO 2026-06-03 20:35:55 SinglePassSamProgram Processed 405,000,000 records. Elapsed time: 00:05:11s. Time for last 1,000,000: 0s. Last read position: chr14:105,051,226 INFO 2026-06-03 20:35:56 SinglePassSamProgram Processed 406,000,000 records. Elapsed time: 00:05:12s. Time for last 1,000,000: 0s. Last read position: chr14:105,643,183 INFO 2026-06-03 20:35:57 SinglePassSamProgram Processed 407,000,000 records. Elapsed time: 00:05:13s. Time for last 1,000,000: 0s. Last read position: chr14:105,707,386 INFO 2026-06-03 20:35:58 SinglePassSamProgram Processed 408,000,000 records. Elapsed time: 00:05:14s. Time for last 1,000,000: 0s. Last read position: chr14:105,741,585 INFO 2026-06-03 20:35:58 SinglePassSamProgram Processed 409,000,000 records. Elapsed time: 00:05:14s. Time for last 1,000,000: 0s. Last read position: chr14:105,771,112 INFO 2026-06-03 20:35:59 SinglePassSamProgram Processed 410,000,000 records. Elapsed time: 00:05:15s. Time for last 1,000,000: 0s. Last read position: chr15:28,229,529 INFO 2026-06-03 20:36:00 SinglePassSamProgram Processed 411,000,000 records. Elapsed time: 00:05:16s. Time for last 1,000,000: 0s. Last read position: chr15:32,732,126 INFO 2026-06-03 20:36:01 SinglePassSamProgram Processed 412,000,000 records. Elapsed time: 00:05:17s. Time for last 1,000,000: 0s. Last read position: chr15:39,589,059 INFO 2026-06-03 20:36:01 SinglePassSamProgram Processed 413,000,000 records. Elapsed time: 00:05:17s. Time for last 1,000,000: 0s. Last read position: chr15:41,092,067 INFO 2026-06-03 20:36:02 SinglePassSamProgram Processed 414,000,000 records. Elapsed time: 00:05:18s. Time for last 1,000,000: 0s. Last read position: chr15:42,733,141 INFO 2026-06-03 20:36:03 SinglePassSamProgram Processed 415,000,000 records. Elapsed time: 00:05:19s. Time for last 1,000,000: 0s. Last read position: chr15:43,793,052 INFO 2026-06-03 20:36:04 SinglePassSamProgram Processed 416,000,000 records. Elapsed time: 00:05:20s. Time for last 1,000,000: 0s. Last read position: chr15:48,490,040 INFO 2026-06-03 20:36:05 SinglePassSamProgram Processed 417,000,000 records. Elapsed time: 00:05:20s. Time for last 1,000,000: 0s. Last read position: chr15:56,394,739 INFO 2026-06-03 20:36:05 SinglePassSamProgram Processed 418,000,000 records. Elapsed time: 00:05:21s. Time for last 1,000,000: 0s. Last read position: chr15:60,355,980 INFO 2026-06-03 20:36:06 SinglePassSamProgram Processed 419,000,000 records. Elapsed time: 00:05:22s. Time for last 1,000,000: 0s. Last read position: chr15:63,775,222 INFO 2026-06-03 20:36:07 SinglePassSamProgram Processed 420,000,000 records. Elapsed time: 00:05:23s. Time for last 1,000,000: 0s. Last read position: chr15:66,503,398 INFO 2026-06-03 20:36:08 SinglePassSamProgram Processed 421,000,000 records. Elapsed time: 00:05:24s. Time for last 1,000,000: 0s. Last read position: chr15:72,209,798 INFO 2026-06-03 20:36:08 SinglePassSamProgram Processed 422,000,000 records. Elapsed time: 00:05:24s. Time for last 1,000,000: 0s. Last read position: chr15:74,035,592 INFO 2026-06-03 20:36:09 SinglePassSamProgram Processed 423,000,000 records. Elapsed time: 00:05:25s. Time for last 1,000,000: 0s. Last read position: chr15:75,490,285 INFO 2026-06-03 20:36:10 SinglePassSamProgram Processed 424,000,000 records. Elapsed time: 00:05:26s. Time for last 1,000,000: 0s. Last read position: chr15:78,990,258 INFO 2026-06-03 20:36:11 SinglePassSamProgram Processed 425,000,000 records. Elapsed time: 00:05:27s. Time for last 1,000,000: 0s. Last read position: chr15:85,543,777 INFO 2026-06-03 20:36:11 SinglePassSamProgram Processed 426,000,000 records. Elapsed time: 00:05:27s. Time for last 1,000,000: 0s. Last read position: chr15:88,907,222 INFO 2026-06-03 20:36:12 SinglePassSamProgram Processed 427,000,000 records. Elapsed time: 00:05:28s. Time for last 1,000,000: 0s. Last read position: chr15:90,227,960 INFO 2026-06-03 20:36:13 SinglePassSamProgram Processed 428,000,000 records. Elapsed time: 00:05:29s. Time for last 1,000,000: 0s. Last read position: chr15:98,913,072 INFO 2026-06-03 20:36:14 SinglePassSamProgram Processed 429,000,000 records. Elapsed time: 00:05:30s. Time for last 1,000,000: 0s. Last read position: chr16:293,656 INFO 2026-06-03 20:36:15 SinglePassSamProgram Processed 430,000,000 records. Elapsed time: 00:05:30s. Time for last 1,000,000: 0s. Last read position: chr16:717,112 INFO 2026-06-03 20:36:15 SinglePassSamProgram Processed 431,000,000 records. Elapsed time: 00:05:31s. Time for last 1,000,000: 0s. Last read position: chr16:1,743,338 INFO 2026-06-03 20:36:16 SinglePassSamProgram Processed 432,000,000 records. Elapsed time: 00:05:32s. Time for last 1,000,000: 0s. Last read position: chr16:2,108,566 INFO 2026-06-03 20:36:17 SinglePassSamProgram Processed 433,000,000 records. Elapsed time: 00:05:33s. Time for last 1,000,000: 0s. Last read position: chr16:2,762,182 INFO 2026-06-03 20:36:18 SinglePassSamProgram Processed 434,000,000 records. Elapsed time: 00:05:34s. Time for last 1,000,000: 0s. Last read position: chr16:3,026,873 INFO 2026-06-03 20:36:18 SinglePassSamProgram Processed 435,000,000 records. Elapsed time: 00:05:34s. Time for last 1,000,000: 0s. Last read position: chr16:4,381,640 INFO 2026-06-03 20:36:19 SinglePassSamProgram Processed 436,000,000 records. Elapsed time: 00:05:35s. Time for last 1,000,000: 0s. Last read position: chr16:10,907,539 INFO 2026-06-03 20:36:20 SinglePassSamProgram Processed 437,000,000 records. Elapsed time: 00:05:36s. Time for last 1,000,000: 0s. Last read position: chr16:14,920,813 INFO 2026-06-03 20:36:21 SinglePassSamProgram Processed 438,000,000 records. Elapsed time: 00:05:37s. Time for last 1,000,000: 0s. Last read position: chr16:15,720,882 INFO 2026-06-03 20:36:21 SinglePassSamProgram Processed 439,000,000 records. Elapsed time: 00:05:37s. Time for last 1,000,000: 0s. Last read position: chr16:16,287,789 INFO 2026-06-03 20:36:22 SinglePassSamProgram Processed 440,000,000 records. Elapsed time: 00:05:38s. Time for last 1,000,000: 0s. Last read position: chr16:18,348,588 INFO 2026-06-03 20:36:23 SinglePassSamProgram Processed 441,000,000 records. Elapsed time: 00:05:39s. Time for last 1,000,000: 0s. Last read position: chr16:18,892,241 INFO 2026-06-03 20:36:24 SinglePassSamProgram Processed 442,000,000 records. Elapsed time: 00:05:40s. Time for last 1,000,000: 0s. Last read position: chr16:21,834,946 INFO 2026-06-03 20:36:24 SinglePassSamProgram Processed 443,000,000 records. Elapsed time: 00:05:40s. Time for last 1,000,000: 0s. Last read position: chr16:22,533,986 INFO 2026-06-03 20:36:25 SinglePassSamProgram Processed 444,000,000 records. Elapsed time: 00:05:41s. Time for last 1,000,000: 0s. Last read position: chr16:27,573,900 INFO 2026-06-03 20:36:26 SinglePassSamProgram Processed 445,000,000 records. Elapsed time: 00:05:42s. Time for last 1,000,000: 0s. Last read position: chr16:28,835,349 INFO 2026-06-03 20:36:27 SinglePassSamProgram Processed 446,000,000 records. Elapsed time: 00:05:43s. Time for last 1,000,000: 0s. Last read position: chr16:29,485,599 INFO 2026-06-03 20:36:27 SinglePassSamProgram Processed 447,000,000 records. Elapsed time: 00:05:43s. Time for last 1,000,000: 0s. Last read position: chr16:29,985,711 INFO 2026-06-03 20:36:28 SinglePassSamProgram Processed 448,000,000 records. Elapsed time: 00:05:44s. Time for last 1,000,000: 0s. Last read position: chr16:30,245,457 INFO 2026-06-03 20:36:29 SinglePassSamProgram Processed 449,000,000 records. Elapsed time: 00:05:45s. Time for last 1,000,000: 0s. Last read position: chr16:30,739,492 INFO 2026-06-03 20:36:30 SinglePassSamProgram Processed 450,000,000 records. Elapsed time: 00:05:46s. Time for last 1,000,000: 0s. Last read position: chr16:31,190,301 INFO 2026-06-03 20:36:30 SinglePassSamProgram Processed 451,000,000 records. Elapsed time: 00:05:46s. Time for last 1,000,000: 0s. Last read position: chr16:50,368,171 INFO 2026-06-03 20:36:31 SinglePassSamProgram Processed 452,000,000 records. Elapsed time: 00:05:47s. Time for last 1,000,000: 0s. Last read position: chr16:56,626,909 INFO 2026-06-03 20:36:32 SinglePassSamProgram Processed 453,000,000 records. Elapsed time: 00:05:48s. Time for last 1,000,000: 0s. Last read position: chr16:58,530,321 INFO 2026-06-03 20:36:33 SinglePassSamProgram Processed 454,000,000 records. Elapsed time: 00:05:49s. Time for last 1,000,000: 0s. Last read position: chr16:67,194,953 INFO 2026-06-03 20:36:33 SinglePassSamProgram Processed 455,000,000 records. Elapsed time: 00:05:49s. Time for last 1,000,000: 0s. Last read position: chr16:68,235,634 INFO 2026-06-03 20:36:34 SinglePassSamProgram Processed 456,000,000 records. Elapsed time: 00:05:50s. Time for last 1,000,000: 0s. Last read position: chr16:70,120,498 INFO 2026-06-03 20:36:35 SinglePassSamProgram Processed 457,000,000 records. Elapsed time: 00:05:51s. Time for last 1,000,000: 0s. Last read position: chr16:72,796,067 INFO 2026-06-03 20:36:36 SinglePassSamProgram Processed 458,000,000 records. Elapsed time: 00:05:52s. Time for last 1,000,000: 0s. Last read position: chr16:80,684,607 INFO 2026-06-03 20:36:37 SinglePassSamProgram Processed 459,000,000 records. Elapsed time: 00:05:53s. Time for last 1,000,000: 0s. Last read position: chr16:85,805,733 INFO 2026-06-03 20:36:37 SinglePassSamProgram Processed 460,000,000 records. Elapsed time: 00:05:53s. Time for last 1,000,000: 0s. Last read position: chr16:88,646,115 INFO 2026-06-03 20:36:38 SinglePassSamProgram Processed 461,000,000 records. Elapsed time: 00:05:54s. Time for last 1,000,000: 0s. Last read position: chr16:89,305,216 INFO 2026-06-03 20:36:39 SinglePassSamProgram Processed 462,000,000 records. Elapsed time: 00:05:55s. Time for last 1,000,000: 0s. Last read position: chr17:560,444 INFO 2026-06-03 20:36:40 SinglePassSamProgram Processed 463,000,000 records. Elapsed time: 00:05:56s. Time for last 1,000,000: 0s. Last read position: chr17:1,725,214 INFO 2026-06-03 20:36:40 SinglePassSamProgram Processed 464,000,000 records. Elapsed time: 00:05:56s. Time for last 1,000,000: 0s. Last read position: chr17:4,173,914 INFO 2026-06-03 20:36:41 SinglePassSamProgram Processed 465,000,000 records. Elapsed time: 00:05:57s. Time for last 1,000,000: 0s. Last read position: chr17:5,422,766 INFO 2026-06-03 20:36:42 SinglePassSamProgram Processed 466,000,000 records. Elapsed time: 00:05:58s. Time for last 1,000,000: 0s. Last read position: chr17:7,417,299 INFO 2026-06-03 20:36:43 SinglePassSamProgram Processed 467,000,000 records. Elapsed time: 00:05:59s. Time for last 1,000,000: 0s. Last read position: chr17:7,884,888 INFO 2026-06-03 20:36:44 SinglePassSamProgram Processed 468,000,000 records. Elapsed time: 00:05:59s. Time for last 1,000,000: 0s. Last read position: chr17:15,239,513 INFO 2026-06-03 20:36:44 SinglePassSamProgram Processed 469,000,000 records. Elapsed time: 00:06:00s. Time for last 1,000,000: 0s. Last read position: chr17:17,813,573 INFO 2026-06-03 20:36:45 SinglePassSamProgram Processed 470,000,000 records. Elapsed time: 00:06:01s. Time for last 1,000,000: 0s. Last read position: chr17:21,284,950 INFO 2026-06-03 20:36:46 SinglePassSamProgram Processed 471,000,000 records. Elapsed time: 00:06:02s. Time for last 1,000,000: 0s. Last read position: chr17:28,637,115 INFO 2026-06-03 20:36:47 SinglePassSamProgram Processed 472,000,000 records. Elapsed time: 00:06:03s. Time for last 1,000,000: 0s. Last read position: chr17:29,566,883 INFO 2026-06-03 20:36:47 SinglePassSamProgram Processed 473,000,000 records. Elapsed time: 00:06:03s. Time for last 1,000,000: 0s. Last read position: chr17:32,360,690 INFO 2026-06-03 20:36:48 SinglePassSamProgram Processed 474,000,000 records. Elapsed time: 00:06:04s. Time for last 1,000,000: 0s. Last read position: chr17:35,844,536 INFO 2026-06-03 20:36:49 SinglePassSamProgram Processed 475,000,000 records. Elapsed time: 00:06:05s. Time for last 1,000,000: 0s. Last read position: chr17:38,008,242 INFO 2026-06-03 20:36:50 SinglePassSamProgram Processed 476,000,000 records. Elapsed time: 00:06:06s. Time for last 1,000,000: 0s. Last read position: chr17:38,914,369 INFO 2026-06-03 20:36:50 SinglePassSamProgram Processed 477,000,000 records. Elapsed time: 00:06:06s. Time for last 1,000,000: 0s. Last read position: chr17:39,715,316 INFO 2026-06-03 20:36:51 SinglePassSamProgram Processed 478,000,000 records. Elapsed time: 00:06:07s. Time for last 1,000,000: 0s. Last read position: chr17:40,123,096 INFO 2026-06-03 20:36:52 SinglePassSamProgram Processed 479,000,000 records. Elapsed time: 00:06:08s. Time for last 1,000,000: 0s. Last read position: chr17:40,885,084 INFO 2026-06-03 20:36:53 SinglePassSamProgram Processed 480,000,000 records. Elapsed time: 00:06:09s. Time for last 1,000,000: 0s. Last read position: chr17:41,819,260 INFO 2026-06-03 20:36:53 SinglePassSamProgram Processed 481,000,000 records. Elapsed time: 00:06:09s. Time for last 1,000,000: 0s. Last read position: chr17:42,388,329 INFO 2026-06-03 20:36:54 SinglePassSamProgram Processed 482,000,000 records. Elapsed time: 00:06:10s. Time for last 1,000,000: 0s. Last read position: chr17:43,016,379 INFO 2026-06-03 20:36:55 SinglePassSamProgram Processed 483,000,000 records. Elapsed time: 00:06:11s. Time for last 1,000,000: 0s. Last read position: chr17:44,349,157 INFO 2026-06-03 20:36:56 SinglePassSamProgram Processed 484,000,000 records. Elapsed time: 00:06:12s. Time for last 1,000,000: 0s. Last read position: chr17:45,405,994 INFO 2026-06-03 20:36:57 SinglePassSamProgram Processed 485,000,000 records. Elapsed time: 00:06:12s. Time for last 1,000,000: 0s. Last read position: chr17:47,619,759 INFO 2026-06-03 20:36:57 SinglePassSamProgram Processed 486,000,000 records. Elapsed time: 00:06:13s. Time for last 1,000,000: 0s. Last read position: chr17:48,862,917 INFO 2026-06-03 20:36:58 SinglePassSamProgram Processed 487,000,000 records. Elapsed time: 00:06:14s. Time for last 1,000,000: 0s. Last read position: chr17:50,185,628 INFO 2026-06-03 20:36:59 SinglePassSamProgram Processed 488,000,000 records. Elapsed time: 00:06:15s. Time for last 1,000,000: 0s. Last read position: chr17:50,186,907 INFO 2026-06-03 20:37:00 SinglePassSamProgram Processed 489,000,000 records. Elapsed time: 00:06:16s. Time for last 1,000,000: 0s. Last read position: chr17:50,187,894 INFO 2026-06-03 20:37:00 SinglePassSamProgram Processed 490,000,000 records. Elapsed time: 00:06:16s. Time for last 1,000,000: 0s. Last read position: chr17:50,188,578 INFO 2026-06-03 20:37:01 SinglePassSamProgram Processed 491,000,000 records. Elapsed time: 00:06:17s. Time for last 1,000,000: 0s. Last read position: chr17:50,189,239 INFO 2026-06-03 20:37:02 SinglePassSamProgram Processed 492,000,000 records. Elapsed time: 00:06:18s. Time for last 1,000,000: 0s. Last read position: chr17:50,189,862 INFO 2026-06-03 20:37:03 SinglePassSamProgram Processed 493,000,000 records. Elapsed time: 00:06:19s. Time for last 1,000,000: 0s. Last read position: chr17:50,190,373 INFO 2026-06-03 20:37:04 SinglePassSamProgram Processed 494,000,000 records. Elapsed time: 00:06:20s. Time for last 1,000,000: 0s. Last read position: chr17:50,191,477 INFO 2026-06-03 20:37:04 SinglePassSamProgram Processed 495,000,000 records. Elapsed time: 00:06:20s. Time for last 1,000,000: 0s. Last read position: chr17:50,192,651 INFO 2026-06-03 20:37:05 SinglePassSamProgram Processed 496,000,000 records. Elapsed time: 00:06:21s. Time for last 1,000,000: 0s. Last read position: chr17:50,193,959 INFO 2026-06-03 20:37:06 SinglePassSamProgram Processed 497,000,000 records. Elapsed time: 00:06:22s. Time for last 1,000,000: 0s. Last read position: chr17:50,194,383 INFO 2026-06-03 20:37:07 SinglePassSamProgram Processed 498,000,000 records. Elapsed time: 00:06:23s. Time for last 1,000,000: 0s. Last read position: chr17:50,194,811 INFO 2026-06-03 20:37:08 SinglePassSamProgram Processed 499,000,000 records. Elapsed time: 00:06:24s. Time for last 1,000,000: 0s. Last read position: chr17:50,195,573 INFO 2026-06-03 20:37:09 SinglePassSamProgram Processed 500,000,000 records. Elapsed time: 00:06:24s. Time for last 1,000,000: 0s. Last read position: chr17:50,196,181 INFO 2026-06-03 20:37:09 SinglePassSamProgram Processed 501,000,000 records. Elapsed time: 00:06:25s. Time for last 1,000,000: 0s. Last read position: chr17:50,196,660 INFO 2026-06-03 20:37:10 SinglePassSamProgram Processed 502,000,000 records. Elapsed time: 00:06:26s. Time for last 1,000,000: 0s. Last read position: chr17:50,197,963 INFO 2026-06-03 20:37:11 SinglePassSamProgram Processed 503,000,000 records. Elapsed time: 00:06:27s. Time for last 1,000,000: 0s. Last read position: chr17:50,199,290 INFO 2026-06-03 20:37:12 SinglePassSamProgram Processed 504,000,000 records. Elapsed time: 00:06:28s. Time for last 1,000,000: 0s. Last read position: chr17:50,353,901 INFO 2026-06-03 20:37:13 SinglePassSamProgram Processed 505,000,000 records. Elapsed time: 00:06:28s. Time for last 1,000,000: 0s. Last read position: chr17:51,260,603 INFO 2026-06-03 20:37:13 SinglePassSamProgram Processed 506,000,000 records. Elapsed time: 00:06:29s. Time for last 1,000,000: 0s. Last read position: chr17:58,504,336 INFO 2026-06-03 20:37:14 SinglePassSamProgram Processed 507,000,000 records. Elapsed time: 00:06:30s. Time for last 1,000,000: 0s. Last read position: chr17:59,683,202 INFO 2026-06-03 20:37:15 SinglePassSamProgram Processed 508,000,000 records. Elapsed time: 00:06:31s. Time for last 1,000,000: 0s. Last read position: chr17:63,433,384 INFO 2026-06-03 20:37:16 SinglePassSamProgram Processed 509,000,000 records. Elapsed time: 00:06:32s. Time for last 1,000,000: 0s. Last read position: chr17:64,506,078 INFO 2026-06-03 20:37:16 SinglePassSamProgram Processed 510,000,000 records. Elapsed time: 00:06:32s. Time for last 1,000,000: 0s. Last read position: chr17:68,428,725 INFO 2026-06-03 20:37:17 SinglePassSamProgram Processed 511,000,000 records. Elapsed time: 00:06:33s. Time for last 1,000,000: 0s. Last read position: chr17:74,748,937 INFO 2026-06-03 20:37:18 SinglePassSamProgram Processed 512,000,000 records. Elapsed time: 00:06:34s. Time for last 1,000,000: 0s. Last read position: chr17:75,522,196 INFO 2026-06-03 20:37:19 SinglePassSamProgram Processed 513,000,000 records. Elapsed time: 00:06:35s. Time for last 1,000,000: 0s. Last read position: chr17:75,754,619 INFO 2026-06-03 20:37:19 SinglePassSamProgram Processed 514,000,000 records. Elapsed time: 00:06:35s. Time for last 1,000,000: 0s. Last read position: chr17:76,081,671 INFO 2026-06-03 20:37:20 SinglePassSamProgram Processed 515,000,000 records. Elapsed time: 00:06:36s. Time for last 1,000,000: 0s. Last read position: chr17:77,490,785 INFO 2026-06-03 20:37:21 SinglePassSamProgram Processed 516,000,000 records. Elapsed time: 00:06:37s. Time for last 1,000,000: 0s. Last read position: chr17:78,972,379 INFO 2026-06-03 20:37:22 SinglePassSamProgram Processed 517,000,000 records. Elapsed time: 00:06:38s. Time for last 1,000,000: 0s. Last read position: chr17:80,319,270 INFO 2026-06-03 20:37:22 SinglePassSamProgram Processed 518,000,000 records. Elapsed time: 00:06:38s. Time for last 1,000,000: 0s. Last read position: chr17:81,106,876 INFO 2026-06-03 20:37:23 SinglePassSamProgram Processed 519,000,000 records. Elapsed time: 00:06:39s. Time for last 1,000,000: 0s. Last read position: chr17:81,696,666 INFO 2026-06-03 20:37:24 SinglePassSamProgram Processed 520,000,000 records. Elapsed time: 00:06:40s. Time for last 1,000,000: 0s. Last read position: chr17:81,983,550 INFO 2026-06-03 20:37:25 SinglePassSamProgram Processed 521,000,000 records. Elapsed time: 00:06:41s. Time for last 1,000,000: 0s. Last read position: chr17:82,088,214 INFO 2026-06-03 20:37:26 SinglePassSamProgram Processed 522,000,000 records. Elapsed time: 00:06:41s. Time for last 1,000,000: 0s. Last read position: chr17:82,900,692 INFO 2026-06-03 20:37:26 SinglePassSamProgram Processed 523,000,000 records. Elapsed time: 00:06:42s. Time for last 1,000,000: 0s. Last read position: chr18:9,396,294 INFO 2026-06-03 20:37:27 SinglePassSamProgram Processed 524,000,000 records. Elapsed time: 00:06:43s. Time for last 1,000,000: 0s. Last read position: chr18:23,894,313 INFO 2026-06-03 20:37:28 SinglePassSamProgram Processed 525,000,000 records. Elapsed time: 00:06:44s. Time for last 1,000,000: 0s. Last read position: chr18:42,013,511 INFO 2026-06-03 20:37:29 SinglePassSamProgram Processed 526,000,000 records. Elapsed time: 00:06:45s. Time for last 1,000,000: 0s. Last read position: chr18:54,224,389 INFO 2026-06-03 20:37:29 SinglePassSamProgram Processed 527,000,000 records. Elapsed time: 00:06:45s. Time for last 1,000,000: 0s. Last read position: chr18:63,318,429 INFO 2026-06-03 20:37:30 SinglePassSamProgram Processed 528,000,000 records. Elapsed time: 00:06:46s. Time for last 1,000,000: 0s. Last read position: chr19:572,664 INFO 2026-06-03 20:37:31 SinglePassSamProgram Processed 529,000,000 records. Elapsed time: 00:06:47s. Time for last 1,000,000: 0s. Last read position: chr19:984,404 INFO 2026-06-03 20:37:32 SinglePassSamProgram Processed 530,000,000 records. Elapsed time: 00:06:48s. Time for last 1,000,000: 0s. Last read position: chr19:1,257,018 INFO 2026-06-03 20:37:32 SinglePassSamProgram Processed 531,000,000 records. Elapsed time: 00:06:48s. Time for last 1,000,000: 0s. Last read position: chr19:1,827,635 INFO 2026-06-03 20:37:33 SinglePassSamProgram Processed 532,000,000 records. Elapsed time: 00:06:49s. Time for last 1,000,000: 0s. Last read position: chr19:2,343,103 INFO 2026-06-03 20:37:34 SinglePassSamProgram Processed 533,000,000 records. Elapsed time: 00:06:50s. Time for last 1,000,000: 0s. Last read position: chr19:3,638,893 INFO 2026-06-03 20:37:35 SinglePassSamProgram Processed 534,000,000 records. Elapsed time: 00:06:51s. Time for last 1,000,000: 0s. Last read position: chr19:4,682,702 INFO 2026-06-03 20:37:36 SinglePassSamProgram Processed 535,000,000 records. Elapsed time: 00:06:52s. Time for last 1,000,000: 0s. Last read position: chr19:5,843,873 INFO 2026-06-03 20:37:36 SinglePassSamProgram Processed 536,000,000 records. Elapsed time: 00:06:52s. Time for last 1,000,000: 0s. Last read position: chr19:6,714,054 INFO 2026-06-03 20:37:37 SinglePassSamProgram Processed 537,000,000 records. Elapsed time: 00:06:53s. Time for last 1,000,000: 0s. Last read position: chr19:7,909,755 INFO 2026-06-03 20:37:38 SinglePassSamProgram Processed 538,000,000 records. Elapsed time: 00:06:54s. Time for last 1,000,000: 0s. Last read position: chr19:9,986,554 INFO 2026-06-03 20:37:39 SinglePassSamProgram Processed 539,000,000 records. Elapsed time: 00:06:55s. Time for last 1,000,000: 0s. Last read position: chr19:10,627,762 INFO 2026-06-03 20:37:39 SinglePassSamProgram Processed 540,000,000 records. Elapsed time: 00:06:55s. Time for last 1,000,000: 0s. Last read position: chr19:11,176,590 INFO 2026-06-03 20:37:40 SinglePassSamProgram Processed 541,000,000 records. Elapsed time: 00:06:56s. Time for last 1,000,000: 0s. Last read position: chr19:12,670,001 INFO 2026-06-03 20:37:41 SinglePassSamProgram Processed 542,000,000 records. Elapsed time: 00:06:57s. Time for last 1,000,000: 0s. Last read position: chr19:13,090,295 INFO 2026-06-03 20:37:42 SinglePassSamProgram Processed 543,000,000 records. Elapsed time: 00:06:58s. Time for last 1,000,000: 0s. Last read position: chr19:14,404,494 INFO 2026-06-03 20:37:43 SinglePassSamProgram Processed 544,000,000 records. Elapsed time: 00:06:58s. Time for last 1,000,000: 0s. Last read position: chr19:15,181,584 INFO 2026-06-03 20:37:43 SinglePassSamProgram Processed 545,000,000 records. Elapsed time: 00:06:59s. Time for last 1,000,000: 0s. Last read position: chr19:15,431,102 INFO 2026-06-03 20:37:44 SinglePassSamProgram Processed 546,000,000 records. Elapsed time: 00:07:00s. Time for last 1,000,000: 0s. Last read position: chr19:17,211,749 INFO 2026-06-03 20:37:45 SinglePassSamProgram Processed 547,000,000 records. Elapsed time: 00:07:01s. Time for last 1,000,000: 0s. Last read position: chr19:18,144,999 INFO 2026-06-03 20:37:46 SinglePassSamProgram Processed 548,000,000 records. Elapsed time: 00:07:02s. Time for last 1,000,000: 0s. Last read position: chr19:18,787,545 INFO 2026-06-03 20:37:46 SinglePassSamProgram Processed 549,000,000 records. Elapsed time: 00:07:02s. Time for last 1,000,000: 0s. Last read position: chr19:23,361,511 INFO 2026-06-03 20:37:47 SinglePassSamProgram Processed 550,000,000 records. Elapsed time: 00:07:03s. Time for last 1,000,000: 0s. Last read position: chr19:35,019,431 INFO 2026-06-03 20:37:48 SinglePassSamProgram Processed 551,000,000 records. Elapsed time: 00:07:04s. Time for last 1,000,000: 0s. Last read position: chr19:35,787,421 INFO 2026-06-03 20:37:49 SinglePassSamProgram Processed 552,000,000 records. Elapsed time: 00:07:05s. Time for last 1,000,000: 0s. Last read position: chr19:38,647,839 INFO 2026-06-03 20:37:49 SinglePassSamProgram Processed 553,000,000 records. Elapsed time: 00:07:05s. Time for last 1,000,000: 0s. Last read position: chr19:38,921,579 INFO 2026-06-03 20:37:50 SinglePassSamProgram Processed 554,000,000 records. Elapsed time: 00:07:06s. Time for last 1,000,000: 0s. Last read position: chr19:39,485,693 INFO 2026-06-03 20:37:51 SinglePassSamProgram Processed 555,000,000 records. Elapsed time: 00:07:07s. Time for last 1,000,000: 0s. Last read position: chr19:40,374,605 INFO 2026-06-03 20:37:52 SinglePassSamProgram Processed 556,000,000 records. Elapsed time: 00:07:08s. Time for last 1,000,000: 0s. Last read position: chr19:41,330,939 INFO 2026-06-03 20:37:53 SinglePassSamProgram Processed 557,000,000 records. Elapsed time: 00:07:08s. Time for last 1,000,000: 0s. Last read position: chr19:41,861,077 INFO 2026-06-03 20:37:53 SinglePassSamProgram Processed 558,000,000 records. Elapsed time: 00:07:09s. Time for last 1,000,000: 0s. Last read position: chr19:42,289,228 INFO 2026-06-03 20:37:54 SinglePassSamProgram Processed 559,000,000 records. Elapsed time: 00:07:10s. Time for last 1,000,000: 0s. Last read position: chr19:44,644,047 INFO 2026-06-03 20:37:55 SinglePassSamProgram Processed 560,000,000 records. Elapsed time: 00:07:11s. Time for last 1,000,000: 0s. Last read position: chr19:45,468,605 INFO 2026-06-03 20:37:56 SinglePassSamProgram Processed 561,000,000 records. Elapsed time: 00:07:12s. Time for last 1,000,000: 0s. Last read position: chr19:46,470,632 INFO 2026-06-03 20:37:56 SinglePassSamProgram Processed 562,000,000 records. Elapsed time: 00:07:12s. Time for last 1,000,000: 0s. Last read position: chr19:47,726,021 INFO 2026-06-03 20:37:57 SinglePassSamProgram Processed 563,000,000 records. Elapsed time: 00:07:13s. Time for last 1,000,000: 0s. Last read position: chr19:48,865,548 INFO 2026-06-03 20:37:58 SinglePassSamProgram Processed 564,000,000 records. Elapsed time: 00:07:14s. Time for last 1,000,000: 0s. Last read position: chr19:49,470,363 INFO 2026-06-03 20:37:59 SinglePassSamProgram Processed 565,000,000 records. Elapsed time: 00:07:15s. Time for last 1,000,000: 0s. Last read position: chr19:49,664,742 INFO 2026-06-03 20:37:59 SinglePassSamProgram Processed 566,000,000 records. Elapsed time: 00:07:15s. Time for last 1,000,000: 0s. Last read position: chr19:50,259,245 INFO 2026-06-03 20:38:00 SinglePassSamProgram Processed 567,000,000 records. Elapsed time: 00:07:16s. Time for last 1,000,000: 0s. Last read position: chr19:52,155,106 INFO 2026-06-03 20:38:01 SinglePassSamProgram Processed 568,000,000 records. Elapsed time: 00:07:17s. Time for last 1,000,000: 0s. Last read position: chr19:54,221,228 INFO 2026-06-03 20:38:02 SinglePassSamProgram Processed 569,000,000 records. Elapsed time: 00:07:18s. Time for last 1,000,000: 0s. Last read position: chr19:55,321,002 INFO 2026-06-03 20:38:03 SinglePassSamProgram Processed 570,000,000 records. Elapsed time: 00:07:18s. Time for last 1,000,000: 0s. Last read position: chr19:57,280,114 INFO 2026-06-03 20:38:03 SinglePassSamProgram Processed 571,000,000 records. Elapsed time: 00:07:19s. Time for last 1,000,000: 0s. Last read position: chr19:58,571,097 INFO 2026-06-03 20:38:04 SinglePassSamProgram Processed 572,000,000 records. Elapsed time: 00:07:20s. Time for last 1,000,000: 0s. Last read position: chr20:3,738,680 INFO 2026-06-03 20:38:05 SinglePassSamProgram Processed 573,000,000 records. Elapsed time: 00:07:21s. Time for last 1,000,000: 0s. Last read position: chr20:17,659,119 INFO 2026-06-03 20:38:06 SinglePassSamProgram Processed 574,000,000 records. Elapsed time: 00:07:22s. Time for last 1,000,000: 0s. Last read position: chr20:25,225,185 INFO 2026-06-03 20:38:06 SinglePassSamProgram Processed 575,000,000 records. Elapsed time: 00:07:22s. Time for last 1,000,000: 0s. Last read position: chr20:31,801,359 INFO 2026-06-03 20:38:07 SinglePassSamProgram Processed 576,000,000 records. Elapsed time: 00:07:23s. Time for last 1,000,000: 0s. Last read position: chr20:34,413,808 INFO 2026-06-03 20:38:08 SinglePassSamProgram Processed 577,000,000 records. Elapsed time: 00:07:24s. Time for last 1,000,000: 0s. Last read position: chr20:35,617,767 INFO 2026-06-03 20:38:09 SinglePassSamProgram Processed 578,000,000 records. Elapsed time: 00:07:25s. Time for last 1,000,000: 0s. Last read position: chr20:36,892,940 INFO 2026-06-03 20:38:09 SinglePassSamProgram Processed 579,000,000 records. Elapsed time: 00:07:25s. Time for last 1,000,000: 0s. Last read position: chr20:41,166,832 INFO 2026-06-03 20:38:10 SinglePassSamProgram Processed 580,000,000 records. Elapsed time: 00:07:26s. Time for last 1,000,000: 0s. Last read position: chr20:44,987,285 INFO 2026-06-03 20:38:11 SinglePassSamProgram Processed 581,000,000 records. Elapsed time: 00:07:27s. Time for last 1,000,000: 0s. Last read position: chr20:46,063,373 INFO 2026-06-03 20:38:12 SinglePassSamProgram Processed 582,000,000 records. Elapsed time: 00:07:28s. Time for last 1,000,000: 0s. Last read position: chr20:49,253,714 INFO 2026-06-03 20:38:13 SinglePassSamProgram Processed 583,000,000 records. Elapsed time: 00:07:28s. Time for last 1,000,000: 0s. Last read position: chr20:53,256,006 INFO 2026-06-03 20:38:13 SinglePassSamProgram Processed 584,000,000 records. Elapsed time: 00:07:29s. Time for last 1,000,000: 0s. Last read position: chr20:58,903,530 INFO 2026-06-03 20:38:14 SinglePassSamProgram Processed 585,000,000 records. Elapsed time: 00:07:30s. Time for last 1,000,000: 0s. Last read position: chr20:62,314,405 INFO 2026-06-03 20:38:15 SinglePassSamProgram Processed 586,000,000 records. Elapsed time: 00:07:31s. Time for last 1,000,000: 0s. Last read position: chr20:62,911,322 INFO 2026-06-03 20:38:16 SinglePassSamProgram Processed 587,000,000 records. Elapsed time: 00:07:32s. Time for last 1,000,000: 0s. Last read position: chr20:63,694,382 INFO 2026-06-03 20:38:16 SinglePassSamProgram Processed 588,000,000 records. Elapsed time: 00:07:32s. Time for last 1,000,000: 0s. Last read position: chr21:6,116,995 INFO 2026-06-03 20:38:17 SinglePassSamProgram Processed 589,000,000 records. Elapsed time: 00:07:33s. Time for last 1,000,000: 0s. Last read position: chr21:8,258,962 INFO 2026-06-03 20:38:18 SinglePassSamProgram Processed 590,000,000 records. Elapsed time: 00:07:34s. Time for last 1,000,000: 0s. Last read position: chr21:8,443,298 INFO 2026-06-03 20:38:19 SinglePassSamProgram Processed 591,000,000 records. Elapsed time: 00:07:34s. Time for last 1,000,000: 0s. Last read position: chr21:26,844,413 INFO 2026-06-03 20:38:19 SinglePassSamProgram Processed 592,000,000 records. Elapsed time: 00:07:35s. Time for last 1,000,000: 0s. Last read position: chr21:33,613,583 INFO 2026-06-03 20:38:20 SinglePassSamProgram Processed 593,000,000 records. Elapsed time: 00:07:36s. Time for last 1,000,000: 0s. Last read position: chr21:38,821,633 INFO 2026-06-03 20:38:21 SinglePassSamProgram Processed 594,000,000 records. Elapsed time: 00:07:37s. Time for last 1,000,000: 0s. Last read position: chr21:42,853,647 INFO 2026-06-03 20:38:22 SinglePassSamProgram Processed 595,000,000 records. Elapsed time: 00:07:38s. Time for last 1,000,000: 0s. Last read position: chr21:44,567,824 INFO 2026-06-03 20:38:22 SinglePassSamProgram Processed 596,000,000 records. Elapsed time: 00:07:38s. Time for last 1,000,000: 0s. Last read position: chr21:45,510,096 INFO 2026-06-03 20:38:23 SinglePassSamProgram Processed 597,000,000 records. Elapsed time: 00:07:39s. Time for last 1,000,000: 0s. Last read position: chr21:46,112,263 INFO 2026-06-03 20:38:24 SinglePassSamProgram Processed 598,000,000 records. Elapsed time: 00:07:40s. Time for last 1,000,000: 0s. Last read position: chr21:46,346,740 INFO 2026-06-03 20:38:25 SinglePassSamProgram Processed 599,000,000 records. Elapsed time: 00:07:41s. Time for last 1,000,000: 0s. Last read position: chr22:19,851,552 INFO 2026-06-03 20:38:26 SinglePassSamProgram Processed 600,000,000 records. Elapsed time: 00:07:41s. Time for last 1,000,000: 0s. Last read position: chr22:21,686,527 INFO 2026-06-03 20:38:26 SinglePassSamProgram Processed 601,000,000 records. Elapsed time: 00:07:42s. Time for last 1,000,000: 0s. Last read position: chr22:23,781,245 INFO 2026-06-03 20:38:27 SinglePassSamProgram Processed 602,000,000 records. Elapsed time: 00:07:43s. Time for last 1,000,000: 0s. Last read position: chr22:26,499,214 INFO 2026-06-03 20:38:28 SinglePassSamProgram Processed 603,000,000 records. Elapsed time: 00:07:44s. Time for last 1,000,000: 0s. Last read position: chr22:29,299,664 INFO 2026-06-03 20:38:29 SinglePassSamProgram Processed 604,000,000 records. Elapsed time: 00:07:44s. Time for last 1,000,000: 0s. Last read position: chr22:31,091,204 INFO 2026-06-03 20:38:29 SinglePassSamProgram Processed 605,000,000 records. Elapsed time: 00:07:45s. Time for last 1,000,000: 0s. Last read position: chr22:35,648,589 INFO 2026-06-03 20:38:30 SinglePassSamProgram Processed 606,000,000 records. Elapsed time: 00:07:46s. Time for last 1,000,000: 0s. Last read position: chr22:36,306,427 INFO 2026-06-03 20:38:31 SinglePassSamProgram Processed 607,000,000 records. Elapsed time: 00:07:47s. Time for last 1,000,000: 0s. Last read position: chr22:37,568,639 INFO 2026-06-03 20:38:32 SinglePassSamProgram Processed 608,000,000 records. Elapsed time: 00:07:48s. Time for last 1,000,000: 0s. Last read position: chr22:38,498,533 INFO 2026-06-03 20:38:32 SinglePassSamProgram Processed 609,000,000 records. Elapsed time: 00:07:48s. Time for last 1,000,000: 0s. Last read position: chr22:40,402,198 INFO 2026-06-03 20:38:33 SinglePassSamProgram Processed 610,000,000 records. Elapsed time: 00:07:49s. Time for last 1,000,000: 0s. Last read position: chr22:41,675,068 INFO 2026-06-03 20:38:34 SinglePassSamProgram Processed 611,000,000 records. Elapsed time: 00:07:50s. Time for last 1,000,000: 0s. Last read position: chr22:43,172,458 INFO 2026-06-03 20:38:35 SinglePassSamProgram Processed 612,000,000 records. Elapsed time: 00:07:51s. Time for last 1,000,000: 0s. Last read position: chr22:49,885,850 INFO 2026-06-03 20:38:35 SinglePassSamProgram Processed 613,000,000 records. Elapsed time: 00:07:51s. Time for last 1,000,000: 0s. Last read position: chr22:50,455,358 INFO 2026-06-03 20:38:36 SinglePassSamProgram Processed 614,000,000 records. Elapsed time: 00:07:52s. Time for last 1,000,000: 0s. Last read position: chr22:50,776,684 INFO 2026-06-03 20:38:37 SinglePassSamProgram Processed 615,000,000 records. Elapsed time: 00:07:53s. Time for last 1,000,000: 0s. Last read position: chrX:3,903,452 INFO 2026-06-03 20:38:38 SinglePassSamProgram Processed 616,000,000 records. Elapsed time: 00:07:54s. Time for last 1,000,000: 0s. Last read position: chrX:23,785,686 INFO 2026-06-03 20:38:39 SinglePassSamProgram Processed 617,000,000 records. Elapsed time: 00:07:54s. Time for last 1,000,000: 0s. Last read position: chrX:41,557,032 INFO 2026-06-03 20:38:39 SinglePassSamProgram Processed 618,000,000 records. Elapsed time: 00:07:55s. Time for last 1,000,000: 0s. Last read position: chrX:48,539,902 INFO 2026-06-03 20:38:40 SinglePassSamProgram Processed 619,000,000 records. Elapsed time: 00:07:56s. Time for last 1,000,000: 0s. Last read position: chrX:51,900,182 INFO 2026-06-03 20:38:41 SinglePassSamProgram Processed 620,000,000 records. Elapsed time: 00:07:57s. Time for last 1,000,000: 0s. Last read position: chrX:54,809,860 INFO 2026-06-03 20:38:42 SinglePassSamProgram Processed 621,000,000 records. Elapsed time: 00:07:58s. Time for last 1,000,000: 0s. Last read position: chrX:71,294,299 INFO 2026-06-03 20:38:42 SinglePassSamProgram Processed 622,000,000 records. Elapsed time: 00:07:58s. Time for last 1,000,000: 0s. Last read position: chrX:78,114,102 INFO 2026-06-03 20:38:43 SinglePassSamProgram Processed 623,000,000 records. Elapsed time: 00:07:59s. Time for last 1,000,000: 0s. Last read position: chrX:109,644,030 INFO 2026-06-03 20:38:44 SinglePassSamProgram Processed 624,000,000 records. Elapsed time: 00:08:00s. Time for last 1,000,000: 0s. Last read position: chrX:130,015,454 INFO 2026-06-03 20:38:45 SinglePassSamProgram Processed 625,000,000 records. Elapsed time: 00:08:01s. Time for last 1,000,000: 0s. Last read position: chrX:153,594,562 INFO 2026-06-03 20:38:45 SinglePassSamProgram Processed 626,000,000 records. Elapsed time: 00:08:01s. Time for last 1,000,000: 0s. Last read position: chrX:154,349,361 INFO 2026-06-03 20:38:46 SinglePassSamProgram Processed 627,000,000 records. Elapsed time: 00:08:02s. Time for last 1,000,000: 0s. Last read position: chrX:154,362,092 INFO 2026-06-03 20:38:47 SinglePassSamProgram Processed 628,000,000 records. Elapsed time: 00:08:03s. Time for last 1,000,000: 0s. Last read position: chrX:154,531,820 INFO 2026-06-03 20:38:48 SinglePassSamProgram Processed 629,000,000 records. Elapsed time: 00:08:04s. Time for last 1,000,000: 0s. Last read position: GL000220.1:114,109 INFO 2026-06-03 20:38:48 SinglePassSamProgram Processed 630,000,000 records. Elapsed time: 00:08:04s. Time for last 1,000,000: 0s. Last read position: GL000220.1:159,502 INFO 2026-06-03 20:38:49 SinglePassSamProgram Processed 631,000,000 records. Elapsed time: 00:08:05s. Time for last 1,000,000: 0s. Last read position: KI270733.1:170,616 INFO 2026-06-03 20:38:50 RExecutor Executing R script via command: Rscript /tmp/script7415404340360771022.R /tmp/nxf.XXXXmqWq43/aih-tih-sc-3270ab-R1_A23YTGFLT4_1_collectinsertsize.txt /tmp/nxf.XXXXmqWq43/aih-tih-sc-3270ab-R1_A23YTGFLT4_1_collectinsertsize.pdf aih-tih-sc-3270ab-R1_A23YTGFLT4_1.Aligned.sortedByCoord.out.bam ERROR 2026-06-03 20:38:50 ProcessExecutor /bin/sh: warning: setlocale: LC_ALL: cannot change locale (en_US.UTF-8) ERROR 2026-06-03 20:38:50 ProcessExecutor sh: warning: setlocale: LC_ALL: cannot change locale (en_US.UTF-8) ERROR 2026-06-03 20:38:50 ProcessExecutor sh: warning: setlocale: LC_ALL: cannot change locale (en_US.UTF-8) ERROR 2026-06-03 20:38:50 ProcessExecutor During startup - Warning messages: ERROR 2026-06-03 20:38:50 ProcessExecutor 1: Setting LC_CTYPE failed, using "C" ERROR 2026-06-03 20:38:50 ProcessExecutor 2: Setting LC_COLLATE failed, using "C" ERROR 2026-06-03 20:38:50 ProcessExecutor 3: Setting LC_TIME failed, using "C" ERROR 2026-06-03 20:38:50 ProcessExecutor 4: Setting LC_MESSAGES failed, using "C" ERROR 2026-06-03 20:38:50 ProcessExecutor 5: Setting LC_MONETARY failed, using "C" ERROR 2026-06-03 20:38:50 ProcessExecutor 6: Setting LC_PAPER failed, using "C" ERROR 2026-06-03 20:38:50 ProcessExecutor 7: Setting LC_MEASUREMENT failed, using "C" INFO 2026-06-03 20:38:50 ProcessExecutor null device INFO 2026-06-03 20:38:50 ProcessExecutor 1 ERROR 2026-06-03 20:38:50 ProcessExecutor sh: warning: setlocale: LC_ALL: cannot change locale (en_US.UTF-8) [Wed Jun 03 20:38:50 GMT 2026] picard.analysis.CollectInsertSizeMetrics done. Elapsed time: 8.11 minutes. Runtime.totalMemory()=358612992