Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/a4/70ea73390d494f815dab3a1fc5117d/aih-tih-sc-3abdf4-R1_A23YTGFLT4_1.Aligned.sortedByCoord.out.bam
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/d0/db0390e137cf3062481f869034d2c8/ref_annot.bed
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/73/50ee636c8520fb19aef577b17587ee/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/73/50ee636c8520fb19aef577b17587ee/.command.run
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/8a/5bf1f747d4063c4602e14db4154f4b/aih-tih-sc-3abdf4-R1_A23YTGFLT4_1.Aligned.sortedByCoord.out.bam.bai
==> STAGING COMPLETE (5 inputs)

null device 
          1 
null device 
          1 
total = 206057122
[W::hts_idx_load3] The index file is older than the data file: aih-tih-sc-3abdf4-R1_A23YTGFLT4_1.Aligned.sortedByCoord.out.bam.bai
Reading reference bed file:  ref_annot.bed  ...  Done
Load BAM file ...  Done

===================================================================
Total splicing  Events:	206057122
Known Splicing Events:	203974470
Partial Novel Splicing Events:	1448287
Novel Splicing Events:	560765
Filtered Splicing Events:	73600

Total splicing  Junctions:	421161
Known Splicing Junctions:	253804
Partial Novel Splicing Junctions:	111207
Novel Splicing Junctions:	56150

===================================================================
Create BED file ...
Create Interact file ...