File Info

Filename
aih-tih-sc-9e2647-R1_A23YTGFLT4_1.Log.final.out
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/76/9be6ef401f179dd254a0d9422e43d6/aih-tih-sc-9e2647-R1_A23YTGFLT4_1.Log.final.out
Size
2.0 KB
Attempt
                                 Started job on |	Jun 03 19:30:26
                             Started mapping on |	Jun 03 19:32:10
                                    Finished on |	Jun 03 20:37:56
       Mapping speed, Million of reads per hour |	270.73

                          Number of input reads |	296747855
                      Average input read length |	259
                                    UNIQUE READS:
                   Uniquely mapped reads number |	284946193
                        Uniquely mapped reads % |	96.02%
                          Average mapped length |	259.44
                       Number of splices: Total |	339371516
            Number of splices: Annotated (sjdb) |	335774967
                       Number of splices: GT/AG |	336029362
                       Number of splices: GC/AG |	2434890
                       Number of splices: AT/AC |	293441
               Number of splices: Non-canonical |	613823
                      Mismatch rate per base, % |	0.17%
                         Deletion rate per base |	0.01%
                        Deletion average length |	1.10
                        Insertion rate per base |	0.00%
                       Insertion average length |	1.61
                             MULTI-MAPPING READS:
        Number of reads mapped to multiple loci |	7370077
             % of reads mapped to multiple loci |	2.48%
        Number of reads mapped to too many loci |	186512
             % of reads mapped to too many loci |	0.06%
                                  UNMAPPED READS:
  Number of reads unmapped: too many mismatches |	354465
       % of reads unmapped: too many mismatches |	0.12%
            Number of reads unmapped: too short |	2039761
                 % of reads unmapped: too short |	0.69%
                Number of reads unmapped: other |	156608
                     % of reads unmapped: other |	0.05%
                                  CHIMERIC READS:
                       Number of chimeric reads |	3199131
                            % of chimeric reads |	1.08%