File Info

Filename
.command.log
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/37/f84db8aaa855293d5b750c74159491/.command.log
Size
9.4 KB
Task
NFCORE_RNAFUSION:RNAFUSION:FUSIONREPORT_WORKFLOW:FUSIONREPORT (aih-tih-sc-5519ab-R1_A23YTGFLT4_1)
Attempt

Content

View in new tab 
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/stage-e543dae6-5fea-4720-bfb6-150bf1ff20d4/82/1bfcba5045fc10a52ca200a4890a9a/dummy_file_fusioncatcher.txt
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/37/f84db8aaa855293d5b750c74159491/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/65/3367835cad7bcd292f086854ec514b/aih-tih-sc-5519ab-R1_A23YTGFLT4_1.arriba.fusions.filtered_pass_only.tsv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/37/f84db8aaa855293d5b750c74159491/.command.run
  Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/rna/GRCh38/fusion_report_db
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/b5/a93f4c95035dda84926e231a64249b/aih-tih-sc-5519ab-R1_A23YTGFLT4_1.starfusion.starfusion.fusion_predictions.filtered_pass_only.tsv
==> STAGING COMPLETE (6 inputs)

Running application...
GUCY1B2--NKAIN2
starfusion
LINC00381--NKAIN2
starfusion
NRG4--TBCA
starfusion
UBE2O--ZIC1
starfusion
TLK2--AC240565.1
starfusion
C12orf56--NKAIN2
starfusion
PCDHGA4--PCDHGA8
arriba
PCDHGA4--PCDHGA9
arriba
PCDHGA4--PCDHGB6
arriba
PCDHGA4--PCDHGA10
arriba
PCDHGA4--PCDHGB7
arriba
PCDHGA4--PCDHGA11
arriba
PCDHGA4--PCDHGA12
arriba
PCDHGA4--PCDHGC3
arriba
PCDHGA4--PCDHGC4
arriba
PCDHGA4--PCDHGC5
arriba
AC005993.1--RGS6
arriba
SBF2--PPIAP86
arriba
SBF2--LINC01299
arriba
PCDHGB2--PCDHGA8
arriba
PCDHGB2--PCDHGB6
arriba
PCDHGB2--PCDHGA10
arriba
PCDHGB2--PCDHGB7
arriba
PCDHGB2--PCDHGA11
arriba
PCDHGB2--PCDHGC3
arriba
PCDHGB2--PCDHGC4
arriba
PCDHGB2--PCDHGC5
arriba
PCDHGB2--PCDHGA12
arriba
PCDHGB2--PCDHGA9
arriba
TVP23C--CDRT4
arriba
C1QTNF3--AMACR
arriba
PCDHA11--PCDHAC1
arriba
PCDHA11--PCDHA13
arriba
PCDHA11--PCDHAC2
arriba
MTCYBP4--EYA4
arriba
EYA4--EYA4
arriba
RNU6-138P--KCNH8
arriba
KCNH8--KCNH8
arriba
CREBRF--AL137786.2
arriba
CREBRF--LINC02299
arriba
EFL1--GOLGA6L11P
arriba
PMS2P8--CCDC146
arriba
IGFL1P2--HIF3A
arriba

  0%|          | 0/43 [00:00<?, ?it/s]
Processing GUCY1B2--NKAIN2:   0%|          | 0/43 [00:00<?, ?it/s]
Processing GUCY1B2--NKAIN2:   2%|▏         | 1/43 [00:00<00:04,  8.91it/s]
Processing LINC00381--NKAIN2:   2%|▏         | 1/43 [00:00<00:04,  8.91it/s]
Processing LINC00381--NKAIN2:   5%|▍         | 2/43 [00:00<00:04,  9.24it/s]
Processing NRG4--TBCA:   5%|▍         | 2/43 [00:00<00:04,  9.24it/s]       
Processing NRG4--TBCA:   7%|▋         | 3/43 [00:00<00:04,  9.36it/s]
Processing UBE2O--ZIC1:   7%|▋         | 3/43 [00:00<00:04,  9.36it/s]
Processing UBE2O--ZIC1:   9%|▉         | 4/43 [00:00<00:04,  9.41it/s]
Processing TLK2--AC240565.1:   9%|▉         | 4/43 [00:00<00:04,  9.41it/s]
Processing TLK2--AC240565.1:  12%|█▏        | 5/43 [00:00<00:04,  9.45it/s]
Processing C12orf56--NKAIN2:  12%|█▏        | 5/43 [00:00<00:04,  9.45it/s]
Processing C12orf56--NKAIN2:  14%|█▍        | 6/43 [00:00<00:03,  9.47it/s]
Processing PCDHGA4--PCDHGA8:  14%|█▍        | 6/43 [00:00<00:03,  9.47it/s]
Processing PCDHGA4--PCDHGA8:  16%|█▋        | 7/43 [00:00<00:03,  9.48it/s]
Processing PCDHGA4--PCDHGA9:  16%|█▋        | 7/43 [00:00<00:03,  9.48it/s]
Processing PCDHGA4--PCDHGA9:  19%|█▊        | 8/43 [00:00<00:03,  9.49it/s]
Processing PCDHGA4--PCDHGB6:  19%|█▊        | 8/43 [00:00<00:03,  9.49it/s]
Processing PCDHGA4--PCDHGB6:  21%|██        | 9/43 [00:00<00:03,  9.48it/s]
Processing PCDHGA4--PCDHGA10:  21%|██        | 9/43 [00:00<00:03,  9.48it/s]
Processing PCDHGA4--PCDHGA10:  23%|██▎       | 10/43 [00:01<00:03,  9.49it/s]
Processing PCDHGA4--PCDHGB7:  23%|██▎       | 10/43 [00:01<00:03,  9.49it/s] 
Processing PCDHGA4--PCDHGB7:  26%|██▌       | 11/43 [00:01<00:03,  9.49it/s]
Processing PCDHGA4--PCDHGA11:  26%|██▌       | 11/43 [00:01<00:03,  9.49it/s]
Processing PCDHGA4--PCDHGA11:  28%|██▊       | 12/43 [00:01<00:03,  9.50it/s]
Processing PCDHGA4--PCDHGA12:  28%|██▊       | 12/43 [00:01<00:03,  9.50it/s]
Processing PCDHGA4--PCDHGA12:  30%|███       | 13/43 [00:01<00:03,  9.50it/s]
Processing PCDHGA4--PCDHGC3:  30%|███       | 13/43 [00:01<00:03,  9.50it/s] 
Processing PCDHGA4--PCDHGC3:  33%|███▎      | 14/43 [00:01<00:03,  9.49it/s]
Processing PCDHGA4--PCDHGC4:  33%|███▎      | 14/43 [00:01<00:03,  9.49it/s]
Processing PCDHGA4--PCDHGC4:  35%|███▍      | 15/43 [00:01<00:02,  9.50it/s]
Processing PCDHGA4--PCDHGC5:  35%|███▍      | 15/43 [00:01<00:02,  9.50it/s]
Processing PCDHGA4--PCDHGC5:  37%|███▋      | 16/43 [00:01<00:02,  9.50it/s]
Processing AC005993.1--RGS6:  37%|███▋      | 16/43 [00:01<00:02,  9.50it/s]
Processing AC005993.1--RGS6:  40%|███▉      | 17/43 [00:01<00:02,  9.50it/s]
Processing SBF2--PPIAP86:  40%|███▉      | 17/43 [00:01<00:02,  9.50it/s]   
Processing SBF2--PPIAP86:  42%|████▏     | 18/43 [00:01<00:02,  9.50it/s]
Processing SBF2--LINC01299:  42%|████▏     | 18/43 [00:01<00:02,  9.50it/s]
Processing SBF2--LINC01299:  44%|████▍     | 19/43 [00:02<00:02,  9.51it/s]
Processing PCDHGB2--PCDHGA8:  44%|████▍     | 19/43 [00:02<00:02,  9.51it/s]
Processing PCDHGB2--PCDHGA8:  47%|████▋     | 20/43 [00:02<00:02,  9.51it/s]
Processing PCDHGB2--PCDHGB6:  47%|████▋     | 20/43 [00:02<00:02,  9.51it/s]
Processing PCDHGB2--PCDHGB6:  49%|████▉     | 21/43 [00:02<00:02,  9.50it/s]
Processing PCDHGB2--PCDHGA10:  49%|████▉     | 21/43 [00:02<00:02,  9.50it/s]
Processing PCDHGB2--PCDHGA10:  51%|█████     | 22/43 [00:02<00:02,  9.51it/s]
Processing PCDHGB2--PCDHGB7:  51%|█████     | 22/43 [00:02<00:02,  9.51it/s] 
Processing PCDHGB2--PCDHGB7:  53%|█████▎    | 23/43 [00:02<00:02,  9.51it/s]
Processing PCDHGB2--PCDHGA11:  53%|█████▎    | 23/43 [00:02<00:02,  9.51it/s]
Processing PCDHGB2--PCDHGA11:  56%|█████▌    | 24/43 [00:02<00:01,  9.51it/s]
Processing PCDHGB2--PCDHGC3:  56%|█████▌    | 24/43 [00:02<00:01,  9.51it/s] 
Processing PCDHGB2--PCDHGC3:  58%|█████▊    | 25/43 [00:02<00:01,  9.51it/s]
Processing PCDHGB2--PCDHGC4:  58%|█████▊    | 25/43 [00:02<00:01,  9.51it/s]
Processing PCDHGB2--PCDHGC4:  60%|██████    | 26/43 [00:02<00:01,  9.51it/s]
Processing PCDHGB2--PCDHGC5:  60%|██████    | 26/43 [00:02<00:01,  9.51it/s]
Processing PCDHGB2--PCDHGC5:  63%|██████▎   | 27/43 [00:02<00:01,  9.51it/s]
Processing PCDHGB2--PCDHGA12:  63%|██████▎   | 27/43 [00:02<00:01,  9.51it/s]
Processing PCDHGB2--PCDHGA12:  65%|██████▌   | 28/43 [00:02<00:01,  9.51it/s]
Processing PCDHGB2--PCDHGA9:  65%|██████▌   | 28/43 [00:02<00:01,  9.51it/s] 
Processing PCDHGB2--PCDHGA9:  67%|██████▋   | 29/43 [00:03<00:01,  9.51it/s]
Processing TVP23C--CDRT4:  67%|██████▋   | 29/43 [00:03<00:01,  9.51it/s]   
Processing TVP23C--CDRT4:  70%|██████▉   | 30/43 [00:03<00:01,  9.51it/s]
Processing C1QTNF3--AMACR:  70%|██████▉   | 30/43 [00:03<00:01,  9.51it/s]
Processing C1QTNF3--AMACR:  72%|███████▏  | 31/43 [00:03<00:01,  9.51it/s]
Processing PCDHA11--PCDHAC1:  72%|███████▏  | 31/43 [00:03<00:01,  9.51it/s]
Processing PCDHA11--PCDHAC1:  74%|███████▍  | 32/43 [00:03<00:01,  9.51it/s]
Processing PCDHA11--PCDHA13:  74%|███████▍  | 32/43 [00:03<00:01,  9.51it/s]
Processing PCDHA11--PCDHA13:  77%|███████▋  | 33/43 [00:03<00:01,  9.50it/s]
Processing PCDHA11--PCDHAC2:  77%|███████▋  | 33/43 [00:03<00:01,  9.50it/s]
Processing PCDHA11--PCDHAC2:  79%|███████▉  | 34/43 [00:03<00:00,  9.51it/s]
Processing MTCYBP4--EYA4:  79%|███████▉  | 34/43 [00:03<00:00,  9.51it/s]   
Processing MTCYBP4--EYA4:  81%|████████▏ | 35/43 [00:03<00:00,  9.51it/s]
Processing EYA4--EYA4:  81%|████████▏ | 35/43 [00:03<00:00,  9.51it/s]   
Processing EYA4--EYA4:  84%|████████▎ | 36/43 [00:03<00:00,  9.51it/s]
Processing RNU6-138P--KCNH8:  84%|████████▎ | 36/43 [00:03<00:00,  9.51it/s]
Processing RNU6-138P--KCNH8:  86%|████████▌ | 37/43 [00:03<00:00,  9.50it/s]
Processing KCNH8--KCNH8:  86%|████████▌ | 37/43 [00:03<00:00,  9.50it/s]    
Processing KCNH8--KCNH8:  88%|████████▊ | 38/43 [00:04<00:00,  9.51it/s]
Processing CREBRF--AL137786.2:  88%|████████▊ | 38/43 [00:04<00:00,  9.51it/s]
Processing CREBRF--AL137786.2:  91%|█████████ | 39/43 [00:04<00:00,  9.51it/s]
Processing CREBRF--LINC02299:  91%|█████████ | 39/43 [00:04<00:00,  9.51it/s] 
Processing CREBRF--LINC02299:  93%|█████████▎| 40/43 [00:04<00:00,  9.45it/s]
Processing EFL1--GOLGA6L11P:  93%|█████████▎| 40/43 [00:04<00:00,  9.45it/s] 
Processing EFL1--GOLGA6L11P:  95%|█████████▌| 41/43 [00:04<00:00,  9.47it/s]
Processing PMS2P8--CCDC146:  95%|█████████▌| 41/43 [00:04<00:00,  9.47it/s] 
Processing PMS2P8--CCDC146:  98%|█████████▊| 42/43 [00:04<00:00,  9.48it/s]
Processing IGFL1P2--HIF3A:  98%|█████████▊| 42/43 [00:04<00:00,  9.48it/s] 
Processing IGFL1P2--HIF3A: 100%|██████████| 43/43 [00:04<00:00,  9.47it/s]
Processing IGFL1P2--HIF3A: 100%|██████████| 43/43 [00:04<00:00,  9.48it/s]
cat: fusion_report_db/DB-timestamp.txt: No such file or directory