Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/d0/db0390e137cf3062481f869034d2c8/ref_annot.bed
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/27/b045ca619e2341868f0825bcbeb407/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/27/b045ca619e2341868f0825bcbeb407/.command.run
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/10/143049f5632c6d24be757d65633aec/aih-tih-sc-377071-R1_A23YTGFLT4_1.Aligned.sortedByCoord.out.bam.bai
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/a3/17a3d70b64a30cb7853f776d1e3e39/aih-tih-sc-377071-R1_A23YTGFLT4_1.Aligned.sortedByCoord.out.bam
==> STAGING COMPLETE (5 inputs)

processing ref_annot.bed ... Done
[W::hts_idx_load3] The index file is older than the data file: aih-tih-sc-377071-R1_A23YTGFLT4_1.Aligned.sortedByCoord.out.bam.bai
processing aih-tih-sc-377071-R1_A23YTGFLT4_1.Aligned.sortedByCoord.out.bam ... Finished