File Info

Filename
fi_workdir/Log.final.out
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/c9/ad16d84606565e0a46896803425b9d/fi_workdir/Log.final.out
Size
2.0 KB
Attempt
                                 Started job on |	Jun 03 21:23:29
                             Started mapping on |	Jun 03 21:30:01
                                    Finished on |	Jun 03 22:18:37
       Mapping speed, Million of reads per hour |	347.19

                          Number of input reads |	281224084
                      Average input read length |	240
                                    UNIQUE READS:
                   Uniquely mapped reads number |	269661616
                        Uniquely mapped reads % |	95.89%
                          Average mapped length |	239.20
                       Number of splices: Total |	282106628
            Number of splices: Annotated (sjdb) |	278171312
                       Number of splices: GT/AG |	278639891
                       Number of splices: GC/AG |	1930538
                       Number of splices: AT/AC |	224390
               Number of splices: Non-canonical |	1311809
                      Mismatch rate per base, % |	0.29%
                         Deletion rate per base |	0.03%
                        Deletion average length |	2.19
                        Insertion rate per base |	0.00%
                       Insertion average length |	1.64
                             MULTI-MAPPING READS:
        Number of reads mapped to multiple loci |	9014827
             % of reads mapped to multiple loci |	3.21%
        Number of reads mapped to too many loci |	301546
             % of reads mapped to too many loci |	0.11%
                                  UNMAPPED READS:
  Number of reads unmapped: too many mismatches |	0
       % of reads unmapped: too many mismatches |	0.00%
            Number of reads unmapped: too short |	1857359
                 % of reads unmapped: too short |	0.66%
                Number of reads unmapped: other |	388736
                     % of reads unmapped: other |	0.14%
                                  CHIMERIC READS:
                       Number of chimeric reads |	0
                            % of chimeric reads |	0.00%