File Info

Filename
fi_workdir/Log.final.out
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/f6/77c697bbce9ae472954a11f1425ed8/fi_workdir/Log.final.out
Size
2.0 KB
Attempt
                                 Started job on |	Jun 03 21:08:32
                             Started mapping on |	Jun 03 21:15:08
                                    Finished on |	Jun 03 22:37:34
       Mapping speed, Million of reads per hour |	215.66

                          Number of input reads |	296287281
                      Average input read length |	239
                                    UNIQUE READS:
                   Uniquely mapped reads number |	285986790
                        Uniquely mapped reads % |	96.52%
                          Average mapped length |	238.77
                       Number of splices: Total |	304545968
            Number of splices: Annotated (sjdb) |	300388927
                       Number of splices: GT/AG |	301306613
                       Number of splices: GC/AG |	1840687
                       Number of splices: AT/AC |	192635
               Number of splices: Non-canonical |	1206033
                      Mismatch rate per base, % |	0.26%
                         Deletion rate per base |	0.02%
                        Deletion average length |	2.02
                        Insertion rate per base |	0.00%
                       Insertion average length |	1.67
                             MULTI-MAPPING READS:
        Number of reads mapped to multiple loci |	7448246
             % of reads mapped to multiple loci |	2.51%
        Number of reads mapped to too many loci |	349594
             % of reads mapped to too many loci |	0.12%
                                  UNMAPPED READS:
  Number of reads unmapped: too many mismatches |	0
       % of reads unmapped: too many mismatches |	0.00%
            Number of reads unmapped: too short |	2051845
                 % of reads unmapped: too short |	0.69%
                Number of reads unmapped: other |	450806
                     % of reads unmapped: other |	0.15%
                                  CHIMERIC READS:
                       Number of chimeric reads |	0
                            % of chimeric reads |	0.00%