File Info

Filename
.command.log
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/08/bd85ef9bd101fa7d88c71f963faf41/.command.log
Size
1.4 KB
Task
NFCORE_RNAFUSION:RNAFUSION:QC_WORKFLOW:BAM_RSEQC:RSEQC_JUNCTIONANNOTATION (aih-tih-sc-377071-R1_A23YTGFLT4_1)
Attempt

Content

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  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/d0/db0390e137cf3062481f869034d2c8/ref_annot.bed
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/08/bd85ef9bd101fa7d88c71f963faf41/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/08/bd85ef9bd101fa7d88c71f963faf41/.command.run
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/10/143049f5632c6d24be757d65633aec/aih-tih-sc-377071-R1_A23YTGFLT4_1.Aligned.sortedByCoord.out.bam.bai
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/a3/17a3d70b64a30cb7853f776d1e3e39/aih-tih-sc-377071-R1_A23YTGFLT4_1.Aligned.sortedByCoord.out.bam
==> STAGING COMPLETE (5 inputs)

null device 
          1 
null device 
          1 
total = 332928456
[W::hts_idx_load3] The index file is older than the data file: aih-tih-sc-377071-R1_A23YTGFLT4_1.Aligned.sortedByCoord.out.bam.bai
Reading reference bed file:  ref_annot.bed  ...  Done
Load BAM file ...  Done

===================================================================
Total splicing  Events:	332928456
Known Splicing Events:	329195882
Partial Novel Splicing Events:	1893315
Novel Splicing Events:	1741224
Filtered Splicing Events:	98035

Total splicing  Junctions:	612832
Known Splicing Junctions:	292195
Partial Novel Splicing Junctions:	196532
Novel Splicing Junctions:	124105

===================================================================
Create BED file ...
Create Interact file ...