Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/2c/1a787d1daf818cf4a9a77063f87fc2/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/2c/1a787d1daf818cf4a9a77063f87fc2/.command.run
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/30/3cf4336b6d6237aae68dc4a0d3f4c1/aih-tih-sc-242a7d-R1_A23YTGFLT4_1.Aligned.sortedByCoord.out.bam
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/c2/68a0e4fe9b712d598a431d27357208/aih-tih-sc-242a7d-R1_A23YTGFLT4_1.Aligned.sortedByCoord.out.bam.bai
==> STAGING COMPLETE (4 inputs)

[W::hts_idx_load3] The index file is older than the data file: aih-tih-sc-242a7d-R1_A23YTGFLT4_1.Aligned.sortedByCoord.out.bam.bai
Load BAM file ...  Done
report duplicte rate based on sequence ...
report duplicte rate based on mapping  ...
generate R script ...
null device 
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