File Info

Filename
.command.log
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/20/f330eb00e2342f6a26638bd440d56e/.command.log
Size
1.1 KB
Task
NFCORE_RNAFUSION:RNAFUSION:KALLISTO_TO_MULTIQC (aih-tih-sc-2e5fe9-R1_A23YTGFLT4_1)
Attempt

Content

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  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/20/f330eb00e2342f6a26638bd440d56e/.command.run
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/20/f330eb00e2342f6a26638bd440d56e/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/b8/2252848c520b0a90bd2c4c614454e0/aih-tih-sc-2e5fe9-R1_A23YTGFLT4_1
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/5f/ee8c616e880c75fe1fc6799e5d9ce8/aih-tih-sc-2e5fe9-R1_A23YTGFLT4_1.sample_qc.tsv
==> STAGING COMPLETE (4 inputs)

Processing Kallisto file: aih-tih-sc-2e5fe9-R1_A23YTGFLT4_1/abundance.h5
Successfully converted aih-tih-sc-2e5fe9-R1_A23YTGFLT4_1/abundance.h5 to aih-tih-sc-2e5fe9-R1_A23YTGFLT4_1_kallisto_mqc.tsv
  Sample: aih-tih-sc-2e5fe9-R1_A23YTGFLT4_1
  Mean Fragment Length: 154.0 bp
  Median Fragment Length: 139.0 bp
  pct_mito_est_counts: 0.014%
  pct_ribo_est_counts: 0.848%
  pct_hk_est_counts: 0.455%
  pct_male_est_counts: 0.0%
  pct_mito_tpm: 0.031%
  pct_ribo_tpm: 2.557%
  pct_hk_tpm: 0.661%
  pct_male_tpm: 0.0%
  score_log2tpm1_mean_chry_signature: 6.015%