Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/rna/GRCh38/starfusion/ctat_genome_lib_build_dir/ref_genome.fa
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/e8/fdae48d224671e805ddc13e1984d42/.command.sh
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/e8/fdae48d224671e805ddc13e1984d42/.command.run
Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/rna/GRCh38/starfusion/ctat_genome_lib_build_dir/ref_genome.fa.fai
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/67/d672a47a266010b96e49181ec6830a/aih-tih-sc-01c779-R1_A23YTGFLT4_1.Aligned.sortedByCoord.out.bam
==> STAGING COMPLETE (5 inputs)
Using GATK jar /usr/local/share/gatk4-4.4.0.0-0/gatk-package-4.4.0.0-local.jar
Running:
java -Dsamjdk.use_async_io_read_samtools=false -Dsamjdk.use_async_io_write_samtools=true -Dsamjdk.use_async_io_write_tribble=false -Dsamjdk.compression_level=2 -Xmx60620M -XX:-UsePerfData -XX:ParallelGCThreads=2 -jar /usr/local/share/gatk4-4.4.0.0-0/gatk-package-4.4.0.0-local.jar MarkDuplicates --INPUT aih-tih-sc-01c779-R1_A23YTGFLT4_1.Aligned.sortedByCoord.out.bam --OUTPUT aih-tih-sc-01c779-R1_A23YTGFLT4_1.md.bam --METRICS_FILE aih-tih-sc-01c779-R1_A23YTGFLT4_1.md.bam.metrics --TMP_DIR . --CREATE_INDEX true --REFERENCE_SEQUENCE ref_genome.fa -REMOVE_DUPLICATES false -VALIDATION_STRINGENCY LENIENT
19:59:53.854 INFO NativeLibraryLoader - Loading libgkl_compression.so from jar:file:/usr/local/share/gatk4-4.4.0.0-0/gatk-package-4.4.0.0-local.jar!/com/intel/gkl/native/libgkl_compression.so
[Wed Jun 03 19:59:53 GMT 2026] MarkDuplicates --INPUT aih-tih-sc-01c779-R1_A23YTGFLT4_1.Aligned.sortedByCoord.out.bam --OUTPUT aih-tih-sc-01c779-R1_A23YTGFLT4_1.md.bam --METRICS_FILE aih-tih-sc-01c779-R1_A23YTGFLT4_1.md.bam.metrics --REMOVE_DUPLICATES false --TMP_DIR . --VALIDATION_STRINGENCY LENIENT --CREATE_INDEX true --REFERENCE_SEQUENCE ref_genome.fa --MAX_SEQUENCES_FOR_DISK_READ_ENDS_MAP 50000 --MAX_FILE_HANDLES_FOR_READ_ENDS_MAP 8000 --SORTING_COLLECTION_SIZE_RATIO 0.25 --TAG_DUPLICATE_SET_MEMBERS false --REMOVE_SEQUENCING_DUPLICATES false --TAGGING_POLICY DontTag --CLEAR_DT true --DUPLEX_UMI false --FLOW_MODE false --FLOW_QUALITY_SUM_STRATEGY false --USE_END_IN_UNPAIRED_READS false --USE_UNPAIRED_CLIPPED_END false --UNPAIRED_END_UNCERTAINTY 0 --FLOW_SKIP_FIRST_N_FLOWS 0 --FLOW_Q_IS_KNOWN_END false --FLOW_EFFECTIVE_QUALITY_THRESHOLD 15 --ADD_PG_TAG_TO_READS true --ASSUME_SORTED false --DUPLICATE_SCORING_STRATEGY SUM_OF_BASE_QUALITIES --PROGRAM_RECORD_ID MarkDuplicates --PROGRAM_GROUP_NAME MarkDuplicates --READ_NAME_REGEX <optimized capture of last three ':' separated fields as numeric values> --OPTICAL_DUPLICATE_PIXEL_DISTANCE 100 --MAX_OPTICAL_DUPLICATE_SET_SIZE 300000 --VERBOSITY INFO --QUIET false --COMPRESSION_LEVEL 2 --MAX_RECORDS_IN_RAM 500000 --CREATE_MD5_FILE false --help false --version false --showHidden false --USE_JDK_DEFLATER false --USE_JDK_INFLATER false
[Wed Jun 03 19:59:53 GMT 2026] Executing as ?@nf-e8fdae48d224671e805ddc13e1984d42-7abfa-sr89p on Linux 6.12.88 amd64; OpenJDK 64-Bit Server VM 17.0.3-internal+0-adhoc..src; Deflater: Intel; Inflater: Intel; Provider GCS is available; Picard version: Version:4.4.0.0
INFO 2026-06-03 19:59:54 MarkDuplicates Start of doWork freeMemory: 105827992; totalMemory: 134217728; maxMemory: 63585648640
INFO 2026-06-03 19:59:54 MarkDuplicates Reading input file and constructing read end information.
INFO 2026-06-03 19:59:54 MarkDuplicates Will retain up to 230382784 data points before spilling to disk.
INFO 2026-06-03 20:00:00 MarkDuplicates Read 1,000,000 records. Elapsed time: 00:00:04s. Time for last 1,000,000: 4s. Last read position: chr1:1,085,957
INFO 2026-06-03 20:00:00 MarkDuplicates Tracking 1583 as yet unmatched pairs. 57 records in RAM.
INFO 2026-06-03 20:00:05 MarkDuplicates Read 2,000,000 records. Elapsed time: 00:00:09s. Time for last 1,000,000: 4s. Last read position: chr1:1,485,821
INFO 2026-06-03 20:00:05 MarkDuplicates Tracking 3878 as yet unmatched pairs. 378 records in RAM.
INFO 2026-06-03 20:00:08 MarkDuplicates Read 3,000,000 records. Elapsed time: 00:00:12s. Time for last 1,000,000: 3s. Last read position: chr1:2,229,228
INFO 2026-06-03 20:00:08 MarkDuplicates Tracking 5098 as yet unmatched pairs. 65 records in RAM.
INFO 2026-06-03 20:00:11 MarkDuplicates Read 4,000,000 records. Elapsed time: 00:00:15s. Time for last 1,000,000: 2s. Last read position: chr1:6,192,975
INFO 2026-06-03 20:00:11 MarkDuplicates Tracking 8245 as yet unmatched pairs. 1500 records in RAM.
INFO 2026-06-03 20:00:15 MarkDuplicates Read 5,000,000 records. Elapsed time: 00:00:19s. Time for last 1,000,000: 3s. Last read position: chr1:8,361,275
INFO 2026-06-03 20:00:15 MarkDuplicates Tracking 8807 as yet unmatched pairs. 379 records in RAM.
INFO 2026-06-03 20:00:19 MarkDuplicates Read 6,000,000 records. Elapsed time: 00:00:23s. Time for last 1,000,000: 3s. Last read position: chr1:10,151,335
INFO 2026-06-03 20:00:19 MarkDuplicates Tracking 10314 as yet unmatched pairs. 283 records in RAM.
INFO 2026-06-03 20:00:23 MarkDuplicates Read 7,000,000 records. Elapsed time: 00:00:27s. Time for last 1,000,000: 4s. Last read position: chr1:11,675,092
INFO 2026-06-03 20:00:23 MarkDuplicates Tracking 11680 as yet unmatched pairs. 132 records in RAM.
INFO 2026-06-03 20:00:27 MarkDuplicates Read 8,000,000 records. Elapsed time: 00:00:31s. Time for last 1,000,000: 4s. Last read position: chr1:12,568,311
INFO 2026-06-03 20:00:27 MarkDuplicates Tracking 13372 as yet unmatched pairs. 277 records in RAM.
INFO 2026-06-03 20:00:32 MarkDuplicates Read 9,000,000 records. Elapsed time: 00:00:36s. Time for last 1,000,000: 4s. Last read position: chr1:16,125,207
INFO 2026-06-03 20:00:32 MarkDuplicates Tracking 14487 as yet unmatched pairs. 53 records in RAM.
INFO 2026-06-03 20:00:35 MarkDuplicates Read 10,000,000 records. Elapsed time: 00:00:38s. Time for last 1,000,000: 2s. Last read position: chr1:19,074,844
INFO 2026-06-03 20:00:35 MarkDuplicates Tracking 16331 as yet unmatched pairs. 339 records in RAM.
INFO 2026-06-03 20:00:39 MarkDuplicates Read 11,000,000 records. Elapsed time: 00:00:43s. Time for last 1,000,000: 4s. Last read position: chr1:19,814,767
INFO 2026-06-03 20:00:39 MarkDuplicates Tracking 17423 as yet unmatched pairs. 36 records in RAM.
INFO 2026-06-03 20:00:43 MarkDuplicates Read 12,000,000 records. Elapsed time: 00:00:47s. Time for last 1,000,000: 3s. Last read position: chr1:21,085,889
INFO 2026-06-03 20:00:43 MarkDuplicates Tracking 18857 as yet unmatched pairs. 114 records in RAM.
INFO 2026-06-03 20:00:47 MarkDuplicates Read 13,000,000 records. Elapsed time: 00:00:51s. Time for last 1,000,000: 4s. Last read position: chr1:21,872,356
INFO 2026-06-03 20:00:47 MarkDuplicates Tracking 20570 as yet unmatched pairs. 190 records in RAM.
INFO 2026-06-03 20:00:52 MarkDuplicates Read 14,000,000 records. Elapsed time: 00:00:55s. Time for last 1,000,000: 4s. Last read position: chr1:23,059,072
INFO 2026-06-03 20:00:52 MarkDuplicates Tracking 22196 as yet unmatched pairs. 247 records in RAM.
INFO 2026-06-03 20:00:56 MarkDuplicates Read 15,000,000 records. Elapsed time: 00:01:00s. Time for last 1,000,000: 4s. Last read position: chr1:24,120,967
INFO 2026-06-03 20:00:56 MarkDuplicates Tracking 23595 as yet unmatched pairs. 227 records in RAM.
INFO 2026-06-03 20:01:00 MarkDuplicates Read 16,000,000 records. Elapsed time: 00:01:04s. Time for last 1,000,000: 4s. Last read position: chr1:26,475,065
INFO 2026-06-03 20:01:00 MarkDuplicates Tracking 25340 as yet unmatched pairs. 599 records in RAM.
INFO 2026-06-03 20:01:05 MarkDuplicates Read 17,000,000 records. Elapsed time: 00:01:09s. Time for last 1,000,000: 4s. Last read position: chr1:27,551,519
INFO 2026-06-03 20:01:05 MarkDuplicates Tracking 26296 as yet unmatched pairs. 72 records in RAM.
INFO 2026-06-03 20:01:08 MarkDuplicates Read 18,000,000 records. Elapsed time: 00:01:12s. Time for last 1,000,000: 3s. Last read position: chr1:31,059,492
INFO 2026-06-03 20:01:08 MarkDuplicates Tracking 27928 as yet unmatched pairs. 233 records in RAM.
INFO 2026-06-03 20:01:12 MarkDuplicates Read 19,000,000 records. Elapsed time: 00:01:16s. Time for last 1,000,000: 3s. Last read position: chr1:32,324,534
INFO 2026-06-03 20:01:12 MarkDuplicates Tracking 29508 as yet unmatched pairs. 342 records in RAM.
INFO 2026-06-03 20:01:16 MarkDuplicates Read 20,000,000 records. Elapsed time: 00:01:20s. Time for last 1,000,000: 4s. Last read position: chr1:34,992,294
INFO 2026-06-03 20:01:16 MarkDuplicates Tracking 30880 as yet unmatched pairs. 131 records in RAM.
INFO 2026-06-03 20:01:20 MarkDuplicates Read 21,000,000 records. Elapsed time: 00:01:24s. Time for last 1,000,000: 3s. Last read position: chr1:37,509,294
INFO 2026-06-03 20:01:20 MarkDuplicates Tracking 32340 as yet unmatched pairs. 144 records in RAM.
INFO 2026-06-03 20:01:23 MarkDuplicates Read 22,000,000 records. Elapsed time: 00:01:27s. Time for last 1,000,000: 2s. Last read position: chr1:39,485,618
INFO 2026-06-03 20:01:23 MarkDuplicates Tracking 33749 as yet unmatched pairs. 250 records in RAM.
INFO 2026-06-03 20:01:26 MarkDuplicates Read 23,000,000 records. Elapsed time: 00:01:30s. Time for last 1,000,000: 3s. Last read position: chr1:42,683,402
INFO 2026-06-03 20:01:26 MarkDuplicates Tracking 36595 as yet unmatched pairs. 1692 records in RAM.
INFO 2026-06-03 20:01:31 MarkDuplicates Read 24,000,000 records. Elapsed time: 00:01:35s. Time for last 1,000,000: 4s. Last read position: chr1:43,620,841
INFO 2026-06-03 20:01:31 MarkDuplicates Tracking 36491 as yet unmatched pairs. 91 records in RAM.
INFO 2026-06-03 20:01:34 MarkDuplicates Read 25,000,000 records. Elapsed time: 00:01:38s. Time for last 1,000,000: 2s. Last read position: chr1:46,032,251
INFO 2026-06-03 20:01:34 MarkDuplicates Tracking 38111 as yet unmatched pairs. 161 records in RAM.
INFO 2026-06-03 20:01:37 MarkDuplicates Read 26,000,000 records. Elapsed time: 00:01:41s. Time for last 1,000,000: 2s. Last read position: chr1:53,038,953
INFO 2026-06-03 20:01:37 MarkDuplicates Tracking 39630 as yet unmatched pairs. 231 records in RAM.
INFO 2026-06-03 20:01:41 MarkDuplicates Read 27,000,000 records. Elapsed time: 00:01:45s. Time for last 1,000,000: 4s. Last read position: chr1:64,673,208
INFO 2026-06-03 20:01:41 MarkDuplicates Tracking 40721 as yet unmatched pairs. 55 records in RAM.
INFO 2026-06-03 20:01:45 MarkDuplicates Read 28,000,000 records. Elapsed time: 00:01:49s. Time for last 1,000,000: 4s. Last read position: chr1:78,046,140
INFO 2026-06-03 20:01:45 MarkDuplicates Tracking 41905 as yet unmatched pairs. 115 records in RAM.
INFO 2026-06-03 20:01:48 MarkDuplicates Read 29,000,000 records. Elapsed time: 00:01:52s. Time for last 1,000,000: 2s. Last read position: chr1:94,179,759
INFO 2026-06-03 20:01:48 MarkDuplicates Tracking 43171 as yet unmatched pairs. 52 records in RAM.
INFO 2026-06-03 20:01:50 MarkDuplicates Read 30,000,000 records. Elapsed time: 00:01:54s. Time for last 1,000,000: 2s. Last read position: chr1:108,992,692
INFO 2026-06-03 20:01:50 MarkDuplicates Tracking 44166 as yet unmatched pairs. 40 records in RAM.
INFO 2026-06-03 20:01:53 MarkDuplicates Read 31,000,000 records. Elapsed time: 00:01:57s. Time for last 1,000,000: 3s. Last read position: chr1:111,756,178
INFO 2026-06-03 20:01:53 MarkDuplicates Tracking 45571 as yet unmatched pairs. 68 records in RAM.
INFO 2026-06-03 20:01:56 MarkDuplicates Read 32,000,000 records. Elapsed time: 00:02:00s. Time for last 1,000,000: 2s. Last read position: chr1:114,430,898
INFO 2026-06-03 20:01:56 MarkDuplicates Tracking 47757 as yet unmatched pairs. 1072 records in RAM.
INFO 2026-06-03 20:01:59 MarkDuplicates Read 33,000,000 records. Elapsed time: 00:02:02s. Time for last 1,000,000: 2s. Last read position: chr1:116,397,901
INFO 2026-06-03 20:01:59 MarkDuplicates Tracking 48901 as yet unmatched pairs. 894 records in RAM.
INFO 2026-06-03 20:02:02 MarkDuplicates Read 34,000,000 records. Elapsed time: 00:02:06s. Time for last 1,000,000: 3s. Last read position: chr1:119,798,540
INFO 2026-06-03 20:02:02 MarkDuplicates Tracking 53036 as yet unmatched pairs. 3702 records in RAM.
INFO 2026-06-03 20:02:06 MarkDuplicates Read 35,000,000 records. Elapsed time: 00:02:10s. Time for last 1,000,000: 4s. Last read position: chr1:143,905,660
INFO 2026-06-03 20:02:06 MarkDuplicates Tracking 50559 as yet unmatched pairs. 30 records in RAM.
INFO 2026-06-03 20:02:09 MarkDuplicates Read 36,000,000 records. Elapsed time: 00:02:13s. Time for last 1,000,000: 2s. Last read position: chr1:147,167,831
INFO 2026-06-03 20:02:09 MarkDuplicates Tracking 51321 as yet unmatched pairs. 129 records in RAM.
INFO 2026-06-03 20:02:12 MarkDuplicates Read 37,000,000 records. Elapsed time: 00:02:16s. Time for last 1,000,000: 3s. Last read position: chr1:149,480,787
INFO 2026-06-03 20:02:12 MarkDuplicates Tracking 51974 as yet unmatched pairs. 45 records in RAM.
INFO 2026-06-03 20:02:15 MarkDuplicates Read 38,000,000 records. Elapsed time: 00:02:19s. Time for last 1,000,000: 3s. Last read position: chr1:150,346,082
INFO 2026-06-03 20:02:15 MarkDuplicates Tracking 53113 as yet unmatched pairs. 109 records in RAM.
INFO 2026-06-03 20:02:19 MarkDuplicates Read 39,000,000 records. Elapsed time: 00:02:23s. Time for last 1,000,000: 3s. Last read position: chr1:151,302,282
INFO 2026-06-03 20:02:19 MarkDuplicates Tracking 54539 as yet unmatched pairs. 188 records in RAM.
INFO 2026-06-03 20:02:22 MarkDuplicates Read 40,000,000 records. Elapsed time: 00:02:25s. Time for last 1,000,000: 2s. Last read position: chr1:153,614,917
INFO 2026-06-03 20:02:22 MarkDuplicates Tracking 56148 as yet unmatched pairs. 358 records in RAM.
INFO 2026-06-03 20:02:29 MarkDuplicates Read 41,000,000 records. Elapsed time: 00:02:33s. Time for last 1,000,000: 7s. Last read position: chr1:154,157,659
INFO 2026-06-03 20:02:29 MarkDuplicates Tracking 61555 as yet unmatched pairs. 4473 records in RAM.
INFO 2026-06-03 20:02:33 MarkDuplicates Read 42,000,000 records. Elapsed time: 00:02:37s. Time for last 1,000,000: 4s. Last read position: chr1:154,405,599
INFO 2026-06-03 20:02:33 MarkDuplicates Tracking 58526 as yet unmatched pairs. 174 records in RAM.
INFO 2026-06-03 20:02:37 MarkDuplicates Read 43,000,000 records. Elapsed time: 00:02:41s. Time for last 1,000,000: 4s. Last read position: chr1:155,062,256
INFO 2026-06-03 20:02:37 MarkDuplicates Tracking 60684 as yet unmatched pairs. 763 records in RAM.
INFO 2026-06-03 20:02:41 MarkDuplicates Read 44,000,000 records. Elapsed time: 00:02:45s. Time for last 1,000,000: 3s. Last read position: chr1:155,616,196
INFO 2026-06-03 20:02:41 MarkDuplicates Tracking 61306 as yet unmatched pairs. 71 records in RAM.
INFO 2026-06-03 20:02:45 MarkDuplicates Read 45,000,000 records. Elapsed time: 00:02:48s. Time for last 1,000,000: 3s. Last read position: chr1:156,114,844
INFO 2026-06-03 20:02:45 MarkDuplicates Tracking 63118 as yet unmatched pairs. 479 records in RAM.
INFO 2026-06-03 20:02:50 MarkDuplicates Read 46,000,000 records. Elapsed time: 00:02:54s. Time for last 1,000,000: 5s. Last read position: chr1:156,293,492
INFO 2026-06-03 20:02:50 MarkDuplicates Tracking 64987 as yet unmatched pairs. 262 records in RAM.
INFO 2026-06-03 20:02:53 MarkDuplicates Read 47,000,000 records. Elapsed time: 00:02:57s. Time for last 1,000,000: 3s. Last read position: chr1:158,944,934
INFO 2026-06-03 20:02:53 MarkDuplicates Tracking 66250 as yet unmatched pairs. 32 records in RAM.
INFO 2026-06-03 20:02:56 MarkDuplicates Read 48,000,000 records. Elapsed time: 00:03:00s. Time for last 1,000,000: 3s. Last read position: chr1:161,209,244
INFO 2026-06-03 20:02:56 MarkDuplicates Tracking 67993 as yet unmatched pairs. 288 records in RAM.
INFO 2026-06-03 20:02:59 MarkDuplicates Read 49,000,000 records. Elapsed time: 00:03:03s. Time for last 1,000,000: 3s. Last read position: chr1:167,553,522
INFO 2026-06-03 20:02:59 MarkDuplicates Tracking 69157 as yet unmatched pairs. 138 records in RAM.
INFO 2026-06-03 20:03:03 MarkDuplicates Read 50,000,000 records. Elapsed time: 00:03:07s. Time for last 1,000,000: 3s. Last read position: chr1:169,525,905
INFO 2026-06-03 20:03:03 MarkDuplicates Tracking 70890 as yet unmatched pairs. 323 records in RAM.
INFO 2026-06-03 20:03:06 MarkDuplicates Read 51,000,000 records. Elapsed time: 00:03:10s. Time for last 1,000,000: 3s. Last read position: chr1:171,523,344
INFO 2026-06-03 20:03:06 MarkDuplicates Tracking 71927 as yet unmatched pairs. 233 records in RAM.
INFO 2026-06-03 20:03:10 MarkDuplicates Read 52,000,000 records. Elapsed time: 00:03:13s. Time for last 1,000,000: 3s. Last read position: chr1:175,160,147
INFO 2026-06-03 20:03:10 MarkDuplicates Tracking 73252 as yet unmatched pairs. 391 records in RAM.
INFO 2026-06-03 20:03:14 MarkDuplicates Read 53,000,000 records. Elapsed time: 00:03:18s. Time for last 1,000,000: 4s. Last read position: chr1:182,386,349
INFO 2026-06-03 20:03:14 MarkDuplicates Tracking 74900 as yet unmatched pairs. 539 records in RAM.
INFO 2026-06-03 20:03:18 MarkDuplicates Read 54,000,000 records. Elapsed time: 00:03:22s. Time for last 1,000,000: 3s. Last read position: chr1:185,308,840
INFO 2026-06-03 20:03:18 MarkDuplicates Tracking 76243 as yet unmatched pairs. 498 records in RAM.
INFO 2026-06-03 20:03:21 MarkDuplicates Read 55,000,000 records. Elapsed time: 00:03:25s. Time for last 1,000,000: 3s. Last read position: chr1:197,103,016
INFO 2026-06-03 20:03:21 MarkDuplicates Tracking 76984 as yet unmatched pairs. 93 records in RAM.
INFO 2026-06-03 20:03:25 MarkDuplicates Read 56,000,000 records. Elapsed time: 00:03:29s. Time for last 1,000,000: 3s. Last read position: chr1:201,783,458
INFO 2026-06-03 20:03:25 MarkDuplicates Tracking 78479 as yet unmatched pairs. 112 records in RAM.
INFO 2026-06-03 20:03:29 MarkDuplicates Read 57,000,000 records. Elapsed time: 00:03:33s. Time for last 1,000,000: 3s. Last read position: chr1:203,798,355
INFO 2026-06-03 20:03:29 MarkDuplicates Tracking 79902 as yet unmatched pairs. 183 records in RAM.
INFO 2026-06-03 20:03:33 MarkDuplicates Read 58,000,000 records. Elapsed time: 00:03:37s. Time for last 1,000,000: 4s. Last read position: chr1:204,486,996
INFO 2026-06-03 20:03:33 MarkDuplicates Tracking 81121 as yet unmatched pairs. 21 records in RAM.
INFO 2026-06-03 20:03:37 MarkDuplicates Read 59,000,000 records. Elapsed time: 00:03:41s. Time for last 1,000,000: 3s. Last read position: chr1:206,939,170
INFO 2026-06-03 20:03:37 MarkDuplicates Tracking 82679 as yet unmatched pairs. 140 records in RAM.
INFO 2026-06-03 20:03:40 MarkDuplicates Read 60,000,000 records. Elapsed time: 00:03:44s. Time for last 1,000,000: 2s. Last read position: chr1:209,618,532
INFO 2026-06-03 20:03:40 MarkDuplicates Tracking 84001 as yet unmatched pairs. 117 records in RAM.
INFO 2026-06-03 20:03:43 MarkDuplicates Read 61,000,000 records. Elapsed time: 00:03:47s. Time for last 1,000,000: 3s. Last read position: chr1:214,642,260
INFO 2026-06-03 20:03:43 MarkDuplicates Tracking 85369 as yet unmatched pairs. 96 records in RAM.
INFO 2026-06-03 20:03:46 MarkDuplicates Read 62,000,000 records. Elapsed time: 00:03:50s. Time for last 1,000,000: 2s. Last read position: chr1:222,749,993
INFO 2026-06-03 20:03:46 MarkDuplicates Tracking 86544 as yet unmatched pairs. 30 records in RAM.
INFO 2026-06-03 20:03:49 MarkDuplicates Read 63,000,000 records. Elapsed time: 00:03:53s. Time for last 1,000,000: 2s. Last read position: chr1:225,418,160
INFO 2026-06-03 20:03:49 MarkDuplicates Tracking 88186 as yet unmatched pairs. 280 records in RAM.
INFO 2026-06-03 20:03:52 MarkDuplicates Read 64,000,000 records. Elapsed time: 00:03:56s. Time for last 1,000,000: 2s. Last read position: chr1:226,982,677
INFO 2026-06-03 20:03:52 MarkDuplicates Tracking 89210 as yet unmatched pairs. 54 records in RAM.
INFO 2026-06-03 20:03:56 MarkDuplicates Read 65,000,000 records. Elapsed time: 00:04:00s. Time for last 1,000,000: 4s. Last read position: chr1:230,178,250
INFO 2026-06-03 20:03:56 MarkDuplicates Tracking 90859 as yet unmatched pairs. 69 records in RAM.
INFO 2026-06-03 20:04:00 MarkDuplicates Read 66,000,000 records. Elapsed time: 00:04:04s. Time for last 1,000,000: 4s. Last read position: chr1:234,608,971
INFO 2026-06-03 20:04:00 MarkDuplicates Tracking 92786 as yet unmatched pairs. 356 records in RAM.
INFO 2026-06-03 20:04:04 MarkDuplicates Read 67,000,000 records. Elapsed time: 00:04:08s. Time for last 1,000,000: 3s. Last read position: chr1:243,214,270
INFO 2026-06-03 20:04:04 MarkDuplicates Tracking 93887 as yet unmatched pairs. 100 records in RAM.
INFO 2026-06-03 20:04:07 MarkDuplicates Read 68,000,000 records. Elapsed time: 00:04:11s. Time for last 1,000,000: 3s. Last read position: chr1:248,916,648
INFO 2026-06-03 20:04:07 MarkDuplicates Tracking 95220 as yet unmatched pairs. 5 records in RAM.
INFO 2026-06-03 20:04:12 MarkDuplicates Read 69,000,000 records. Elapsed time: 00:04:16s. Time for last 1,000,000: 5s. Last read position: chr2:15,558,580
INFO 2026-06-03 20:04:12 MarkDuplicates Tracking 96703 as yet unmatched pairs. 96048 records in RAM.
INFO 2026-06-03 20:04:17 MarkDuplicates Read 70,000,000 records. Elapsed time: 00:04:21s. Time for last 1,000,000: 5s. Last read position: chr2:26,375,044
INFO 2026-06-03 20:04:17 MarkDuplicates Tracking 98174 as yet unmatched pairs. 97510 records in RAM.
INFO 2026-06-03 20:04:20 MarkDuplicates Read 71,000,000 records. Elapsed time: 00:04:24s. Time for last 1,000,000: 3s. Last read position: chr2:28,925,079
INFO 2026-06-03 20:04:20 MarkDuplicates Tracking 99679 as yet unmatched pairs. 99003 records in RAM.
INFO 2026-06-03 20:04:24 MarkDuplicates Read 72,000,000 records. Elapsed time: 00:04:28s. Time for last 1,000,000: 3s. Last read position: chr2:32,916,262
INFO 2026-06-03 20:04:24 MarkDuplicates Tracking 145223 as yet unmatched pairs. 95277 records in RAM.
INFO 2026-06-03 20:04:28 MarkDuplicates Read 73,000,000 records. Elapsed time: 00:04:32s. Time for last 1,000,000: 4s. Last read position: chr2:32,916,370
INFO 2026-06-03 20:04:28 MarkDuplicates Tracking 635024 as yet unmatched pairs. 52062 records in RAM.
INFO 2026-06-03 20:04:30 MarkDuplicates Read 74,000,000 records. Elapsed time: 00:04:34s. Time for last 1,000,000: 2s. Last read position: chr2:32,916,424
INFO 2026-06-03 20:04:30 MarkDuplicates Tracking 703139 as yet unmatched pairs. 45795 records in RAM.
INFO 2026-06-03 20:04:34 MarkDuplicates Read 75,000,000 records. Elapsed time: 00:04:38s. Time for last 1,000,000: 3s. Last read position: chr2:42,303,318
INFO 2026-06-03 20:04:34 MarkDuplicates Tracking 712579 as yet unmatched pairs. 44335 records in RAM.
INFO 2026-06-03 20:04:37 MarkDuplicates Read 76,000,000 records. Elapsed time: 00:04:41s. Time for last 1,000,000: 3s. Last read position: chr2:47,160,706
INFO 2026-06-03 20:04:37 MarkDuplicates Tracking 712480 as yet unmatched pairs. 44231 records in RAM.
INFO 2026-06-03 20:04:42 MarkDuplicates Read 77,000,000 records. Elapsed time: 00:04:46s. Time for last 1,000,000: 4s. Last read position: chr2:54,616,242
INFO 2026-06-03 20:04:42 MarkDuplicates Tracking 709809 as yet unmatched pairs. 41548 records in RAM.
INFO 2026-06-03 20:04:46 MarkDuplicates Read 78,000,000 records. Elapsed time: 00:04:50s. Time for last 1,000,000: 4s. Last read position: chr2:55,026,444
INFO 2026-06-03 20:04:46 MarkDuplicates Tracking 707917 as yet unmatched pairs. 39649 records in RAM.
INFO 2026-06-03 20:04:50 MarkDuplicates Read 79,000,000 records. Elapsed time: 00:04:54s. Time for last 1,000,000: 3s. Last read position: chr2:61,350,290
INFO 2026-06-03 20:04:50 MarkDuplicates Tracking 706633 as yet unmatched pairs. 38349 records in RAM.
INFO 2026-06-03 20:04:53 MarkDuplicates Read 80,000,000 records. Elapsed time: 00:04:57s. Time for last 1,000,000: 3s. Last read position: chr2:65,313,651
INFO 2026-06-03 20:04:53 MarkDuplicates Tracking 705260 as yet unmatched pairs. 36967 records in RAM.
INFO 2026-06-03 20:04:57 MarkDuplicates Read 81,000,000 records. Elapsed time: 00:05:01s. Time for last 1,000,000: 3s. Last read position: chr2:70,981,887
INFO 2026-06-03 20:04:57 MarkDuplicates Tracking 703898 as yet unmatched pairs. 35592 records in RAM.
INFO 2026-06-03 20:05:01 MarkDuplicates Read 82,000,000 records. Elapsed time: 00:05:05s. Time for last 1,000,000: 3s. Last read position: chr2:74,209,886
INFO 2026-06-03 20:05:01 MarkDuplicates Tracking 702663 as yet unmatched pairs. 34354 records in RAM.
INFO 2026-06-03 20:05:04 MarkDuplicates Read 83,000,000 records. Elapsed time: 00:05:08s. Time for last 1,000,000: 3s. Last read position: chr2:84,423,717
INFO 2026-06-03 20:05:04 MarkDuplicates Tracking 701368 as yet unmatched pairs. 33054 records in RAM.
INFO 2026-06-03 20:05:07 MarkDuplicates Read 84,000,000 records. Elapsed time: 00:05:11s. Time for last 1,000,000: 3s. Last read position: chr2:86,170,809
INFO 2026-06-03 20:05:07 MarkDuplicates Tracking 700065 as yet unmatched pairs. 31748 records in RAM.
INFO 2026-06-03 20:05:11 MarkDuplicates Read 85,000,000 records. Elapsed time: 00:05:14s. Time for last 1,000,000: 3s. Last read position: chr2:95,825,381
INFO 2026-06-03 20:05:11 MarkDuplicates Tracking 698711 as yet unmatched pairs. 30384 records in RAM.
INFO 2026-06-03 20:05:14 MarkDuplicates Read 86,000,000 records. Elapsed time: 00:05:18s. Time for last 1,000,000: 3s. Last read position: chr2:95,915,995
INFO 2026-06-03 20:05:14 MarkDuplicates Tracking 698885 as yet unmatched pairs. 30541 records in RAM.
INFO 2026-06-03 20:05:17 MarkDuplicates Read 87,000,000 records. Elapsed time: 00:05:21s. Time for last 1,000,000: 3s. Last read position: chr2:96,817,295
INFO 2026-06-03 20:05:17 MarkDuplicates Tracking 696891 as yet unmatched pairs. 28531 records in RAM.
INFO 2026-06-03 20:05:21 MarkDuplicates Read 88,000,000 records. Elapsed time: 00:05:25s. Time for last 1,000,000: 3s. Last read position: chr2:98,797,474
INFO 2026-06-03 20:05:21 MarkDuplicates Tracking 695914 as yet unmatched pairs. 27546 records in RAM.
INFO 2026-06-03 20:05:24 MarkDuplicates Read 89,000,000 records. Elapsed time: 00:05:27s. Time for last 1,000,000: 2s. Last read position: chr2:105,049,256
INFO 2026-06-03 20:05:24 MarkDuplicates Tracking 694638 as yet unmatched pairs. 26260 records in RAM.
INFO 2026-06-03 20:05:26 MarkDuplicates Read 90,000,000 records. Elapsed time: 00:05:30s. Time for last 1,000,000: 2s. Last read position: chr2:108,719,676
INFO 2026-06-03 20:05:26 MarkDuplicates Tracking 695540 as yet unmatched pairs. 27154 records in RAM.
INFO 2026-06-03 20:05:28 MarkDuplicates Read 91,000,000 records. Elapsed time: 00:05:32s. Time for last 1,000,000: 2s. Last read position: chr2:108,765,785
INFO 2026-06-03 20:05:28 MarkDuplicates Tracking 694758 as yet unmatched pairs. 26367 records in RAM.
INFO 2026-06-03 20:05:31 MarkDuplicates Read 92,000,000 records. Elapsed time: 00:05:35s. Time for last 1,000,000: 2s. Last read position: chr2:109,836,445
INFO 2026-06-03 20:05:31 MarkDuplicates Tracking 692165 as yet unmatched pairs. 23765 records in RAM.
INFO 2026-06-03 20:05:33 MarkDuplicates Read 93,000,000 records. Elapsed time: 00:05:36s. Time for last 1,000,000: 1s. Last read position: chr2:112,390,143
INFO 2026-06-03 20:05:33 MarkDuplicates Tracking 691409 as yet unmatched pairs. 23004 records in RAM.
INFO 2026-06-03 20:05:35 MarkDuplicates Read 94,000,000 records. Elapsed time: 00:05:39s. Time for last 1,000,000: 2s. Last read position: chr2:127,050,808
INFO 2026-06-03 20:05:35 MarkDuplicates Tracking 690452 as yet unmatched pairs. 22031 records in RAM.
INFO 2026-06-03 20:05:37 MarkDuplicates Read 95,000,000 records. Elapsed time: 00:05:41s. Time for last 1,000,000: 2s. Last read position: chr2:135,153,679
INFO 2026-06-03 20:05:37 MarkDuplicates Tracking 688983 as yet unmatched pairs. 20551 records in RAM.
INFO 2026-06-03 20:05:40 MarkDuplicates Read 96,000,000 records. Elapsed time: 00:05:44s. Time for last 1,000,000: 2s. Last read position: chr2:159,178,809
INFO 2026-06-03 20:05:40 MarkDuplicates Tracking 687790 as yet unmatched pairs. 19353 records in RAM.
INFO 2026-06-03 20:05:43 MarkDuplicates Read 97,000,000 records. Elapsed time: 00:05:47s. Time for last 1,000,000: 3s. Last read position: chr2:171,517,648
INFO 2026-06-03 20:05:43 MarkDuplicates Tracking 686369 as yet unmatched pairs. 17910 records in RAM.
INFO 2026-06-03 20:05:48 MarkDuplicates Read 98,000,000 records. Elapsed time: 00:05:52s. Time for last 1,000,000: 4s. Last read position: chr2:178,547,967
INFO 2026-06-03 20:05:48 MarkDuplicates Tracking 685168 as yet unmatched pairs. 16697 records in RAM.
INFO 2026-06-03 20:05:51 MarkDuplicates Read 99,000,000 records. Elapsed time: 00:05:55s. Time for last 1,000,000: 3s. Last read position: chr2:188,998,269
INFO 2026-06-03 20:05:51 MarkDuplicates Tracking 684391 as yet unmatched pairs. 15918 records in RAM.
INFO 2026-06-03 20:05:55 MarkDuplicates Read 100,000,000 records. Elapsed time: 00:05:59s. Time for last 1,000,000: 3s. Last read position: chr2:190,982,389
INFO 2026-06-03 20:05:55 MarkDuplicates Tracking 682508 as yet unmatched pairs. 14028 records in RAM.
INFO 2026-06-03 20:05:58 MarkDuplicates Read 101,000,000 records. Elapsed time: 00:06:02s. Time for last 1,000,000: 3s. Last read position: chr2:201,286,458
INFO 2026-06-03 20:05:58 MarkDuplicates Tracking 681057 as yet unmatched pairs. 12566 records in RAM.
INFO 2026-06-03 20:06:02 MarkDuplicates Read 102,000,000 records. Elapsed time: 00:06:06s. Time for last 1,000,000: 3s. Last read position: chr2:210,016,514
INFO 2026-06-03 20:06:02 MarkDuplicates Tracking 680013 as yet unmatched pairs. 11503 records in RAM.
INFO 2026-06-03 20:06:05 MarkDuplicates Read 103,000,000 records. Elapsed time: 00:06:09s. Time for last 1,000,000: 3s. Last read position: chr2:215,379,128
INFO 2026-06-03 20:06:05 MarkDuplicates Tracking 679551 as yet unmatched pairs. 11034 records in RAM.
INFO 2026-06-03 20:06:09 MarkDuplicates Read 104,000,000 records. Elapsed time: 00:06:13s. Time for last 1,000,000: 3s. Last read position: chr2:215,409,597
INFO 2026-06-03 20:06:09 MarkDuplicates Tracking 678847 as yet unmatched pairs. 10330 records in RAM.
INFO 2026-06-03 20:06:13 MarkDuplicates Read 105,000,000 records. Elapsed time: 00:06:16s. Time for last 1,000,000: 3s. Last read position: chr2:216,679,022
INFO 2026-06-03 20:06:13 MarkDuplicates Tracking 676156 as yet unmatched pairs. 7628 records in RAM.
INFO 2026-06-03 20:06:16 MarkDuplicates Read 106,000,000 records. Elapsed time: 00:06:20s. Time for last 1,000,000: 3s. Last read position: chr2:219,250,961
INFO 2026-06-03 20:06:16 MarkDuplicates Tracking 674757 as yet unmatched pairs. 6221 records in RAM.
INFO 2026-06-03 20:06:20 MarkDuplicates Read 107,000,000 records. Elapsed time: 00:06:24s. Time for last 1,000,000: 4s. Last read position: chr2:230,400,952
INFO 2026-06-03 20:06:20 MarkDuplicates Tracking 673113 as yet unmatched pairs. 4548 records in RAM.
INFO 2026-06-03 20:06:23 MarkDuplicates Read 108,000,000 records. Elapsed time: 00:06:27s. Time for last 1,000,000: 3s. Last read position: chr2:233,456,953
INFO 2026-06-03 20:06:23 MarkDuplicates Tracking 671821 as yet unmatched pairs. 3252 records in RAM.
INFO 2026-06-03 20:06:26 MarkDuplicates Read 109,000,000 records. Elapsed time: 00:06:30s. Time for last 1,000,000: 2s. Last read position: chr2:238,255,908
INFO 2026-06-03 20:06:26 MarkDuplicates Tracking 670166 as yet unmatched pairs. 1572 records in RAM.
INFO 2026-06-03 20:06:29 MarkDuplicates Read 110,000,000 records. Elapsed time: 00:06:33s. Time for last 1,000,000: 2s. Last read position: chr3:4,376,335
INFO 2026-06-03 20:06:29 MarkDuplicates Tracking 668636 as yet unmatched pairs. 32730 records in RAM.
INFO 2026-06-03 20:06:33 MarkDuplicates Read 111,000,000 records. Elapsed time: 00:06:37s. Time for last 1,000,000: 3s. Last read position: chr3:12,660,905
INFO 2026-06-03 20:06:33 MarkDuplicates Tracking 667159 as yet unmatched pairs. 31247 records in RAM.
INFO 2026-06-03 20:06:37 MarkDuplicates Read 112,000,000 records. Elapsed time: 00:06:41s. Time for last 1,000,000: 4s. Last read position: chr3:25,618,807
INFO 2026-06-03 20:06:37 MarkDuplicates Tracking 666003 as yet unmatched pairs. 30083 records in RAM.
INFO 2026-06-03 20:06:41 MarkDuplicates Read 113,000,000 records. Elapsed time: 00:06:45s. Time for last 1,000,000: 4s. Last read position: chr3:38,005,802
INFO 2026-06-03 20:06:41 MarkDuplicates Tracking 664731 as yet unmatched pairs. 28785 records in RAM.
INFO 2026-06-03 20:06:44 MarkDuplicates Read 114,000,000 records. Elapsed time: 00:06:48s. Time for last 1,000,000: 3s. Last read position: chr3:41,898,443
INFO 2026-06-03 20:06:44 MarkDuplicates Tracking 663236 as yet unmatched pairs. 27283 records in RAM.
INFO 2026-06-03 20:06:48 MarkDuplicates Read 115,000,000 records. Elapsed time: 00:06:52s. Time for last 1,000,000: 3s. Last read position: chr3:47,008,322
INFO 2026-06-03 20:06:48 MarkDuplicates Tracking 661766 as yet unmatched pairs. 25808 records in RAM.
INFO 2026-06-03 20:06:52 MarkDuplicates Read 116,000,000 records. Elapsed time: 00:06:55s. Time for last 1,000,000: 3s. Last read position: chr3:48,580,882
INFO 2026-06-03 20:06:52 MarkDuplicates Tracking 660329 as yet unmatched pairs. 24358 records in RAM.
INFO 2026-06-03 20:06:59 MarkDuplicates Read 117,000,000 records. Elapsed time: 00:07:03s. Time for last 1,000,000: 7s. Last read position: chr3:49,360,289
INFO 2026-06-03 20:06:59 MarkDuplicates Tracking 659060 as yet unmatched pairs. 23084 records in RAM.
INFO 2026-06-03 20:07:02 MarkDuplicates Read 118,000,000 records. Elapsed time: 00:07:06s. Time for last 1,000,000: 3s. Last read position: chr3:51,419,856
INFO 2026-06-03 20:07:02 MarkDuplicates Tracking 657273 as yet unmatched pairs. 21293 records in RAM.
INFO 2026-06-03 20:07:05 MarkDuplicates Read 119,000,000 records. Elapsed time: 00:07:09s. Time for last 1,000,000: 2s. Last read position: chr3:52,692,884
INFO 2026-06-03 20:07:05 MarkDuplicates Tracking 655940 as yet unmatched pairs. 19939 records in RAM.
INFO 2026-06-03 20:07:08 MarkDuplicates Read 120,000,000 records. Elapsed time: 00:07:11s. Time for last 1,000,000: 2s. Last read position: chr3:58,149,901
INFO 2026-06-03 20:07:08 MarkDuplicates Tracking 654659 as yet unmatched pairs. 18647 records in RAM.
INFO 2026-06-03 20:07:10 MarkDuplicates Read 121,000,000 records. Elapsed time: 00:07:14s. Time for last 1,000,000: 2s. Last read position: chr3:69,181,237
INFO 2026-06-03 20:07:10 MarkDuplicates Tracking 653218 as yet unmatched pairs. 17190 records in RAM.
INFO 2026-06-03 20:07:13 MarkDuplicates Read 122,000,000 records. Elapsed time: 00:07:16s. Time for last 1,000,000: 2s. Last read position: chr3:100,728,758
INFO 2026-06-03 20:07:13 MarkDuplicates Tracking 652895 as yet unmatched pairs. 16844 records in RAM.
INFO 2026-06-03 20:07:15 MarkDuplicates Read 123,000,000 records. Elapsed time: 00:07:19s. Time for last 1,000,000: 2s. Last read position: chr3:113,655,869
INFO 2026-06-03 20:07:15 MarkDuplicates Tracking 650775 as yet unmatched pairs. 14706 records in RAM.
INFO 2026-06-03 20:07:18 MarkDuplicates Read 124,000,000 records. Elapsed time: 00:07:21s. Time for last 1,000,000: 2s. Last read position: chr3:121,719,679
INFO 2026-06-03 20:07:18 MarkDuplicates Tracking 649723 as yet unmatched pairs. 13642 records in RAM.
INFO 2026-06-03 20:07:20 MarkDuplicates Read 125,000,000 records. Elapsed time: 00:07:24s. Time for last 1,000,000: 2s. Last read position: chr3:125,013,731
INFO 2026-06-03 20:07:20 MarkDuplicates Tracking 648103 as yet unmatched pairs. 12004 records in RAM.
INFO 2026-06-03 20:07:23 MarkDuplicates Read 126,000,000 records. Elapsed time: 00:07:27s. Time for last 1,000,000: 3s. Last read position: chr3:128,798,030
INFO 2026-06-03 20:07:23 MarkDuplicates Tracking 646917 as yet unmatched pairs. 10808 records in RAM.
INFO 2026-06-03 20:07:27 MarkDuplicates Read 127,000,000 records. Elapsed time: 00:07:31s. Time for last 1,000,000: 3s. Last read position: chr3:131,471,174
INFO 2026-06-03 20:07:27 MarkDuplicates Tracking 645301 as yet unmatched pairs. 9183 records in RAM.
INFO 2026-06-03 20:07:31 MarkDuplicates Read 128,000,000 records. Elapsed time: 00:07:34s. Time for last 1,000,000: 3s. Last read position: chr3:139,561,063
INFO 2026-06-03 20:07:31 MarkDuplicates Tracking 643669 as yet unmatched pairs. 7538 records in RAM.
INFO 2026-06-03 20:07:34 MarkDuplicates Read 129,000,000 records. Elapsed time: 00:07:38s. Time for last 1,000,000: 3s. Last read position: chr3:150,410,383
INFO 2026-06-03 20:07:34 MarkDuplicates Tracking 642385 as yet unmatched pairs. 6244 records in RAM.
INFO 2026-06-03 20:07:38 MarkDuplicates Read 130,000,000 records. Elapsed time: 00:07:42s. Time for last 1,000,000: 3s. Last read position: chr3:170,129,236
INFO 2026-06-03 20:07:38 MarkDuplicates Tracking 641239 as yet unmatched pairs. 5085 records in RAM.
INFO 2026-06-03 20:07:41 MarkDuplicates Read 131,000,000 records. Elapsed time: 00:07:45s. Time for last 1,000,000: 3s. Last read position: chr3:184,186,844
INFO 2026-06-03 20:07:41 MarkDuplicates Tracking 639889 as yet unmatched pairs. 3721 records in RAM.
INFO 2026-06-03 20:07:45 MarkDuplicates Read 132,000,000 records. Elapsed time: 00:07:49s. Time for last 1,000,000: 3s. Last read position: chr3:186,791,751
INFO 2026-06-03 20:07:45 MarkDuplicates Tracking 638448 as yet unmatched pairs. 2275 records in RAM.
INFO 2026-06-03 20:07:48 MarkDuplicates Read 133,000,000 records. Elapsed time: 00:07:52s. Time for last 1,000,000: 3s. Last read position: chr3:195,726,061
INFO 2026-06-03 20:07:48 MarkDuplicates Tracking 637502 as yet unmatched pairs. 1316 records in RAM.
INFO 2026-06-03 20:07:52 MarkDuplicates Read 134,000,000 records. Elapsed time: 00:07:56s. Time for last 1,000,000: 3s. Last read position: chr4:443,867
INFO 2026-06-03 20:07:52 MarkDuplicates Tracking 636331 as yet unmatched pairs. 23288 records in RAM.
INFO 2026-06-03 20:07:57 MarkDuplicates Read 135,000,000 records. Elapsed time: 00:08:01s. Time for last 1,000,000: 4s. Last read position: chr4:1,225,366
INFO 2026-06-03 20:07:57 MarkDuplicates Tracking 634525 as yet unmatched pairs. 21465 records in RAM.
INFO 2026-06-03 20:08:00 MarkDuplicates Read 136,000,000 records. Elapsed time: 00:08:04s. Time for last 1,000,000: 3s. Last read position: chr4:2,625,309
INFO 2026-06-03 20:08:00 MarkDuplicates Tracking 632664 as yet unmatched pairs. 19586 records in RAM.
INFO 2026-06-03 20:08:04 MarkDuplicates Read 137,000,000 records. Elapsed time: 00:08:08s. Time for last 1,000,000: 3s. Last read position: chr4:6,291,266
INFO 2026-06-03 20:08:04 MarkDuplicates Tracking 631118 as yet unmatched pairs. 18035 records in RAM.
INFO 2026-06-03 20:08:06 MarkDuplicates Read 138,000,000 records. Elapsed time: 00:08:10s. Time for last 1,000,000: 2s. Last read position: chr4:10,077,783
INFO 2026-06-03 20:08:06 MarkDuplicates Tracking 629852 as yet unmatched pairs. 16747 records in RAM.
INFO 2026-06-03 20:08:10 MarkDuplicates Read 139,000,000 records. Elapsed time: 00:08:14s. Time for last 1,000,000: 3s. Last read position: chr4:20,596,412
INFO 2026-06-03 20:08:10 MarkDuplicates Tracking 628174 as yet unmatched pairs. 15060 records in RAM.
INFO 2026-06-03 20:08:13 MarkDuplicates Read 140,000,000 records. Elapsed time: 00:08:17s. Time for last 1,000,000: 3s. Last read position: chr4:37,590,313
INFO 2026-06-03 20:08:13 MarkDuplicates Tracking 626826 as yet unmatched pairs. 13707 records in RAM.
INFO 2026-06-03 20:08:17 MarkDuplicates Read 141,000,000 records. Elapsed time: 00:08:20s. Time for last 1,000,000: 3s. Last read position: chr4:41,646,550
INFO 2026-06-03 20:08:17 MarkDuplicates Tracking 625544 as yet unmatched pairs. 12408 records in RAM.
INFO 2026-06-03 20:08:20 MarkDuplicates Read 142,000,000 records. Elapsed time: 00:08:24s. Time for last 1,000,000: 3s. Last read position: chr4:54,277,448
INFO 2026-06-03 20:08:20 MarkDuplicates Tracking 624261 as yet unmatched pairs. 11100 records in RAM.
INFO 2026-06-03 20:08:23 MarkDuplicates Read 143,000,000 records. Elapsed time: 00:08:27s. Time for last 1,000,000: 3s. Last read position: chr4:68,337,341
INFO 2026-06-03 20:08:23 MarkDuplicates Tracking 623053 as yet unmatched pairs. 9888 records in RAM.
INFO 2026-06-03 20:08:26 MarkDuplicates Read 144,000,000 records. Elapsed time: 00:08:30s. Time for last 1,000,000: 3s. Last read position: chr4:76,144,252
INFO 2026-06-03 20:08:26 MarkDuplicates Tracking 621556 as yet unmatched pairs. 8376 records in RAM.
INFO 2026-06-03 20:08:30 MarkDuplicates Read 145,000,000 records. Elapsed time: 00:08:34s. Time for last 1,000,000: 3s. Last read position: chr4:82,454,756
INFO 2026-06-03 20:08:30 MarkDuplicates Tracking 620233 as yet unmatched pairs. 7042 records in RAM.
INFO 2026-06-03 20:08:32 MarkDuplicates Read 146,000,000 records. Elapsed time: 00:08:36s. Time for last 1,000,000: 2s. Last read position: chr4:93,110,784
INFO 2026-06-03 20:08:32 MarkDuplicates Tracking 618971 as yet unmatched pairs. 5763 records in RAM.
INFO 2026-06-03 20:08:35 MarkDuplicates Read 147,000,000 records. Elapsed time: 00:08:38s. Time for last 1,000,000: 2s. Last read position: chr4:112,788,692
INFO 2026-06-03 20:08:35 MarkDuplicates Tracking 617766 as yet unmatched pairs. 4549 records in RAM.
INFO 2026-06-03 20:08:37 MarkDuplicates Read 148,000,000 records. Elapsed time: 00:08:41s. Time for last 1,000,000: 2s. Last read position: chr4:139,698,490
INFO 2026-06-03 20:08:37 MarkDuplicates Tracking 617017 as yet unmatched pairs. 3780 records in RAM.
INFO 2026-06-03 20:08:41 MarkDuplicates Read 149,000,000 records. Elapsed time: 00:08:45s. Time for last 1,000,000: 3s. Last read position: chr4:151,175,450
INFO 2026-06-03 20:08:41 MarkDuplicates Tracking 615898 as yet unmatched pairs. 2643 records in RAM.
INFO 2026-06-03 20:08:45 MarkDuplicates Read 150,000,000 records. Elapsed time: 00:08:49s. Time for last 1,000,000: 4s. Last read position: chr4:177,310,034
INFO 2026-06-03 20:08:45 MarkDuplicates Tracking 614271 as yet unmatched pairs. 998 records in RAM.
INFO 2026-06-03 20:08:49 MarkDuplicates Read 151,000,000 records. Elapsed time: 00:08:53s. Time for last 1,000,000: 3s. Last read position: chr5:314,451
INFO 2026-06-03 20:08:49 MarkDuplicates Tracking 613098 as yet unmatched pairs. 32451 records in RAM.
INFO 2026-06-03 20:08:52 MarkDuplicates Read 152,000,000 records. Elapsed time: 00:08:56s. Time for last 1,000,000: 2s. Last read position: chr5:1,594,479
INFO 2026-06-03 20:08:52 MarkDuplicates Tracking 611288 as yet unmatched pairs. 30633 records in RAM.
INFO 2026-06-03 20:08:54 MarkDuplicates Read 153,000,000 records. Elapsed time: 00:08:58s. Time for last 1,000,000: 2s. Last read position: chr5:10,680,963
INFO 2026-06-03 20:08:54 MarkDuplicates Tracking 610333 as yet unmatched pairs. 29672 records in RAM.
INFO 2026-06-03 20:08:57 MarkDuplicates Read 154,000,000 records. Elapsed time: 00:09:01s. Time for last 1,000,000: 2s. Last read position: chr5:14,487,684
INFO 2026-06-03 20:08:57 MarkDuplicates Tracking 608780 as yet unmatched pairs. 28110 records in RAM.
INFO 2026-06-03 20:08:59 MarkDuplicates Read 155,000,000 records. Elapsed time: 00:09:03s. Time for last 1,000,000: 2s. Last read position: chr5:32,591,570
INFO 2026-06-03 20:08:59 MarkDuplicates Tracking 608005 as yet unmatched pairs. 27320 records in RAM.
INFO 2026-06-03 20:09:10 MarkDuplicates Read 156,000,000 records. Elapsed time: 00:09:14s. Time for last 1,000,000: 10s. Last read position: chr5:40,834,180
INFO 2026-06-03 20:09:10 MarkDuplicates Tracking 606456 as yet unmatched pairs. 25761 records in RAM.
INFO 2026-06-03 20:09:27 MarkDuplicates Read 157,000,000 records. Elapsed time: 00:09:31s. Time for last 1,000,000: 17s. Last read position: chr5:55,941,806
INFO 2026-06-03 20:09:27 MarkDuplicates Tracking 604818 as yet unmatched pairs. 24118 records in RAM.
INFO 2026-06-03 20:09:43 MarkDuplicates Read 158,000,000 records. Elapsed time: 00:09:47s. Time for last 1,000,000: 15s. Last read position: chr5:68,279,648
INFO 2026-06-03 20:09:43 MarkDuplicates Tracking 603696 as yet unmatched pairs. 22973 records in RAM.
INFO 2026-06-03 20:09:51 MarkDuplicates Read 159,000,000 records. Elapsed time: 00:09:55s. Time for last 1,000,000: 8s. Last read position: chr5:72,223,692
INFO 2026-06-03 20:09:51 MarkDuplicates Tracking 602774 as yet unmatched pairs. 22047 records in RAM.
INFO 2026-06-03 20:09:54 MarkDuplicates Read 160,000,000 records. Elapsed time: 00:09:58s. Time for last 1,000,000: 2s. Last read position: chr5:79,641,122
INFO 2026-06-03 20:09:54 MarkDuplicates Tracking 601684 as yet unmatched pairs. 20954 records in RAM.
INFO 2026-06-03 20:09:57 MarkDuplicates Read 161,000,000 records. Elapsed time: 00:10:01s. Time for last 1,000,000: 3s. Last read position: chr5:95,816,531
INFO 2026-06-03 20:09:57 MarkDuplicates Tracking 600313 as yet unmatched pairs. 19576 records in RAM.
INFO 2026-06-03 20:10:01 MarkDuplicates Read 162,000,000 records. Elapsed time: 00:10:04s. Time for last 1,000,000: 3s. Last read position: chr5:119,134,051
INFO 2026-06-03 20:10:01 MarkDuplicates Tracking 599017 as yet unmatched pairs. 18266 records in RAM.
INFO 2026-06-03 20:10:04 MarkDuplicates Read 163,000,000 records. Elapsed time: 00:10:08s. Time for last 1,000,000: 3s. Last read position: chr5:132,824,362
INFO 2026-06-03 20:10:04 MarkDuplicates Tracking 597733 as yet unmatched pairs. 16972 records in RAM.
INFO 2026-06-03 20:10:07 MarkDuplicates Read 164,000,000 records. Elapsed time: 00:10:11s. Time for last 1,000,000: 3s. Last read position: chr5:138,467,328
INFO 2026-06-03 20:10:07 MarkDuplicates Tracking 596337 as yet unmatched pairs. 15560 records in RAM.
INFO 2026-06-03 20:10:11 MarkDuplicates Read 165,000,000 records. Elapsed time: 00:10:14s. Time for last 1,000,000: 3s. Last read position: chr5:140,848,559
INFO 2026-06-03 20:10:11 MarkDuplicates Tracking 594926 as yet unmatched pairs. 14068 records in RAM.
INFO 2026-06-03 20:10:14 MarkDuplicates Read 166,000,000 records. Elapsed time: 00:10:17s. Time for last 1,000,000: 2s. Last read position: chr5:141,410,142
INFO 2026-06-03 20:10:14 MarkDuplicates Tracking 593720 as yet unmatched pairs. 12859 records in RAM.
INFO 2026-06-03 20:10:17 MarkDuplicates Read 167,000,000 records. Elapsed time: 00:10:21s. Time for last 1,000,000: 3s. Last read position: chr5:147,453,557
INFO 2026-06-03 20:10:17 MarkDuplicates Tracking 592097 as yet unmatched pairs. 11221 records in RAM.
INFO 2026-06-03 20:10:20 MarkDuplicates Read 168,000,000 records. Elapsed time: 00:10:24s. Time for last 1,000,000: 3s. Last read position: chr5:150,375,080
INFO 2026-06-03 20:10:20 MarkDuplicates Tracking 590789 as yet unmatched pairs. 9910 records in RAM.
INFO 2026-06-03 20:10:23 MarkDuplicates Read 169,000,000 records. Elapsed time: 00:10:27s. Time for last 1,000,000: 3s. Last read position: chr5:150,649,403
INFO 2026-06-03 20:10:23 MarkDuplicates Tracking 589288 as yet unmatched pairs. 8406 records in RAM.
INFO 2026-06-03 20:10:27 MarkDuplicates Read 170,000,000 records. Elapsed time: 00:10:30s. Time for last 1,000,000: 3s. Last read position: chr5:159,168,872
INFO 2026-06-03 20:10:27 MarkDuplicates Tracking 587893 as yet unmatched pairs. 7006 records in RAM.
INFO 2026-06-03 20:10:30 MarkDuplicates Read 171,000,000 records. Elapsed time: 00:10:34s. Time for last 1,000,000: 3s. Last read position: chr5:171,392,744
INFO 2026-06-03 20:10:30 MarkDuplicates Tracking 592367 as yet unmatched pairs. 11474 records in RAM.
INFO 2026-06-03 20:10:34 MarkDuplicates Read 172,000,000 records. Elapsed time: 00:10:38s. Time for last 1,000,000: 3s. Last read position: chr5:176,578,530
INFO 2026-06-03 20:10:34 MarkDuplicates Tracking 585501 as yet unmatched pairs. 4606 records in RAM.
INFO 2026-06-03 20:10:36 MarkDuplicates Read 173,000,000 records. Elapsed time: 00:10:40s. Time for last 1,000,000: 2s. Last read position: chr5:179,591,620
INFO 2026-06-03 20:10:36 MarkDuplicates Tracking 583928 as yet unmatched pairs. 3022 records in RAM.
INFO 2026-06-03 20:10:39 MarkDuplicates Read 174,000,000 records. Elapsed time: 00:10:43s. Time for last 1,000,000: 2s. Last read position: chr5:179,825,165
INFO 2026-06-03 20:10:39 MarkDuplicates Tracking 584262 as yet unmatched pairs. 3351 records in RAM.
INFO 2026-06-03 20:10:43 MarkDuplicates Read 175,000,000 records. Elapsed time: 00:10:47s. Time for last 1,000,000: 3s. Last read position: chr5:181,242,169
INFO 2026-06-03 20:10:43 MarkDuplicates Tracking 581351 as yet unmatched pairs. 432 records in RAM.
INFO 2026-06-03 20:10:46 MarkDuplicates Read 176,000,000 records. Elapsed time: 00:10:50s. Time for last 1,000,000: 3s. Last read position: chr6:7,246,996
INFO 2026-06-03 20:10:46 MarkDuplicates Tracking 579636 as yet unmatched pairs. 33932 records in RAM.
INFO 2026-06-03 20:10:50 MarkDuplicates Read 177,000,000 records. Elapsed time: 00:10:54s. Time for last 1,000,000: 3s. Last read position: chr6:17,850,357
INFO 2026-06-03 20:10:50 MarkDuplicates Tracking 578179 as yet unmatched pairs. 32457 records in RAM.
INFO 2026-06-03 20:10:53 MarkDuplicates Read 178,000,000 records. Elapsed time: 00:10:57s. Time for last 1,000,000: 3s. Last read position: chr6:26,370,522
INFO 2026-06-03 20:10:53 MarkDuplicates Tracking 576786 as yet unmatched pairs. 31057 records in RAM.
INFO 2026-06-03 20:10:56 MarkDuplicates Read 179,000,000 records. Elapsed time: 00:11:00s. Time for last 1,000,000: 2s. Last read position: chr6:29,942,552
INFO 2026-06-03 20:10:56 MarkDuplicates Tracking 576208 as yet unmatched pairs. 30477 records in RAM.
INFO 2026-06-03 20:10:59 MarkDuplicates Read 180,000,000 records. Elapsed time: 00:11:03s. Time for last 1,000,000: 2s. Last read position: chr6:30,897,399
INFO 2026-06-03 20:10:59 MarkDuplicates Tracking 574085 as yet unmatched pairs. 28350 records in RAM.
INFO 2026-06-03 20:11:01 MarkDuplicates Read 181,000,000 records. Elapsed time: 00:11:05s. Time for last 1,000,000: 2s. Last read position: chr6:31,639,174
INFO 2026-06-03 20:11:01 MarkDuplicates Tracking 572846 as yet unmatched pairs. 27109 records in RAM.
INFO 2026-06-03 20:11:04 MarkDuplicates Read 182,000,000 records. Elapsed time: 00:11:08s. Time for last 1,000,000: 2s. Last read position: chr6:31,963,817
INFO 2026-06-03 20:11:04 MarkDuplicates Tracking 571457 as yet unmatched pairs. 25714 records in RAM.
INFO 2026-06-03 20:11:06 MarkDuplicates Read 183,000,000 records. Elapsed time: 00:11:10s. Time for last 1,000,000: 2s. Last read position: chr6:32,978,338
INFO 2026-06-03 20:11:06 MarkDuplicates Tracking 570289 as yet unmatched pairs. 24533 records in RAM.
INFO 2026-06-03 20:11:10 MarkDuplicates Read 184,000,000 records. Elapsed time: 00:11:14s. Time for last 1,000,000: 3s. Last read position: chr6:33,788,792
INFO 2026-06-03 20:11:10 MarkDuplicates Tracking 568490 as yet unmatched pairs. 22730 records in RAM.
INFO 2026-06-03 20:11:13 MarkDuplicates Read 185,000,000 records. Elapsed time: 00:11:16s. Time for last 1,000,000: 2s. Last read position: chr6:36,985,911
INFO 2026-06-03 20:11:13 MarkDuplicates Tracking 567483 as yet unmatched pairs. 21713 records in RAM.
INFO 2026-06-03 20:11:15 MarkDuplicates Read 186,000,000 records. Elapsed time: 00:11:19s. Time for last 1,000,000: 2s. Last read position: chr6:43,007,412
INFO 2026-06-03 20:11:15 MarkDuplicates Tracking 565642 as yet unmatched pairs. 19865 records in RAM.
INFO 2026-06-03 20:11:18 MarkDuplicates Read 187,000,000 records. Elapsed time: 00:11:22s. Time for last 1,000,000: 2s. Last read position: chr6:44,154,089
INFO 2026-06-03 20:11:18 MarkDuplicates Tracking 564142 as yet unmatched pairs. 18357 records in RAM.
INFO 2026-06-03 20:11:20 MarkDuplicates Read 188,000,000 records. Elapsed time: 00:11:24s. Time for last 1,000,000: 2s. Last read position: chr6:52,995,754
INFO 2026-06-03 20:11:20 MarkDuplicates Tracking 563966 as yet unmatched pairs. 18159 records in RAM.
INFO 2026-06-03 20:11:22 MarkDuplicates Read 189,000,000 records. Elapsed time: 00:11:26s. Time for last 1,000,000: 2s. Last read position: chr6:57,190,567
INFO 2026-06-03 20:11:22 MarkDuplicates Tracking 561600 as yet unmatched pairs. 15786 records in RAM.
INFO 2026-06-03 20:11:25 MarkDuplicates Read 190,000,000 records. Elapsed time: 00:11:29s. Time for last 1,000,000: 2s. Last read position: chr6:78,998,287
INFO 2026-06-03 20:11:25 MarkDuplicates Tracking 560439 as yet unmatched pairs. 14614 records in RAM.
INFO 2026-06-03 20:11:27 MarkDuplicates Read 191,000,000 records. Elapsed time: 00:11:31s. Time for last 1,000,000: 2s. Last read position: chr6:89,713,271
INFO 2026-06-03 20:11:27 MarkDuplicates Tracking 559208 as yet unmatched pairs. 13372 records in RAM.
INFO 2026-06-03 20:11:30 MarkDuplicates Read 192,000,000 records. Elapsed time: 00:11:33s. Time for last 1,000,000: 2s. Last read position: chr6:110,960,587
INFO 2026-06-03 20:11:30 MarkDuplicates Tracking 557912 as yet unmatched pairs. 12069 records in RAM.
INFO 2026-06-03 20:11:32 MarkDuplicates Read 193,000,000 records. Elapsed time: 00:11:36s. Time for last 1,000,000: 2s. Last read position: chr6:129,638,598
INFO 2026-06-03 20:11:32 MarkDuplicates Tracking 556531 as yet unmatched pairs. 10673 records in RAM.
INFO 2026-06-03 20:11:34 MarkDuplicates Read 194,000,000 records. Elapsed time: 00:11:38s. Time for last 1,000,000: 2s. Last read position: chr6:136,278,082
INFO 2026-06-03 20:11:34 MarkDuplicates Tracking 555552 as yet unmatched pairs. 9683 records in RAM.
INFO 2026-06-03 20:11:37 MarkDuplicates Read 195,000,000 records. Elapsed time: 00:11:40s. Time for last 1,000,000: 2s. Last read position: chr6:138,943,895
INFO 2026-06-03 20:11:37 MarkDuplicates Tracking 553867 as yet unmatched pairs. 7990 records in RAM.
INFO 2026-06-03 20:11:39 MarkDuplicates Read 196,000,000 records. Elapsed time: 00:11:43s. Time for last 1,000,000: 2s. Last read position: chr6:148,519,659
INFO 2026-06-03 20:11:39 MarkDuplicates Tracking 552509 as yet unmatched pairs. 6607 records in RAM.
INFO 2026-06-03 20:11:41 MarkDuplicates Read 197,000,000 records. Elapsed time: 00:11:45s. Time for last 1,000,000: 2s. Last read position: chr6:156,779,298
INFO 2026-06-03 20:11:41 MarkDuplicates Tracking 551528 as yet unmatched pairs. 5616 records in RAM.
INFO 2026-06-03 20:11:44 MarkDuplicates Read 198,000,000 records. Elapsed time: 00:11:47s. Time for last 1,000,000: 2s. Last read position: chr6:158,770,864
INFO 2026-06-03 20:11:44 MarkDuplicates Tracking 549906 as yet unmatched pairs. 3988 records in RAM.
INFO 2026-06-03 20:11:46 MarkDuplicates Read 199,000,000 records. Elapsed time: 00:11:50s. Time for last 1,000,000: 2s. Last read position: chr6:160,061,876
INFO 2026-06-03 20:11:46 MarkDuplicates Tracking 548518 as yet unmatched pairs. 2594 records in RAM.
INFO 2026-06-03 20:11:48 MarkDuplicates Read 200,000,000 records. Elapsed time: 00:11:52s. Time for last 1,000,000: 2s. Last read position: chr6:169,225,225
INFO 2026-06-03 20:11:48 MarkDuplicates Tracking 546984 as yet unmatched pairs. 1039 records in RAM.
INFO 2026-06-03 20:11:51 MarkDuplicates Read 201,000,000 records. Elapsed time: 00:11:55s. Time for last 1,000,000: 2s. Last read position: chr7:1,495,472
INFO 2026-06-03 20:11:51 MarkDuplicates Tracking 545086 as yet unmatched pairs. 37592 records in RAM.
INFO 2026-06-03 20:11:54 MarkDuplicates Read 202,000,000 records. Elapsed time: 00:11:58s. Time for last 1,000,000: 2s. Last read position: chr7:5,527,185
INFO 2026-06-03 20:11:54 MarkDuplicates Tracking 543182 as yet unmatched pairs. 35682 records in RAM.
INFO 2026-06-03 20:11:56 MarkDuplicates Read 203,000,000 records. Elapsed time: 00:12:00s. Time for last 1,000,000: 2s. Last read position: chr7:6,751,296
INFO 2026-06-03 20:11:56 MarkDuplicates Tracking 541733 as yet unmatched pairs. 34224 records in RAM.
INFO 2026-06-03 20:11:59 MarkDuplicates Read 204,000,000 records. Elapsed time: 00:12:03s. Time for last 1,000,000: 2s. Last read position: chr7:23,786,440
INFO 2026-06-03 20:11:59 MarkDuplicates Tracking 540515 as yet unmatched pairs. 32996 records in RAM.
INFO 2026-06-03 20:12:01 MarkDuplicates Read 205,000,000 records. Elapsed time: 00:12:05s. Time for last 1,000,000: 2s. Last read position: chr7:36,155,167
INFO 2026-06-03 20:12:01 MarkDuplicates Tracking 539257 as yet unmatched pairs. 31714 records in RAM.
INFO 2026-06-03 20:12:03 MarkDuplicates Read 206,000,000 records. Elapsed time: 00:12:07s. Time for last 1,000,000: 2s. Last read position: chr7:44,121,876
INFO 2026-06-03 20:12:03 MarkDuplicates Tracking 538012 as yet unmatched pairs. 30458 records in RAM.
INFO 2026-06-03 20:12:06 MarkDuplicates Read 207,000,000 records. Elapsed time: 00:12:10s. Time for last 1,000,000: 2s. Last read position: chr7:47,415,131
INFO 2026-06-03 20:12:06 MarkDuplicates Tracking 536520 as yet unmatched pairs. 28962 records in RAM.
INFO 2026-06-03 20:12:08 MarkDuplicates Read 208,000,000 records. Elapsed time: 00:12:12s. Time for last 1,000,000: 2s. Last read position: chr7:64,978,340
INFO 2026-06-03 20:12:08 MarkDuplicates Tracking 534821 as yet unmatched pairs. 27261 records in RAM.
INFO 2026-06-03 20:12:10 MarkDuplicates Read 209,000,000 records. Elapsed time: 00:12:14s. Time for last 1,000,000: 2s. Last read position: chr7:73,065,546
INFO 2026-06-03 20:12:10 MarkDuplicates Tracking 533891 as yet unmatched pairs. 26324 records in RAM.
INFO 2026-06-03 20:12:13 MarkDuplicates Read 210,000,000 records. Elapsed time: 00:12:17s. Time for last 1,000,000: 2s. Last read position: chr7:73,831,177
INFO 2026-06-03 20:12:13 MarkDuplicates Tracking 533312 as yet unmatched pairs. 25732 records in RAM.
INFO 2026-06-03 20:12:15 MarkDuplicates Read 211,000,000 records. Elapsed time: 00:12:19s. Time for last 1,000,000: 2s. Last read position: chr7:75,149,102
INFO 2026-06-03 20:12:15 MarkDuplicates Tracking 531780 as yet unmatched pairs. 24195 records in RAM.
INFO 2026-06-03 20:12:18 MarkDuplicates Read 212,000,000 records. Elapsed time: 00:12:21s. Time for last 1,000,000: 2s. Last read position: chr7:76,048,188
INFO 2026-06-03 20:12:18 MarkDuplicates Tracking 531980 as yet unmatched pairs. 24393 records in RAM.
INFO 2026-06-03 20:12:21 MarkDuplicates Read 213,000,000 records. Elapsed time: 00:12:24s. Time for last 1,000,000: 2s. Last read position: chr7:87,188,283
INFO 2026-06-03 20:12:21 MarkDuplicates Tracking 529904 as yet unmatched pairs. 22307 records in RAM.
INFO 2026-06-03 20:12:23 MarkDuplicates Read 214,000,000 records. Elapsed time: 00:12:27s. Time for last 1,000,000: 2s. Last read position: chr7:92,235,959
INFO 2026-06-03 20:12:23 MarkDuplicates Tracking 528606 as yet unmatched pairs. 20994 records in RAM.
INFO 2026-06-03 20:12:26 MarkDuplicates Read 215,000,000 records. Elapsed time: 00:12:30s. Time for last 1,000,000: 2s. Last read position: chr7:95,434,889
INFO 2026-06-03 20:12:26 MarkDuplicates Tracking 527068 as yet unmatched pairs. 19448 records in RAM.
INFO 2026-06-03 20:12:28 MarkDuplicates Read 216,000,000 records. Elapsed time: 00:12:32s. Time for last 1,000,000: 2s. Last read position: chr7:99,049,670
INFO 2026-06-03 20:12:28 MarkDuplicates Tracking 525744 as yet unmatched pairs. 18104 records in RAM.
INFO 2026-06-03 20:12:31 MarkDuplicates Read 217,000,000 records. Elapsed time: 00:12:35s. Time for last 1,000,000: 2s. Last read position: chr7:100,024,241
INFO 2026-06-03 20:12:31 MarkDuplicates Tracking 524920 as yet unmatched pairs. 17270 records in RAM.
INFO 2026-06-03 20:12:33 MarkDuplicates Read 218,000,000 records. Elapsed time: 00:12:37s. Time for last 1,000,000: 2s. Last read position: chr7:100,555,658
INFO 2026-06-03 20:12:33 MarkDuplicates Tracking 522886 as yet unmatched pairs. 15232 records in RAM.
INFO 2026-06-03 20:12:36 MarkDuplicates Read 219,000,000 records. Elapsed time: 00:12:40s. Time for last 1,000,000: 2s. Last read position: chr7:100,960,611
INFO 2026-06-03 20:12:36 MarkDuplicates Tracking 521269 as yet unmatched pairs. 13607 records in RAM.
INFO 2026-06-03 20:12:38 MarkDuplicates Read 220,000,000 records. Elapsed time: 00:12:41s. Time for last 1,000,000: 1s. Last read position: chr7:100,998,805
INFO 2026-06-03 20:12:38 MarkDuplicates Tracking 520968 as yet unmatched pairs. 13304 records in RAM.
INFO 2026-06-03 20:12:40 MarkDuplicates Read 221,000,000 records. Elapsed time: 00:12:43s. Time for last 1,000,000: 1s. Last read position: chr7:101,034,289
INFO 2026-06-03 20:12:40 MarkDuplicates Tracking 520895 as yet unmatched pairs. 13231 records in RAM.
INFO 2026-06-03 20:12:42 MarkDuplicates Read 222,000,000 records. Elapsed time: 00:12:46s. Time for last 1,000,000: 2s. Last read position: chr7:101,089,381
INFO 2026-06-03 20:12:42 MarkDuplicates Tracking 518989 as yet unmatched pairs. 11320 records in RAM.
INFO 2026-06-03 20:12:45 MarkDuplicates Read 223,000,000 records. Elapsed time: 00:12:48s. Time for last 1,000,000: 2s. Last read position: chr7:102,555,967
INFO 2026-06-03 20:12:45 MarkDuplicates Tracking 518071 as yet unmatched pairs. 10398 records in RAM.
INFO 2026-06-03 20:12:47 MarkDuplicates Read 224,000,000 records. Elapsed time: 00:12:50s. Time for last 1,000,000: 2s. Last read position: chr7:105,112,806
INFO 2026-06-03 20:12:47 MarkDuplicates Tracking 517100 as yet unmatched pairs. 9421 records in RAM.
INFO 2026-06-03 20:12:49 MarkDuplicates Read 225,000,000 records. Elapsed time: 00:12:53s. Time for last 1,000,000: 2s. Last read position: chr7:112,450,567
INFO 2026-06-03 20:12:49 MarkDuplicates Tracking 516231 as yet unmatched pairs. 8539 records in RAM.
INFO 2026-06-03 20:12:52 MarkDuplicates Read 226,000,000 records. Elapsed time: 00:12:56s. Time for last 1,000,000: 2s. Last read position: chr7:127,887,932
INFO 2026-06-03 20:12:52 MarkDuplicates Tracking 515474 as yet unmatched pairs. 7774 records in RAM.
INFO 2026-06-03 20:12:54 MarkDuplicates Read 227,000,000 records. Elapsed time: 00:12:58s. Time for last 1,000,000: 2s. Last read position: chr7:135,165,492
INFO 2026-06-03 20:12:54 MarkDuplicates Tracking 513489 as yet unmatched pairs. 5767 records in RAM.
INFO 2026-06-03 20:12:57 MarkDuplicates Read 228,000,000 records. Elapsed time: 00:13:01s. Time for last 1,000,000: 2s. Last read position: chr7:141,652,834
INFO 2026-06-03 20:12:57 MarkDuplicates Tracking 512273 as yet unmatched pairs. 4544 records in RAM.
INFO 2026-06-03 20:12:59 MarkDuplicates Read 229,000,000 records. Elapsed time: 00:13:03s. Time for last 1,000,000: 1s. Last read position: chr7:144,364,308
INFO 2026-06-03 20:12:59 MarkDuplicates Tracking 511018 as yet unmatched pairs. 3288 records in RAM.
INFO 2026-06-03 20:13:01 MarkDuplicates Read 230,000,000 records. Elapsed time: 00:13:05s. Time for last 1,000,000: 2s. Last read position: chr7:151,081,808
INFO 2026-06-03 20:13:01 MarkDuplicates Tracking 509492 as yet unmatched pairs. 1750 records in RAM.
INFO 2026-06-03 20:13:05 MarkDuplicates Read 231,000,000 records. Elapsed time: 00:13:09s. Time for last 1,000,000: 3s. Last read position: chr7:158,739,040
INFO 2026-06-03 20:13:05 MarkDuplicates Tracking 508014 as yet unmatched pairs. 249 records in RAM.
INFO 2026-06-03 20:13:08 MarkDuplicates Read 232,000,000 records. Elapsed time: 00:13:12s. Time for last 1,000,000: 3s. Last read position: chr8:17,721,681
INFO 2026-06-03 20:13:08 MarkDuplicates Tracking 506517 as yet unmatched pairs. 38635 records in RAM.
INFO 2026-06-03 20:13:10 MarkDuplicates Read 233,000,000 records. Elapsed time: 00:13:14s. Time for last 1,000,000: 2s. Last read position: chr8:22,283,152
INFO 2026-06-03 20:13:10 MarkDuplicates Tracking 504967 as yet unmatched pairs. 37077 records in RAM.
INFO 2026-06-03 20:13:14 MarkDuplicates Read 234,000,000 records. Elapsed time: 00:13:18s. Time for last 1,000,000: 3s. Last read position: chr8:23,568,248
INFO 2026-06-03 20:13:14 MarkDuplicates Tracking 503439 as yet unmatched pairs. 35547 records in RAM.
INFO 2026-06-03 20:13:17 MarkDuplicates Read 235,000,000 records. Elapsed time: 00:13:21s. Time for last 1,000,000: 2s. Last read position: chr8:37,697,398
INFO 2026-06-03 20:13:17 MarkDuplicates Tracking 502177 as yet unmatched pairs. 34282 records in RAM.
INFO 2026-06-03 20:13:20 MarkDuplicates Read 236,000,000 records. Elapsed time: 00:13:24s. Time for last 1,000,000: 3s. Last read position: chr8:38,338,558
INFO 2026-06-03 20:13:20 MarkDuplicates Tracking 500854 as yet unmatched pairs. 32958 records in RAM.
INFO 2026-06-03 20:13:23 MarkDuplicates Read 237,000,000 records. Elapsed time: 00:13:27s. Time for last 1,000,000: 2s. Last read position: chr8:38,836,113
INFO 2026-06-03 20:13:23 MarkDuplicates Tracking 501470 as yet unmatched pairs. 33570 records in RAM.
INFO 2026-06-03 20:13:26 MarkDuplicates Read 238,000,000 records. Elapsed time: 00:13:30s. Time for last 1,000,000: 2s. Last read position: chr8:42,870,078
INFO 2026-06-03 20:13:26 MarkDuplicates Tracking 497983 as yet unmatched pairs. 30079 records in RAM.
INFO 2026-06-03 20:13:28 MarkDuplicates Read 239,000,000 records. Elapsed time: 00:13:32s. Time for last 1,000,000: 2s. Last read position: chr8:53,999,951
INFO 2026-06-03 20:13:28 MarkDuplicates Tracking 496861 as yet unmatched pairs. 28946 records in RAM.
INFO 2026-06-03 20:13:31 MarkDuplicates Read 240,000,000 records. Elapsed time: 00:13:35s. Time for last 1,000,000: 2s. Last read position: chr8:61,681,004
INFO 2026-06-03 20:13:31 MarkDuplicates Tracking 496452 as yet unmatched pairs. 28519 records in RAM.
INFO 2026-06-03 20:13:34 MarkDuplicates Read 241,000,000 records. Elapsed time: 00:13:37s. Time for last 1,000,000: 2s. Last read position: chr8:73,291,875
INFO 2026-06-03 20:13:34 MarkDuplicates Tracking 495096 as yet unmatched pairs. 27159 records in RAM.
INFO 2026-06-03 20:13:36 MarkDuplicates Read 242,000,000 records. Elapsed time: 00:13:40s. Time for last 1,000,000: 2s. Last read position: chr8:91,960,199
INFO 2026-06-03 20:13:36 MarkDuplicates Tracking 492998 as yet unmatched pairs. 25050 records in RAM.
INFO 2026-06-03 20:13:39 MarkDuplicates Read 243,000,000 records. Elapsed time: 00:13:43s. Time for last 1,000,000: 2s. Last read position: chr8:98,041,771
INFO 2026-06-03 20:13:39 MarkDuplicates Tracking 493245 as yet unmatched pairs. 25295 records in RAM.
INFO 2026-06-03 20:13:42 MarkDuplicates Read 244,000,000 records. Elapsed time: 00:13:46s. Time for last 1,000,000: 3s. Last read position: chr8:100,717,868
INFO 2026-06-03 20:13:42 MarkDuplicates Tracking 494085 as yet unmatched pairs. 26127 records in RAM.
INFO 2026-06-03 20:13:45 MarkDuplicates Read 245,000,000 records. Elapsed time: 00:13:49s. Time for last 1,000,000: 2s. Last read position: chr8:108,214,633
INFO 2026-06-03 20:13:45 MarkDuplicates Tracking 490449 as yet unmatched pairs. 22487 records in RAM.
INFO 2026-06-03 20:13:48 MarkDuplicates Read 246,000,000 records. Elapsed time: 00:13:52s. Time for last 1,000,000: 2s. Last read position: chr8:122,953,424
INFO 2026-06-03 20:13:48 MarkDuplicates Tracking 487684 as yet unmatched pairs. 19704 records in RAM.
INFO 2026-06-03 20:13:50 MarkDuplicates Read 247,000,000 records. Elapsed time: 00:13:54s. Time for last 1,000,000: 2s. Last read position: chr8:127,738,860
INFO 2026-06-03 20:13:50 MarkDuplicates Tracking 486745 as yet unmatched pairs. 18761 records in RAM.
INFO 2026-06-03 20:13:53 MarkDuplicates Read 248,000,000 records. Elapsed time: 00:13:57s. Time for last 1,000,000: 2s. Last read position: chr8:141,218,570
INFO 2026-06-03 20:13:53 MarkDuplicates Tracking 484958 as yet unmatched pairs. 16961 records in RAM.
INFO 2026-06-03 20:13:56 MarkDuplicates Read 249,000,000 records. Elapsed time: 00:14:00s. Time for last 1,000,000: 2s. Last read position: chr8:143,614,427
INFO 2026-06-03 20:13:56 MarkDuplicates Tracking 483548 as yet unmatched pairs. 15548 records in RAM.
INFO 2026-06-03 20:13:58 MarkDuplicates Read 250,000,000 records. Elapsed time: 00:14:02s. Time for last 1,000,000: 2s. Last read position: chr8:143,858,228
INFO 2026-06-03 20:13:58 MarkDuplicates Tracking 481609 as yet unmatched pairs. 13601 records in RAM.
INFO 2026-06-03 20:14:00 MarkDuplicates Read 251,000,000 records. Elapsed time: 00:14:04s. Time for last 1,000,000: 1s. Last read position: chr8:143,859,075
INFO 2026-06-03 20:14:00 MarkDuplicates Tracking 481928 as yet unmatched pairs. 13918 records in RAM.
INFO 2026-06-03 20:14:01 MarkDuplicates Read 252,000,000 records. Elapsed time: 00:14:05s. Time for last 1,000,000: 1s. Last read position: chr8:143,860,311
INFO 2026-06-03 20:14:01 MarkDuplicates Tracking 481750 as yet unmatched pairs. 13740 records in RAM.
INFO 2026-06-03 20:14:03 MarkDuplicates Read 253,000,000 records. Elapsed time: 00:14:07s. Time for last 1,000,000: 1s. Last read position: chr8:143,861,230
INFO 2026-06-03 20:14:03 MarkDuplicates Tracking 480521 as yet unmatched pairs. 12511 records in RAM.
INFO 2026-06-03 20:14:05 MarkDuplicates Read 254,000,000 records. Elapsed time: 00:14:08s. Time for last 1,000,000: 1s. Last read position: chr8:143,861,964
INFO 2026-06-03 20:14:05 MarkDuplicates Tracking 480267 as yet unmatched pairs. 12257 records in RAM.
INFO 2026-06-03 20:15:22 MarkDuplicates Read 255,000,000 records. Elapsed time: 00:15:26s. Time for last 1,000,000: 77s. Last read position: chr8:143,862,887
INFO 2026-06-03 20:15:22 MarkDuplicates Tracking 480494 as yet unmatched pairs. 12483 records in RAM.
INFO 2026-06-03 20:15:25 MarkDuplicates Read 256,000,000 records. Elapsed time: 00:15:29s. Time for last 1,000,000: 3s. Last read position: chr8:143,863,644
INFO 2026-06-03 20:15:25 MarkDuplicates Tracking 479633 as yet unmatched pairs. 11622 records in RAM.
INFO 2026-06-03 20:15:27 MarkDuplicates Read 257,000,000 records. Elapsed time: 00:15:31s. Time for last 1,000,000: 2s. Last read position: chr8:143,864,639
INFO 2026-06-03 20:15:27 MarkDuplicates Tracking 478803 as yet unmatched pairs. 10792 records in RAM.
INFO 2026-06-03 20:15:28 MarkDuplicates Read 258,000,000 records. Elapsed time: 00:15:32s. Time for last 1,000,000: 1s. Last read position: chr8:143,865,455
INFO 2026-06-03 20:15:28 MarkDuplicates Tracking 476595 as yet unmatched pairs. 8584 records in RAM.
INFO 2026-06-03 20:15:30 MarkDuplicates Read 259,000,000 records. Elapsed time: 00:15:34s. Time for last 1,000,000: 1s. Last read position: chr8:143,866,305
INFO 2026-06-03 20:15:30 MarkDuplicates Tracking 476579 as yet unmatched pairs. 8568 records in RAM.
INFO 2026-06-03 20:15:32 MarkDuplicates Read 260,000,000 records. Elapsed time: 00:15:36s. Time for last 1,000,000: 2s. Last read position: chr8:143,916,635
INFO 2026-06-03 20:15:32 MarkDuplicates Tracking 475834 as yet unmatched pairs. 7823 records in RAM.
INFO 2026-06-03 20:15:34 MarkDuplicates Read 261,000,000 records. Elapsed time: 00:15:38s. Time for last 1,000,000: 2s. Last read position: chr8:143,927,725
INFO 2026-06-03 20:15:34 MarkDuplicates Tracking 473611 as yet unmatched pairs. 5596 records in RAM.
INFO 2026-06-03 20:15:37 MarkDuplicates Read 262,000,000 records. Elapsed time: 00:15:41s. Time for last 1,000,000: 2s. Last read position: chr8:144,180,452
INFO 2026-06-03 20:15:37 MarkDuplicates Tracking 471521 as yet unmatched pairs. 3506 records in RAM.
INFO 2026-06-03 20:15:39 MarkDuplicates Read 263,000,000 records. Elapsed time: 00:15:43s. Time for last 1,000,000: 2s. Last read position: chr8:144,433,632
INFO 2026-06-03 20:15:39 MarkDuplicates Tracking 469541 as yet unmatched pairs. 1519 records in RAM.
INFO 2026-06-03 20:15:42 MarkDuplicates Read 264,000,000 records. Elapsed time: 00:15:46s. Time for last 1,000,000: 2s. Last read position: chr9:368,053
INFO 2026-06-03 20:15:42 MarkDuplicates Tracking 467921 as yet unmatched pairs. 51522 records in RAM.
INFO 2026-06-03 20:15:44 MarkDuplicates Read 265,000,000 records. Elapsed time: 00:15:48s. Time for last 1,000,000: 2s. Last read position: chr9:7,798,515
INFO 2026-06-03 20:15:44 MarkDuplicates Tracking 466874 as yet unmatched pairs. 50463 records in RAM.
INFO 2026-06-03 20:15:47 MarkDuplicates Read 266,000,000 records. Elapsed time: 00:15:50s. Time for last 1,000,000: 2s. Last read position: chr9:19,316,473
INFO 2026-06-03 20:15:47 MarkDuplicates Tracking 465446 as yet unmatched pairs. 49030 records in RAM.
INFO 2026-06-03 20:15:49 MarkDuplicates Read 267,000,000 records. Elapsed time: 00:15:53s. Time for last 1,000,000: 2s. Last read position: chr9:32,544,183
INFO 2026-06-03 20:15:49 MarkDuplicates Tracking 463892 as yet unmatched pairs. 47460 records in RAM.
INFO 2026-06-03 20:15:51 MarkDuplicates Read 268,000,000 records. Elapsed time: 00:15:55s. Time for last 1,000,000: 2s. Last read position: chr9:33,926,879
INFO 2026-06-03 20:15:51 MarkDuplicates Tracking 462556 as yet unmatched pairs. 46116 records in RAM.
INFO 2026-06-03 20:15:54 MarkDuplicates Read 269,000,000 records. Elapsed time: 00:15:58s. Time for last 1,000,000: 2s. Last read position: chr9:35,607,581
INFO 2026-06-03 20:15:54 MarkDuplicates Tracking 461089 as yet unmatched pairs. 44649 records in RAM.
INFO 2026-06-03 20:15:56 MarkDuplicates Read 270,000,000 records. Elapsed time: 00:16:00s. Time for last 1,000,000: 2s. Last read position: chr9:36,581,713
INFO 2026-06-03 20:15:56 MarkDuplicates Tracking 459437 as yet unmatched pairs. 42965 records in RAM.
INFO 2026-06-03 20:15:58 MarkDuplicates Read 271,000,000 records. Elapsed time: 00:16:02s. Time for last 1,000,000: 2s. Last read position: chr9:68,303,670
INFO 2026-06-03 20:15:58 MarkDuplicates Tracking 458488 as yet unmatched pairs. 42010 records in RAM.
INFO 2026-06-03 20:16:01 MarkDuplicates Read 272,000,000 records. Elapsed time: 00:16:04s. Time for last 1,000,000: 2s. Last read position: chr9:75,088,678
INFO 2026-06-03 20:16:01 MarkDuplicates Tracking 457242 as yet unmatched pairs. 40761 records in RAM.
INFO 2026-06-03 20:16:03 MarkDuplicates Read 273,000,000 records. Elapsed time: 00:16:07s. Time for last 1,000,000: 2s. Last read position: chr9:83,969,257
INFO 2026-06-03 20:16:03 MarkDuplicates Tracking 456624 as yet unmatched pairs. 40139 records in RAM.
INFO 2026-06-03 20:16:05 MarkDuplicates Read 274,000,000 records. Elapsed time: 00:16:09s. Time for last 1,000,000: 2s. Last read position: chr9:89,350,667
INFO 2026-06-03 20:16:05 MarkDuplicates Tracking 454486 as yet unmatched pairs. 37999 records in RAM.
INFO 2026-06-03 20:16:08 MarkDuplicates Read 275,000,000 records. Elapsed time: 00:16:12s. Time for last 1,000,000: 2s. Last read position: chr9:93,229,711
INFO 2026-06-03 20:16:08 MarkDuplicates Tracking 453265 as yet unmatched pairs. 36774 records in RAM.
INFO 2026-06-03 20:16:10 MarkDuplicates Read 276,000,000 records. Elapsed time: 00:16:14s. Time for last 1,000,000: 2s. Last read position: chr9:93,297,865
INFO 2026-06-03 20:16:10 MarkDuplicates Tracking 451462 as yet unmatched pairs. 34961 records in RAM.
INFO 2026-06-03 20:16:12 MarkDuplicates Read 277,000,000 records. Elapsed time: 00:16:16s. Time for last 1,000,000: 2s. Last read position: chr9:95,062,331
INFO 2026-06-03 20:16:12 MarkDuplicates Tracking 449884 as yet unmatched pairs. 33378 records in RAM.
INFO 2026-06-03 20:16:15 MarkDuplicates Read 278,000,000 records. Elapsed time: 00:16:19s. Time for last 1,000,000: 2s. Last read position: chr9:98,796,126
INFO 2026-06-03 20:16:15 MarkDuplicates Tracking 448431 as yet unmatched pairs. 31915 records in RAM.
INFO 2026-06-03 20:16:17 MarkDuplicates Read 279,000,000 records. Elapsed time: 00:16:21s. Time for last 1,000,000: 2s. Last read position: chr9:105,522,706
INFO 2026-06-03 20:16:17 MarkDuplicates Tracking 447046 as yet unmatched pairs. 30522 records in RAM.
INFO 2026-06-03 20:16:20 MarkDuplicates Read 280,000,000 records. Elapsed time: 00:16:24s. Time for last 1,000,000: 2s. Last read position: chr9:110,244,178
INFO 2026-06-03 20:16:20 MarkDuplicates Tracking 453073 as yet unmatched pairs. 36540 records in RAM.
INFO 2026-06-03 20:16:23 MarkDuplicates Read 281,000,000 records. Elapsed time: 00:16:27s. Time for last 1,000,000: 2s. Last read position: chr9:113,184,751
INFO 2026-06-03 20:16:23 MarkDuplicates Tracking 444300 as yet unmatched pairs. 27758 records in RAM.
INFO 2026-06-03 20:16:25 MarkDuplicates Read 282,000,000 records. Elapsed time: 00:16:29s. Time for last 1,000,000: 2s. Last read position: chr9:114,592,552
INFO 2026-06-03 20:16:25 MarkDuplicates Tracking 443513 as yet unmatched pairs. 26964 records in RAM.
INFO 2026-06-03 20:16:28 MarkDuplicates Read 283,000,000 records. Elapsed time: 00:16:31s. Time for last 1,000,000: 2s. Last read position: chr9:121,327,455
INFO 2026-06-03 20:16:28 MarkDuplicates Tracking 441410 as yet unmatched pairs. 24856 records in RAM.
INFO 2026-06-03 20:16:30 MarkDuplicates Read 284,000,000 records. Elapsed time: 00:16:34s. Time for last 1,000,000: 2s. Last read position: chr9:124,857,953
INFO 2026-06-03 20:16:30 MarkDuplicates Tracking 441000 as yet unmatched pairs. 24441 records in RAM.
INFO 2026-06-03 20:16:32 MarkDuplicates Read 285,000,000 records. Elapsed time: 00:16:36s. Time for last 1,000,000: 2s. Last read position: chr9:127,450,742
INFO 2026-06-03 20:16:32 MarkDuplicates Tracking 439609 as yet unmatched pairs. 23045 records in RAM.
INFO 2026-06-03 20:16:34 MarkDuplicates Read 286,000,000 records. Elapsed time: 00:16:38s. Time for last 1,000,000: 2s. Last read position: chr9:128,121,113
INFO 2026-06-03 20:16:34 MarkDuplicates Tracking 437034 as yet unmatched pairs. 20465 records in RAM.
INFO 2026-06-03 20:16:37 MarkDuplicates Read 287,000,000 records. Elapsed time: 00:16:41s. Time for last 1,000,000: 2s. Last read position: chr9:128,345,432
INFO 2026-06-03 20:16:37 MarkDuplicates Tracking 435286 as yet unmatched pairs. 18714 records in RAM.
INFO 2026-06-03 20:16:39 MarkDuplicates Read 288,000,000 records. Elapsed time: 00:16:43s. Time for last 1,000,000: 2s. Last read position: chr9:128,721,313
INFO 2026-06-03 20:16:39 MarkDuplicates Tracking 434318 as yet unmatched pairs. 17738 records in RAM.
INFO 2026-06-03 20:16:41 MarkDuplicates Read 289,000,000 records. Elapsed time: 00:16:45s. Time for last 1,000,000: 2s. Last read position: chr9:129,829,528
INFO 2026-06-03 20:16:41 MarkDuplicates Tracking 432440 as yet unmatched pairs. 15854 records in RAM.
INFO 2026-06-03 20:16:44 MarkDuplicates Read 290,000,000 records. Elapsed time: 00:16:48s. Time for last 1,000,000: 2s. Last read position: chr9:131,150,645
INFO 2026-06-03 20:16:44 MarkDuplicates Tracking 430756 as yet unmatched pairs. 14163 records in RAM.
INFO 2026-06-03 20:16:46 MarkDuplicates Read 291,000,000 records. Elapsed time: 00:16:50s. Time for last 1,000,000: 2s. Last read position: chr9:132,264,583
INFO 2026-06-03 20:16:46 MarkDuplicates Tracking 429483 as yet unmatched pairs. 12888 records in RAM.
INFO 2026-06-03 20:16:48 MarkDuplicates Read 292,000,000 records. Elapsed time: 00:16:52s. Time for last 1,000,000: 2s. Last read position: chr9:133,349,654
INFO 2026-06-03 20:16:48 MarkDuplicates Tracking 429420 as yet unmatched pairs. 12814 records in RAM.
INFO 2026-06-03 20:16:50 MarkDuplicates Read 293,000,000 records. Elapsed time: 00:16:54s. Time for last 1,000,000: 2s. Last read position: chr9:134,139,880
INFO 2026-06-03 20:16:50 MarkDuplicates Tracking 426699 as yet unmatched pairs. 10084 records in RAM.
INFO 2026-06-03 20:16:53 MarkDuplicates Read 294,000,000 records. Elapsed time: 00:16:57s. Time for last 1,000,000: 2s. Last read position: chr9:136,378,925
INFO 2026-06-03 20:16:53 MarkDuplicates Tracking 424937 as yet unmatched pairs. 8313 records in RAM.
INFO 2026-06-03 20:16:55 MarkDuplicates Read 295,000,000 records. Elapsed time: 00:16:59s. Time for last 1,000,000: 2s. Last read position: chr9:136,509,886
INFO 2026-06-03 20:16:55 MarkDuplicates Tracking 423413 as yet unmatched pairs. 6784 records in RAM.
INFO 2026-06-03 20:16:57 MarkDuplicates Read 296,000,000 records. Elapsed time: 00:17:01s. Time for last 1,000,000: 2s. Last read position: chr9:136,942,621
INFO 2026-06-03 20:16:57 MarkDuplicates Tracking 421709 as yet unmatched pairs. 5075 records in RAM.
INFO 2026-06-03 20:17:00 MarkDuplicates Read 297,000,000 records. Elapsed time: 00:17:04s. Time for last 1,000,000: 3s. Last read position: chr9:137,188,764
INFO 2026-06-03 20:17:00 MarkDuplicates Tracking 419770 as yet unmatched pairs. 3132 records in RAM.
INFO 2026-06-03 20:17:03 MarkDuplicates Read 298,000,000 records. Elapsed time: 00:17:07s. Time for last 1,000,000: 2s. Last read position: chr9:137,452,378
INFO 2026-06-03 20:17:03 MarkDuplicates Tracking 418707 as yet unmatched pairs. 2068 records in RAM.
INFO 2026-06-03 20:17:05 MarkDuplicates Read 299,000,000 records. Elapsed time: 00:17:09s. Time for last 1,000,000: 2s. Last read position: chr10:3,160,257
INFO 2026-06-03 20:17:05 MarkDuplicates Tracking 416314 as yet unmatched pairs. 19452 records in RAM.
INFO 2026-06-03 20:17:08 MarkDuplicates Read 300,000,000 records. Elapsed time: 00:17:12s. Time for last 1,000,000: 2s. Last read position: chr10:16,754,967
INFO 2026-06-03 20:17:08 MarkDuplicates Tracking 414929 as yet unmatched pairs. 18054 records in RAM.
INFO 2026-06-03 20:17:10 MarkDuplicates Read 301,000,000 records. Elapsed time: 00:17:14s. Time for last 1,000,000: 2s. Last read position: chr10:29,481,614
INFO 2026-06-03 20:17:10 MarkDuplicates Tracking 413763 as yet unmatched pairs. 16878 records in RAM.
INFO 2026-06-03 20:17:12 MarkDuplicates Read 302,000,000 records. Elapsed time: 00:17:16s. Time for last 1,000,000: 2s. Last read position: chr10:32,920,359
INFO 2026-06-03 20:17:12 MarkDuplicates Tracking 413105 as yet unmatched pairs. 16217 records in RAM.
INFO 2026-06-03 20:17:14 MarkDuplicates Read 303,000,000 records. Elapsed time: 00:17:18s. Time for last 1,000,000: 2s. Last read position: chr10:46,014,537
INFO 2026-06-03 20:17:14 MarkDuplicates Tracking 411863 as yet unmatched pairs. 14965 records in RAM.
INFO 2026-06-03 20:17:17 MarkDuplicates Read 304,000,000 records. Elapsed time: 00:17:20s. Time for last 1,000,000: 2s. Last read position: chr10:63,207,039
INFO 2026-06-03 20:17:17 MarkDuplicates Tracking 410351 as yet unmatched pairs. 13441 records in RAM.
INFO 2026-06-03 20:17:19 MarkDuplicates Read 305,000,000 records. Elapsed time: 00:17:23s. Time for last 1,000,000: 2s. Last read position: chr10:72,274,243
INFO 2026-06-03 20:17:19 MarkDuplicates Tracking 408916 as yet unmatched pairs. 11999 records in RAM.
INFO 2026-06-03 20:17:21 MarkDuplicates Read 306,000,000 records. Elapsed time: 00:17:25s. Time for last 1,000,000: 2s. Last read position: chr10:78,035,675
INFO 2026-06-03 20:17:21 MarkDuplicates Tracking 412422 as yet unmatched pairs. 15498 records in RAM.
INFO 2026-06-03 20:17:23 MarkDuplicates Read 307,000,000 records. Elapsed time: 00:17:27s. Time for last 1,000,000: 2s. Last read position: chr10:87,364,850
INFO 2026-06-03 20:17:23 MarkDuplicates Tracking 406254 as yet unmatched pairs. 9322 records in RAM.
INFO 2026-06-03 20:17:26 MarkDuplicates Read 308,000,000 records. Elapsed time: 00:17:29s. Time for last 1,000,000: 2s. Last read position: chr10:95,872,737
INFO 2026-06-03 20:17:26 MarkDuplicates Tracking 404943 as yet unmatched pairs. 8005 records in RAM.
INFO 2026-06-03 20:17:28 MarkDuplicates Read 309,000,000 records. Elapsed time: 00:17:32s. Time for last 1,000,000: 2s. Last read position: chr10:100,924,273
INFO 2026-06-03 20:17:28 MarkDuplicates Tracking 403586 as yet unmatched pairs. 6645 records in RAM.
INFO 2026-06-03 20:17:31 MarkDuplicates Read 310,000,000 records. Elapsed time: 00:17:35s. Time for last 1,000,000: 2s. Last read position: chr10:103,603,098
INFO 2026-06-03 20:17:31 MarkDuplicates Tracking 402115 as yet unmatched pairs. 5170 records in RAM.
INFO 2026-06-03 20:17:33 MarkDuplicates Read 311,000,000 records. Elapsed time: 00:17:37s. Time for last 1,000,000: 2s. Last read position: chr10:114,571,368
INFO 2026-06-03 20:17:33 MarkDuplicates Tracking 400729 as yet unmatched pairs. 3771 records in RAM.
INFO 2026-06-03 20:17:35 MarkDuplicates Read 312,000,000 records. Elapsed time: 00:17:39s. Time for last 1,000,000: 2s. Last read position: chr10:121,515,152
INFO 2026-06-03 20:17:35 MarkDuplicates Tracking 399610 as yet unmatched pairs. 2649 records in RAM.
INFO 2026-06-03 20:17:37 MarkDuplicates Read 313,000,000 records. Elapsed time: 00:17:41s. Time for last 1,000,000: 2s. Last read position: chr10:128,105,061
INFO 2026-06-03 20:17:37 MarkDuplicates Tracking 398203 as yet unmatched pairs. 1231 records in RAM.
INFO 2026-06-03 20:17:40 MarkDuplicates Read 314,000,000 records. Elapsed time: 00:17:44s. Time for last 1,000,000: 2s. Last read position: chr11:319,871
INFO 2026-06-03 20:17:40 MarkDuplicates Tracking 397131 as yet unmatched pairs. 44037 records in RAM.
INFO 2026-06-03 20:17:42 MarkDuplicates Read 315,000,000 records. Elapsed time: 00:17:46s. Time for last 1,000,000: 2s. Last read position: chr11:771,070
INFO 2026-06-03 20:17:42 MarkDuplicates Tracking 395400 as yet unmatched pairs. 42304 records in RAM.
INFO 2026-06-03 20:17:45 MarkDuplicates Read 316,000,000 records. Elapsed time: 00:17:49s. Time for last 1,000,000: 2s. Last read position: chr11:1,450,713
INFO 2026-06-03 20:17:45 MarkDuplicates Tracking 393243 as yet unmatched pairs. 40146 records in RAM.
INFO 2026-06-03 20:17:47 MarkDuplicates Read 317,000,000 records. Elapsed time: 00:17:51s. Time for last 1,000,000: 2s. Last read position: chr11:3,039,864
INFO 2026-06-03 20:17:47 MarkDuplicates Tracking 391588 as yet unmatched pairs. 38487 records in RAM.
INFO 2026-06-03 20:17:49 MarkDuplicates Read 318,000,000 records. Elapsed time: 00:17:53s. Time for last 1,000,000: 2s. Last read position: chr11:7,651,694
INFO 2026-06-03 20:17:49 MarkDuplicates Tracking 390210 as yet unmatched pairs. 37087 records in RAM.
INFO 2026-06-03 20:17:51 MarkDuplicates Read 319,000,000 records. Elapsed time: 00:17:55s. Time for last 1,000,000: 2s. Last read position: chr11:12,879,798
INFO 2026-06-03 20:17:51 MarkDuplicates Tracking 388917 as yet unmatched pairs. 35783 records in RAM.
INFO 2026-06-03 20:17:54 MarkDuplicates Read 320,000,000 records. Elapsed time: 00:17:58s. Time for last 1,000,000: 2s. Last read position: chr11:18,616,933
INFO 2026-06-03 20:17:54 MarkDuplicates Tracking 387645 as yet unmatched pairs. 34510 records in RAM.
INFO 2026-06-03 20:17:56 MarkDuplicates Read 321,000,000 records. Elapsed time: 00:18:00s. Time for last 1,000,000: 2s. Last read position: chr11:34,895,014
INFO 2026-06-03 20:17:56 MarkDuplicates Tracking 386414 as yet unmatched pairs. 33272 records in RAM.
INFO 2026-06-03 20:17:58 MarkDuplicates Read 322,000,000 records. Elapsed time: 00:18:02s. Time for last 1,000,000: 2s. Last read position: chr11:46,379,898
INFO 2026-06-03 20:17:58 MarkDuplicates Tracking 384986 as yet unmatched pairs. 31831 records in RAM.
INFO 2026-06-03 20:18:02 MarkDuplicates Read 323,000,000 records. Elapsed time: 00:18:05s. Time for last 1,000,000: 3s. Last read position: chr11:47,847,929
INFO 2026-06-03 20:18:02 MarkDuplicates Tracking 383458 as yet unmatched pairs. 30295 records in RAM.
INFO 2026-06-03 20:18:04 MarkDuplicates Read 324,000,000 records. Elapsed time: 00:18:08s. Time for last 1,000,000: 2s. Last read position: chr11:58,609,828
INFO 2026-06-03 20:18:04 MarkDuplicates Tracking 381994 as yet unmatched pairs. 28824 records in RAM.
INFO 2026-06-03 20:18:07 MarkDuplicates Read 325,000,000 records. Elapsed time: 00:18:11s. Time for last 1,000,000: 2s. Last read position: chr11:61,771,599
INFO 2026-06-03 20:18:07 MarkDuplicates Tracking 380949 as yet unmatched pairs. 27761 records in RAM.
INFO 2026-06-03 20:18:09 MarkDuplicates Read 326,000,000 records. Elapsed time: 00:18:13s. Time for last 1,000,000: 2s. Last read position: chr11:62,525,162
INFO 2026-06-03 20:18:09 MarkDuplicates Tracking 379973 as yet unmatched pairs. 26784 records in RAM.
INFO 2026-06-03 20:18:11 MarkDuplicates Read 327,000,000 records. Elapsed time: 00:18:15s. Time for last 1,000,000: 2s. Last read position: chr11:62,608,586
INFO 2026-06-03 20:18:11 MarkDuplicates Tracking 378182 as yet unmatched pairs. 24992 records in RAM.
INFO 2026-06-03 20:18:13 MarkDuplicates Read 328,000,000 records. Elapsed time: 00:18:17s. Time for last 1,000,000: 2s. Last read position: chr11:64,207,457
INFO 2026-06-03 20:18:13 MarkDuplicates Tracking 376516 as yet unmatched pairs. 23322 records in RAM.
INFO 2026-06-03 20:18:16 MarkDuplicates Read 329,000,000 records. Elapsed time: 00:18:19s. Time for last 1,000,000: 2s. Last read position: chr11:64,909,911
INFO 2026-06-03 20:18:16 MarkDuplicates Tracking 374776 as yet unmatched pairs. 21577 records in RAM.
INFO 2026-06-03 20:18:18 MarkDuplicates Read 330,000,000 records. Elapsed time: 00:18:22s. Time for last 1,000,000: 2s. Last read position: chr11:65,573,565
INFO 2026-06-03 20:18:18 MarkDuplicates Tracking 373241 as yet unmatched pairs. 20024 records in RAM.
INFO 2026-06-03 20:18:20 MarkDuplicates Read 331,000,000 records. Elapsed time: 00:18:24s. Time for last 1,000,000: 2s. Last read position: chr11:66,003,655
INFO 2026-06-03 20:18:20 MarkDuplicates Tracking 371600 as yet unmatched pairs. 18381 records in RAM.
INFO 2026-06-03 20:18:22 MarkDuplicates Read 332,000,000 records. Elapsed time: 00:18:26s. Time for last 1,000,000: 2s. Last read position: chr11:67,393,763
INFO 2026-06-03 20:18:22 MarkDuplicates Tracking 369690 as yet unmatched pairs. 16467 records in RAM.
INFO 2026-06-03 20:18:24 MarkDuplicates Read 333,000,000 records. Elapsed time: 00:18:28s. Time for last 1,000,000: 2s. Last read position: chr11:68,446,474
INFO 2026-06-03 20:18:24 MarkDuplicates Tracking 368220 as yet unmatched pairs. 14995 records in RAM.
INFO 2026-06-03 20:18:27 MarkDuplicates Read 334,000,000 records. Elapsed time: 00:18:31s. Time for last 1,000,000: 2s. Last read position: chr11:72,003,993
INFO 2026-06-03 20:18:27 MarkDuplicates Tracking 366818 as yet unmatched pairs. 13589 records in RAM.
INFO 2026-06-03 20:18:29 MarkDuplicates Read 335,000,000 records. Elapsed time: 00:18:33s. Time for last 1,000,000: 2s. Last read position: chr11:74,034,132
INFO 2026-06-03 20:18:29 MarkDuplicates Tracking 365073 as yet unmatched pairs. 11842 records in RAM.
INFO 2026-06-03 20:18:31 MarkDuplicates Read 336,000,000 records. Elapsed time: 00:18:35s. Time for last 1,000,000: 2s. Last read position: chr11:77,667,199
INFO 2026-06-03 20:18:31 MarkDuplicates Tracking 363679 as yet unmatched pairs. 10444 records in RAM.
INFO 2026-06-03 20:18:33 MarkDuplicates Read 337,000,000 records. Elapsed time: 00:18:37s. Time for last 1,000,000: 2s. Last read position: chr11:92,774,083
INFO 2026-06-03 20:18:33 MarkDuplicates Tracking 362241 as yet unmatched pairs. 9000 records in RAM.
INFO 2026-06-03 20:18:36 MarkDuplicates Read 338,000,000 records. Elapsed time: 00:18:39s. Time for last 1,000,000: 2s. Last read position: chr11:108,243,959
INFO 2026-06-03 20:18:36 MarkDuplicates Tracking 361225 as yet unmatched pairs. 7970 records in RAM.
INFO 2026-06-03 20:18:38 MarkDuplicates Read 339,000,000 records. Elapsed time: 00:18:42s. Time for last 1,000,000: 2s. Last read position: chr11:117,229,524
INFO 2026-06-03 20:18:38 MarkDuplicates Tracking 359776 as yet unmatched pairs. 6521 records in RAM.
INFO 2026-06-03 20:18:40 MarkDuplicates Read 340,000,000 records. Elapsed time: 00:18:44s. Time for last 1,000,000: 2s. Last read position: chr11:118,900,002
INFO 2026-06-03 20:18:40 MarkDuplicates Tracking 358411 as yet unmatched pairs. 5150 records in RAM.
INFO 2026-06-03 20:18:42 MarkDuplicates Read 341,000,000 records. Elapsed time: 00:18:46s. Time for last 1,000,000: 2s. Last read position: chr11:120,460,717
INFO 2026-06-03 20:18:42 MarkDuplicates Tracking 357128 as yet unmatched pairs. 3854 records in RAM.
INFO 2026-06-03 20:18:44 MarkDuplicates Read 342,000,000 records. Elapsed time: 00:18:48s. Time for last 1,000,000: 2s. Last read position: chr11:126,267,700
INFO 2026-06-03 20:18:44 MarkDuplicates Tracking 355765 as yet unmatched pairs. 2489 records in RAM.
INFO 2026-06-03 20:18:47 MarkDuplicates Read 343,000,000 records. Elapsed time: 00:18:51s. Time for last 1,000,000: 2s. Last read position: chr11:130,194,180
INFO 2026-06-03 20:18:47 MarkDuplicates Tracking 354704 as yet unmatched pairs. 1417 records in RAM.
INFO 2026-06-03 20:18:49 MarkDuplicates Read 344,000,000 records. Elapsed time: 00:18:53s. Time for last 1,000,000: 2s. Last read position: chr12:1,115,872
INFO 2026-06-03 20:18:49 MarkDuplicates Tracking 352755 as yet unmatched pairs. 39227 records in RAM.
INFO 2026-06-03 20:18:52 MarkDuplicates Read 345,000,000 records. Elapsed time: 00:18:55s. Time for last 1,000,000: 2s. Last read position: chr12:6,517,885
INFO 2026-06-03 20:18:52 MarkDuplicates Tracking 351373 as yet unmatched pairs. 37832 records in RAM.
INFO 2026-06-03 20:18:54 MarkDuplicates Read 346,000,000 records. Elapsed time: 00:18:58s. Time for last 1,000,000: 2s. Last read position: chr12:6,937,032
INFO 2026-06-03 20:18:54 MarkDuplicates Tracking 349871 as yet unmatched pairs. 36330 records in RAM.
INFO 2026-06-03 20:18:56 MarkDuplicates Read 347,000,000 records. Elapsed time: 00:19:00s. Time for last 1,000,000: 2s. Last read position: chr12:9,301,157
INFO 2026-06-03 20:18:56 MarkDuplicates Tracking 348510 as yet unmatched pairs. 34967 records in RAM.
INFO 2026-06-03 20:18:58 MarkDuplicates Read 348,000,000 records. Elapsed time: 00:19:02s. Time for last 1,000,000: 2s. Last read position: chr12:15,624,331
INFO 2026-06-03 20:18:58 MarkDuplicates Tracking 347413 as yet unmatched pairs. 33864 records in RAM.
INFO 2026-06-03 20:19:00 MarkDuplicates Read 349,000,000 records. Elapsed time: 00:19:04s. Time for last 1,000,000: 2s. Last read position: chr12:30,666,182
INFO 2026-06-03 20:19:00 MarkDuplicates Tracking 346080 as yet unmatched pairs. 32525 records in RAM.
INFO 2026-06-03 20:19:03 MarkDuplicates Read 350,000,000 records. Elapsed time: 00:19:07s. Time for last 1,000,000: 2s. Last read position: chr12:46,204,587
INFO 2026-06-03 20:19:03 MarkDuplicates Tracking 345185 as yet unmatched pairs. 31629 records in RAM.
INFO 2026-06-03 20:19:05 MarkDuplicates Read 351,000,000 records. Elapsed time: 00:19:09s. Time for last 1,000,000: 2s. Last read position: chr12:49,032,632
INFO 2026-06-03 20:19:05 MarkDuplicates Tracking 343400 as yet unmatched pairs. 29843 records in RAM.
INFO 2026-06-03 20:19:07 MarkDuplicates Read 352,000,000 records. Elapsed time: 00:19:11s. Time for last 1,000,000: 2s. Last read position: chr12:49,186,657
INFO 2026-06-03 20:19:07 MarkDuplicates Tracking 342177 as yet unmatched pairs. 28619 records in RAM.
INFO 2026-06-03 20:19:09 MarkDuplicates Read 353,000,000 records. Elapsed time: 00:19:13s. Time for last 1,000,000: 2s. Last read position: chr12:50,732,397
INFO 2026-06-03 20:19:09 MarkDuplicates Tracking 340800 as yet unmatched pairs. 27242 records in RAM.
INFO 2026-06-03 20:19:11 MarkDuplicates Read 354,000,000 records. Elapsed time: 00:19:15s. Time for last 1,000,000: 2s. Last read position: chr12:52,904,803
INFO 2026-06-03 20:19:11 MarkDuplicates Tracking 342989 as yet unmatched pairs. 29426 records in RAM.
INFO 2026-06-03 20:19:14 MarkDuplicates Read 355,000,000 records. Elapsed time: 00:19:18s. Time for last 1,000,000: 2s. Last read position: chr12:53,213,605
INFO 2026-06-03 20:19:14 MarkDuplicates Tracking 337882 as yet unmatched pairs. 24313 records in RAM.
INFO 2026-06-03 20:19:16 MarkDuplicates Read 356,000,000 records. Elapsed time: 00:19:20s. Time for last 1,000,000: 2s. Last read position: chr12:54,011,269
INFO 2026-06-03 20:19:16 MarkDuplicates Tracking 336630 as yet unmatched pairs. 23060 records in RAM.
INFO 2026-06-03 20:19:19 MarkDuplicates Read 357,000,000 records. Elapsed time: 00:19:22s. Time for last 1,000,000: 2s. Last read position: chr12:55,727,288
INFO 2026-06-03 20:19:19 MarkDuplicates Tracking 337514 as yet unmatched pairs. 23939 records in RAM.
INFO 2026-06-03 20:19:21 MarkDuplicates Read 358,000,000 records. Elapsed time: 00:19:25s. Time for last 1,000,000: 2s. Last read position: chr12:56,243,113
INFO 2026-06-03 20:19:21 MarkDuplicates Tracking 334198 as yet unmatched pairs. 20621 records in RAM.
INFO 2026-06-03 20:19:23 MarkDuplicates Read 359,000,000 records. Elapsed time: 00:19:27s. Time for last 1,000,000: 2s. Last read position: chr12:56,712,459
INFO 2026-06-03 20:19:23 MarkDuplicates Tracking 335661 as yet unmatched pairs. 22069 records in RAM.
INFO 2026-06-03 20:19:26 MarkDuplicates Read 360,000,000 records. Elapsed time: 00:19:29s. Time for last 1,000,000: 2s. Last read position: chr12:57,098,513
INFO 2026-06-03 20:19:26 MarkDuplicates Tracking 333915 as yet unmatched pairs. 20313 records in RAM.
INFO 2026-06-03 20:19:28 MarkDuplicates Read 361,000,000 records. Elapsed time: 00:19:32s. Time for last 1,000,000: 2s. Last read position: chr12:57,178,889
INFO 2026-06-03 20:19:28 MarkDuplicates Tracking 330333 as yet unmatched pairs. 16731 records in RAM.
INFO 2026-06-03 20:19:31 MarkDuplicates Read 362,000,000 records. Elapsed time: 00:19:35s. Time for last 1,000,000: 3s. Last read position: chr12:57,695,778
INFO 2026-06-03 20:19:31 MarkDuplicates Tracking 329279 as yet unmatched pairs. 15674 records in RAM.
INFO 2026-06-03 20:19:33 MarkDuplicates Read 363,000,000 records. Elapsed time: 00:19:37s. Time for last 1,000,000: 2s. Last read position: chr12:66,323,990
INFO 2026-06-03 20:19:33 MarkDuplicates Tracking 327570 as yet unmatched pairs. 13958 records in RAM.
INFO 2026-06-03 20:19:36 MarkDuplicates Read 364,000,000 records. Elapsed time: 00:19:40s. Time for last 1,000,000: 2s. Last read position: chr12:71,132,699
INFO 2026-06-03 20:19:36 MarkDuplicates Tracking 329115 as yet unmatched pairs. 15498 records in RAM.
INFO 2026-06-03 20:19:38 MarkDuplicates Read 365,000,000 records. Elapsed time: 00:19:42s. Time for last 1,000,000: 2s. Last read position: chr12:79,808,513
INFO 2026-06-03 20:19:38 MarkDuplicates Tracking 324998 as yet unmatched pairs. 11377 records in RAM.
INFO 2026-06-03 20:19:40 MarkDuplicates Read 366,000,000 records. Elapsed time: 00:19:44s. Time for last 1,000,000: 2s. Last read position: chr12:96,035,450
INFO 2026-06-03 20:19:40 MarkDuplicates Tracking 323745 as yet unmatched pairs. 10121 records in RAM.
INFO 2026-06-03 20:19:42 MarkDuplicates Read 367,000,000 records. Elapsed time: 00:19:46s. Time for last 1,000,000: 2s. Last read position: chr12:104,102,045
INFO 2026-06-03 20:19:42 MarkDuplicates Tracking 322564 as yet unmatched pairs. 8938 records in RAM.
INFO 2026-06-03 20:19:44 MarkDuplicates Read 368,000,000 records. Elapsed time: 00:19:48s. Time for last 1,000,000: 1s. Last read position: chr12:110,024,069
INFO 2026-06-03 20:19:44 MarkDuplicates Tracking 321216 as yet unmatched pairs. 7581 records in RAM.
INFO 2026-06-03 20:19:47 MarkDuplicates Read 369,000,000 records. Elapsed time: 00:19:50s. Time for last 1,000,000: 2s. Last read position: chr12:112,908,640
INFO 2026-06-03 20:19:47 MarkDuplicates Tracking 319977 as yet unmatched pairs. 6332 records in RAM.
INFO 2026-06-03 20:19:49 MarkDuplicates Read 370,000,000 records. Elapsed time: 00:19:53s. Time for last 1,000,000: 2s. Last read position: chr12:120,197,399
INFO 2026-06-03 20:19:49 MarkDuplicates Tracking 319382 as yet unmatched pairs. 5734 records in RAM.
INFO 2026-06-03 20:19:51 MarkDuplicates Read 371,000,000 records. Elapsed time: 00:19:55s. Time for last 1,000,000: 2s. Last read position: chr12:122,377,387
INFO 2026-06-03 20:19:51 MarkDuplicates Tracking 317043 as yet unmatched pairs. 3395 records in RAM.
INFO 2026-06-03 20:19:54 MarkDuplicates Read 372,000,000 records. Elapsed time: 00:19:57s. Time for last 1,000,000: 2s. Last read position: chr12:124,912,427
INFO 2026-06-03 20:19:54 MarkDuplicates Tracking 315663 as yet unmatched pairs. 2001 records in RAM.
INFO 2026-06-03 20:19:56 MarkDuplicates Read 373,000,000 records. Elapsed time: 00:20:00s. Time for last 1,000,000: 2s. Last read position: chr12:132,825,667
INFO 2026-06-03 20:19:56 MarkDuplicates Tracking 313865 as yet unmatched pairs. 193 records in RAM.
INFO 2026-06-03 20:19:59 MarkDuplicates Read 374,000,000 records. Elapsed time: 00:20:03s. Time for last 1,000,000: 3s. Last read position: chr13:23,340,879
INFO 2026-06-03 20:19:59 MarkDuplicates Tracking 312659 as yet unmatched pairs. 14354 records in RAM.
INFO 2026-06-03 20:20:02 MarkDuplicates Read 375,000,000 records. Elapsed time: 00:20:05s. Time for last 1,000,000: 2s. Last read position: chr13:27,622,895
INFO 2026-06-03 20:20:02 MarkDuplicates Tracking 312405 as yet unmatched pairs. 14099 records in RAM.
INFO 2026-06-03 20:20:04 MarkDuplicates Read 376,000,000 records. Elapsed time: 00:20:08s. Time for last 1,000,000: 2s. Last read position: chr13:36,949,968
INFO 2026-06-03 20:20:04 MarkDuplicates Tracking 310183 as yet unmatched pairs. 11869 records in RAM.
INFO 2026-06-03 20:20:06 MarkDuplicates Read 377,000,000 records. Elapsed time: 00:20:10s. Time for last 1,000,000: 2s. Last read position: chr13:44,574,224
INFO 2026-06-03 20:20:06 MarkDuplicates Tracking 308945 as yet unmatched pairs. 10625 records in RAM.
INFO 2026-06-03 20:20:08 MarkDuplicates Read 378,000,000 records. Elapsed time: 00:20:12s. Time for last 1,000,000: 2s. Last read position: chr13:48,412,203
INFO 2026-06-03 20:20:08 MarkDuplicates Tracking 307713 as yet unmatched pairs. 9391 records in RAM.
INFO 2026-06-03 20:20:10 MarkDuplicates Read 379,000,000 records. Elapsed time: 00:20:14s. Time for last 1,000,000: 2s. Last read position: chr13:73,059,520
INFO 2026-06-03 20:20:10 MarkDuplicates Tracking 306286 as yet unmatched pairs. 7957 records in RAM.
INFO 2026-06-03 20:20:12 MarkDuplicates Read 380,000,000 records. Elapsed time: 00:20:16s. Time for last 1,000,000: 2s. Last read position: chr13:95,867,412
INFO 2026-06-03 20:20:12 MarkDuplicates Tracking 304955 as yet unmatched pairs. 6611 records in RAM.
INFO 2026-06-03 20:20:15 MarkDuplicates Read 381,000,000 records. Elapsed time: 00:20:19s. Time for last 1,000,000: 2s. Last read position: chr13:102,647,232
INFO 2026-06-03 20:20:15 MarkDuplicates Tracking 303635 as yet unmatched pairs. 5273 records in RAM.
INFO 2026-06-03 20:20:17 MarkDuplicates Read 382,000,000 records. Elapsed time: 00:20:21s. Time for last 1,000,000: 2s. Last read position: chr13:110,208,871
INFO 2026-06-03 20:20:17 MarkDuplicates Tracking 302551 as yet unmatched pairs. 4187 records in RAM.
INFO 2026-06-03 20:20:19 MarkDuplicates Read 383,000,000 records. Elapsed time: 00:20:23s. Time for last 1,000,000: 2s. Last read position: chr13:112,819,384
INFO 2026-06-03 20:20:19 MarkDuplicates Tracking 300446 as yet unmatched pairs. 2071 records in RAM.
INFO 2026-06-03 20:20:21 MarkDuplicates Read 384,000,000 records. Elapsed time: 00:20:25s. Time for last 1,000,000: 2s. Last read position: chr13:114,304,847
INFO 2026-06-03 20:20:21 MarkDuplicates Tracking 298479 as yet unmatched pairs. 98 records in RAM.
INFO 2026-06-03 20:20:24 MarkDuplicates Read 385,000,000 records. Elapsed time: 00:20:28s. Time for last 1,000,000: 2s. Last read position: chr14:21,231,027
INFO 2026-06-03 20:20:24 MarkDuplicates Tracking 297812 as yet unmatched pairs. 20274 records in RAM.
INFO 2026-06-03 20:20:27 MarkDuplicates Read 386,000,000 records. Elapsed time: 00:20:31s. Time for last 1,000,000: 2s. Last read position: chr14:23,322,216
INFO 2026-06-03 20:20:27 MarkDuplicates Tracking 295734 as yet unmatched pairs. 18193 records in RAM.
INFO 2026-06-03 20:20:29 MarkDuplicates Read 387,000,000 records. Elapsed time: 00:20:33s. Time for last 1,000,000: 2s. Last read position: chr14:31,101,199
INFO 2026-06-03 20:20:29 MarkDuplicates Tracking 294126 as yet unmatched pairs. 16573 records in RAM.
INFO 2026-06-03 20:20:31 MarkDuplicates Read 388,000,000 records. Elapsed time: 00:20:35s. Time for last 1,000,000: 2s. Last read position: chr14:35,046,556
INFO 2026-06-03 20:20:31 MarkDuplicates Tracking 292751 as yet unmatched pairs. 15195 records in RAM.
INFO 2026-06-03 20:20:33 MarkDuplicates Read 389,000,000 records. Elapsed time: 00:20:37s. Time for last 1,000,000: 2s. Last read position: chr14:49,599,122
INFO 2026-06-03 20:20:33 MarkDuplicates Tracking 291480 as yet unmatched pairs. 13917 records in RAM.
INFO 2026-06-03 20:20:36 MarkDuplicates Read 390,000,000 records. Elapsed time: 00:20:39s. Time for last 1,000,000: 2s. Last read position: chr14:54,481,434
INFO 2026-06-03 20:20:36 MarkDuplicates Tracking 290454 as yet unmatched pairs. 12878 records in RAM.
INFO 2026-06-03 20:20:38 MarkDuplicates Read 391,000,000 records. Elapsed time: 00:20:42s. Time for last 1,000,000: 2s. Last read position: chr14:63,422,004
INFO 2026-06-03 20:20:38 MarkDuplicates Tracking 288941 as yet unmatched pairs. 11364 records in RAM.
INFO 2026-06-03 20:20:40 MarkDuplicates Read 392,000,000 records. Elapsed time: 00:20:44s. Time for last 1,000,000: 2s. Last read position: chr14:68,884,254
INFO 2026-06-03 20:20:40 MarkDuplicates Tracking 287430 as yet unmatched pairs. 9850 records in RAM.
INFO 2026-06-03 20:20:42 MarkDuplicates Read 393,000,000 records. Elapsed time: 00:20:46s. Time for last 1,000,000: 2s. Last read position: chr14:74,504,001
INFO 2026-06-03 20:20:42 MarkDuplicates Tracking 286034 as yet unmatched pairs. 8451 records in RAM.
INFO 2026-06-03 20:20:44 MarkDuplicates Read 394,000,000 records. Elapsed time: 00:20:48s. Time for last 1,000,000: 2s. Last read position: chr14:88,857,221
INFO 2026-06-03 20:20:44 MarkDuplicates Tracking 284604 as yet unmatched pairs. 7016 records in RAM.
INFO 2026-06-03 20:20:46 MarkDuplicates Read 395,000,000 records. Elapsed time: 00:20:50s. Time for last 1,000,000: 2s. Last read position: chr14:95,203,421
INFO 2026-06-03 20:20:46 MarkDuplicates Tracking 283186 as yet unmatched pairs. 5593 records in RAM.
INFO 2026-06-03 20:20:49 MarkDuplicates Read 396,000,000 records. Elapsed time: 00:20:53s. Time for last 1,000,000: 2s. Last read position: chr14:102,082,142
INFO 2026-06-03 20:20:49 MarkDuplicates Tracking 282004 as yet unmatched pairs. 4400 records in RAM.
INFO 2026-06-03 20:20:51 MarkDuplicates Read 397,000,000 records. Elapsed time: 00:20:55s. Time for last 1,000,000: 2s. Last read position: chr14:104,714,409
INFO 2026-06-03 20:20:51 MarkDuplicates Tracking 281016 as yet unmatched pairs. 3412 records in RAM.
INFO 2026-06-03 20:20:53 MarkDuplicates Read 398,000,000 records. Elapsed time: 00:20:57s. Time for last 1,000,000: 2s. Last read position: chr14:105,588,260
INFO 2026-06-03 20:20:53 MarkDuplicates Tracking 278992 as yet unmatched pairs. 1386 records in RAM.
INFO 2026-06-03 20:20:55 MarkDuplicates Read 399,000,000 records. Elapsed time: 00:20:59s. Time for last 1,000,000: 1s. Last read position: chr14:105,863,198
INFO 2026-06-03 20:20:55 MarkDuplicates Tracking 277649 as yet unmatched pairs. 42 records in RAM.
INFO 2026-06-03 20:20:58 MarkDuplicates Read 400,000,000 records. Elapsed time: 00:21:02s. Time for last 1,000,000: 2s. Last read position: chr15:28,237,027
INFO 2026-06-03 20:20:58 MarkDuplicates Tracking 276705 as yet unmatched pairs. 31981 records in RAM.
INFO 2026-06-03 20:21:00 MarkDuplicates Read 401,000,000 records. Elapsed time: 00:21:04s. Time for last 1,000,000: 2s. Last read position: chr15:30,408,441
INFO 2026-06-03 20:21:00 MarkDuplicates Tracking 275474 as yet unmatched pairs. 30748 records in RAM.
INFO 2026-06-03 20:21:02 MarkDuplicates Read 402,000,000 records. Elapsed time: 00:21:06s. Time for last 1,000,000: 1s. Last read position: chr15:32,635,779
INFO 2026-06-03 20:21:02 MarkDuplicates Tracking 275021 as yet unmatched pairs. 30291 records in RAM.
INFO 2026-06-03 20:21:04 MarkDuplicates Read 403,000,000 records. Elapsed time: 00:21:08s. Time for last 1,000,000: 2s. Last read position: chr15:34,528,411
INFO 2026-06-03 20:21:04 MarkDuplicates Tracking 273621 as yet unmatched pairs. 28891 records in RAM.
INFO 2026-06-03 20:21:06 MarkDuplicates Read 404,000,000 records. Elapsed time: 00:21:10s. Time for last 1,000,000: 2s. Last read position: chr15:40,353,231
INFO 2026-06-03 20:21:06 MarkDuplicates Tracking 275465 as yet unmatched pairs. 30735 records in RAM.
INFO 2026-06-03 20:21:09 MarkDuplicates Read 405,000,000 records. Elapsed time: 00:21:13s. Time for last 1,000,000: 2s. Last read position: chr15:41,477,484
INFO 2026-06-03 20:21:09 MarkDuplicates Tracking 270849 as yet unmatched pairs. 26115 records in RAM.
INFO 2026-06-03 20:21:11 MarkDuplicates Read 406,000,000 records. Elapsed time: 00:21:15s. Time for last 1,000,000: 2s. Last read position: chr15:42,267,978
INFO 2026-06-03 20:21:11 MarkDuplicates Tracking 269599 as yet unmatched pairs. 24858 records in RAM.
INFO 2026-06-03 20:21:13 MarkDuplicates Read 407,000,000 records. Elapsed time: 00:21:17s. Time for last 1,000,000: 2s. Last read position: chr15:43,573,084
INFO 2026-06-03 20:21:13 MarkDuplicates Tracking 268332 as yet unmatched pairs. 23588 records in RAM.
INFO 2026-06-03 20:21:15 MarkDuplicates Read 408,000,000 records. Elapsed time: 00:21:19s. Time for last 1,000,000: 2s. Last read position: chr15:43,775,253
INFO 2026-06-03 20:21:15 MarkDuplicates Tracking 267046 as yet unmatched pairs. 22302 records in RAM.
INFO 2026-06-03 20:21:17 MarkDuplicates Read 409,000,000 records. Elapsed time: 00:21:21s. Time for last 1,000,000: 2s. Last read position: chr15:44,711,551
INFO 2026-06-03 20:21:17 MarkDuplicates Tracking 267850 as yet unmatched pairs. 23106 records in RAM.
INFO 2026-06-03 20:21:20 MarkDuplicates Read 410,000,000 records. Elapsed time: 00:21:24s. Time for last 1,000,000: 2s. Last read position: chr15:50,228,979
INFO 2026-06-03 20:21:20 MarkDuplicates Tracking 264470 as yet unmatched pairs. 19725 records in RAM.
INFO 2026-06-03 20:21:22 MarkDuplicates Read 411,000,000 records. Elapsed time: 00:21:26s. Time for last 1,000,000: 2s. Last read position: chr15:56,094,576
INFO 2026-06-03 20:21:22 MarkDuplicates Tracking 263157 as yet unmatched pairs. 18401 records in RAM.
INFO 2026-06-03 20:21:25 MarkDuplicates Read 412,000,000 records. Elapsed time: 00:21:29s. Time for last 1,000,000: 2s. Last read position: chr15:59,207,207
INFO 2026-06-03 20:21:25 MarkDuplicates Tracking 261928 as yet unmatched pairs. 17169 records in RAM.
INFO 2026-06-03 20:21:27 MarkDuplicates Read 413,000,000 records. Elapsed time: 00:21:31s. Time for last 1,000,000: 2s. Last read position: chr15:63,062,257
INFO 2026-06-03 20:21:27 MarkDuplicates Tracking 261111 as yet unmatched pairs. 16344 records in RAM.
INFO 2026-06-03 20:21:29 MarkDuplicates Read 414,000,000 records. Elapsed time: 00:21:33s. Time for last 1,000,000: 2s. Last read position: chr15:65,446,903
INFO 2026-06-03 20:21:29 MarkDuplicates Tracking 259050 as yet unmatched pairs. 14280 records in RAM.
INFO 2026-06-03 20:21:32 MarkDuplicates Read 415,000,000 records. Elapsed time: 00:21:36s. Time for last 1,000,000: 2s. Last read position: chr15:67,806,682
INFO 2026-06-03 20:21:32 MarkDuplicates Tracking 257612 as yet unmatched pairs. 12837 records in RAM.
INFO 2026-06-03 20:21:34 MarkDuplicates Read 416,000,000 records. Elapsed time: 00:21:38s. Time for last 1,000,000: 2s. Last read position: chr15:72,209,798
INFO 2026-06-03 20:21:34 MarkDuplicates Tracking 256627 as yet unmatched pairs. 11849 records in RAM.
INFO 2026-06-03 20:21:37 MarkDuplicates Read 417,000,000 records. Elapsed time: 00:21:40s. Time for last 1,000,000: 2s. Last read position: chr15:74,615,865
INFO 2026-06-03 20:21:37 MarkDuplicates Tracking 254912 as yet unmatched pairs. 10132 records in RAM.
INFO 2026-06-03 20:21:39 MarkDuplicates Read 418,000,000 records. Elapsed time: 00:21:43s. Time for last 1,000,000: 2s. Last read position: chr15:75,364,072
INFO 2026-06-03 20:21:39 MarkDuplicates Tracking 253423 as yet unmatched pairs. 8640 records in RAM.
INFO 2026-06-03 20:21:42 MarkDuplicates Read 419,000,000 records. Elapsed time: 00:21:46s. Time for last 1,000,000: 2s. Last read position: chr15:78,497,104
INFO 2026-06-03 20:21:42 MarkDuplicates Tracking 251983 as yet unmatched pairs. 7193 records in RAM.
INFO 2026-06-03 20:21:44 MarkDuplicates Read 420,000,000 records. Elapsed time: 00:21:48s. Time for last 1,000,000: 2s. Last read position: chr15:82,989,899
INFO 2026-06-03 20:21:44 MarkDuplicates Tracking 250553 as yet unmatched pairs. 5750 records in RAM.
INFO 2026-06-03 20:21:46 MarkDuplicates Read 421,000,000 records. Elapsed time: 00:21:50s. Time for last 1,000,000: 2s. Last read position: chr15:88,855,575
INFO 2026-06-03 20:21:46 MarkDuplicates Tracking 249322 as yet unmatched pairs. 4516 records in RAM.
INFO 2026-06-03 20:21:48 MarkDuplicates Read 422,000,000 records. Elapsed time: 00:21:52s. Time for last 1,000,000: 2s. Last read position: chr15:90,230,936
INFO 2026-06-03 20:21:48 MarkDuplicates Tracking 248503 as yet unmatched pairs. 3690 records in RAM.
INFO 2026-06-03 20:21:50 MarkDuplicates Read 423,000,000 records. Elapsed time: 00:21:54s. Time for last 1,000,000: 2s. Last read position: chr15:90,969,524
INFO 2026-06-03 20:21:50 MarkDuplicates Tracking 246477 as yet unmatched pairs. 1664 records in RAM.
INFO 2026-06-03 20:21:53 MarkDuplicates Read 424,000,000 records. Elapsed time: 00:21:56s. Time for last 1,000,000: 2s. Last read position: chr15:101,432,005
INFO 2026-06-03 20:21:53 MarkDuplicates Tracking 244954 as yet unmatched pairs. 133 records in RAM.
INFO 2026-06-03 20:21:55 MarkDuplicates Read 425,000,000 records. Elapsed time: 00:21:59s. Time for last 1,000,000: 2s. Last read position: chr16:673,056
INFO 2026-06-03 20:21:55 MarkDuplicates Tracking 243565 as yet unmatched pairs. 39127 records in RAM.
INFO 2026-06-03 20:21:58 MarkDuplicates Read 426,000,000 records. Elapsed time: 00:22:01s. Time for last 1,000,000: 2s. Last read position: chr16:1,940,816
INFO 2026-06-03 20:21:58 MarkDuplicates Tracking 241511 as yet unmatched pairs. 37069 records in RAM.
INFO 2026-06-03 20:22:00 MarkDuplicates Read 427,000,000 records. Elapsed time: 00:22:04s. Time for last 1,000,000: 2s. Last read position: chr16:2,253,936
INFO 2026-06-03 20:22:00 MarkDuplicates Tracking 240165 as yet unmatched pairs. 35721 records in RAM.
INFO 2026-06-03 20:22:02 MarkDuplicates Read 428,000,000 records. Elapsed time: 00:22:06s. Time for last 1,000,000: 2s. Last read position: chr16:2,775,454
INFO 2026-06-03 20:22:02 MarkDuplicates Tracking 239635 as yet unmatched pairs. 35186 records in RAM.
INFO 2026-06-03 20:22:04 MarkDuplicates Read 429,000,000 records. Elapsed time: 00:22:08s. Time for last 1,000,000: 2s. Last read position: chr16:4,609,664
INFO 2026-06-03 20:22:04 MarkDuplicates Tracking 236766 as yet unmatched pairs. 32309 records in RAM.
INFO 2026-06-03 20:22:06 MarkDuplicates Read 430,000,000 records. Elapsed time: 00:22:10s. Time for last 1,000,000: 2s. Last read position: chr16:12,568,541
INFO 2026-06-03 20:22:06 MarkDuplicates Tracking 235367 as yet unmatched pairs. 30910 records in RAM.
INFO 2026-06-03 20:22:08 MarkDuplicates Read 431,000,000 records. Elapsed time: 00:22:12s. Time for last 1,000,000: 1s. Last read position: chr16:15,114,539
INFO 2026-06-03 20:22:08 MarkDuplicates Tracking 234656 as yet unmatched pairs. 30199 records in RAM.
INFO 2026-06-03 20:22:10 MarkDuplicates Read 432,000,000 records. Elapsed time: 00:22:14s. Time for last 1,000,000: 1s. Last read position: chr16:16,360,963
INFO 2026-06-03 20:22:10 MarkDuplicates Tracking 234035 as yet unmatched pairs. 29578 records in RAM.
INFO 2026-06-03 20:22:12 MarkDuplicates Read 433,000,000 records. Elapsed time: 00:22:16s. Time for last 1,000,000: 1s. Last read position: chr16:18,783,011
INFO 2026-06-03 20:22:12 MarkDuplicates Tracking 234202 as yet unmatched pairs. 29745 records in RAM.
INFO 2026-06-03 20:22:14 MarkDuplicates Read 434,000,000 records. Elapsed time: 00:22:18s. Time for last 1,000,000: 2s. Last read position: chr16:21,404,851
INFO 2026-06-03 20:22:14 MarkDuplicates Tracking 232929 as yet unmatched pairs. 28470 records in RAM.
INFO 2026-06-03 20:22:16 MarkDuplicates Read 435,000,000 records. Elapsed time: 00:22:20s. Time for last 1,000,000: 1s. Last read position: chr16:21,837,416
INFO 2026-06-03 20:22:16 MarkDuplicates Tracking 231823 as yet unmatched pairs. 27363 records in RAM.
INFO 2026-06-03 20:22:18 MarkDuplicates Read 436,000,000 records. Elapsed time: 00:22:22s. Time for last 1,000,000: 2s. Last read position: chr16:22,490,836
INFO 2026-06-03 20:22:18 MarkDuplicates Tracking 231089 as yet unmatched pairs. 26626 records in RAM.
INFO 2026-06-03 20:22:20 MarkDuplicates Read 437,000,000 records. Elapsed time: 00:22:24s. Time for last 1,000,000: 1s. Last read position: chr16:23,562,632
INFO 2026-06-03 20:22:20 MarkDuplicates Tracking 230622 as yet unmatched pairs. 26154 records in RAM.
INFO 2026-06-03 20:22:22 MarkDuplicates Read 438,000,000 records. Elapsed time: 00:22:26s. Time for last 1,000,000: 2s. Last read position: chr16:28,362,557
INFO 2026-06-03 20:22:22 MarkDuplicates Tracking 229189 as yet unmatched pairs. 24719 records in RAM.
INFO 2026-06-03 20:22:24 MarkDuplicates Read 439,000,000 records. Elapsed time: 00:22:28s. Time for last 1,000,000: 1s. Last read position: chr16:28,845,414
INFO 2026-06-03 20:22:24 MarkDuplicates Tracking 228119 as yet unmatched pairs. 23648 records in RAM.
INFO 2026-06-03 20:22:26 MarkDuplicates Read 440,000,000 records. Elapsed time: 00:22:30s. Time for last 1,000,000: 1s. Last read position: chr16:29,484,961
INFO 2026-06-03 20:22:26 MarkDuplicates Tracking 227721 as yet unmatched pairs. 23245 records in RAM.
INFO 2026-06-03 20:22:28 MarkDuplicates Read 441,000,000 records. Elapsed time: 00:22:32s. Time for last 1,000,000: 1s. Last read position: chr16:29,859,487
INFO 2026-06-03 20:22:28 MarkDuplicates Tracking 226376 as yet unmatched pairs. 21900 records in RAM.
INFO 2026-06-03 20:22:30 MarkDuplicates Read 442,000,000 records. Elapsed time: 00:22:34s. Time for last 1,000,000: 1s. Last read position: chr16:30,223,277
INFO 2026-06-03 20:22:30 MarkDuplicates Tracking 224669 as yet unmatched pairs. 20192 records in RAM.
INFO 2026-06-03 20:22:32 MarkDuplicates Read 443,000,000 records. Elapsed time: 00:22:36s. Time for last 1,000,000: 2s. Last read position: chr16:30,713,209
INFO 2026-06-03 20:22:32 MarkDuplicates Tracking 223749 as yet unmatched pairs. 19270 records in RAM.
INFO 2026-06-03 20:22:34 MarkDuplicates Read 444,000,000 records. Elapsed time: 00:22:38s. Time for last 1,000,000: 2s. Last read position: chr16:31,183,895
INFO 2026-06-03 20:22:34 MarkDuplicates Tracking 223792 as yet unmatched pairs. 19310 records in RAM.
INFO 2026-06-03 20:22:36 MarkDuplicates Read 445,000,000 records. Elapsed time: 00:22:40s. Time for last 1,000,000: 2s. Last read position: chr16:47,497,432
INFO 2026-06-03 20:22:36 MarkDuplicates Tracking 221103 as yet unmatched pairs. 16619 records in RAM.
INFO 2026-06-03 20:22:38 MarkDuplicates Read 446,000,000 records. Elapsed time: 00:22:42s. Time for last 1,000,000: 2s. Last read position: chr16:56,683,222
INFO 2026-06-03 20:22:38 MarkDuplicates Tracking 219897 as yet unmatched pairs. 15409 records in RAM.
INFO 2026-06-03 20:22:40 MarkDuplicates Read 447,000,000 records. Elapsed time: 00:22:44s. Time for last 1,000,000: 2s. Last read position: chr16:58,547,199
INFO 2026-06-03 20:22:40 MarkDuplicates Tracking 218320 as yet unmatched pairs. 13829 records in RAM.
INFO 2026-06-03 20:22:43 MarkDuplicates Read 448,000,000 records. Elapsed time: 00:22:47s. Time for last 1,000,000: 2s. Last read position: chr16:67,199,580
INFO 2026-06-03 20:22:43 MarkDuplicates Tracking 216693 as yet unmatched pairs. 12200 records in RAM.
INFO 2026-06-03 20:22:45 MarkDuplicates Read 449,000,000 records. Elapsed time: 00:22:49s. Time for last 1,000,000: 2s. Last read position: chr16:68,563,523
INFO 2026-06-03 20:22:45 MarkDuplicates Tracking 215048 as yet unmatched pairs. 10553 records in RAM.
INFO 2026-06-03 20:22:48 MarkDuplicates Read 450,000,000 records. Elapsed time: 00:22:52s. Time for last 1,000,000: 2s. Last read position: chr16:69,931,565
INFO 2026-06-03 20:22:48 MarkDuplicates Tracking 213809 as yet unmatched pairs. 9291 records in RAM.
INFO 2026-06-03 20:22:50 MarkDuplicates Read 451,000,000 records. Elapsed time: 00:22:54s. Time for last 1,000,000: 2s. Last read position: chr16:71,927,614
INFO 2026-06-03 20:22:50 MarkDuplicates Tracking 212588 as yet unmatched pairs. 8067 records in RAM.
INFO 2026-06-03 20:22:52 MarkDuplicates Read 452,000,000 records. Elapsed time: 00:22:56s. Time for last 1,000,000: 2s. Last read position: chr16:75,529,266
INFO 2026-06-03 20:22:52 MarkDuplicates Tracking 210900 as yet unmatched pairs. 6378 records in RAM.
INFO 2026-06-03 20:22:54 MarkDuplicates Read 453,000,000 records. Elapsed time: 00:22:58s. Time for last 1,000,000: 2s. Last read position: chr16:84,778,961
INFO 2026-06-03 20:22:54 MarkDuplicates Tracking 209443 as yet unmatched pairs. 4910 records in RAM.
INFO 2026-06-03 20:22:57 MarkDuplicates Read 454,000,000 records. Elapsed time: 00:23:01s. Time for last 1,000,000: 2s. Last read position: chr16:88,643,382
INFO 2026-06-03 20:22:57 MarkDuplicates Tracking 208118 as yet unmatched pairs. 3581 records in RAM.
INFO 2026-06-03 20:22:59 MarkDuplicates Read 455,000,000 records. Elapsed time: 00:23:03s. Time for last 1,000,000: 2s. Last read position: chr16:89,561,234
INFO 2026-06-03 20:22:59 MarkDuplicates Tracking 207390 as yet unmatched pairs. 2851 records in RAM.
INFO 2026-06-03 20:23:02 MarkDuplicates Read 456,000,000 records. Elapsed time: 00:23:06s. Time for last 1,000,000: 2s. Last read position: chr17:714,629
INFO 2026-06-03 20:23:02 MarkDuplicates Tracking 204342 as yet unmatched pairs. 57267 records in RAM.
INFO 2026-06-03 20:23:04 MarkDuplicates Read 457,000,000 records. Elapsed time: 00:23:08s. Time for last 1,000,000: 2s. Last read position: chr17:1,365,048
INFO 2026-06-03 20:23:04 MarkDuplicates Tracking 203753 as yet unmatched pairs. 56678 records in RAM.
INFO 2026-06-03 20:23:06 MarkDuplicates Read 458,000,000 records. Elapsed time: 00:23:10s. Time for last 1,000,000: 2s. Last read position: chr17:1,736,147
INFO 2026-06-03 20:23:06 MarkDuplicates Tracking 201605 as yet unmatched pairs. 54526 records in RAM.
INFO 2026-06-03 20:23:08 MarkDuplicates Read 459,000,000 records. Elapsed time: 00:23:12s. Time for last 1,000,000: 2s. Last read position: chr17:3,724,196
INFO 2026-06-03 20:23:08 MarkDuplicates Tracking 199856 as yet unmatched pairs. 52776 records in RAM.
INFO 2026-06-03 20:23:10 MarkDuplicates Read 460,000,000 records. Elapsed time: 00:23:14s. Time for last 1,000,000: 2s. Last read position: chr17:4,716,182
INFO 2026-06-03 20:23:10 MarkDuplicates Tracking 198501 as yet unmatched pairs. 51421 records in RAM.
INFO 2026-06-03 20:23:13 MarkDuplicates Read 461,000,000 records. Elapsed time: 00:23:17s. Time for last 1,000,000: 2s. Last read position: chr17:5,004,568
INFO 2026-06-03 20:23:13 MarkDuplicates Tracking 196934 as yet unmatched pairs. 49850 records in RAM.
INFO 2026-06-03 20:23:15 MarkDuplicates Read 462,000,000 records. Elapsed time: 00:23:19s. Time for last 1,000,000: 2s. Last read position: chr17:7,241,622
INFO 2026-06-03 20:23:15 MarkDuplicates Tracking 195409 as yet unmatched pairs. 48324 records in RAM.
INFO 2026-06-03 20:23:17 MarkDuplicates Read 463,000,000 records. Elapsed time: 00:23:21s. Time for last 1,000,000: 2s. Last read position: chr17:7,565,448
INFO 2026-06-03 20:23:17 MarkDuplicates Tracking 194016 as yet unmatched pairs. 46931 records in RAM.
INFO 2026-06-03 20:23:21 MarkDuplicates Read 464,000,000 records. Elapsed time: 00:23:24s. Time for last 1,000,000: 3s. Last read position: chr17:7,911,610
INFO 2026-06-03 20:23:21 MarkDuplicates Tracking 192751 as yet unmatched pairs. 45664 records in RAM.
INFO 2026-06-03 20:23:23 MarkDuplicates Read 465,000,000 records. Elapsed time: 00:23:27s. Time for last 1,000,000: 2s. Last read position: chr17:16,121,157
INFO 2026-06-03 20:23:23 MarkDuplicates Tracking 191210 as yet unmatched pairs. 44119 records in RAM.
INFO 2026-06-03 20:23:25 MarkDuplicates Read 466,000,000 records. Elapsed time: 00:23:29s. Time for last 1,000,000: 2s. Last read position: chr17:18,487,680
INFO 2026-06-03 20:23:25 MarkDuplicates Tracking 189698 as yet unmatched pairs. 42604 records in RAM.
INFO 2026-06-03 20:23:27 MarkDuplicates Read 467,000,000 records. Elapsed time: 00:23:31s. Time for last 1,000,000: 2s. Last read position: chr17:28,639,438
INFO 2026-06-03 20:23:27 MarkDuplicates Tracking 188559 as yet unmatched pairs. 41460 records in RAM.
INFO 2026-06-03 20:23:30 MarkDuplicates Read 468,000,000 records. Elapsed time: 00:23:34s. Time for last 1,000,000: 2s. Last read position: chr17:30,956,240
INFO 2026-06-03 20:23:30 MarkDuplicates Tracking 186977 as yet unmatched pairs. 39877 records in RAM.
INFO 2026-06-03 20:23:32 MarkDuplicates Read 469,000,000 records. Elapsed time: 00:23:36s. Time for last 1,000,000: 2s. Last read position: chr17:35,844,895
INFO 2026-06-03 20:23:32 MarkDuplicates Tracking 185748 as yet unmatched pairs. 38648 records in RAM.
INFO 2026-06-03 20:23:34 MarkDuplicates Read 470,000,000 records. Elapsed time: 00:23:38s. Time for last 1,000,000: 1s. Last read position: chr17:38,729,501
INFO 2026-06-03 20:23:34 MarkDuplicates Tracking 184682 as yet unmatched pairs. 37582 records in RAM.
INFO 2026-06-03 20:23:36 MarkDuplicates Read 471,000,000 records. Elapsed time: 00:23:40s. Time for last 1,000,000: 2s. Last read position: chr17:39,715,921
INFO 2026-06-03 20:23:36 MarkDuplicates Tracking 183650 as yet unmatched pairs. 36549 records in RAM.
INFO 2026-06-03 20:23:39 MarkDuplicates Read 472,000,000 records. Elapsed time: 00:23:42s. Time for last 1,000,000: 2s. Last read position: chr17:40,879,828
INFO 2026-06-03 20:23:39 MarkDuplicates Tracking 182178 as yet unmatched pairs. 35076 records in RAM.
INFO 2026-06-03 20:23:42 MarkDuplicates Read 473,000,000 records. Elapsed time: 00:23:46s. Time for last 1,000,000: 3s. Last read position: chr17:42,582,078
INFO 2026-06-03 20:23:42 MarkDuplicates Tracking 180252 as yet unmatched pairs. 33148 records in RAM.
INFO 2026-06-03 20:23:45 MarkDuplicates Read 474,000,000 records. Elapsed time: 00:23:48s. Time for last 1,000,000: 2s. Last read position: chr17:44,074,709
INFO 2026-06-03 20:23:45 MarkDuplicates Tracking 178865 as yet unmatched pairs. 31761 records in RAM.
INFO 2026-06-03 20:23:47 MarkDuplicates Read 475,000,000 records. Elapsed time: 00:23:51s. Time for last 1,000,000: 2s. Last read position: chr17:45,549,023
INFO 2026-06-03 20:23:47 MarkDuplicates Tracking 177166 as yet unmatched pairs. 30060 records in RAM.
INFO 2026-06-03 20:23:49 MarkDuplicates Read 476,000,000 records. Elapsed time: 00:23:53s. Time for last 1,000,000: 2s. Last read position: chr17:48,058,440
INFO 2026-06-03 20:23:49 MarkDuplicates Tracking 176213 as yet unmatched pairs. 29106 records in RAM.
INFO 2026-06-03 20:23:51 MarkDuplicates Read 477,000,000 records. Elapsed time: 00:23:55s. Time for last 1,000,000: 2s. Last read position: chr17:50,186,436
INFO 2026-06-03 20:23:51 MarkDuplicates Tracking 176018 as yet unmatched pairs. 28910 records in RAM.
INFO 2026-06-03 20:23:53 MarkDuplicates Read 478,000,000 records. Elapsed time: 00:23:57s. Time for last 1,000,000: 2s. Last read position: chr17:50,188,770
INFO 2026-06-03 20:23:53 MarkDuplicates Tracking 178211 as yet unmatched pairs. 31102 records in RAM.
INFO 2026-06-03 20:23:56 MarkDuplicates Read 479,000,000 records. Elapsed time: 00:23:59s. Time for last 1,000,000: 2s. Last read position: chr17:50,190,371
INFO 2026-06-03 20:23:56 MarkDuplicates Tracking 177232 as yet unmatched pairs. 30122 records in RAM.
INFO 2026-06-03 20:23:58 MarkDuplicates Read 480,000,000 records. Elapsed time: 00:24:02s. Time for last 1,000,000: 2s. Last read position: chr17:50,193,947
INFO 2026-06-03 20:23:58 MarkDuplicates Tracking 175619 as yet unmatched pairs. 28509 records in RAM.
INFO 2026-06-03 20:24:00 MarkDuplicates Read 481,000,000 records. Elapsed time: 00:24:04s. Time for last 1,000,000: 2s. Last read position: chr17:50,195,563
INFO 2026-06-03 20:24:00 MarkDuplicates Tracking 172419 as yet unmatched pairs. 25309 records in RAM.
INFO 2026-06-03 20:24:03 MarkDuplicates Read 482,000,000 records. Elapsed time: 00:24:06s. Time for last 1,000,000: 2s. Last read position: chr17:50,197,744
INFO 2026-06-03 20:24:03 MarkDuplicates Tracking 175148 as yet unmatched pairs. 28037 records in RAM.
INFO 2026-06-03 20:24:05 MarkDuplicates Read 483,000,000 records. Elapsed time: 00:24:09s. Time for last 1,000,000: 2s. Last read position: chr17:50,468,258
INFO 2026-06-03 20:24:05 MarkDuplicates Tracking 164860 as yet unmatched pairs. 17749 records in RAM.
INFO 2026-06-03 20:24:07 MarkDuplicates Read 484,000,000 records. Elapsed time: 00:24:11s. Time for last 1,000,000: 2s. Last read position: chr17:58,357,591
INFO 2026-06-03 20:24:07 MarkDuplicates Tracking 163584 as yet unmatched pairs. 16470 records in RAM.
INFO 2026-06-03 20:24:10 MarkDuplicates Read 485,000,000 records. Elapsed time: 00:24:14s. Time for last 1,000,000: 2s. Last read position: chr17:59,838,387
INFO 2026-06-03 20:24:10 MarkDuplicates Tracking 162041 as yet unmatched pairs. 14927 records in RAM.
INFO 2026-06-03 20:24:13 MarkDuplicates Read 486,000,000 records. Elapsed time: 00:24:17s. Time for last 1,000,000: 2s. Last read position: chr17:64,499,973
INFO 2026-06-03 20:24:13 MarkDuplicates Tracking 161343 as yet unmatched pairs. 14227 records in RAM.
INFO 2026-06-03 20:24:15 MarkDuplicates Read 487,000,000 records. Elapsed time: 00:24:19s. Time for last 1,000,000: 2s. Last read position: chr17:68,395,150
INFO 2026-06-03 20:24:15 MarkDuplicates Tracking 159332 as yet unmatched pairs. 12215 records in RAM.
INFO 2026-06-03 20:24:17 MarkDuplicates Read 488,000,000 records. Elapsed time: 00:24:21s. Time for last 1,000,000: 2s. Last read position: chr17:75,103,969
INFO 2026-06-03 20:24:17 MarkDuplicates Tracking 157876 as yet unmatched pairs. 10757 records in RAM.
INFO 2026-06-03 20:24:19 MarkDuplicates Read 489,000,000 records. Elapsed time: 00:24:23s. Time for last 1,000,000: 2s. Last read position: chr17:75,730,913
INFO 2026-06-03 20:24:19 MarkDuplicates Tracking 156541 as yet unmatched pairs. 9422 records in RAM.
INFO 2026-06-03 20:24:22 MarkDuplicates Read 490,000,000 records. Elapsed time: 00:24:25s. Time for last 1,000,000: 2s. Last read position: chr17:76,478,739
INFO 2026-06-03 20:24:22 MarkDuplicates Tracking 154706 as yet unmatched pairs. 7586 records in RAM.
INFO 2026-06-03 20:24:24 MarkDuplicates Read 491,000,000 records. Elapsed time: 00:24:28s. Time for last 1,000,000: 2s. Last read position: chr17:78,973,012
INFO 2026-06-03 20:24:24 MarkDuplicates Tracking 153479 as yet unmatched pairs. 6356 records in RAM.
INFO 2026-06-03 20:24:26 MarkDuplicates Read 492,000,000 records. Elapsed time: 00:24:30s. Time for last 1,000,000: 2s. Last read position: chr17:81,085,709
INFO 2026-06-03 20:24:26 MarkDuplicates Tracking 151530 as yet unmatched pairs. 4407 records in RAM.
INFO 2026-06-03 20:24:28 MarkDuplicates Read 493,000,000 records. Elapsed time: 00:24:32s. Time for last 1,000,000: 2s. Last read position: chr17:81,846,474
INFO 2026-06-03 20:24:28 MarkDuplicates Tracking 150252 as yet unmatched pairs. 3126 records in RAM.
INFO 2026-06-03 20:24:30 MarkDuplicates Read 494,000,000 records. Elapsed time: 00:24:34s. Time for last 1,000,000: 2s. Last read position: chr17:82,194,128
INFO 2026-06-03 20:24:30 MarkDuplicates Tracking 148042 as yet unmatched pairs. 915 records in RAM.
INFO 2026-06-03 20:24:33 MarkDuplicates Read 495,000,000 records. Elapsed time: 00:24:37s. Time for last 1,000,000: 2s. Last read position: chr18:2,747,548
INFO 2026-06-03 20:24:33 MarkDuplicates Tracking 146605 as yet unmatched pairs. 11599 records in RAM.
INFO 2026-06-03 20:24:35 MarkDuplicates Read 496,000,000 records. Elapsed time: 00:24:39s. Time for last 1,000,000: 2s. Last read position: chr18:11,885,701
INFO 2026-06-03 20:24:35 MarkDuplicates Tracking 145216 as yet unmatched pairs. 10204 records in RAM.
INFO 2026-06-03 20:24:38 MarkDuplicates Read 497,000,000 records. Elapsed time: 00:24:42s. Time for last 1,000,000: 3s. Last read position: chr18:23,557,123
INFO 2026-06-03 20:24:38 MarkDuplicates Tracking 143830 as yet unmatched pairs. 8817 records in RAM.
INFO 2026-06-03 20:24:41 MarkDuplicates Read 498,000,000 records. Elapsed time: 00:24:45s. Time for last 1,000,000: 2s. Last read position: chr18:31,498,243
INFO 2026-06-03 20:24:41 MarkDuplicates Tracking 143269 as yet unmatched pairs. 8252 records in RAM.
INFO 2026-06-03 20:24:43 MarkDuplicates Read 499,000,000 records. Elapsed time: 00:24:47s. Time for last 1,000,000: 2s. Last read position: chr18:32,287,460
INFO 2026-06-03 20:24:43 MarkDuplicates Tracking 141395 as yet unmatched pairs. 6374 records in RAM.
INFO 2026-06-03 20:24:45 MarkDuplicates Read 500,000,000 records. Elapsed time: 00:24:49s. Time for last 1,000,000: 2s. Last read position: chr18:44,951,564
INFO 2026-06-03 20:24:45 MarkDuplicates Tracking 140018 as yet unmatched pairs. 4993 records in RAM.
INFO 2026-06-03 20:24:47 MarkDuplicates Read 501,000,000 records. Elapsed time: 00:24:51s. Time for last 1,000,000: 2s. Last read position: chr18:49,490,805
INFO 2026-06-03 20:24:47 MarkDuplicates Tracking 150361 as yet unmatched pairs. 15333 records in RAM.
INFO 2026-06-03 20:24:50 MarkDuplicates Read 502,000,000 records. Elapsed time: 00:24:54s. Time for last 1,000,000: 2s. Last read position: chr18:50,275,636
INFO 2026-06-03 20:24:50 MarkDuplicates Tracking 137886 as yet unmatched pairs. 2857 records in RAM.
INFO 2026-06-03 20:24:52 MarkDuplicates Read 503,000,000 records. Elapsed time: 00:24:56s. Time for last 1,000,000: 2s. Last read position: chr18:62,895,912
INFO 2026-06-03 20:24:52 MarkDuplicates Tracking 136032 as yet unmatched pairs. 1001 records in RAM.
INFO 2026-06-03 20:24:55 MarkDuplicates Read 504,000,000 records. Elapsed time: 00:24:59s. Time for last 1,000,000: 2s. Last read position: chr19:580,675
INFO 2026-06-03 20:24:55 MarkDuplicates Tracking 135178 as yet unmatched pairs. 58090 records in RAM.
INFO 2026-06-03 20:24:57 MarkDuplicates Read 505,000,000 records. Elapsed time: 00:25:01s. Time for last 1,000,000: 2s. Last read position: chr19:1,053,328
INFO 2026-06-03 20:24:57 MarkDuplicates Tracking 132924 as yet unmatched pairs. 55834 records in RAM.
INFO 2026-06-03 20:24:59 MarkDuplicates Read 506,000,000 records. Elapsed time: 00:25:03s. Time for last 1,000,000: 2s. Last read position: chr19:1,474,869
INFO 2026-06-03 20:24:59 MarkDuplicates Tracking 131229 as yet unmatched pairs. 54138 records in RAM.
INFO 2026-06-03 20:25:01 MarkDuplicates Read 507,000,000 records. Elapsed time: 00:25:05s. Time for last 1,000,000: 2s. Last read position: chr19:2,244,547
INFO 2026-06-03 20:25:01 MarkDuplicates Tracking 129624 as yet unmatched pairs. 52533 records in RAM.
INFO 2026-06-03 20:27:57 MarkDuplicates Read 508,000,000 records. Elapsed time: 00:28:01s. Time for last 1,000,000: 175s. Last read position: chr19:3,532,636
INFO 2026-06-03 20:27:57 MarkDuplicates Tracking 127723 as yet unmatched pairs. 50632 records in RAM.
INFO 2026-06-03 20:28:00 MarkDuplicates Read 509,000,000 records. Elapsed time: 00:28:04s. Time for last 1,000,000: 2s. Last read position: chr19:4,657,932
INFO 2026-06-03 20:28:00 MarkDuplicates Tracking 125963 as yet unmatched pairs. 48870 records in RAM.
INFO 2026-06-03 20:28:02 MarkDuplicates Read 510,000,000 records. Elapsed time: 00:28:06s. Time for last 1,000,000: 2s. Last read position: chr19:5,844,078
INFO 2026-06-03 20:28:02 MarkDuplicates Tracking 125113 as yet unmatched pairs. 48020 records in RAM.
INFO 2026-06-03 20:28:04 MarkDuplicates Read 511,000,000 records. Elapsed time: 00:28:08s. Time for last 1,000,000: 2s. Last read position: chr19:7,535,911
INFO 2026-06-03 20:28:04 MarkDuplicates Tracking 122770 as yet unmatched pairs. 45673 records in RAM.
INFO 2026-06-03 20:28:06 MarkDuplicates Read 512,000,000 records. Elapsed time: 00:28:10s. Time for last 1,000,000: 2s. Last read position: chr19:9,413,452
INFO 2026-06-03 20:28:06 MarkDuplicates Tracking 120985 as yet unmatched pairs. 43887 records in RAM.
INFO 2026-06-03 20:28:09 MarkDuplicates Read 513,000,000 records. Elapsed time: 00:28:13s. Time for last 1,000,000: 2s. Last read position: chr19:10,631,684
INFO 2026-06-03 20:28:09 MarkDuplicates Tracking 119365 as yet unmatched pairs. 42263 records in RAM.
INFO 2026-06-03 20:28:11 MarkDuplicates Read 514,000,000 records. Elapsed time: 00:28:15s. Time for last 1,000,000: 2s. Last read position: chr19:11,241,689
INFO 2026-06-03 20:28:11 MarkDuplicates Tracking 117838 as yet unmatched pairs. 40734 records in RAM.
INFO 2026-06-03 20:28:13 MarkDuplicates Read 515,000,000 records. Elapsed time: 00:28:17s. Time for last 1,000,000: 2s. Last read position: chr19:12,764,850
INFO 2026-06-03 20:28:13 MarkDuplicates Tracking 116544 as yet unmatched pairs. 39440 records in RAM.
INFO 2026-06-03 20:28:16 MarkDuplicates Read 516,000,000 records. Elapsed time: 00:28:19s. Time for last 1,000,000: 2s. Last read position: chr19:14,071,109
INFO 2026-06-03 20:28:16 MarkDuplicates Tracking 114661 as yet unmatched pairs. 37552 records in RAM.
INFO 2026-06-03 20:28:18 MarkDuplicates Read 517,000,000 records. Elapsed time: 00:28:21s. Time for last 1,000,000: 2s. Last read position: chr19:15,124,965
INFO 2026-06-03 20:28:18 MarkDuplicates Tracking 113192 as yet unmatched pairs. 36082 records in RAM.
INFO 2026-06-03 20:28:20 MarkDuplicates Read 518,000,000 records. Elapsed time: 00:28:24s. Time for last 1,000,000: 2s. Last read position: chr19:15,895,542
INFO 2026-06-03 20:28:20 MarkDuplicates Tracking 111463 as yet unmatched pairs. 34353 records in RAM.
INFO 2026-06-03 20:28:22 MarkDuplicates Read 519,000,000 records. Elapsed time: 00:28:26s. Time for last 1,000,000: 2s. Last read position: chr19:17,521,004
INFO 2026-06-03 20:28:22 MarkDuplicates Tracking 109787 as yet unmatched pairs. 32677 records in RAM.
INFO 2026-06-03 20:28:24 MarkDuplicates Read 520,000,000 records. Elapsed time: 00:28:28s. Time for last 1,000,000: 2s. Last read position: chr19:18,388,692
INFO 2026-06-03 20:28:24 MarkDuplicates Tracking 108785 as yet unmatched pairs. 31671 records in RAM.
INFO 2026-06-03 20:28:26 MarkDuplicates Read 521,000,000 records. Elapsed time: 00:28:30s. Time for last 1,000,000: 2s. Last read position: chr19:19,306,012
INFO 2026-06-03 20:28:26 MarkDuplicates Tracking 106351 as yet unmatched pairs. 29237 records in RAM.
INFO 2026-06-03 20:28:29 MarkDuplicates Read 522,000,000 records. Elapsed time: 00:28:33s. Time for last 1,000,000: 2s. Last read position: chr19:33,044,336
INFO 2026-06-03 20:28:29 MarkDuplicates Tracking 105061 as yet unmatched pairs. 27946 records in RAM.
INFO 2026-06-03 20:28:31 MarkDuplicates Read 523,000,000 records. Elapsed time: 00:28:35s. Time for last 1,000,000: 2s. Last read position: chr19:35,654,624
INFO 2026-06-03 20:28:31 MarkDuplicates Tracking 103981 as yet unmatched pairs. 26866 records in RAM.
INFO 2026-06-03 20:28:33 MarkDuplicates Read 524,000,000 records. Elapsed time: 00:28:37s. Time for last 1,000,000: 2s. Last read position: chr19:38,701,025
INFO 2026-06-03 20:28:33 MarkDuplicates Tracking 101745 as yet unmatched pairs. 24630 records in RAM.
INFO 2026-06-03 20:28:35 MarkDuplicates Read 525,000,000 records. Elapsed time: 00:28:39s. Time for last 1,000,000: 2s. Last read position: chr19:39,415,034
INFO 2026-06-03 20:28:35 MarkDuplicates Tracking 100228 as yet unmatched pairs. 23110 records in RAM.
INFO 2026-06-03 20:28:38 MarkDuplicates Read 526,000,000 records. Elapsed time: 00:28:42s. Time for last 1,000,000: 2s. Last read position: chr19:39,943,373
INFO 2026-06-03 20:28:38 MarkDuplicates Tracking 99149 as yet unmatched pairs. 22031 records in RAM.
INFO 2026-06-03 20:28:40 MarkDuplicates Read 527,000,000 records. Elapsed time: 00:28:44s. Time for last 1,000,000: 2s. Last read position: chr19:41,426,728
INFO 2026-06-03 20:28:40 MarkDuplicates Tracking 97415 as yet unmatched pairs. 20297 records in RAM.
INFO 2026-06-03 20:28:42 MarkDuplicates Read 528,000,000 records. Elapsed time: 00:28:46s. Time for last 1,000,000: 2s. Last read position: chr19:41,727,260
INFO 2026-06-03 20:28:42 MarkDuplicates Tracking 98430 as yet unmatched pairs. 21311 records in RAM.
INFO 2026-06-03 20:28:44 MarkDuplicates Read 529,000,000 records. Elapsed time: 00:28:48s. Time for last 1,000,000: 2s. Last read position: chr19:42,295,068
INFO 2026-06-03 20:28:44 MarkDuplicates Tracking 94831 as yet unmatched pairs. 17711 records in RAM.
INFO 2026-06-03 20:28:46 MarkDuplicates Read 530,000,000 records. Elapsed time: 00:28:50s. Time for last 1,000,000: 2s. Last read position: chr19:45,396,852
INFO 2026-06-03 20:28:46 MarkDuplicates Tracking 93033 as yet unmatched pairs. 15900 records in RAM.
INFO 2026-06-03 20:28:49 MarkDuplicates Read 531,000,000 records. Elapsed time: 00:28:52s. Time for last 1,000,000: 2s. Last read position: chr19:47,143,579
INFO 2026-06-03 20:28:49 MarkDuplicates Tracking 91317 as yet unmatched pairs. 14181 records in RAM.
INFO 2026-06-03 20:28:51 MarkDuplicates Read 532,000,000 records. Elapsed time: 00:28:55s. Time for last 1,000,000: 2s. Last read position: chr19:48,873,964
INFO 2026-06-03 20:28:51 MarkDuplicates Tracking 89696 as yet unmatched pairs. 12560 records in RAM.
INFO 2026-06-03 20:28:54 MarkDuplicates Read 533,000,000 records. Elapsed time: 00:28:58s. Time for last 1,000,000: 2s. Last read position: chr19:49,636,668
INFO 2026-06-03 20:28:54 MarkDuplicates Tracking 88024 as yet unmatched pairs. 10888 records in RAM.
INFO 2026-06-03 20:28:56 MarkDuplicates Read 534,000,000 records. Elapsed time: 00:29:00s. Time for last 1,000,000: 2s. Last read position: chr19:50,820,297
INFO 2026-06-03 20:28:56 MarkDuplicates Tracking 86155 as yet unmatched pairs. 9019 records in RAM.
INFO 2026-06-03 20:28:58 MarkDuplicates Read 535,000,000 records. Elapsed time: 00:29:02s. Time for last 1,000,000: 1s. Last read position: chr19:52,888,126
INFO 2026-06-03 20:28:58 MarkDuplicates Tracking 85191 as yet unmatched pairs. 8055 records in RAM.
INFO 2026-06-03 20:29:00 MarkDuplicates Read 536,000,000 records. Elapsed time: 00:29:04s. Time for last 1,000,000: 1s. Last read position: chr19:54,361,190
INFO 2026-06-03 20:29:00 MarkDuplicates Tracking 83432 as yet unmatched pairs. 6296 records in RAM.
INFO 2026-06-03 20:29:03 MarkDuplicates Read 537,000,000 records. Elapsed time: 00:29:07s. Time for last 1,000,000: 2s. Last read position: chr19:55,203,900
INFO 2026-06-03 20:29:03 MarkDuplicates Tracking 82223 as yet unmatched pairs. 5084 records in RAM.
INFO 2026-06-03 20:29:05 MarkDuplicates Read 538,000,000 records. Elapsed time: 00:29:09s. Time for last 1,000,000: 2s. Last read position: chr19:55,669,459
INFO 2026-06-03 20:29:05 MarkDuplicates Tracking 80129 as yet unmatched pairs. 2985 records in RAM.
INFO 2026-06-03 20:29:07 MarkDuplicates Read 539,000,000 records. Elapsed time: 00:29:11s. Time for last 1,000,000: 1s. Last read position: chr19:57,876,916
INFO 2026-06-03 20:29:07 MarkDuplicates Tracking 78823 as yet unmatched pairs. 1677 records in RAM.
INFO 2026-06-03 20:29:10 MarkDuplicates Read 540,000,000 records. Elapsed time: 00:29:14s. Time for last 1,000,000: 2s. Last read position: chr20:419,448
INFO 2026-06-03 20:29:10 MarkDuplicates Tracking 77073 as yet unmatched pairs. 19507 records in RAM.
INFO 2026-06-03 20:29:12 MarkDuplicates Read 541,000,000 records. Elapsed time: 00:29:16s. Time for last 1,000,000: 2s. Last read position: chr20:2,864,256
INFO 2026-06-03 20:29:12 MarkDuplicates Tracking 75536 as yet unmatched pairs. 17964 records in RAM.
INFO 2026-06-03 20:29:14 MarkDuplicates Read 542,000,000 records. Elapsed time: 00:29:18s. Time for last 1,000,000: 2s. Last read position: chr20:5,580,007
INFO 2026-06-03 20:29:14 MarkDuplicates Tracking 74143 as yet unmatched pairs. 16570 records in RAM.
INFO 2026-06-03 20:29:17 MarkDuplicates Read 543,000,000 records. Elapsed time: 00:29:20s. Time for last 1,000,000: 2s. Last read position: chr20:17,641,833
INFO 2026-06-03 20:29:17 MarkDuplicates Tracking 73246 as yet unmatched pairs. 15672 records in RAM.
INFO 2026-06-03 20:29:19 MarkDuplicates Read 544,000,000 records. Elapsed time: 00:29:23s. Time for last 1,000,000: 2s. Last read position: chr20:20,573,034
INFO 2026-06-03 20:29:19 MarkDuplicates Tracking 71416 as yet unmatched pairs. 13841 records in RAM.
INFO 2026-06-03 20:29:22 MarkDuplicates Read 545,000,000 records. Elapsed time: 00:29:26s. Time for last 1,000,000: 3s. Last read position: chr20:31,554,756
INFO 2026-06-03 20:29:22 MarkDuplicates Tracking 70170 as yet unmatched pairs. 12595 records in RAM.
INFO 2026-06-03 20:29:25 MarkDuplicates Read 546,000,000 records. Elapsed time: 00:29:29s. Time for last 1,000,000: 2s. Last read position: chr20:34,749,820
INFO 2026-06-03 20:29:25 MarkDuplicates Tracking 68522 as yet unmatched pairs. 10946 records in RAM.
INFO 2026-06-03 20:29:27 MarkDuplicates Read 547,000,000 records. Elapsed time: 00:29:31s. Time for last 1,000,000: 2s. Last read position: chr20:36,526,920
INFO 2026-06-03 20:29:27 MarkDuplicates Tracking 67041 as yet unmatched pairs. 9465 records in RAM.
INFO 2026-06-03 20:29:29 MarkDuplicates Read 548,000,000 records. Elapsed time: 00:29:33s. Time for last 1,000,000: 2s. Last read position: chr20:43,459,796
INFO 2026-06-03 20:29:29 MarkDuplicates Tracking 65917 as yet unmatched pairs. 8338 records in RAM.
INFO 2026-06-03 20:29:32 MarkDuplicates Read 549,000,000 records. Elapsed time: 00:29:36s. Time for last 1,000,000: 2s. Last read position: chr20:45,909,575
INFO 2026-06-03 20:29:32 MarkDuplicates Tracking 64269 as yet unmatched pairs. 6690 records in RAM.
INFO 2026-06-03 20:29:34 MarkDuplicates Read 550,000,000 records. Elapsed time: 00:29:38s. Time for last 1,000,000: 2s. Last read position: chr20:49,936,431
INFO 2026-06-03 20:29:34 MarkDuplicates Tracking 62834 as yet unmatched pairs. 5254 records in RAM.
INFO 2026-06-03 20:29:36 MarkDuplicates Read 551,000,000 records. Elapsed time: 00:29:40s. Time for last 1,000,000: 2s. Last read position: chr20:58,667,550
INFO 2026-06-03 20:29:36 MarkDuplicates Tracking 61852 as yet unmatched pairs. 4272 records in RAM.
INFO 2026-06-03 20:29:38 MarkDuplicates Read 552,000,000 records. Elapsed time: 00:29:42s. Time for last 1,000,000: 2s. Last read position: chr20:62,656,982
INFO 2026-06-03 20:29:38 MarkDuplicates Tracking 59991 as yet unmatched pairs. 2408 records in RAM.
INFO 2026-06-03 20:29:40 MarkDuplicates Read 553,000,000 records. Elapsed time: 00:29:44s. Time for last 1,000,000: 1s. Last read position: chr20:63,738,335
INFO 2026-06-03 20:29:40 MarkDuplicates Tracking 58149 as yet unmatched pairs. 564 records in RAM.
INFO 2026-06-03 20:29:42 MarkDuplicates Read 554,000,000 records. Elapsed time: 00:29:46s. Time for last 1,000,000: 1s. Last read position: chr21:8,217,308
INFO 2026-06-03 20:29:42 MarkDuplicates Tracking 56479 as yet unmatched pairs. 8560 records in RAM.
INFO 2026-06-03 20:29:44 MarkDuplicates Read 555,000,000 records. Elapsed time: 00:29:48s. Time for last 1,000,000: 2s. Last read position: chr21:8,441,947
INFO 2026-06-03 20:29:44 MarkDuplicates Tracking 55891 as yet unmatched pairs. 7968 records in RAM.
INFO 2026-06-03 20:29:46 MarkDuplicates Read 556,000,000 records. Elapsed time: 00:29:50s. Time for last 1,000,000: 2s. Last read position: chr21:29,056,462
INFO 2026-06-03 20:29:46 MarkDuplicates Tracking 54949 as yet unmatched pairs. 7026 records in RAM.
INFO 2026-06-03 20:29:49 MarkDuplicates Read 557,000,000 records. Elapsed time: 00:29:53s. Time for last 1,000,000: 3s. Last read position: chr21:36,208,804
INFO 2026-06-03 20:29:49 MarkDuplicates Tracking 53316 as yet unmatched pairs. 5393 records in RAM.
INFO 2026-06-03 20:29:51 MarkDuplicates Read 558,000,000 records. Elapsed time: 00:29:55s. Time for last 1,000,000: 2s. Last read position: chr21:41,901,638
INFO 2026-06-03 20:29:51 MarkDuplicates Tracking 51597 as yet unmatched pairs. 3671 records in RAM.
INFO 2026-06-03 20:29:53 MarkDuplicates Read 559,000,000 records. Elapsed time: 00:29:57s. Time for last 1,000,000: 2s. Last read position: chr21:44,423,651
INFO 2026-06-03 20:29:53 MarkDuplicates Tracking 50093 as yet unmatched pairs. 2164 records in RAM.
INFO 2026-06-03 20:29:56 MarkDuplicates Read 560,000,000 records. Elapsed time: 00:29:59s. Time for last 1,000,000: 2s. Last read position: chr21:46,284,999
INFO 2026-06-03 20:29:56 MarkDuplicates Tracking 48365 as yet unmatched pairs. 436 records in RAM.
INFO 2026-06-03 20:29:58 MarkDuplicates Read 561,000,000 records. Elapsed time: 00:30:02s. Time for last 1,000,000: 2s. Last read position: chr22:20,668,106
INFO 2026-06-03 20:29:58 MarkDuplicates Tracking 46707 as yet unmatched pairs. 14760 records in RAM.
INFO 2026-06-03 20:30:00 MarkDuplicates Read 562,000,000 records. Elapsed time: 00:30:04s. Time for last 1,000,000: 2s. Last read position: chr22:23,800,972
INFO 2026-06-03 20:30:00 MarkDuplicates Tracking 45158 as yet unmatched pairs. 13211 records in RAM.
INFO 2026-06-03 20:30:02 MarkDuplicates Read 563,000,000 records. Elapsed time: 00:30:06s. Time for last 1,000,000: 1s. Last read position: chr22:29,282,478
INFO 2026-06-03 20:30:02 MarkDuplicates Tracking 45016 as yet unmatched pairs. 13069 records in RAM.
INFO 2026-06-03 20:30:04 MarkDuplicates Read 564,000,000 records. Elapsed time: 00:30:08s. Time for last 1,000,000: 2s. Last read position: chr22:30,935,098
INFO 2026-06-03 20:30:04 MarkDuplicates Tracking 42099 as yet unmatched pairs. 10152 records in RAM.
INFO 2026-06-03 20:30:07 MarkDuplicates Read 565,000,000 records. Elapsed time: 00:30:10s. Time for last 1,000,000: 2s. Last read position: chr22:36,289,235
INFO 2026-06-03 20:30:07 MarkDuplicates Tracking 40548 as yet unmatched pairs. 8601 records in RAM.
INFO 2026-06-03 20:30:09 MarkDuplicates Read 566,000,000 records. Elapsed time: 00:30:12s. Time for last 1,000,000: 2s. Last read position: chr22:37,838,500
INFO 2026-06-03 20:30:09 MarkDuplicates Tracking 38899 as yet unmatched pairs. 6951 records in RAM.
INFO 2026-06-03 20:30:12 MarkDuplicates Read 567,000,000 records. Elapsed time: 00:30:15s. Time for last 1,000,000: 3s. Last read position: chr22:39,521,812
INFO 2026-06-03 20:30:12 MarkDuplicates Tracking 37963 as yet unmatched pairs. 6015 records in RAM.
INFO 2026-06-03 20:30:14 MarkDuplicates Read 568,000,000 records. Elapsed time: 00:30:18s. Time for last 1,000,000: 2s. Last read position: chr22:41,663,680
INFO 2026-06-03 20:30:14 MarkDuplicates Tracking 36009 as yet unmatched pairs. 4059 records in RAM.
INFO 2026-06-03 20:30:17 MarkDuplicates Read 569,000,000 records. Elapsed time: 00:30:21s. Time for last 1,000,000: 2s. Last read position: chr22:46,287,134
INFO 2026-06-03 20:30:17 MarkDuplicates Tracking 34531 as yet unmatched pairs. 2580 records in RAM.
INFO 2026-06-03 20:30:19 MarkDuplicates Read 570,000,000 records. Elapsed time: 00:30:23s. Time for last 1,000,000: 2s. Last read position: chr22:50,462,002
INFO 2026-06-03 20:30:19 MarkDuplicates Tracking 32789 as yet unmatched pairs. 838 records in RAM.
INFO 2026-06-03 20:30:21 MarkDuplicates Read 571,000,000 records. Elapsed time: 00:30:25s. Time for last 1,000,000: 2s. Last read position: chrX:3,311,038
INFO 2026-06-03 20:30:21 MarkDuplicates Tracking 31030 as yet unmatched pairs. 27073 records in RAM.
INFO 2026-06-03 20:30:24 MarkDuplicates Read 572,000,000 records. Elapsed time: 00:30:28s. Time for last 1,000,000: 2s. Last read position: chrX:17,801,935
INFO 2026-06-03 20:30:24 MarkDuplicates Tracking 29692 as yet unmatched pairs. 25728 records in RAM.
INFO 2026-06-03 20:30:26 MarkDuplicates Read 573,000,000 records. Elapsed time: 00:30:30s. Time for last 1,000,000: 2s. Last read position: chrX:30,694,524
INFO 2026-06-03 20:30:26 MarkDuplicates Tracking 28661 as yet unmatched pairs. 24696 records in RAM.
INFO 2026-06-03 20:30:28 MarkDuplicates Read 574,000,000 records. Elapsed time: 00:30:32s. Time for last 1,000,000: 2s. Last read position: chrX:41,345,306
INFO 2026-06-03 20:30:28 MarkDuplicates Tracking 27661 as yet unmatched pairs. 23696 records in RAM.
INFO 2026-06-03 20:30:31 MarkDuplicates Read 575,000,000 records. Elapsed time: 00:30:34s. Time for last 1,000,000: 2s. Last read position: chrX:47,228,857
INFO 2026-06-03 20:30:31 MarkDuplicates Tracking 25648 as yet unmatched pairs. 21682 records in RAM.
INFO 2026-06-03 20:30:33 MarkDuplicates Read 576,000,000 records. Elapsed time: 00:30:37s. Time for last 1,000,000: 2s. Last read position: chrX:49,075,924
INFO 2026-06-03 20:30:33 MarkDuplicates Tracking 24322 as yet unmatched pairs. 20356 records in RAM.
INFO 2026-06-03 20:30:35 MarkDuplicates Read 577,000,000 records. Elapsed time: 00:30:39s. Time for last 1,000,000: 2s. Last read position: chrX:53,551,078
INFO 2026-06-03 20:30:35 MarkDuplicates Tracking 23112 as yet unmatched pairs. 19145 records in RAM.
INFO 2026-06-03 20:30:38 MarkDuplicates Read 578,000,000 records. Elapsed time: 00:30:42s. Time for last 1,000,000: 3s. Last read position: chrX:68,838,713
INFO 2026-06-03 20:30:38 MarkDuplicates Tracking 21492 as yet unmatched pairs. 17525 records in RAM.
INFO 2026-06-03 20:30:41 MarkDuplicates Read 579,000,000 records. Elapsed time: 00:30:44s. Time for last 1,000,000: 2s. Last read position: chrX:72,208,286
INFO 2026-06-03 20:30:41 MarkDuplicates Tracking 20209 as yet unmatched pairs. 16242 records in RAM.
INFO 2026-06-03 20:30:43 MarkDuplicates Read 580,000,000 records. Elapsed time: 00:30:47s. Time for last 1,000,000: 2s. Last read position: chrX:77,682,421
INFO 2026-06-03 20:30:43 MarkDuplicates Tracking 19570 as yet unmatched pairs. 15603 records in RAM.
INFO 2026-06-03 20:30:45 MarkDuplicates Read 581,000,000 records. Elapsed time: 00:30:49s. Time for last 1,000,000: 2s. Last read position: chrX:85,345,781
INFO 2026-06-03 20:30:45 MarkDuplicates Tracking 18090 as yet unmatched pairs. 14123 records in RAM.
INFO 2026-06-03 20:30:47 MarkDuplicates Read 582,000,000 records. Elapsed time: 00:30:51s. Time for last 1,000,000: 1s. Last read position: chrX:101,398,881
INFO 2026-06-03 20:30:47 MarkDuplicates Tracking 16655 as yet unmatched pairs. 12688 records in RAM.
INFO 2026-06-03 20:30:50 MarkDuplicates Read 583,000,000 records. Elapsed time: 00:30:54s. Time for last 1,000,000: 2s. Last read position: chrX:109,542,534
INFO 2026-06-03 20:30:50 MarkDuplicates Tracking 15380 as yet unmatched pairs. 11413 records in RAM.
INFO 2026-06-03 20:30:52 MarkDuplicates Read 584,000,000 records. Elapsed time: 00:30:56s. Time for last 1,000,000: 2s. Last read position: chrX:119,590,710
INFO 2026-06-03 20:30:52 MarkDuplicates Tracking 13739 as yet unmatched pairs. 9771 records in RAM.
INFO 2026-06-03 20:30:54 MarkDuplicates Read 585,000,000 records. Elapsed time: 00:30:58s. Time for last 1,000,000: 2s. Last read position: chrX:124,077,988
INFO 2026-06-03 20:30:54 MarkDuplicates Tracking 12843 as yet unmatched pairs. 8875 records in RAM.
INFO 2026-06-03 20:30:56 MarkDuplicates Read 586,000,000 records. Elapsed time: 00:31:00s. Time for last 1,000,000: 2s. Last read position: chrX:134,807,311
INFO 2026-06-03 20:30:56 MarkDuplicates Tracking 11237 as yet unmatched pairs. 7269 records in RAM.
INFO 2026-06-03 20:30:58 MarkDuplicates Read 587,000,000 records. Elapsed time: 00:31:02s. Time for last 1,000,000: 1s. Last read position: chrX:152,827,854
INFO 2026-06-03 20:30:58 MarkDuplicates Tracking 10103 as yet unmatched pairs. 6132 records in RAM.
INFO 2026-06-03 20:31:01 MarkDuplicates Read 588,000,000 records. Elapsed time: 00:31:04s. Time for last 1,000,000: 2s. Last read position: chrX:153,920,704
INFO 2026-06-03 20:31:01 MarkDuplicates Tracking 8604 as yet unmatched pairs. 4633 records in RAM.
INFO 2026-06-03 20:31:03 MarkDuplicates Read 589,000,000 records. Elapsed time: 00:31:07s. Time for last 1,000,000: 2s. Last read position: chrX:154,360,493
INFO 2026-06-03 20:31:03 MarkDuplicates Tracking 6688 as yet unmatched pairs. 2717 records in RAM.
INFO 2026-06-03 20:31:06 MarkDuplicates Read 590,000,000 records. Elapsed time: 00:31:09s. Time for last 1,000,000: 2s. Last read position: chrX:154,487,466
INFO 2026-06-03 20:31:06 MarkDuplicates Tracking 5015 as yet unmatched pairs. 1044 records in RAM.
INFO 2026-06-03 20:31:08 MarkDuplicates Read 591,000,000 records. Elapsed time: 00:31:12s. Time for last 1,000,000: 2s. Last read position: chrM:7,188
INFO 2026-06-03 20:31:08 MarkDuplicates Tracking 3924 as yet unmatched pairs. 322 records in RAM.
INFO 2026-06-03 20:31:09 MarkDuplicates Read 592,000,000 records. Elapsed time: 00:31:13s. Time for last 1,000,000: 1s. Last read position: GL000220.1:158,150
INFO 2026-06-03 20:31:09 MarkDuplicates Tracking 2452 as yet unmatched pairs. 64 records in RAM.
INFO 2026-06-03 20:31:11 MarkDuplicates Read 593,000,000 records. Elapsed time: 00:31:15s. Time for last 1,000,000: 1s. Last read position: KI270733.1:133,663
INFO 2026-06-03 20:31:11 MarkDuplicates Tracking 569 as yet unmatched pairs. 549 records in RAM.
INFO 2026-06-03 20:31:12 MarkDuplicates Read 593753377 records. 0 pairs never matched.
INFO 2026-06-03 20:31:52 MarkDuplicates After buildSortedReadEndLists freeMemory: 204140176; totalMemory: 234881024; maxMemory: 63585648640
INFO 2026-06-03 20:31:52 MarkDuplicates Will retain up to 1987051520 duplicate indices before spilling to disk.
INFO 2026-06-03 20:31:57 MarkDuplicates Traversing read pair information and detecting duplicates.
WARNING 2026-06-03 20:31:57 SortingCollection There is not enough memory per file for buffering. Reading will be unbuffered.
INFO 2026-06-03 20:33:09 OpticalDuplicateFinder Large duplicate set. size = 1256
INFO 2026-06-03 20:33:09 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:11,873
INFO 2026-06-03 20:33:44 MarkDuplicates Traversing fragment information and detecting duplicates.
WARNING 2026-06-03 20:33:44 SortingCollection There is not enough memory per file for buffering. Reading will be unbuffered.
INFO 2026-06-03 20:35:10 MarkDuplicates Sorting list of duplicate records.
INFO 2026-06-03 20:35:12 MarkDuplicates After generateDuplicateIndexes freeMemory: 203995672; totalMemory: 234881024; maxMemory: 63585648640
INFO 2026-06-03 20:35:12 MarkDuplicates Marking 293228924 records as duplicates.
INFO 2026-06-03 20:35:12 MarkDuplicates Found 12669465 optical duplicate clusters.
INFO 2026-06-03 20:35:12 MarkDuplicates Reads are assumed to be ordered by: coordinate
INFO 2026-06-03 20:35:31 MarkDuplicates Written 10,000,000 records. Elapsed time: 00:00:19s. Time for last 10,000,000: 19s. Last read position: chr1:19,074,844
INFO 2026-06-03 20:35:50 MarkDuplicates Written 20,000,000 records. Elapsed time: 00:00:38s. Time for last 10,000,000: 18s. Last read position: chr1:34,992,294
INFO 2026-06-03 20:36:09 MarkDuplicates Written 30,000,000 records. Elapsed time: 00:00:56s. Time for last 10,000,000: 18s. Last read position: chr1:108,992,692
INFO 2026-06-03 20:36:27 MarkDuplicates Written 40,000,000 records. Elapsed time: 00:01:15s. Time for last 10,000,000: 18s. Last read position: chr1:153,614,917
INFO 2026-06-03 20:36:45 MarkDuplicates Written 50,000,000 records. Elapsed time: 00:01:33s. Time for last 10,000,000: 18s. Last read position: chr1:169,525,905
INFO 2026-06-03 20:37:04 MarkDuplicates Written 60,000,000 records. Elapsed time: 00:01:51s. Time for last 10,000,000: 18s. Last read position: chr1:209,618,532
INFO 2026-06-03 20:37:22 MarkDuplicates Written 70,000,000 records. Elapsed time: 00:02:10s. Time for last 10,000,000: 18s. Last read position: chr2:26,375,044
INFO 2026-06-03 20:37:41 MarkDuplicates Written 80,000,000 records. Elapsed time: 00:02:29s. Time for last 10,000,000: 18s. Last read position: chr2:65,313,651
INFO 2026-06-03 20:38:00 MarkDuplicates Written 90,000,000 records. Elapsed time: 00:02:47s. Time for last 10,000,000: 18s. Last read position: chr2:108,719,676
INFO 2026-06-03 20:38:18 MarkDuplicates Written 100,000,000 records. Elapsed time: 00:03:06s. Time for last 10,000,000: 18s. Last read position: chr2:190,982,389
INFO 2026-06-03 20:38:37 MarkDuplicates Written 110,000,000 records. Elapsed time: 00:03:24s. Time for last 10,000,000: 18s. Last read position: chr3:4,376,335
INFO 2026-06-03 20:38:55 MarkDuplicates Written 120,000,000 records. Elapsed time: 00:03:43s. Time for last 10,000,000: 18s. Last read position: chr3:58,149,901
INFO 2026-06-03 20:39:16 MarkDuplicates Written 130,000,000 records. Elapsed time: 00:04:04s. Time for last 10,000,000: 21s. Last read position: chr3:170,129,236
INFO 2026-06-03 20:39:37 MarkDuplicates Written 140,000,000 records. Elapsed time: 00:04:25s. Time for last 10,000,000: 20s. Last read position: chr4:37,590,313
INFO 2026-06-03 20:39:59 MarkDuplicates Written 150,000,000 records. Elapsed time: 00:04:46s. Time for last 10,000,000: 21s. Last read position: chr4:177,310,034
INFO 2026-06-03 20:40:21 MarkDuplicates Written 160,000,000 records. Elapsed time: 00:05:09s. Time for last 10,000,000: 22s. Last read position: chr5:79,641,122
INFO 2026-06-03 20:40:42 MarkDuplicates Written 170,000,000 records. Elapsed time: 00:05:30s. Time for last 10,000,000: 20s. Last read position: chr5:159,168,872
INFO 2026-06-03 20:41:01 MarkDuplicates Written 180,000,000 records. Elapsed time: 00:05:49s. Time for last 10,000,000: 19s. Last read position: chr6:30,897,399
INFO 2026-06-03 20:41:20 MarkDuplicates Written 190,000,000 records. Elapsed time: 00:06:08s. Time for last 10,000,000: 19s. Last read position: chr6:78,998,287
INFO 2026-06-03 20:41:40 MarkDuplicates Written 200,000,000 records. Elapsed time: 00:06:27s. Time for last 10,000,000: 19s. Last read position: chr6:169,225,225
INFO 2026-06-03 20:41:59 MarkDuplicates Written 210,000,000 records. Elapsed time: 00:06:46s. Time for last 10,000,000: 19s. Last read position: chr7:73,831,177
INFO 2026-06-03 20:42:17 MarkDuplicates Written 220,000,000 records. Elapsed time: 00:07:05s. Time for last 10,000,000: 18s. Last read position: chr7:100,998,805
INFO 2026-06-03 20:42:36 MarkDuplicates Written 230,000,000 records. Elapsed time: 00:07:24s. Time for last 10,000,000: 18s. Last read position: chr7:151,081,808
INFO 2026-06-03 20:42:55 MarkDuplicates Written 240,000,000 records. Elapsed time: 00:07:43s. Time for last 10,000,000: 18s. Last read position: chr8:61,681,004
INFO 2026-06-03 20:43:14 MarkDuplicates Written 250,000,000 records. Elapsed time: 00:08:02s. Time for last 10,000,000: 19s. Last read position: chr8:143,858,228
INFO 2026-06-03 20:43:32 MarkDuplicates Written 260,000,000 records. Elapsed time: 00:08:20s. Time for last 10,000,000: 17s. Last read position: chr8:143,916,635
INFO 2026-06-03 20:43:51 MarkDuplicates Written 270,000,000 records. Elapsed time: 00:08:38s. Time for last 10,000,000: 18s. Last read position: chr9:36,581,713
INFO 2026-06-03 20:44:10 MarkDuplicates Written 280,000,000 records. Elapsed time: 00:08:57s. Time for last 10,000,000: 18s. Last read position: chr9:110,244,178
INFO 2026-06-03 20:44:29 MarkDuplicates Written 290,000,000 records. Elapsed time: 00:09:16s. Time for last 10,000,000: 18s. Last read position: chr9:131,150,645
INFO 2026-06-03 20:44:47 MarkDuplicates Written 300,000,000 records. Elapsed time: 00:09:35s. Time for last 10,000,000: 18s. Last read position: chr10:16,754,967
INFO 2026-06-03 20:45:06 MarkDuplicates Written 310,000,000 records. Elapsed time: 00:09:54s. Time for last 10,000,000: 18s. Last read position: chr10:103,603,098
INFO 2026-06-03 20:45:25 MarkDuplicates Written 320,000,000 records. Elapsed time: 00:10:13s. Time for last 10,000,000: 18s. Last read position: chr11:18,616,933
INFO 2026-06-03 20:45:44 MarkDuplicates Written 330,000,000 records. Elapsed time: 00:10:31s. Time for last 10,000,000: 18s. Last read position: chr11:65,573,565
INFO 2026-06-03 20:46:03 MarkDuplicates Written 340,000,000 records. Elapsed time: 00:10:50s. Time for last 10,000,000: 18s. Last read position: chr11:118,900,002
INFO 2026-06-03 20:46:21 MarkDuplicates Written 350,000,000 records. Elapsed time: 00:11:09s. Time for last 10,000,000: 18s. Last read position: chr12:46,204,587
INFO 2026-06-03 20:46:40 MarkDuplicates Written 360,000,000 records. Elapsed time: 00:11:27s. Time for last 10,000,000: 18s. Last read position: chr12:57,098,513
INFO 2026-06-03 20:46:58 MarkDuplicates Written 370,000,000 records. Elapsed time: 00:11:46s. Time for last 10,000,000: 18s. Last read position: chr12:120,197,399
INFO 2026-06-03 20:47:17 MarkDuplicates Written 380,000,000 records. Elapsed time: 00:12:04s. Time for last 10,000,000: 18s. Last read position: chr13:95,867,412
INFO 2026-06-03 20:47:35 MarkDuplicates Written 390,000,000 records. Elapsed time: 00:12:23s. Time for last 10,000,000: 18s. Last read position: chr14:54,481,434
INFO 2026-06-03 20:47:54 MarkDuplicates Written 400,000,000 records. Elapsed time: 00:12:42s. Time for last 10,000,000: 18s. Last read position: chr15:28,237,027
INFO 2026-06-03 20:48:12 MarkDuplicates Written 410,000,000 records. Elapsed time: 00:13:00s. Time for last 10,000,000: 18s. Last read position: chr15:50,228,979
INFO 2026-06-03 20:48:31 MarkDuplicates Written 420,000,000 records. Elapsed time: 00:13:19s. Time for last 10,000,000: 18s. Last read position: chr15:82,989,899
INFO 2026-06-03 20:48:51 MarkDuplicates Written 430,000,000 records. Elapsed time: 00:13:39s. Time for last 10,000,000: 19s. Last read position: chr16:12,568,541
INFO 2026-06-03 20:49:10 MarkDuplicates Written 440,000,000 records. Elapsed time: 00:13:57s. Time for last 10,000,000: 18s. Last read position: chr16:29,484,961
INFO 2026-06-03 20:49:28 MarkDuplicates Written 450,000,000 records. Elapsed time: 00:14:16s. Time for last 10,000,000: 18s. Last read position: chr16:69,931,565
INFO 2026-06-03 20:49:47 MarkDuplicates Written 460,000,000 records. Elapsed time: 00:14:34s. Time for last 10,000,000: 18s. Last read position: chr17:4,716,182
INFO 2026-06-03 20:50:05 MarkDuplicates Written 470,000,000 records. Elapsed time: 00:14:53s. Time for last 10,000,000: 18s. Last read position: chr17:38,729,501
INFO 2026-06-03 20:50:23 MarkDuplicates Written 480,000,000 records. Elapsed time: 00:15:11s. Time for last 10,000,000: 18s. Last read position: chr17:50,193,947
INFO 2026-06-03 20:50:42 MarkDuplicates Written 490,000,000 records. Elapsed time: 00:15:29s. Time for last 10,000,000: 18s. Last read position: chr17:76,478,739
INFO 2026-06-03 20:51:00 MarkDuplicates Written 500,000,000 records. Elapsed time: 00:15:48s. Time for last 10,000,000: 18s. Last read position: chr18:44,951,564
INFO 2026-06-03 20:51:18 MarkDuplicates Written 510,000,000 records. Elapsed time: 00:16:06s. Time for last 10,000,000: 18s. Last read position: chr19:5,844,078
INFO 2026-06-03 20:51:36 MarkDuplicates Written 520,000,000 records. Elapsed time: 00:16:24s. Time for last 10,000,000: 18s. Last read position: chr19:18,388,692
INFO 2026-06-03 20:51:54 MarkDuplicates Written 530,000,000 records. Elapsed time: 00:16:42s. Time for last 10,000,000: 18s. Last read position: chr19:45,396,852
INFO 2026-06-03 20:52:12 MarkDuplicates Written 540,000,000 records. Elapsed time: 00:17:00s. Time for last 10,000,000: 18s. Last read position: chr20:419,448
INFO 2026-06-03 20:52:31 MarkDuplicates Written 550,000,000 records. Elapsed time: 00:17:18s. Time for last 10,000,000: 18s. Last read position: chr20:49,936,431
INFO 2026-06-03 20:52:49 MarkDuplicates Written 560,000,000 records. Elapsed time: 00:17:36s. Time for last 10,000,000: 17s. Last read position: chr21:46,284,999