/usr/local/bin/picard: line 5: warning: setlocale: LC_ALL: cannot change locale (en_US.UTF-8): No such file or directory
Jun 03, 2026 7:54:50 PM com.intel.gkl.NativeLibraryLoader load
INFO: Loading libgkl_compression.so from jar:file:/usr/local/share/picard-3.1.0-0/picard.jar!/com/intel/gkl/native/libgkl_compression.so
[Wed Jun 03 19:54:50 GMT 2026] CollectRnaSeqMetrics --REF_FLAT ref_annot.gtf.refflat --RIBOSOMAL_INTERVALS ctat_ref_annot.interval_list --STRAND_SPECIFICITY NONE --INPUT aih-tih-sc-3282fd-R1_A23YTGFLT4_1.Aligned.sortedByCoord.out.bam --OUTPUT aih-tih-sc-3282fd-R1_A23YTGFLT4_1_rna_metrics.txt --TMP_DIR ./tmp --MINIMUM_LENGTH 500 --RRNA_FRAGMENT_PERCENTAGE 0.8 --METRIC_ACCUMULATION_LEVEL ALL_READS --END_BIAS_BASES 100 --ASSUME_SORTED true --STOP_AFTER 0 --VERBOSITY INFO --QUIET false --VALIDATION_STRINGENCY STRICT --COMPRESSION_LEVEL 5 --MAX_RECORDS_IN_RAM 500000 --CREATE_INDEX false --CREATE_MD5_FILE false --help false --version false --showHidden false --USE_JDK_DEFLATER false --USE_JDK_INFLATER false
[Wed Jun 03 19:54:51 GMT 2026] Executing as ?@nf-7b3c7f69a68d1a086570683ebbb4844c-414fb-khzqs on Linux 6.12.88 amd64; OpenJDK 64-Bit Server VM 20-internal-adhoc..src; Deflater: Intel; Inflater: Intel; Provider GCS is available; Picard version: Version:3.1.0
WARNING: BAM index file /tmp/nxf.XXXXP31RNV/aih-tih-sc-3282fd-R1_A23YTGFLT4_1.Aligned.sortedByCoord.out.bam.bai is older than BAM /tmp/nxf.XXXXP31RNV/aih-tih-sc-3282fd-R1_A23YTGFLT4_1.Aligned.sortedByCoord.out.bam
INFO 2026-06-03 19:54:53 CollectRnaSeqMetrics Loaded 58279 genes.
INFO 2026-06-03 19:55:08 SinglePassSamProgram Processed 1,000,000 records. Elapsed time: 00:00:15s. Time for last 1,000,000: 15s. Last read position: chr1:1,387,368
INFO 2026-06-03 19:55:22 SinglePassSamProgram Processed 2,000,000 records. Elapsed time: 00:00:28s. Time for last 1,000,000: 13s. Last read position: chr1:2,588,339
INFO 2026-06-03 19:55:36 SinglePassSamProgram Processed 3,000,000 records. Elapsed time: 00:00:42s. Time for last 1,000,000: 14s. Last read position: chr1:8,863,902
INFO 2026-06-03 19:55:48 SinglePassSamProgram Processed 4,000,000 records. Elapsed time: 00:00:54s. Time for last 1,000,000: 11s. Last read position: chr1:11,790,840
INFO 2026-06-03 19:56:08 SinglePassSamProgram Processed 5,000,000 records. Elapsed time: 00:01:14s. Time for last 1,000,000: 20s. Last read position: chr1:15,660,453
INFO 2026-06-03 19:56:18 SinglePassSamProgram Processed 6,000,000 records. Elapsed time: 00:01:24s. Time for last 1,000,000: 9s. Last read position: chr1:17,004,994
INFO 2026-06-03 19:56:40 SinglePassSamProgram Processed 7,000,000 records. Elapsed time: 00:01:46s. Time for last 1,000,000: 22s. Last read position: chr1:19,739,816
INFO 2026-06-03 19:56:55 SinglePassSamProgram Processed 8,000,000 records. Elapsed time: 00:02:02s. Time for last 1,000,000: 15s. Last read position: chr1:21,875,895
INFO 2026-06-03 19:57:05 SinglePassSamProgram Processed 9,000,000 records. Elapsed time: 00:02:12s. Time for last 1,000,000: 9s. Last read position: chr1:23,311,306
INFO 2026-06-03 19:57:16 SinglePassSamProgram Processed 10,000,000 records. Elapsed time: 00:02:22s. Time for last 1,000,000: 10s. Last read position: chr1:25,901,578
INFO 2026-06-03 19:57:30 SinglePassSamProgram Processed 11,000,000 records. Elapsed time: 00:02:36s. Time for last 1,000,000: 13s. Last read position: chr1:27,409,987
INFO 2026-06-03 19:57:42 SinglePassSamProgram Processed 12,000,000 records. Elapsed time: 00:02:48s. Time for last 1,000,000: 12s. Last read position: chr1:30,964,789
INFO 2026-06-03 19:58:06 SinglePassSamProgram Processed 13,000,000 records. Elapsed time: 00:03:12s. Time for last 1,000,000: 24s. Last read position: chr1:32,280,114
INFO 2026-06-03 19:58:16 SinglePassSamProgram Processed 14,000,000 records. Elapsed time: 00:03:23s. Time for last 1,000,000: 10s. Last read position: chr1:35,192,597
INFO 2026-06-03 19:58:27 SinglePassSamProgram Processed 15,000,000 records. Elapsed time: 00:03:33s. Time for last 1,000,000: 10s. Last read position: chr1:37,569,101
INFO 2026-06-03 19:59:53 SinglePassSamProgram Processed 16,000,000 records. Elapsed time: 00:04:59s. Time for last 1,000,000: 86s. Last read position: chr1:39,965,916
INFO 2026-06-03 20:00:08 SinglePassSamProgram Processed 17,000,000 records. Elapsed time: 00:05:14s. Time for last 1,000,000: 14s. Last read position: chr1:43,415,979
INFO 2026-06-03 20:00:33 SinglePassSamProgram Processed 18,000,000 records. Elapsed time: 00:05:39s. Time for last 1,000,000: 25s. Last read position: chr1:45,604,947
INFO 2026-06-03 20:00:52 SinglePassSamProgram Processed 19,000,000 records. Elapsed time: 00:05:58s. Time for last 1,000,000: 18s. Last read position: chr1:51,806,727
INFO 2026-06-03 20:01:09 SinglePassSamProgram Processed 20,000,000 records. Elapsed time: 00:06:15s. Time for last 1,000,000: 17s. Last read position: chr1:58,576,672
INFO 2026-06-03 20:01:36 SinglePassSamProgram Processed 21,000,000 records. Elapsed time: 00:06:42s. Time for last 1,000,000: 27s. Last read position: chr1:70,232,348
INFO 2026-06-03 20:01:54 SinglePassSamProgram Processed 22,000,000 records. Elapsed time: 00:07:00s. Time for last 1,000,000: 17s. Last read position: chr1:88,983,627
INFO 2026-06-03 20:02:04 SinglePassSamProgram Processed 23,000,000 records. Elapsed time: 00:07:10s. Time for last 1,000,000: 9s. Last read position: chr1:94,487,961
INFO 2026-06-03 20:02:15 SinglePassSamProgram Processed 24,000,000 records. Elapsed time: 00:07:21s. Time for last 1,000,000: 10s. Last read position: chr1:109,269,975
INFO 2026-06-03 20:02:29 SinglePassSamProgram Processed 25,000,000 records. Elapsed time: 00:07:35s. Time for last 1,000,000: 13s. Last read position: chr1:112,667,091
INFO 2026-06-03 20:02:45 SinglePassSamProgram Processed 26,000,000 records. Elapsed time: 00:07:52s. Time for last 1,000,000: 16s. Last read position: chr1:116,395,275
INFO 2026-06-03 20:02:55 SinglePassSamProgram Processed 27,000,000 records. Elapsed time: 00:08:02s. Time for last 1,000,000: 10s. Last read position: chr1:119,948,422
INFO 2026-06-03 20:03:04 SinglePassSamProgram Processed 28,000,000 records. Elapsed time: 00:08:10s. Time for last 1,000,000: 8s. Last read position: chr1:144,063,177
INFO 2026-06-03 20:03:12 SinglePassSamProgram Processed 29,000,000 records. Elapsed time: 00:08:19s. Time for last 1,000,000: 8s. Last read position: chr1:146,156,167
INFO 2026-06-03 20:03:24 SinglePassSamProgram Processed 30,000,000 records. Elapsed time: 00:08:30s. Time for last 1,000,000: 11s. Last read position: chr1:148,589,295
INFO 2026-06-03 20:03:33 SinglePassSamProgram Processed 31,000,000 records. Elapsed time: 00:08:40s. Time for last 1,000,000: 9s. Last read position: chr1:149,852,977
INFO 2026-06-03 20:03:43 SinglePassSamProgram Processed 32,000,000 records. Elapsed time: 00:08:49s. Time for last 1,000,000: 9s. Last read position: chr1:150,750,025
INFO 2026-06-03 20:03:56 SinglePassSamProgram Processed 33,000,000 records. Elapsed time: 00:09:02s. Time for last 1,000,000: 13s. Last read position: chr1:151,775,837
INFO 2026-06-03 20:04:06 SinglePassSamProgram Processed 34,000,000 records. Elapsed time: 00:09:13s. Time for last 1,000,000: 10s. Last read position: chr1:154,157,588
INFO 2026-06-03 20:04:35 SinglePassSamProgram Processed 35,000,000 records. Elapsed time: 00:09:42s. Time for last 1,000,000: 29s. Last read position: chr1:154,602,048
INFO 2026-06-03 20:04:58 SinglePassSamProgram Processed 36,000,000 records. Elapsed time: 00:10:05s. Time for last 1,000,000: 22s. Last read position: chr1:155,237,357
INFO 2026-06-03 20:05:32 SinglePassSamProgram Processed 37,000,000 records. Elapsed time: 00:10:38s. Time for last 1,000,000: 33s. Last read position: chr1:156,061,368
INFO 2026-06-03 20:05:50 SinglePassSamProgram Processed 38,000,000 records. Elapsed time: 00:10:56s. Time for last 1,000,000: 18s. Last read position: chr1:156,816,079
INFO 2026-06-03 20:06:04 SinglePassSamProgram Processed 39,000,000 records. Elapsed time: 00:11:10s. Time for last 1,000,000: 14s. Last read position: chr1:160,354,208
INFO 2026-06-03 20:06:24 SinglePassSamProgram Processed 40,000,000 records. Elapsed time: 00:11:30s. Time for last 1,000,000: 20s. Last read position: chr1:161,518,076
INFO 2026-06-03 20:06:35 SinglePassSamProgram Processed 41,000,000 records. Elapsed time: 00:11:42s. Time for last 1,000,000: 11s. Last read position: chr1:168,231,833
INFO 2026-06-03 20:06:53 SinglePassSamProgram Processed 42,000,000 records. Elapsed time: 00:12:00s. Time for last 1,000,000: 18s. Last read position: chr1:172,585,907
INFO 2026-06-03 20:07:02 SinglePassSamProgram Processed 43,000,000 records. Elapsed time: 00:12:08s. Time for last 1,000,000: 8s. Last read position: chr1:182,385,355
INFO 2026-06-03 20:07:12 SinglePassSamProgram Processed 44,000,000 records. Elapsed time: 00:12:18s. Time for last 1,000,000: 9s. Last read position: chr1:186,336,557
INFO 2026-06-03 20:07:30 SinglePassSamProgram Processed 45,000,000 records. Elapsed time: 00:12:36s. Time for last 1,000,000: 18s. Last read position: chr1:200,912,088
INFO 2026-06-03 20:07:46 SinglePassSamProgram Processed 46,000,000 records. Elapsed time: 00:12:52s. Time for last 1,000,000: 15s. Last read position: chr1:203,709,324
INFO 2026-06-03 20:08:04 SinglePassSamProgram Processed 47,000,000 records. Elapsed time: 00:13:10s. Time for last 1,000,000: 17s. Last read position: chr1:206,406,423
INFO 2026-06-03 20:08:17 SinglePassSamProgram Processed 48,000,000 records. Elapsed time: 00:13:23s. Time for last 1,000,000: 13s. Last read position: chr1:207,785,096
INFO 2026-06-03 20:08:26 SinglePassSamProgram Processed 49,000,000 records. Elapsed time: 00:13:33s. Time for last 1,000,000: 9s. Last read position: chr1:220,879,867
INFO 2026-06-03 20:08:38 SinglePassSamProgram Processed 50,000,000 records. Elapsed time: 00:13:45s. Time for last 1,000,000: 12s. Last read position: chr1:226,377,190
INFO 2026-06-03 20:09:08 SinglePassSamProgram Processed 51,000,000 records. Elapsed time: 00:14:14s. Time for last 1,000,000: 29s. Last read position: chr1:231,528,801
INFO 2026-06-03 20:09:27 SinglePassSamProgram Processed 52,000,000 records. Elapsed time: 00:14:33s. Time for last 1,000,000: 19s. Last read position: chr1:243,052,153
INFO 2026-06-03 20:09:45 SinglePassSamProgram Processed 53,000,000 records. Elapsed time: 00:14:52s. Time for last 1,000,000: 18s. Last read position: chr2:1,693,093
INFO 2026-06-03 20:10:01 SinglePassSamProgram Processed 54,000,000 records. Elapsed time: 00:15:08s. Time for last 1,000,000: 15s. Last read position: chr2:15,379,798
INFO 2026-06-03 20:10:15 SinglePassSamProgram Processed 55,000,000 records. Elapsed time: 00:15:21s. Time for last 1,000,000: 13s. Last read position: chr2:24,711,072
INFO 2026-06-03 20:10:25 SinglePassSamProgram Processed 56,000,000 records. Elapsed time: 00:15:32s. Time for last 1,000,000: 10s. Last read position: chr2:27,217,832
INFO 2026-06-03 20:10:34 SinglePassSamProgram Processed 57,000,000 records. Elapsed time: 00:15:41s. Time for last 1,000,000: 9s. Last read position: chr2:28,799,244
INFO 2026-06-03 20:10:44 SinglePassSamProgram Processed 58,000,000 records. Elapsed time: 00:15:50s. Time for last 1,000,000: 9s. Last read position: chr2:32,916,264
INFO 2026-06-03 20:10:50 SinglePassSamProgram Processed 59,000,000 records. Elapsed time: 00:15:56s. Time for last 1,000,000: 5s. Last read position: chr2:32,916,406
INFO 2026-06-03 20:10:56 SinglePassSamProgram Processed 60,000,000 records. Elapsed time: 00:16:03s. Time for last 1,000,000: 6s. Last read position: chr2:36,916,124
INFO 2026-06-03 20:11:06 SinglePassSamProgram Processed 61,000,000 records. Elapsed time: 00:16:12s. Time for last 1,000,000: 9s. Last read position: chr2:43,224,363
INFO 2026-06-03 20:11:17 SinglePassSamProgram Processed 62,000,000 records. Elapsed time: 00:16:24s. Time for last 1,000,000: 11s. Last read position: chr2:47,790,929
INFO 2026-06-03 20:11:28 SinglePassSamProgram Processed 63,000,000 records. Elapsed time: 00:16:35s. Time for last 1,000,000: 11s. Last read position: chr2:55,232,816
INFO 2026-06-03 20:11:53 SinglePassSamProgram Processed 64,000,000 records. Elapsed time: 00:16:59s. Time for last 1,000,000: 24s. Last read position: chr2:64,552,315
INFO 2026-06-03 20:12:11 SinglePassSamProgram Processed 65,000,000 records. Elapsed time: 00:17:17s. Time for last 1,000,000: 18s. Last read position: chr2:70,276,733
INFO 2026-06-03 20:12:25 SinglePassSamProgram Processed 66,000,000 records. Elapsed time: 00:17:31s. Time for last 1,000,000: 13s. Last read position: chr2:74,371,611
INFO 2026-06-03 20:12:31 SinglePassSamProgram Processed 67,000,000 records. Elapsed time: 00:17:38s. Time for last 1,000,000: 6s. Last read position: chr2:85,553,339
INFO 2026-06-03 20:12:38 SinglePassSamProgram Processed 68,000,000 records. Elapsed time: 00:17:45s. Time for last 1,000,000: 6s. Last read position: chr2:95,855,815
INFO 2026-06-03 20:12:47 SinglePassSamProgram Processed 69,000,000 records. Elapsed time: 00:17:54s. Time for last 1,000,000: 8s. Last read position: chr2:98,537,875
INFO 2026-06-03 20:12:57 SinglePassSamProgram Processed 70,000,000 records. Elapsed time: 00:18:03s. Time for last 1,000,000: 9s. Last read position: chr2:106,424,790
INFO 2026-06-03 20:13:01 SinglePassSamProgram Processed 71,000,000 records. Elapsed time: 00:18:07s. Time for last 1,000,000: 3s. Last read position: chr2:109,819,760
INFO 2026-06-03 20:13:05 SinglePassSamProgram Processed 72,000,000 records. Elapsed time: 00:18:11s. Time for last 1,000,000: 4s. Last read position: chr2:112,433,397
INFO 2026-06-03 20:13:13 SinglePassSamProgram Processed 73,000,000 records. Elapsed time: 00:18:19s. Time for last 1,000,000: 7s. Last read position: chr2:127,318,189
INFO 2026-06-03 20:13:21 SinglePassSamProgram Processed 74,000,000 records. Elapsed time: 00:18:28s. Time for last 1,000,000: 8s. Last read position: chr2:138,013,954
INFO 2026-06-03 20:13:33 SinglePassSamProgram Processed 75,000,000 records. Elapsed time: 00:18:39s. Time for last 1,000,000: 11s. Last read position: chr2:159,320,319
INFO 2026-06-03 20:13:44 SinglePassSamProgram Processed 76,000,000 records. Elapsed time: 00:18:51s. Time for last 1,000,000: 11s. Last read position: chr2:171,554,723
INFO 2026-06-03 20:13:56 SinglePassSamProgram Processed 77,000,000 records. Elapsed time: 00:19:02s. Time for last 1,000,000: 11s. Last read position: chr2:178,537,091
INFO 2026-06-03 20:14:47 SinglePassSamProgram Processed 78,000,000 records. Elapsed time: 00:19:54s. Time for last 1,000,000: 51s. Last read position: chr2:188,993,297
INFO 2026-06-03 20:15:05 SinglePassSamProgram Processed 79,000,000 records. Elapsed time: 00:20:12s. Time for last 1,000,000: 17s. Last read position: chr2:196,688,938
INFO 2026-06-03 20:15:23 SinglePassSamProgram Processed 80,000,000 records. Elapsed time: 00:20:29s. Time for last 1,000,000: 17s. Last read position: chr2:202,302,969
INFO 2026-06-03 20:15:32 SinglePassSamProgram Processed 81,000,000 records. Elapsed time: 00:20:38s. Time for last 1,000,000: 9s. Last read position: chr2:212,538,448
INFO 2026-06-03 20:15:55 SinglePassSamProgram Processed 82,000,000 records. Elapsed time: 00:21:01s. Time for last 1,000,000: 23s. Last read position: chr2:215,391,632
INFO 2026-06-03 20:16:54 SinglePassSamProgram Processed 83,000,000 records. Elapsed time: 00:22:00s. Time for last 1,000,000: 58s. Last read position: chr2:216,137,168
INFO 2026-06-03 20:17:07 SinglePassSamProgram Processed 84,000,000 records. Elapsed time: 00:22:13s. Time for last 1,000,000: 13s. Last read position: chr2:218,404,301
INFO 2026-06-03 20:17:15 SinglePassSamProgram Processed 85,000,000 records. Elapsed time: 00:22:22s. Time for last 1,000,000: 8s. Last read position: chr2:224,844,761
INFO 2026-06-03 20:17:31 SinglePassSamProgram Processed 86,000,000 records. Elapsed time: 00:22:38s. Time for last 1,000,000: 16s. Last read position: chr2:231,239,968
INFO 2026-06-03 20:17:45 SinglePassSamProgram Processed 87,000,000 records. Elapsed time: 00:22:51s. Time for last 1,000,000: 13s. Last read position: chr2:235,042,944
INFO 2026-06-03 20:18:02 SinglePassSamProgram Processed 88,000,000 records. Elapsed time: 00:23:09s. Time for last 1,000,000: 17s. Last read position: chr2:240,529,399
INFO 2026-06-03 20:18:25 SinglePassSamProgram Processed 89,000,000 records. Elapsed time: 00:23:31s. Time for last 1,000,000: 22s. Last read position: chr3:4,981,281
INFO 2026-06-03 20:18:36 SinglePassSamProgram Processed 90,000,000 records. Elapsed time: 00:23:42s. Time for last 1,000,000: 11s. Last read position: chr3:11,829,820
INFO 2026-06-03 20:18:45 SinglePassSamProgram Processed 91,000,000 records. Elapsed time: 00:23:51s. Time for last 1,000,000: 8s. Last read position: chr3:15,675,897
INFO 2026-06-03 20:18:53 SinglePassSamProgram Processed 92,000,000 records. Elapsed time: 00:23:59s. Time for last 1,000,000: 8s. Last read position: chr3:33,072,555
INFO 2026-06-03 20:19:03 SinglePassSamProgram Processed 93,000,000 records. Elapsed time: 00:24:10s. Time for last 1,000,000: 10s. Last read position: chr3:39,410,903
INFO 2026-06-03 20:19:20 SinglePassSamProgram Processed 94,000,000 records. Elapsed time: 00:24:26s. Time for last 1,000,000: 16s. Last read position: chr3:45,159,816
INFO 2026-06-03 20:19:29 SinglePassSamProgram Processed 95,000,000 records. Elapsed time: 00:24:35s. Time for last 1,000,000: 9s. Last read position: chr3:47,661,428
INFO 2026-06-03 20:19:43 SinglePassSamProgram Processed 96,000,000 records. Elapsed time: 00:24:49s. Time for last 1,000,000: 13s. Last read position: chr3:48,694,924
INFO 2026-06-03 20:19:55 SinglePassSamProgram Processed 97,000,000 records. Elapsed time: 00:25:02s. Time for last 1,000,000: 12s. Last read position: chr3:49,358,131
INFO 2026-06-03 20:20:05 SinglePassSamProgram Processed 98,000,000 records. Elapsed time: 00:25:12s. Time for last 1,000,000: 10s. Last read position: chr3:50,355,415
INFO 2026-06-03 20:20:13 SinglePassSamProgram Processed 99,000,000 records. Elapsed time: 00:25:19s. Time for last 1,000,000: 7s. Last read position: chr3:52,495,372
INFO 2026-06-03 20:20:24 SinglePassSamProgram Processed 100,000,000 records. Elapsed time: 00:25:31s. Time for last 1,000,000: 11s. Last read position: chr3:53,881,981
INFO 2026-06-03 20:20:36 SinglePassSamProgram Processed 101,000,000 records. Elapsed time: 00:25:43s. Time for last 1,000,000: 12s. Last read position: chr3:64,616,086
INFO 2026-06-03 20:20:49 SinglePassSamProgram Processed 102,000,000 records. Elapsed time: 00:25:55s. Time for last 1,000,000: 12s. Last read position: chr3:97,843,233
INFO 2026-06-03 20:21:00 SinglePassSamProgram Processed 103,000,000 records. Elapsed time: 00:26:07s. Time for last 1,000,000: 11s. Last read position: chr3:105,552,564
INFO 2026-06-03 20:21:07 SinglePassSamProgram Processed 104,000,000 records. Elapsed time: 00:26:14s. Time for last 1,000,000: 6s. Last read position: chr3:119,675,220
INFO 2026-06-03 20:21:14 SinglePassSamProgram Processed 105,000,000 records. Elapsed time: 00:26:20s. Time for last 1,000,000: 6s. Last read position: chr3:123,318,024
INFO 2026-06-03 20:21:21 SinglePassSamProgram Processed 106,000,000 records. Elapsed time: 00:26:28s. Time for last 1,000,000: 7s. Last read position: chr3:128,626,736
INFO 2026-06-03 20:21:32 SinglePassSamProgram Processed 107,000,000 records. Elapsed time: 00:26:38s. Time for last 1,000,000: 10s. Last read position: chr3:133,574,226
INFO 2026-06-03 20:21:43 SinglePassSamProgram Processed 108,000,000 records. Elapsed time: 00:26:49s. Time for last 1,000,000: 11s. Last read position: chr3:143,028,518
INFO 2026-06-03 20:21:50 SinglePassSamProgram Processed 109,000,000 records. Elapsed time: 00:26:57s. Time for last 1,000,000: 7s. Last read position: chr3:156,553,722
INFO 2026-06-03 20:22:00 SinglePassSamProgram Processed 110,000,000 records. Elapsed time: 00:27:06s. Time for last 1,000,000: 9s. Last read position: chr3:172,247,591
INFO 2026-06-03 20:22:10 SinglePassSamProgram Processed 111,000,000 records. Elapsed time: 00:27:17s. Time for last 1,000,000: 10s. Last read position: chr3:184,174,946
INFO 2026-06-03 20:22:31 SinglePassSamProgram Processed 112,000,000 records. Elapsed time: 00:27:38s. Time for last 1,000,000: 20s. Last read position: chr3:186,789,159
INFO 2026-06-03 20:22:41 SinglePassSamProgram Processed 113,000,000 records. Elapsed time: 00:27:48s. Time for last 1,000,000: 10s. Last read position: chr3:194,652,838
INFO 2026-06-03 20:22:48 SinglePassSamProgram Processed 114,000,000 records. Elapsed time: 00:27:54s. Time for last 1,000,000: 6s. Last read position: chr3:195,779,658
INFO 2026-06-03 20:23:10 SinglePassSamProgram Processed 115,000,000 records. Elapsed time: 00:28:16s. Time for last 1,000,000: 21s. Last read position: chr3:196,071,423
INFO 2026-06-03 20:23:26 SinglePassSamProgram Processed 116,000,000 records. Elapsed time: 00:28:33s. Time for last 1,000,000: 16s. Last read position: chr4:1,212,338
INFO 2026-06-03 20:23:37 SinglePassSamProgram Processed 117,000,000 records. Elapsed time: 00:28:43s. Time for last 1,000,000: 10s. Last read position: chr4:2,829,929
INFO 2026-06-03 20:23:50 SinglePassSamProgram Processed 118,000,000 records. Elapsed time: 00:28:56s. Time for last 1,000,000: 13s. Last read position: chr4:7,838,687
INFO 2026-06-03 20:23:59 SinglePassSamProgram Processed 119,000,000 records. Elapsed time: 00:29:05s. Time for last 1,000,000: 8s. Last read position: chr4:24,549,012
INFO 2026-06-03 20:24:06 SinglePassSamProgram Processed 120,000,000 records. Elapsed time: 00:29:13s. Time for last 1,000,000: 7s. Last read position: chr4:40,243,729
INFO 2026-06-03 20:24:17 SinglePassSamProgram Processed 121,000,000 records. Elapsed time: 00:29:23s. Time for last 1,000,000: 10s. Last read position: chr4:54,267,300
INFO 2026-06-03 20:24:24 SinglePassSamProgram Processed 122,000,000 records. Elapsed time: 00:29:31s. Time for last 1,000,000: 7s. Last read position: chr4:54,295,145
INFO 2026-06-03 20:24:31 SinglePassSamProgram Processed 123,000,000 records. Elapsed time: 00:29:37s. Time for last 1,000,000: 6s. Last read position: chr4:72,147,246
INFO 2026-06-03 20:24:41 SinglePassSamProgram Processed 124,000,000 records. Elapsed time: 00:29:47s. Time for last 1,000,000: 9s. Last read position: chr4:77,611,061
INFO 2026-06-03 20:25:14 SinglePassSamProgram Processed 125,000,000 records. Elapsed time: 00:30:20s. Time for last 1,000,000: 33s. Last read position: chr4:86,935,181
INFO 2026-06-03 20:25:21 SinglePassSamProgram Processed 126,000,000 records. Elapsed time: 00:30:27s. Time for last 1,000,000: 7s. Last read position: chr4:101,239,998
INFO 2026-06-03 20:25:41 SinglePassSamProgram Processed 127,000,000 records. Elapsed time: 00:30:47s. Time for last 1,000,000: 19s. Last read position: chr4:113,759,355
INFO 2026-06-03 20:25:51 SinglePassSamProgram Processed 128,000,000 records. Elapsed time: 00:30:58s. Time for last 1,000,000: 10s. Last read position: chr4:128,287,446
INFO 2026-06-03 20:25:58 SinglePassSamProgram Processed 129,000,000 records. Elapsed time: 00:31:05s. Time for last 1,000,000: 7s. Last read position: chr4:150,490,952
INFO 2026-06-03 20:26:14 SinglePassSamProgram Processed 130,000,000 records. Elapsed time: 00:31:20s. Time for last 1,000,000: 15s. Last read position: chr4:168,406,675
INFO 2026-06-03 20:26:24 SinglePassSamProgram Processed 131,000,000 records. Elapsed time: 00:31:30s. Time for last 1,000,000: 9s. Last read position: chr4:186,617,716
INFO 2026-06-03 20:26:31 SinglePassSamProgram Processed 132,000,000 records. Elapsed time: 00:31:38s. Time for last 1,000,000: 7s. Last read position: chr5:10,680,708
INFO 2026-06-03 20:26:54 SinglePassSamProgram Processed 133,000,000 records. Elapsed time: 00:32:00s. Time for last 1,000,000: 22s. Last read position: chr5:14,712,880
INFO 2026-06-03 20:27:04 SinglePassSamProgram Processed 134,000,000 records. Elapsed time: 00:32:10s. Time for last 1,000,000: 10s. Last read position: chr5:37,443,264
INFO 2026-06-03 20:27:13 SinglePassSamProgram Processed 135,000,000 records. Elapsed time: 00:32:19s. Time for last 1,000,000: 8s. Last read position: chr5:54,518,193
INFO 2026-06-03 20:27:23 SinglePassSamProgram Processed 136,000,000 records. Elapsed time: 00:32:29s. Time for last 1,000,000: 10s. Last read position: chr5:66,155,025
INFO 2026-06-03 20:27:31 SinglePassSamProgram Processed 137,000,000 records. Elapsed time: 00:32:37s. Time for last 1,000,000: 7s. Last read position: chr5:72,193,955
INFO 2026-06-03 20:27:39 SinglePassSamProgram Processed 138,000,000 records. Elapsed time: 00:32:45s. Time for last 1,000,000: 8s. Last read position: chr5:80,255,882
INFO 2026-06-03 20:27:49 SinglePassSamProgram Processed 139,000,000 records. Elapsed time: 00:32:55s. Time for last 1,000,000: 10s. Last read position: chr5:93,587,962
INFO 2026-06-03 20:28:09 SinglePassSamProgram Processed 140,000,000 records. Elapsed time: 00:33:15s. Time for last 1,000,000: 19s. Last read position: chr5:109,713,604
INFO 2026-06-03 20:28:20 SinglePassSamProgram Processed 141,000,000 records. Elapsed time: 00:33:26s. Time for last 1,000,000: 10s. Last read position: chr5:128,174,614
INFO 2026-06-03 20:28:29 SinglePassSamProgram Processed 142,000,000 records. Elapsed time: 00:33:35s. Time for last 1,000,000: 9s. Last read position: chr5:134,609,645
INFO 2026-06-03 20:28:39 SinglePassSamProgram Processed 143,000,000 records. Elapsed time: 00:33:45s. Time for last 1,000,000: 9s. Last read position: chr5:138,930,843
INFO 2026-06-03 20:28:49 SinglePassSamProgram Processed 144,000,000 records. Elapsed time: 00:33:55s. Time for last 1,000,000: 10s. Last read position: chr5:141,179,363
INFO 2026-06-03 20:28:55 SinglePassSamProgram Processed 145,000,000 records. Elapsed time: 00:34:01s. Time for last 1,000,000: 5s. Last read position: chr5:142,873,424
INFO 2026-06-03 20:29:07 SinglePassSamProgram Processed 146,000,000 records. Elapsed time: 00:34:14s. Time for last 1,000,000: 12s. Last read position: chr5:150,117,826
INFO 2026-06-03 20:29:14 SinglePassSamProgram Processed 147,000,000 records. Elapsed time: 00:34:20s. Time for last 1,000,000: 6s. Last read position: chr5:150,402,566
INFO 2026-06-03 20:29:20 SinglePassSamProgram Processed 148,000,000 records. Elapsed time: 00:34:27s. Time for last 1,000,000: 6s. Last read position: chr5:150,405,109
INFO 2026-06-03 20:29:28 SinglePassSamProgram Processed 149,000,000 records. Elapsed time: 00:34:35s. Time for last 1,000,000: 8s. Last read position: chr5:150,406,909
INFO 2026-06-03 20:29:35 SinglePassSamProgram Processed 150,000,000 records. Elapsed time: 00:34:42s. Time for last 1,000,000: 7s. Last read position: chr5:150,649,643
INFO 2026-06-03 20:29:46 SinglePassSamProgram Processed 151,000,000 records. Elapsed time: 00:34:53s. Time for last 1,000,000: 10s. Last read position: chr5:154,794,226
INFO 2026-06-03 20:29:55 SinglePassSamProgram Processed 152,000,000 records. Elapsed time: 00:35:01s. Time for last 1,000,000: 8s. Last read position: chr5:170,248,665
INFO 2026-06-03 20:30:09 SinglePassSamProgram Processed 153,000,000 records. Elapsed time: 00:35:16s. Time for last 1,000,000: 14s. Last read position: chr5:172,950,558
INFO 2026-06-03 20:30:16 SinglePassSamProgram Processed 154,000,000 records. Elapsed time: 00:35:22s. Time for last 1,000,000: 6s. Last read position: chr5:177,524,820
INFO 2026-06-03 20:30:36 SinglePassSamProgram Processed 155,000,000 records. Elapsed time: 00:35:43s. Time for last 1,000,000: 20s. Last read position: chr5:179,774,794
INFO 2026-06-03 20:30:44 SinglePassSamProgram Processed 156,000,000 records. Elapsed time: 00:35:51s. Time for last 1,000,000: 8s. Last read position: chr5:180,792,046
INFO 2026-06-03 20:30:52 SinglePassSamProgram Processed 157,000,000 records. Elapsed time: 00:35:59s. Time for last 1,000,000: 7s. Last read position: chr6:6,145,630
INFO 2026-06-03 20:30:59 SinglePassSamProgram Processed 158,000,000 records. Elapsed time: 00:36:06s. Time for last 1,000,000: 6s. Last read position: chr6:13,615,521
INFO 2026-06-03 20:31:05 SinglePassSamProgram Processed 159,000,000 records. Elapsed time: 00:36:12s. Time for last 1,000,000: 5s. Last read position: chr6:26,124,571
INFO 2026-06-03 20:31:09 SinglePassSamProgram Processed 160,000,000 records. Elapsed time: 00:36:15s. Time for last 1,000,000: 3s. Last read position: chr6:29,723,529
INFO 2026-06-03 20:31:13 SinglePassSamProgram Processed 161,000,000 records. Elapsed time: 00:36:19s. Time for last 1,000,000: 4s. Last read position: chr6:30,490,344
INFO 2026-06-03 20:31:23 SinglePassSamProgram Processed 162,000,000 records. Elapsed time: 00:36:29s. Time for last 1,000,000: 10s. Last read position: chr6:31,137,891
INFO 2026-06-03 20:31:28 SinglePassSamProgram Processed 163,000,000 records. Elapsed time: 00:36:34s. Time for last 1,000,000: 4s. Last read position: chr6:31,626,829
INFO 2026-06-03 20:31:38 SinglePassSamProgram Processed 164,000,000 records. Elapsed time: 00:36:44s. Time for last 1,000,000: 10s. Last read position: chr6:31,816,967
INFO 2026-06-03 20:31:43 SinglePassSamProgram Processed 165,000,000 records. Elapsed time: 00:36:50s. Time for last 1,000,000: 5s. Last read position: chr6:31,995,421
INFO 2026-06-03 20:31:55 SinglePassSamProgram Processed 166,000,000 records. Elapsed time: 00:37:01s. Time for last 1,000,000: 11s. Last read position: chr6:32,192,176
INFO 2026-06-03 20:31:58 SinglePassSamProgram Processed 167,000,000 records. Elapsed time: 00:37:05s. Time for last 1,000,000: 3s. Last read position: chr6:32,852,415
INFO 2026-06-03 20:32:05 SinglePassSamProgram Processed 168,000,000 records. Elapsed time: 00:37:11s. Time for last 1,000,000: 6s. Last read position: chr6:33,289,123
INFO 2026-06-03 20:32:13 SinglePassSamProgram Processed 169,000,000 records. Elapsed time: 00:37:19s. Time for last 1,000,000: 7s. Last read position: chr6:34,244,875
INFO 2026-06-03 20:32:18 SinglePassSamProgram Processed 170,000,000 records. Elapsed time: 00:37:24s. Time for last 1,000,000: 4s. Last read position: chr6:37,005,804
INFO 2026-06-03 20:32:23 SinglePassSamProgram Processed 171,000,000 records. Elapsed time: 00:37:29s. Time for last 1,000,000: 5s. Last read position: chr6:43,037,636
INFO 2026-06-03 20:32:32 SinglePassSamProgram Processed 172,000,000 records. Elapsed time: 00:37:39s. Time for last 1,000,000: 9s. Last read position: chr6:44,254,740
INFO 2026-06-03 20:32:37 SinglePassSamProgram Processed 173,000,000 records. Elapsed time: 00:37:44s. Time for last 1,000,000: 5s. Last read position: chr6:56,459,059
INFO 2026-06-03 20:33:19 SinglePassSamProgram Processed 174,000,000 records. Elapsed time: 00:38:26s. Time for last 1,000,000: 41s. Last read position: chr6:75,183,903
INFO 2026-06-03 20:33:30 SinglePassSamProgram Processed 175,000,000 records. Elapsed time: 00:38:37s. Time for last 1,000,000: 11s. Last read position: chr6:89,081,394
INFO 2026-06-03 20:33:39 SinglePassSamProgram Processed 176,000,000 records. Elapsed time: 00:38:45s. Time for last 1,000,000: 8s. Last read position: chr6:106,971,631
INFO 2026-06-03 20:33:48 SinglePassSamProgram Processed 177,000,000 records. Elapsed time: 00:38:55s. Time for last 1,000,000: 9s. Last read position: chr6:113,860,441
INFO 2026-06-03 20:33:55 SinglePassSamProgram Processed 178,000,000 records. Elapsed time: 00:39:02s. Time for last 1,000,000: 7s. Last read position: chr6:128,397,601
INFO 2026-06-03 20:34:11 SinglePassSamProgram Processed 179,000,000 records. Elapsed time: 00:39:17s. Time for last 1,000,000: 15s. Last read position: chr6:137,878,468
INFO 2026-06-03 20:34:18 SinglePassSamProgram Processed 180,000,000 records. Elapsed time: 00:39:24s. Time for last 1,000,000: 7s. Last read position: chr6:146,062,065
INFO 2026-06-03 20:34:38 SinglePassSamProgram Processed 181,000,000 records. Elapsed time: 00:39:44s. Time for last 1,000,000: 20s. Last read position: chr6:153,282,490
INFO 2026-06-03 20:34:47 SinglePassSamProgram Processed 182,000,000 records. Elapsed time: 00:39:54s. Time for last 1,000,000: 9s. Last read position: chr6:158,783,557
INFO 2026-06-03 20:34:54 SinglePassSamProgram Processed 183,000,000 records. Elapsed time: 00:40:00s. Time for last 1,000,000: 6s. Last read position: chr6:159,693,172
INFO 2026-06-03 20:35:07 SinglePassSamProgram Processed 184,000,000 records. Elapsed time: 00:40:13s. Time for last 1,000,000: 13s. Last read position: chr6:168,509,962
INFO 2026-06-03 20:35:15 SinglePassSamProgram Processed 185,000,000 records. Elapsed time: 00:40:21s. Time for last 1,000,000: 8s. Last read position: chr7:2,362,749
INFO 2026-06-03 20:35:22 SinglePassSamProgram Processed 186,000,000 records. Elapsed time: 00:40:28s. Time for last 1,000,000: 6s. Last read position: chr7:5,527,684
INFO 2026-06-03 20:35:30 SinglePassSamProgram Processed 187,000,000 records. Elapsed time: 00:40:36s. Time for last 1,000,000: 8s. Last read position: chr7:5,529,303
INFO 2026-06-03 20:35:37 SinglePassSamProgram Processed 188,000,000 records. Elapsed time: 00:40:44s. Time for last 1,000,000: 7s. Last read position: chr7:16,627,102
INFO 2026-06-03 20:35:55 SinglePassSamProgram Processed 189,000,000 records. Elapsed time: 00:41:01s. Time for last 1,000,000: 17s. Last read position: chr7:26,197,662
INFO 2026-06-03 20:36:07 SinglePassSamProgram Processed 190,000,000 records. Elapsed time: 00:41:13s. Time for last 1,000,000: 11s. Last read position: chr7:39,505,463
INFO 2026-06-03 20:36:13 SinglePassSamProgram Processed 191,000,000 records. Elapsed time: 00:41:20s. Time for last 1,000,000: 6s. Last read position: chr7:44,571,632
INFO 2026-06-03 20:36:22 SinglePassSamProgram Processed 192,000,000 records. Elapsed time: 00:41:28s. Time for last 1,000,000: 8s. Last read position: chr7:55,152,559
INFO 2026-06-03 20:36:30 SinglePassSamProgram Processed 193,000,000 records. Elapsed time: 00:41:36s. Time for last 1,000,000: 8s. Last read position: chr7:67,281,303
INFO 2026-06-03 20:36:35 SinglePassSamProgram Processed 194,000,000 records. Elapsed time: 00:41:41s. Time for last 1,000,000: 4s. Last read position: chr7:73,769,510
INFO 2026-06-03 20:36:47 SinglePassSamProgram Processed 195,000,000 records. Elapsed time: 00:41:53s. Time for last 1,000,000: 11s. Last read position: chr7:75,389,636
INFO 2026-06-03 20:36:52 SinglePassSamProgram Processed 196,000,000 records. Elapsed time: 00:41:58s. Time for last 1,000,000: 5s. Last read position: chr7:76,497,411
INFO 2026-06-03 20:36:59 SinglePassSamProgram Processed 197,000,000 records. Elapsed time: 00:42:06s. Time for last 1,000,000: 7s. Last read position: chr7:90,412,687
INFO 2026-06-03 20:37:33 SinglePassSamProgram Processed 198,000,000 records. Elapsed time: 00:42:39s. Time for last 1,000,000: 33s. Last read position: chr7:96,278,347
INFO 2026-06-03 20:37:47 SinglePassSamProgram Processed 199,000,000 records. Elapsed time: 00:42:53s. Time for last 1,000,000: 14s. Last read position: chr7:99,892,153
INFO 2026-06-03 20:37:55 SinglePassSamProgram Processed 200,000,000 records. Elapsed time: 00:43:01s. Time for last 1,000,000: 7s. Last read position: chr7:100,813,672
INFO 2026-06-03 20:38:03 SinglePassSamProgram Processed 201,000,000 records. Elapsed time: 00:43:09s. Time for last 1,000,000: 8s. Last read position: chr7:102,483,851
INFO 2026-06-03 20:38:05 SinglePassSamProgram Processed 202,000,000 records. Elapsed time: 00:43:12s. Time for last 1,000,000: 2s. Last read position: chr7:103,075,395
INFO 2026-06-03 20:38:25 SinglePassSamProgram Processed 203,000,000 records. Elapsed time: 00:43:31s. Time for last 1,000,000: 19s. Last read position: chr7:107,926,303
INFO 2026-06-03 20:38:40 SinglePassSamProgram Processed 204,000,000 records. Elapsed time: 00:43:47s. Time for last 1,000,000: 15s. Last read position: chr7:127,652,421
INFO 2026-06-03 20:38:48 SinglePassSamProgram Processed 205,000,000 records. Elapsed time: 00:43:54s. Time for last 1,000,000: 7s. Last read position: chr7:130,173,636
INFO 2026-06-03 20:38:55 SinglePassSamProgram Processed 206,000,000 records. Elapsed time: 00:44:01s. Time for last 1,000,000: 6s. Last read position: chr7:138,916,855
INFO 2026-06-03 20:39:04 SinglePassSamProgram Processed 207,000,000 records. Elapsed time: 00:44:11s. Time for last 1,000,000: 9s. Last read position: chr7:142,802,171
INFO 2026-06-03 20:39:09 SinglePassSamProgram Processed 208,000,000 records. Elapsed time: 00:44:15s. Time for last 1,000,000: 4s. Last read position: chr7:149,012,151
INFO 2026-06-03 20:39:14 SinglePassSamProgram Processed 209,000,000 records. Elapsed time: 00:44:20s. Time for last 1,000,000: 4s. Last read position: chr7:151,076,287
INFO 2026-06-03 20:39:32 SinglePassSamProgram Processed 210,000,000 records. Elapsed time: 00:44:38s. Time for last 1,000,000: 17s. Last read position: chr7:157,181,629
INFO 2026-06-03 20:39:45 SinglePassSamProgram Processed 211,000,000 records. Elapsed time: 00:44:51s. Time for last 1,000,000: 13s. Last read position: chr8:11,849,065
INFO 2026-06-03 20:40:01 SinglePassSamProgram Processed 212,000,000 records. Elapsed time: 00:45:08s. Time for last 1,000,000: 16s. Last read position: chr8:22,417,698
INFO 2026-06-03 20:40:10 SinglePassSamProgram Processed 213,000,000 records. Elapsed time: 00:45:17s. Time for last 1,000,000: 8s. Last read position: chr8:26,408,026
INFO 2026-06-03 20:40:20 SinglePassSamProgram Processed 214,000,000 records. Elapsed time: 00:45:26s. Time for last 1,000,000: 9s. Last read position: chr8:33,412,952
INFO 2026-06-03 20:40:32 SinglePassSamProgram Processed 215,000,000 records. Elapsed time: 00:45:39s. Time for last 1,000,000: 12s. Last read position: chr8:38,819,851
INFO 2026-06-03 20:40:47 SinglePassSamProgram Processed 216,000,000 records. Elapsed time: 00:45:53s. Time for last 1,000,000: 14s. Last read position: chr8:42,316,743
INFO 2026-06-03 20:40:58 SinglePassSamProgram Processed 217,000,000 records. Elapsed time: 00:46:04s. Time for last 1,000,000: 10s. Last read position: chr8:55,782,752
INFO 2026-06-03 20:41:09 SinglePassSamProgram Processed 218,000,000 records. Elapsed time: 00:46:15s. Time for last 1,000,000: 11s. Last read position: chr8:67,299,248
INFO 2026-06-03 20:41:15 SinglePassSamProgram Processed 219,000,000 records. Elapsed time: 00:46:22s. Time for last 1,000,000: 6s. Last read position: chr8:80,641,448
INFO 2026-06-03 20:41:22 SinglePassSamProgram Processed 220,000,000 records. Elapsed time: 00:46:29s. Time for last 1,000,000: 7s. Last read position: chr8:98,715,296
INFO 2026-06-03 20:41:47 SinglePassSamProgram Processed 221,000,000 records. Elapsed time: 00:46:53s. Time for last 1,000,000: 24s. Last read position: chr8:102,305,111
INFO 2026-06-03 20:41:59 SinglePassSamProgram Processed 222,000,000 records. Elapsed time: 00:47:05s. Time for last 1,000,000: 12s. Last read position: chr8:120,283,765
INFO 2026-06-03 20:42:10 SinglePassSamProgram Processed 223,000,000 records. Elapsed time: 00:47:16s. Time for last 1,000,000: 10s. Last read position: chr8:133,284,293
INFO 2026-06-03 20:42:22 SinglePassSamProgram Processed 224,000,000 records. Elapsed time: 00:47:28s. Time for last 1,000,000: 11s. Last read position: chr8:143,580,190
INFO 2026-06-03 20:42:29 SinglePassSamProgram Processed 225,000,000 records. Elapsed time: 00:47:35s. Time for last 1,000,000: 6s. Last read position: chr8:143,860,323
INFO 2026-06-03 20:42:29 SinglePassSamProgram Processed 226,000,000 records. Elapsed time: 00:47:36s. Time for last 1,000,000: 0s. Last read position: chr8:143,864,685
INFO 2026-06-03 20:42:32 SinglePassSamProgram Processed 227,000,000 records. Elapsed time: 00:47:38s. Time for last 1,000,000: 2s. Last read position: chr8:143,919,811
INFO 2026-06-03 20:42:46 SinglePassSamProgram Processed 228,000,000 records. Elapsed time: 00:47:52s. Time for last 1,000,000: 13s. Last read position: chr8:144,096,484
INFO 2026-06-03 20:42:54 SinglePassSamProgram Processed 229,000,000 records. Elapsed time: 00:48:00s. Time for last 1,000,000: 8s. Last read position: chr9:311,951
INFO 2026-06-03 20:43:08 SinglePassSamProgram Processed 230,000,000 records. Elapsed time: 00:48:14s. Time for last 1,000,000: 13s. Last read position: chr9:9,442,159
INFO 2026-06-03 20:43:17 SinglePassSamProgram Processed 231,000,000 records. Elapsed time: 00:48:24s. Time for last 1,000,000: 9s. Last read position: chr9:32,448,901
INFO 2026-06-03 20:43:22 SinglePassSamProgram Processed 232,000,000 records. Elapsed time: 00:48:29s. Time for last 1,000,000: 5s. Last read position: chr9:35,045,625
INFO 2026-06-03 20:43:33 SinglePassSamProgram Processed 233,000,000 records. Elapsed time: 00:48:39s. Time for last 1,000,000: 10s. Last read position: chr9:35,829,546
INFO 2026-06-03 20:43:41 SinglePassSamProgram Processed 234,000,000 records. Elapsed time: 00:48:47s. Time for last 1,000,000: 7s. Last read position: chr9:69,252,817
INFO 2026-06-03 20:43:49 SinglePassSamProgram Processed 235,000,000 records. Elapsed time: 00:48:56s. Time for last 1,000,000: 8s. Last read position: chr9:86,035,493
INFO 2026-06-03 20:43:59 SinglePassSamProgram Processed 236,000,000 records. Elapsed time: 00:49:05s. Time for last 1,000,000: 9s. Last read position: chr9:93,557,846
INFO 2026-06-03 20:44:04 SinglePassSamProgram Processed 237,000,000 records. Elapsed time: 00:49:11s. Time for last 1,000,000: 5s. Last read position: chr9:101,408,060
INFO 2026-06-03 20:44:17 SinglePassSamProgram Processed 238,000,000 records. Elapsed time: 00:49:24s. Time for last 1,000,000: 12s. Last read position: chr9:111,727,870
INFO 2026-06-03 20:44:25 SinglePassSamProgram Processed 239,000,000 records. Elapsed time: 00:49:31s. Time for last 1,000,000: 7s. Last read position: chr9:115,031,614
INFO 2026-06-03 20:44:39 SinglePassSamProgram Processed 240,000,000 records. Elapsed time: 00:49:45s. Time for last 1,000,000: 13s. Last read position: chr9:121,341,144
INFO 2026-06-03 20:44:46 SinglePassSamProgram Processed 241,000,000 records. Elapsed time: 00:49:53s. Time for last 1,000,000: 7s. Last read position: chr9:125,929,746
INFO 2026-06-03 20:44:54 SinglePassSamProgram Processed 242,000,000 records. Elapsed time: 00:50:01s. Time for last 1,000,000: 7s. Last read position: chr9:128,149,515
INFO 2026-06-03 20:45:04 SinglePassSamProgram Processed 243,000,000 records. Elapsed time: 00:50:11s. Time for last 1,000,000: 10s. Last read position: chr9:128,607,603
INFO 2026-06-03 20:45:16 SinglePassSamProgram Processed 244,000,000 records. Elapsed time: 00:50:22s. Time for last 1,000,000: 11s. Last read position: chr9:130,452,311
INFO 2026-06-03 20:45:23 SinglePassSamProgram Processed 245,000,000 records. Elapsed time: 00:50:29s. Time for last 1,000,000: 7s. Last read position: chr9:131,467,644
INFO 2026-06-03 20:45:30 SinglePassSamProgram Processed 246,000,000 records. Elapsed time: 00:50:36s. Time for last 1,000,000: 6s. Last read position: chr9:133,367,382
INFO 2026-06-03 20:45:36 SinglePassSamProgram Processed 247,000,000 records. Elapsed time: 00:50:42s. Time for last 1,000,000: 6s. Last read position: chr9:136,418,829
INFO 2026-06-03 20:45:51 SinglePassSamProgram Processed 248,000,000 records. Elapsed time: 00:50:57s. Time for last 1,000,000: 15s. Last read position: chr9:136,979,055
INFO 2026-06-03 20:46:00 SinglePassSamProgram Processed 249,000,000 records. Elapsed time: 00:51:07s. Time for last 1,000,000: 9s. Last read position: chr10:384,586
INFO 2026-06-03 20:46:11 SinglePassSamProgram Processed 250,000,000 records. Elapsed time: 00:51:18s. Time for last 1,000,000: 10s. Last read position: chr10:7,576,963
INFO 2026-06-03 20:46:18 SinglePassSamProgram Processed 251,000,000 records. Elapsed time: 00:51:24s. Time for last 1,000,000: 6s. Last read position: chr10:20,001,921
INFO 2026-06-03 20:46:31 SinglePassSamProgram Processed 252,000,000 records. Elapsed time: 00:51:38s. Time for last 1,000,000: 13s. Last read position: chr10:30,029,574
INFO 2026-06-03 20:46:45 SinglePassSamProgram Processed 253,000,000 records. Elapsed time: 00:51:51s. Time for last 1,000,000: 13s. Last read position: chr10:35,010,336
INFO 2026-06-03 20:46:50 SinglePassSamProgram Processed 254,000,000 records. Elapsed time: 00:51:56s. Time for last 1,000,000: 4s. Last read position: chr10:46,011,104
INFO 2026-06-03 20:46:56 SinglePassSamProgram Processed 255,000,000 records. Elapsed time: 00:52:02s. Time for last 1,000,000: 5s. Last read position: chr10:51,699,452
INFO 2026-06-03 20:47:04 SinglePassSamProgram Processed 256,000,000 records. Elapsed time: 00:52:10s. Time for last 1,000,000: 8s. Last read position: chr10:68,989,216
INFO 2026-06-03 20:47:13 SinglePassSamProgram Processed 257,000,000 records. Elapsed time: 00:52:19s. Time for last 1,000,000: 8s. Last read position: chr10:73,426,280
INFO 2026-06-03 20:47:27 SinglePassSamProgram Processed 258,000,000 records. Elapsed time: 00:52:33s. Time for last 1,000,000: 14s. Last read position: chr10:78,035,362
INFO 2026-06-03 20:47:32 SinglePassSamProgram Processed 259,000,000 records. Elapsed time: 00:52:39s. Time for last 1,000,000: 5s. Last read position: chr10:86,970,219
INFO 2026-06-03 20:47:40 SinglePassSamProgram Processed 260,000,000 records. Elapsed time: 00:52:46s. Time for last 1,000,000: 7s. Last read position: chr10:92,974,115
INFO 2026-06-03 20:47:52 SinglePassSamProgram Processed 261,000,000 records. Elapsed time: 00:52:58s. Time for last 1,000,000: 11s. Last read position: chr10:97,385,961
INFO 2026-06-03 20:47:58 SinglePassSamProgram Processed 262,000,000 records. Elapsed time: 00:53:05s. Time for last 1,000,000: 6s. Last read position: chr10:101,990,551
INFO 2026-06-03 20:48:17 SinglePassSamProgram Processed 263,000,000 records. Elapsed time: 00:53:24s. Time for last 1,000,000: 18s. Last read position: chr10:103,440,431
INFO 2026-06-03 20:48:25 SinglePassSamProgram Processed 264,000,000 records. Elapsed time: 00:53:32s. Time for last 1,000,000: 8s. Last read position: chr10:114,847,094
INFO 2026-06-03 20:48:33 SinglePassSamProgram Processed 265,000,000 records. Elapsed time: 00:53:40s. Time for last 1,000,000: 8s. Last read position: chr10:121,843,594
INFO 2026-06-03 20:48:50 SinglePassSamProgram Processed 266,000,000 records. Elapsed time: 00:53:57s. Time for last 1,000,000: 17s. Last read position: chr10:128,077,685
INFO 2026-06-03 20:48:56 SinglePassSamProgram Processed 267,000,000 records. Elapsed time: 00:54:03s. Time for last 1,000,000: 6s. Last read position: chr11:314,282
INFO 2026-06-03 20:49:04 SinglePassSamProgram Processed 268,000,000 records. Elapsed time: 00:54:10s. Time for last 1,000,000: 7s. Last read position: chr11:609,593
INFO 2026-06-03 20:49:14 SinglePassSamProgram Processed 269,000,000 records. Elapsed time: 00:54:20s. Time for last 1,000,000: 9s. Last read position: chr11:1,763,814
INFO 2026-06-03 20:49:24 SinglePassSamProgram Processed 270,000,000 records. Elapsed time: 00:54:30s. Time for last 1,000,000: 10s. Last read position: chr11:4,518,655
INFO 2026-06-03 20:49:33 SinglePassSamProgram Processed 271,000,000 records. Elapsed time: 00:54:39s. Time for last 1,000,000: 9s. Last read position: chr11:8,684,808
INFO 2026-06-03 20:49:51 SinglePassSamProgram Processed 272,000,000 records. Elapsed time: 00:54:57s. Time for last 1,000,000: 18s. Last read position: chr11:10,804,402
INFO 2026-06-03 20:50:00 SinglePassSamProgram Processed 273,000,000 records. Elapsed time: 00:55:06s. Time for last 1,000,000: 8s. Last read position: chr11:18,333,131
INFO 2026-06-03 20:50:08 SinglePassSamProgram Processed 274,000,000 records. Elapsed time: 00:55:15s. Time for last 1,000,000: 8s. Last read position: chr11:34,357,460
INFO 2026-06-03 20:50:17 SinglePassSamProgram Processed 275,000,000 records. Elapsed time: 00:55:24s. Time for last 1,000,000: 8s. Last read position: chr11:46,311,124
INFO 2026-06-03 20:50:29 SinglePassSamProgram Processed 276,000,000 records. Elapsed time: 00:55:35s. Time for last 1,000,000: 11s. Last read position: chr11:47,754,505
INFO 2026-06-03 20:50:37 SinglePassSamProgram Processed 277,000,000 records. Elapsed time: 00:55:44s. Time for last 1,000,000: 8s. Last read position: chr11:57,796,504
INFO 2026-06-03 20:50:51 SinglePassSamProgram Processed 278,000,000 records. Elapsed time: 00:55:57s. Time for last 1,000,000: 13s. Last read position: chr11:61,008,451
INFO 2026-06-03 20:51:02 SinglePassSamProgram Processed 279,000,000 records. Elapsed time: 00:56:09s. Time for last 1,000,000: 11s. Last read position: chr11:62,521,999
INFO 2026-06-03 20:51:06 SinglePassSamProgram Processed 280,000,000 records. Elapsed time: 00:56:12s. Time for last 1,000,000: 3s. Last read position: chr11:62,596,477
INFO 2026-06-03 20:51:16 SinglePassSamProgram Processed 281,000,000 records. Elapsed time: 00:56:23s. Time for last 1,000,000: 10s. Last read position: chr11:63,904,856
INFO 2026-06-03 20:51:24 SinglePassSamProgram Processed 282,000,000 records. Elapsed time: 00:56:30s. Time for last 1,000,000: 7s. Last read position: chr11:64,769,988
INFO 2026-06-03 20:51:32 SinglePassSamProgram Processed 283,000,000 records. Elapsed time: 00:56:39s. Time for last 1,000,000: 8s. Last read position: chr11:65,500,971
INFO 2026-06-03 20:51:40 SinglePassSamProgram Processed 284,000,000 records. Elapsed time: 00:56:47s. Time for last 1,000,000: 7s. Last read position: chr11:65,654,724
INFO 2026-06-03 20:51:49 SinglePassSamProgram Processed 285,000,000 records. Elapsed time: 00:56:56s. Time for last 1,000,000: 9s. Last read position: chr11:66,235,315
INFO 2026-06-03 20:51:59 SinglePassSamProgram Processed 286,000,000 records. Elapsed time: 00:57:05s. Time for last 1,000,000: 9s. Last read position: chr11:67,353,191
INFO 2026-06-03 20:52:07 SinglePassSamProgram Processed 287,000,000 records. Elapsed time: 00:57:13s. Time for last 1,000,000: 7s. Last read position: chr11:68,596,182
INFO 2026-06-03 20:52:20 SinglePassSamProgram Processed 288,000,000 records. Elapsed time: 00:57:26s. Time for last 1,000,000: 12s. Last read position: chr11:72,017,751
INFO 2026-06-03 20:52:35 SinglePassSamProgram Processed 289,000,000 records. Elapsed time: 00:57:42s. Time for last 1,000,000: 15s. Last read position: chr11:74,835,886
INFO 2026-06-03 20:52:44 SinglePassSamProgram Processed 290,000,000 records. Elapsed time: 00:57:51s. Time for last 1,000,000: 9s. Last read position: chr11:82,689,773
INFO 2026-06-03 20:52:56 SinglePassSamProgram Processed 291,000,000 records. Elapsed time: 00:58:02s. Time for last 1,000,000: 11s. Last read position: chr11:95,129,379
INFO 2026-06-03 20:53:03 SinglePassSamProgram Processed 292,000,000 records. Elapsed time: 00:58:10s. Time for last 1,000,000: 7s. Last read position: chr11:105,029,190
INFO 2026-06-03 20:53:14 SinglePassSamProgram Processed 293,000,000 records. Elapsed time: 00:58:21s. Time for last 1,000,000: 10s. Last read position: chr11:117,152,513
INFO 2026-06-03 20:53:24 SinglePassSamProgram Processed 294,000,000 records. Elapsed time: 00:58:31s. Time for last 1,000,000: 9s. Last read position: chr11:118,534,527
INFO 2026-06-03 20:53:33 SinglePassSamProgram Processed 295,000,000 records. Elapsed time: 00:58:39s. Time for last 1,000,000: 8s. Last read position: chr11:119,665,033
INFO 2026-06-03 20:53:43 SinglePassSamProgram Processed 296,000,000 records. Elapsed time: 00:58:49s. Time for last 1,000,000: 10s. Last read position: chr11:124,624,959
INFO 2026-06-03 20:53:50 SinglePassSamProgram Processed 297,000,000 records. Elapsed time: 00:58:56s. Time for last 1,000,000: 7s. Last read position: chr11:130,109,446
INFO 2026-06-03 20:54:01 SinglePassSamProgram Processed 298,000,000 records. Elapsed time: 00:59:07s. Time for last 1,000,000: 11s. Last read position: chr12:1,593,068
INFO 2026-06-03 20:54:11 SinglePassSamProgram Processed 299,000,000 records. Elapsed time: 00:59:17s. Time for last 1,000,000: 9s. Last read position: chr12:6,329,794
INFO 2026-06-03 20:54:37 SinglePassSamProgram Processed 300,000,000 records. Elapsed time: 00:59:43s. Time for last 1,000,000: 25s. Last read position: chr12:6,856,245
INFO 2026-06-03 20:54:44 SinglePassSamProgram Processed 301,000,000 records. Elapsed time: 00:59:51s. Time for last 1,000,000: 7s. Last read position: chr12:7,088,709
INFO 2026-06-03 20:54:52 SinglePassSamProgram Processed 302,000,000 records. Elapsed time: 00:59:59s. Time for last 1,000,000: 7s. Last read position: chr12:9,072,658
INFO 2026-06-03 20:55:00 SinglePassSamProgram Processed 303,000,000 records. Elapsed time: 01:00:06s. Time for last 1,000,000: 7s. Last read position: chr12:9,755,175
INFO 2026-06-03 20:55:05 SinglePassSamProgram Processed 304,000,000 records. Elapsed time: 01:00:11s. Time for last 1,000,000: 5s. Last read position: chr12:14,787,164
INFO 2026-06-03 20:55:14 SinglePassSamProgram Processed 305,000,000 records. Elapsed time: 01:00:21s. Time for last 1,000,000: 9s. Last read position: chr12:27,676,427
INFO 2026-06-03 20:55:25 SinglePassSamProgram Processed 306,000,000 records. Elapsed time: 01:00:32s. Time for last 1,000,000: 11s. Last read position: chr12:46,361,128
INFO 2026-06-03 20:55:35 SinglePassSamProgram Processed 307,000,000 records. Elapsed time: 01:00:41s. Time for last 1,000,000: 9s. Last read position: chr12:49,041,234
INFO 2026-06-03 20:55:42 SinglePassSamProgram Processed 308,000,000 records. Elapsed time: 01:00:48s. Time for last 1,000,000: 6s. Last read position: chr12:49,741,601
INFO 2026-06-03 20:55:51 SinglePassSamProgram Processed 309,000,000 records. Elapsed time: 01:00:58s. Time for last 1,000,000: 9s. Last read position: chr12:52,235,250
INFO 2026-06-03 20:56:02 SinglePassSamProgram Processed 310,000,000 records. Elapsed time: 01:01:08s. Time for last 1,000,000: 10s. Last read position: chr12:53,455,354
INFO 2026-06-03 20:56:18 SinglePassSamProgram Processed 311,000,000 records. Elapsed time: 01:01:24s. Time for last 1,000,000: 15s. Last read position: chr12:54,520,785
INFO 2026-06-03 20:56:28 SinglePassSamProgram Processed 312,000,000 records. Elapsed time: 01:01:34s. Time for last 1,000,000: 10s. Last read position: chr12:56,160,242
INFO 2026-06-03 20:56:40 SinglePassSamProgram Processed 313,000,000 records. Elapsed time: 01:01:47s. Time for last 1,000,000: 12s. Last read position: chr12:56,712,826
INFO 2026-06-03 20:56:54 SinglePassSamProgram Processed 314,000,000 records. Elapsed time: 01:02:01s. Time for last 1,000,000: 13s. Last read position: chr12:57,104,800
INFO 2026-06-03 20:57:09 SinglePassSamProgram Processed 315,000,000 records. Elapsed time: 01:02:15s. Time for last 1,000,000: 14s. Last read position: chr12:57,199,977
INFO 2026-06-03 20:57:23 SinglePassSamProgram Processed 316,000,000 records. Elapsed time: 01:02:29s. Time for last 1,000,000: 14s. Last read position: chr12:57,751,640
INFO 2026-06-03 20:57:32 SinglePassSamProgram Processed 317,000,000 records. Elapsed time: 01:02:38s. Time for last 1,000,000: 9s. Last read position: chr12:68,839,333
INFO 2026-06-03 20:57:43 SinglePassSamProgram Processed 318,000,000 records. Elapsed time: 01:02:50s. Time for last 1,000,000: 11s. Last read position: chr12:89,349,305
INFO 2026-06-03 20:57:49 SinglePassSamProgram Processed 319,000,000 records. Elapsed time: 01:02:56s. Time for last 1,000,000: 6s. Last read position: chr12:96,013,204
INFO 2026-06-03 20:58:04 SinglePassSamProgram Processed 320,000,000 records. Elapsed time: 01:03:10s. Time for last 1,000,000: 14s. Last read position: chr12:105,107,804
INFO 2026-06-03 20:58:12 SinglePassSamProgram Processed 321,000,000 records. Elapsed time: 01:03:18s. Time for last 1,000,000: 8s. Last read position: chr12:110,340,796
INFO 2026-06-03 20:58:24 SinglePassSamProgram Processed 322,000,000 records. Elapsed time: 01:03:31s. Time for last 1,000,000: 12s. Last read position: chr12:112,907,049
INFO 2026-06-03 20:58:40 SinglePassSamProgram Processed 323,000,000 records. Elapsed time: 01:03:46s. Time for last 1,000,000: 15s. Last read position: chr12:118,034,228
INFO 2026-06-03 20:58:48 SinglePassSamProgram Processed 324,000,000 records. Elapsed time: 01:03:55s. Time for last 1,000,000: 8s. Last read position: chr12:121,240,336
INFO 2026-06-03 20:58:57 SinglePassSamProgram Processed 325,000,000 records. Elapsed time: 01:04:03s. Time for last 1,000,000: 8s. Last read position: chr12:122,988,730
INFO 2026-06-03 20:59:09 SinglePassSamProgram Processed 326,000,000 records. Elapsed time: 01:04:15s. Time for last 1,000,000: 11s. Last read position: chr12:131,714,837
INFO 2026-06-03 20:59:16 SinglePassSamProgram Processed 327,000,000 records. Elapsed time: 01:04:23s. Time for last 1,000,000: 7s. Last read position: chr13:19,659,016
INFO 2026-06-03 20:59:22 SinglePassSamProgram Processed 328,000,000 records. Elapsed time: 01:04:29s. Time for last 1,000,000: 5s. Last read position: chr13:27,440,167
INFO 2026-06-03 20:59:32 SinglePassSamProgram Processed 329,000,000 records. Elapsed time: 01:04:38s. Time for last 1,000,000: 9s. Last read position: chr13:40,665,840
INFO 2026-06-03 20:59:40 SinglePassSamProgram Processed 330,000,000 records. Elapsed time: 01:04:46s. Time for last 1,000,000: 7s. Last read position: chr13:46,728,861
INFO 2026-06-03 20:59:47 SinglePassSamProgram Processed 331,000,000 records. Elapsed time: 01:04:53s. Time for last 1,000,000: 6s. Last read position: chr13:75,481,564
INFO 2026-06-03 21:00:01 SinglePassSamProgram Processed 332,000,000 records. Elapsed time: 01:05:07s. Time for last 1,000,000: 14s. Last read position: chr13:98,474,856
INFO 2026-06-03 21:00:13 SinglePassSamProgram Processed 333,000,000 records. Elapsed time: 01:05:19s. Time for last 1,000,000: 12s. Last read position: chr13:110,478,043
INFO 2026-06-03 21:00:23 SinglePassSamProgram Processed 334,000,000 records. Elapsed time: 01:05:30s. Time for last 1,000,000: 10s. Last read position: chr14:20,408,340
INFO 2026-06-03 21:00:40 SinglePassSamProgram Processed 335,000,000 records. Elapsed time: 01:05:46s. Time for last 1,000,000: 16s. Last read position: chr14:22,813,301
INFO 2026-06-03 21:00:48 SinglePassSamProgram Processed 336,000,000 records. Elapsed time: 01:05:54s. Time for last 1,000,000: 8s. Last read position: chr14:23,638,867
INFO 2026-06-03 21:00:58 SinglePassSamProgram Processed 337,000,000 records. Elapsed time: 01:06:04s. Time for last 1,000,000: 9s. Last read position: chr14:24,369,245
INFO 2026-06-03 21:01:13 SinglePassSamProgram Processed 338,000,000 records. Elapsed time: 01:06:19s. Time for last 1,000,000: 14s. Last read position: chr14:35,402,001
INFO 2026-06-03 21:01:20 SinglePassSamProgram Processed 339,000,000 records. Elapsed time: 01:06:26s. Time for last 1,000,000: 7s. Last read position: chr14:49,862,590
INFO 2026-06-03 21:01:27 SinglePassSamProgram Processed 340,000,000 records. Elapsed time: 01:06:34s. Time for last 1,000,000: 7s. Last read position: chr14:55,639,193
INFO 2026-06-03 21:01:46 SinglePassSamProgram Processed 341,000,000 records. Elapsed time: 01:06:52s. Time for last 1,000,000: 18s. Last read position: chr14:64,055,986
INFO 2026-06-03 21:02:14 SinglePassSamProgram Processed 342,000,000 records. Elapsed time: 01:07:20s. Time for last 1,000,000: 28s. Last read position: chr14:68,790,377
INFO 2026-06-03 21:02:24 SinglePassSamProgram Processed 343,000,000 records. Elapsed time: 01:07:30s. Time for last 1,000,000: 10s. Last read position: chr14:73,148,036
INFO 2026-06-03 21:02:33 SinglePassSamProgram Processed 344,000,000 records. Elapsed time: 01:07:40s. Time for last 1,000,000: 9s. Last read position: chr14:75,117,304
INFO 2026-06-03 21:02:40 SinglePassSamProgram Processed 345,000,000 records. Elapsed time: 01:07:47s. Time for last 1,000,000: 7s. Last read position: chr14:90,404,377
INFO 2026-06-03 21:02:48 SinglePassSamProgram Processed 346,000,000 records. Elapsed time: 01:07:55s. Time for last 1,000,000: 8s. Last read position: chr14:95,113,204
INFO 2026-06-03 21:03:07 SinglePassSamProgram Processed 347,000,000 records. Elapsed time: 01:08:13s. Time for last 1,000,000: 18s. Last read position: chr14:102,001,332
INFO 2026-06-03 21:04:19 SinglePassSamProgram Processed 348,000,000 records. Elapsed time: 01:09:26s. Time for last 1,000,000: 72s. Last read position: chr14:103,130,055
INFO 2026-06-03 21:04:39 SinglePassSamProgram Processed 349,000,000 records. Elapsed time: 01:09:45s. Time for last 1,000,000: 19s. Last read position: chr14:105,145,734
INFO 2026-06-03 21:04:43 SinglePassSamProgram Processed 350,000,000 records. Elapsed time: 01:09:50s. Time for last 1,000,000: 4s. Last read position: chr14:105,707,384
INFO 2026-06-03 21:04:46 SinglePassSamProgram Processed 351,000,000 records. Elapsed time: 01:09:53s. Time for last 1,000,000: 3s. Last read position: chr15:23,687,028
INFO 2026-06-03 21:05:10 SinglePassSamProgram Processed 352,000,000 records. Elapsed time: 01:10:16s. Time for last 1,000,000: 23s. Last read position: chr15:32,731,624
INFO 2026-06-03 21:05:17 SinglePassSamProgram Processed 353,000,000 records. Elapsed time: 01:10:23s. Time for last 1,000,000: 6s. Last read position: chr15:39,593,123
INFO 2026-06-03 21:05:25 SinglePassSamProgram Processed 354,000,000 records. Elapsed time: 01:10:31s. Time for last 1,000,000: 8s. Last read position: chr15:41,818,033
INFO 2026-06-03 21:05:34 SinglePassSamProgram Processed 355,000,000 records. Elapsed time: 01:10:41s. Time for last 1,000,000: 9s. Last read position: chr15:43,768,489
INFO 2026-06-03 21:05:42 SinglePassSamProgram Processed 356,000,000 records. Elapsed time: 01:10:48s. Time for last 1,000,000: 7s. Last read position: chr15:45,095,881
INFO 2026-06-03 21:05:49 SinglePassSamProgram Processed 357,000,000 records. Elapsed time: 01:10:55s. Time for last 1,000,000: 7s. Last read position: chr15:45,113,058
INFO 2026-06-03 21:05:57 SinglePassSamProgram Processed 358,000,000 records. Elapsed time: 01:11:03s. Time for last 1,000,000: 8s. Last read position: chr15:50,575,044
INFO 2026-06-03 21:06:09 SinglePassSamProgram Processed 359,000,000 records. Elapsed time: 01:11:15s. Time for last 1,000,000: 11s. Last read position: chr15:58,611,845
INFO 2026-06-03 21:06:28 SinglePassSamProgram Processed 360,000,000 records. Elapsed time: 01:11:34s. Time for last 1,000,000: 19s. Last read position: chr15:63,632,727
INFO 2026-06-03 21:06:35 SinglePassSamProgram Processed 361,000,000 records. Elapsed time: 01:11:42s. Time for last 1,000,000: 7s. Last read position: chr15:66,487,273
INFO 2026-06-03 21:06:44 SinglePassSamProgram Processed 362,000,000 records. Elapsed time: 01:11:51s. Time for last 1,000,000: 9s. Last read position: chr15:72,207,163
INFO 2026-06-03 21:06:56 SinglePassSamProgram Processed 363,000,000 records. Elapsed time: 01:12:02s. Time for last 1,000,000: 11s. Last read position: chr15:74,035,895
INFO 2026-06-03 21:07:05 SinglePassSamProgram Processed 364,000,000 records. Elapsed time: 01:12:12s. Time for last 1,000,000: 9s. Last read position: chr15:76,795,289
INFO 2026-06-03 21:07:20 SinglePassSamProgram Processed 365,000,000 records. Elapsed time: 01:12:26s. Time for last 1,000,000: 14s. Last read position: chr15:82,372,498
INFO 2026-06-03 21:07:28 SinglePassSamProgram Processed 366,000,000 records. Elapsed time: 01:12:34s. Time for last 1,000,000: 8s. Last read position: chr15:88,467,761
INFO 2026-06-03 21:07:38 SinglePassSamProgram Processed 367,000,000 records. Elapsed time: 01:12:44s. Time for last 1,000,000: 9s. Last read position: chr15:90,904,298
INFO 2026-06-03 21:07:47 SinglePassSamProgram Processed 368,000,000 records. Elapsed time: 01:12:54s. Time for last 1,000,000: 9s. Last read position: chr16:16,313
INFO 2026-06-03 21:07:56 SinglePassSamProgram Processed 369,000,000 records. Elapsed time: 01:13:03s. Time for last 1,000,000: 9s. Last read position: chr16:1,241,848
INFO 2026-06-03 21:08:15 SinglePassSamProgram Processed 370,000,000 records. Elapsed time: 01:13:21s. Time for last 1,000,000: 18s. Last read position: chr16:2,099,973
INFO 2026-06-03 21:08:28 SinglePassSamProgram Processed 371,000,000 records. Elapsed time: 01:13:35s. Time for last 1,000,000: 13s. Last read position: chr16:2,765,264
INFO 2026-06-03 21:08:39 SinglePassSamProgram Processed 372,000,000 records. Elapsed time: 01:13:46s. Time for last 1,000,000: 11s. Last read position: chr16:3,727,930
INFO 2026-06-03 21:08:51 SinglePassSamProgram Processed 373,000,000 records. Elapsed time: 01:13:57s. Time for last 1,000,000: 11s. Last read position: chr16:8,859,201
INFO 2026-06-03 21:09:00 SinglePassSamProgram Processed 374,000,000 records. Elapsed time: 01:14:07s. Time for last 1,000,000: 9s. Last read position: chr16:11,927,747
INFO 2026-06-03 21:09:06 SinglePassSamProgram Processed 375,000,000 records. Elapsed time: 01:14:12s. Time for last 1,000,000: 5s. Last read position: chr16:14,975,106
INFO 2026-06-03 21:09:23 SinglePassSamProgram Processed 376,000,000 records. Elapsed time: 01:14:30s. Time for last 1,000,000: 17s. Last read position: chr16:15,759,614
INFO 2026-06-03 21:09:32 SinglePassSamProgram Processed 377,000,000 records. Elapsed time: 01:14:38s. Time for last 1,000,000: 8s. Last read position: chr16:16,369,417
INFO 2026-06-03 21:09:34 SinglePassSamProgram Processed 378,000,000 records. Elapsed time: 01:14:40s. Time for last 1,000,000: 2s. Last read position: chr16:18,519,511
INFO 2026-06-03 21:09:43 SinglePassSamProgram Processed 379,000,000 records. Elapsed time: 01:14:50s. Time for last 1,000,000: 9s. Last read position: chr16:21,403,285
INFO 2026-06-03 21:09:46 SinglePassSamProgram Processed 380,000,000 records. Elapsed time: 01:14:52s. Time for last 1,000,000: 2s. Last read position: chr16:21,843,693
INFO 2026-06-03 21:09:50 SinglePassSamProgram Processed 381,000,000 records. Elapsed time: 01:14:57s. Time for last 1,000,000: 4s. Last read position: chr16:22,536,170
INFO 2026-06-03 21:09:58 SinglePassSamProgram Processed 382,000,000 records. Elapsed time: 01:15:05s. Time for last 1,000,000: 7s. Last read position: chr16:28,107,588
INFO 2026-06-03 21:10:11 SinglePassSamProgram Processed 383,000,000 records. Elapsed time: 01:15:17s. Time for last 1,000,000: 12s. Last read position: chr16:29,076,670
INFO 2026-06-03 21:10:12 SinglePassSamProgram Processed 384,000,000 records. Elapsed time: 01:15:19s. Time for last 1,000,000: 1s. Last read position: chr16:29,806,865
INFO 2026-06-03 21:10:21 SinglePassSamProgram Processed 385,000,000 records. Elapsed time: 01:15:28s. Time for last 1,000,000: 9s. Last read position: chr16:30,193,544
INFO 2026-06-03 21:10:25 SinglePassSamProgram Processed 386,000,000 records. Elapsed time: 01:15:32s. Time for last 1,000,000: 4s. Last read position: chr16:30,707,673
INFO 2026-06-03 21:10:32 SinglePassSamProgram Processed 387,000,000 records. Elapsed time: 01:15:38s. Time for last 1,000,000: 6s. Last read position: chr16:31,185,119
INFO 2026-06-03 21:10:41 SinglePassSamProgram Processed 388,000,000 records. Elapsed time: 01:15:47s. Time for last 1,000,000: 8s. Last read position: chr16:48,562,107
INFO 2026-06-03 21:10:49 SinglePassSamProgram Processed 389,000,000 records. Elapsed time: 01:15:56s. Time for last 1,000,000: 8s. Last read position: chr16:55,509,192
INFO 2026-06-03 21:11:00 SinglePassSamProgram Processed 390,000,000 records. Elapsed time: 01:16:06s. Time for last 1,000,000: 10s. Last read position: chr16:57,651,603
INFO 2026-06-03 21:11:12 SinglePassSamProgram Processed 391,000,000 records. Elapsed time: 01:16:18s. Time for last 1,000,000: 11s. Last read position: chr16:67,230,479
INFO 2026-06-03 21:11:23 SinglePassSamProgram Processed 392,000,000 records. Elapsed time: 01:16:29s. Time for last 1,000,000: 11s. Last read position: chr16:68,878,167
INFO 2026-06-03 21:11:33 SinglePassSamProgram Processed 393,000,000 records. Elapsed time: 01:16:40s. Time for last 1,000,000: 10s. Last read position: chr16:70,681,002
INFO 2026-06-03 21:11:42 SinglePassSamProgram Processed 394,000,000 records. Elapsed time: 01:16:48s. Time for last 1,000,000: 8s. Last read position: chr16:75,568,105
INFO 2026-06-03 21:11:49 SinglePassSamProgram Processed 395,000,000 records. Elapsed time: 01:16:55s. Time for last 1,000,000: 6s. Last read position: chr16:84,877,436
INFO 2026-06-03 21:11:54 SinglePassSamProgram Processed 396,000,000 records. Elapsed time: 01:17:00s. Time for last 1,000,000: 4s. Last read position: chr16:88,655,268
INFO 2026-06-03 21:12:08 SinglePassSamProgram Processed 397,000,000 records. Elapsed time: 01:17:14s. Time for last 1,000,000: 13s. Last read position: chr16:89,710,922
INFO 2026-06-03 21:12:21 SinglePassSamProgram Processed 398,000,000 records. Elapsed time: 01:17:27s. Time for last 1,000,000: 13s. Last read position: chr17:1,365,032
INFO 2026-06-03 21:12:31 SinglePassSamProgram Processed 399,000,000 records. Elapsed time: 01:17:38s. Time for last 1,000,000: 10s. Last read position: chr17:2,057,625
INFO 2026-06-03 21:12:40 SinglePassSamProgram Processed 400,000,000 records. Elapsed time: 01:17:47s. Time for last 1,000,000: 9s. Last read position: chr17:4,539,456
INFO 2026-06-03 21:12:49 SinglePassSamProgram Processed 401,000,000 records. Elapsed time: 01:17:55s. Time for last 1,000,000: 8s. Last read position: chr17:5,023,656
INFO 2026-06-03 21:12:59 SinglePassSamProgram Processed 402,000,000 records. Elapsed time: 01:18:05s. Time for last 1,000,000: 9s. Last read position: chr17:7,309,672
INFO 2026-06-03 21:13:06 SinglePassSamProgram Processed 403,000,000 records. Elapsed time: 01:18:12s. Time for last 1,000,000: 7s. Last read position: chr17:7,574,560
INFO 2026-06-03 21:13:19 SinglePassSamProgram Processed 404,000,000 records. Elapsed time: 01:18:25s. Time for last 1,000,000: 12s. Last read position: chr17:7,930,621
INFO 2026-06-03 21:13:28 SinglePassSamProgram Processed 405,000,000 records. Elapsed time: 01:18:34s. Time for last 1,000,000: 8s. Last read position: chr17:16,058,577
INFO 2026-06-03 21:13:38 SinglePassSamProgram Processed 406,000,000 records. Elapsed time: 01:18:44s. Time for last 1,000,000: 10s. Last read position: chr17:17,813,379
INFO 2026-06-03 21:13:47 SinglePassSamProgram Processed 407,000,000 records. Elapsed time: 01:18:54s. Time for last 1,000,000: 9s. Last read position: chr17:20,227,604
INFO 2026-06-03 21:13:55 SinglePassSamProgram Processed 408,000,000 records. Elapsed time: 01:19:02s. Time for last 1,000,000: 8s. Last read position: chr17:28,635,391
INFO 2026-06-03 21:14:05 SinglePassSamProgram Processed 409,000,000 records. Elapsed time: 01:19:12s. Time for last 1,000,000: 9s. Last read position: chr17:29,632,581
INFO 2026-06-03 21:14:17 SinglePassSamProgram Processed 410,000,000 records. Elapsed time: 01:19:23s. Time for last 1,000,000: 11s. Last read position: chr17:34,256,794
INFO 2026-06-03 21:14:24 SinglePassSamProgram Processed 411,000,000 records. Elapsed time: 01:19:30s. Time for last 1,000,000: 7s. Last read position: chr17:36,297,347
INFO 2026-06-03 21:14:31 SinglePassSamProgram Processed 412,000,000 records. Elapsed time: 01:19:37s. Time for last 1,000,000: 6s. Last read position: chr17:38,467,264
INFO 2026-06-03 21:14:37 SinglePassSamProgram Processed 413,000,000 records. Elapsed time: 01:19:43s. Time for last 1,000,000: 5s. Last read position: chr17:39,653,657
INFO 2026-06-03 21:14:56 SinglePassSamProgram Processed 414,000,000 records. Elapsed time: 01:20:03s. Time for last 1,000,000: 19s. Last read position: chr17:40,094,963
INFO 2026-06-03 21:15:02 SinglePassSamProgram Processed 415,000,000 records. Elapsed time: 01:20:09s. Time for last 1,000,000: 5s. Last read position: chr17:41,690,837
INFO 2026-06-03 21:15:27 SinglePassSamProgram Processed 416,000,000 records. Elapsed time: 01:20:34s. Time for last 1,000,000: 25s. Last read position: chr17:42,404,951
INFO 2026-06-03 21:15:35 SinglePassSamProgram Processed 417,000,000 records. Elapsed time: 01:20:41s. Time for last 1,000,000: 7s. Last read position: chr17:44,091,133
INFO 2026-06-03 21:15:45 SinglePassSamProgram Processed 418,000,000 records. Elapsed time: 01:20:51s. Time for last 1,000,000: 10s. Last read position: chr17:45,405,976
INFO 2026-06-03 21:15:56 SinglePassSamProgram Processed 419,000,000 records. Elapsed time: 01:21:02s. Time for last 1,000,000: 10s. Last read position: chr17:47,813,391
INFO 2026-06-03 21:16:03 SinglePassSamProgram Processed 420,000,000 records. Elapsed time: 01:21:10s. Time for last 1,000,000: 7s. Last read position: chr17:50,186,370
INFO 2026-06-03 21:16:09 SinglePassSamProgram Processed 421,000,000 records. Elapsed time: 01:21:15s. Time for last 1,000,000: 5s. Last read position: chr17:50,192,663
INFO 2026-06-03 21:16:19 SinglePassSamProgram Processed 422,000,000 records. Elapsed time: 01:21:26s. Time for last 1,000,000: 10s. Last read position: chr17:50,199,273
INFO 2026-06-03 21:16:29 SinglePassSamProgram Processed 423,000,000 records. Elapsed time: 01:21:35s. Time for last 1,000,000: 9s. Last read position: chr17:57,873,598
INFO 2026-06-03 21:16:39 SinglePassSamProgram Processed 424,000,000 records. Elapsed time: 01:21:45s. Time for last 1,000,000: 9s. Last read position: chr17:59,685,100
INFO 2026-06-03 21:16:49 SinglePassSamProgram Processed 425,000,000 records. Elapsed time: 01:21:56s. Time for last 1,000,000: 10s. Last read position: chr17:63,714,099
INFO 2026-06-03 21:17:02 SinglePassSamProgram Processed 426,000,000 records. Elapsed time: 01:22:08s. Time for last 1,000,000: 12s. Last read position: chr17:65,549,567
INFO 2026-06-03 21:17:14 SinglePassSamProgram Processed 427,000,000 records. Elapsed time: 01:22:20s. Time for last 1,000,000: 12s. Last read position: chr17:68,983,766
INFO 2026-06-03 21:17:23 SinglePassSamProgram Processed 428,000,000 records. Elapsed time: 01:22:29s. Time for last 1,000,000: 8s. Last read position: chr17:75,563,088
INFO 2026-06-03 21:17:37 SinglePassSamProgram Processed 429,000,000 records. Elapsed time: 01:22:44s. Time for last 1,000,000: 14s. Last read position: chr17:76,008,940
INFO 2026-06-03 21:17:49 SinglePassSamProgram Processed 430,000,000 records. Elapsed time: 01:22:56s. Time for last 1,000,000: 12s. Last read position: chr17:78,103,421
INFO 2026-06-03 21:17:57 SinglePassSamProgram Processed 431,000,000 records. Elapsed time: 01:23:04s. Time for last 1,000,000: 7s. Last read position: chr17:80,140,129
INFO 2026-06-03 21:18:15 SinglePassSamProgram Processed 432,000,000 records. Elapsed time: 01:23:21s. Time for last 1,000,000: 17s. Last read position: chr17:80,363,258
INFO 2026-06-03 21:18:32 SinglePassSamProgram Processed 433,000,000 records. Elapsed time: 01:23:38s. Time for last 1,000,000: 17s. Last read position: chr17:81,681,862
INFO 2026-06-03 21:19:01 SinglePassSamProgram Processed 434,000,000 records. Elapsed time: 01:24:07s. Time for last 1,000,000: 28s. Last read position: chr17:82,088,124
INFO 2026-06-03 21:19:14 SinglePassSamProgram Processed 435,000,000 records. Elapsed time: 01:24:20s. Time for last 1,000,000: 12s. Last read position: chr18:2,784,501
INFO 2026-06-03 21:19:27 SinglePassSamProgram Processed 436,000,000 records. Elapsed time: 01:24:34s. Time for last 1,000,000: 13s. Last read position: chr18:9,954,095
INFO 2026-06-03 21:19:37 SinglePassSamProgram Processed 437,000,000 records. Elapsed time: 01:24:44s. Time for last 1,000,000: 10s. Last read position: chr18:26,032,415
INFO 2026-06-03 21:19:51 SinglePassSamProgram Processed 438,000,000 records. Elapsed time: 01:24:57s. Time for last 1,000,000: 13s. Last read position: chr18:46,091,742
INFO 2026-06-03 21:20:18 SinglePassSamProgram Processed 439,000,000 records. Elapsed time: 01:25:24s. Time for last 1,000,000: 26s. Last read position: chr18:57,655,224
INFO 2026-06-03 21:20:45 SinglePassSamProgram Processed 440,000,000 records. Elapsed time: 01:25:51s. Time for last 1,000,000: 27s. Last read position: chr18:74,510,959
INFO 2026-06-03 21:21:01 SinglePassSamProgram Processed 441,000,000 records. Elapsed time: 01:26:07s. Time for last 1,000,000: 16s. Last read position: chr19:810,563
INFO 2026-06-03 21:21:15 SinglePassSamProgram Processed 442,000,000 records. Elapsed time: 01:26:22s. Time for last 1,000,000: 14s. Last read position: chr19:1,116,036
INFO 2026-06-03 21:21:35 SinglePassSamProgram Processed 443,000,000 records. Elapsed time: 01:26:41s. Time for last 1,000,000: 19s. Last read position: chr19:1,816,077
INFO 2026-06-03 21:21:47 SinglePassSamProgram Processed 444,000,000 records. Elapsed time: 01:26:53s. Time for last 1,000,000: 12s. Last read position: chr19:2,997,744
INFO 2026-06-03 21:21:59 SinglePassSamProgram Processed 445,000,000 records. Elapsed time: 01:27:05s. Time for last 1,000,000: 11s. Last read position: chr19:4,447,477
INFO 2026-06-03 21:22:13 SinglePassSamProgram Processed 446,000,000 records. Elapsed time: 01:27:20s. Time for last 1,000,000: 14s. Last read position: chr19:5,691,333
INFO 2026-06-03 21:22:28 SinglePassSamProgram Processed 447,000,000 records. Elapsed time: 01:27:34s. Time for last 1,000,000: 14s. Last read position: chr19:6,712,528
INFO 2026-06-03 21:22:45 SinglePassSamProgram Processed 448,000,000 records. Elapsed time: 01:27:51s. Time for last 1,000,000: 17s. Last read position: chr19:7,879,799
INFO 2026-06-03 21:23:08 SinglePassSamProgram Processed 449,000,000 records. Elapsed time: 01:28:15s. Time for last 1,000,000: 23s. Last read position: chr19:8,966,991
INFO 2026-06-03 21:23:33 SinglePassSamProgram Processed 450,000,000 records. Elapsed time: 01:28:39s. Time for last 1,000,000: 24s. Last read position: chr19:10,395,981
INFO 2026-06-03 21:24:14 SinglePassSamProgram Processed 451,000,000 records. Elapsed time: 01:29:20s. Time for last 1,000,000: 41s. Last read position: chr19:11,214,581
INFO 2026-06-03 21:24:29 SinglePassSamProgram Processed 452,000,000 records. Elapsed time: 01:29:36s. Time for last 1,000,000: 15s. Last read position: chr19:12,791,779
INFO 2026-06-03 21:24:43 SinglePassSamProgram Processed 453,000,000 records. Elapsed time: 01:29:49s. Time for last 1,000,000: 13s. Last read position: chr19:14,097,601
INFO 2026-06-03 21:24:58 SinglePassSamProgram Processed 454,000,000 records. Elapsed time: 01:30:04s. Time for last 1,000,000: 14s. Last read position: chr19:15,238,828
INFO 2026-06-03 21:25:17 SinglePassSamProgram Processed 455,000,000 records. Elapsed time: 01:30:24s. Time for last 1,000,000: 19s. Last read position: chr19:16,111,967
INFO 2026-06-03 21:25:34 SinglePassSamProgram Processed 456,000,000 records. Elapsed time: 01:30:41s. Time for last 1,000,000: 16s. Last read position: chr19:17,578,033
INFO 2026-06-03 21:25:44 SinglePassSamProgram Processed 457,000,000 records. Elapsed time: 01:30:50s. Time for last 1,000,000: 9s. Last read position: chr19:18,431,817
INFO 2026-06-03 21:25:58 SinglePassSamProgram Processed 458,000,000 records. Elapsed time: 01:31:04s. Time for last 1,000,000: 13s. Last read position: chr19:19,528,079
INFO 2026-06-03 21:26:09 SinglePassSamProgram Processed 459,000,000 records. Elapsed time: 01:31:15s. Time for last 1,000,000: 10s. Last read position: chr19:34,399,565
INFO 2026-06-03 21:26:25 SinglePassSamProgram Processed 460,000,000 records. Elapsed time: 01:31:31s. Time for last 1,000,000: 16s. Last read position: chr19:35,738,282
INFO 2026-06-03 21:26:40 SinglePassSamProgram Processed 461,000,000 records. Elapsed time: 01:31:46s. Time for last 1,000,000: 15s. Last read position: chr19:38,632,429
INFO 2026-06-03 21:26:54 SinglePassSamProgram Processed 462,000,000 records. Elapsed time: 01:32:00s. Time for last 1,000,000: 13s. Last read position: chr19:39,433,519
INFO 2026-06-03 21:27:03 SinglePassSamProgram Processed 463,000,000 records. Elapsed time: 01:32:09s. Time for last 1,000,000: 9s. Last read position: chr19:39,895,933
INFO 2026-06-03 21:27:22 SinglePassSamProgram Processed 464,000,000 records. Elapsed time: 01:32:28s. Time for last 1,000,000: 18s. Last read position: chr19:40,605,774
INFO 2026-06-03 21:27:51 SinglePassSamProgram Processed 465,000,000 records. Elapsed time: 01:32:57s. Time for last 1,000,000: 28s. Last read position: chr19:41,708,755
INFO 2026-06-03 21:28:05 SinglePassSamProgram Processed 466,000,000 records. Elapsed time: 01:33:11s. Time for last 1,000,000: 13s. Last read position: chr19:42,287,160
INFO 2026-06-03 21:28:18 SinglePassSamProgram Processed 467,000,000 records. Elapsed time: 01:33:25s. Time for last 1,000,000: 13s. Last read position: chr19:44,748,817
INFO 2026-06-03 21:28:29 SinglePassSamProgram Processed 468,000,000 records. Elapsed time: 01:33:35s. Time for last 1,000,000: 10s. Last read position: chr19:45,524,632
INFO 2026-06-03 21:28:41 SinglePassSamProgram Processed 469,000,000 records. Elapsed time: 01:33:47s. Time for last 1,000,000: 12s. Last read position: chr19:47,072,019
INFO 2026-06-03 21:28:53 SinglePassSamProgram Processed 470,000,000 records. Elapsed time: 01:33:59s. Time for last 1,000,000: 12s. Last read position: chr19:48,800,188
INFO 2026-06-03 21:29:08 SinglePassSamProgram Processed 471,000,000 records. Elapsed time: 01:34:14s. Time for last 1,000,000: 14s. Last read position: chr19:49,497,580
INFO 2026-06-03 21:29:23 SinglePassSamProgram Processed 472,000,000 records. Elapsed time: 01:34:29s. Time for last 1,000,000: 14s. Last read position: chr19:49,890,454
INFO 2026-06-03 21:29:39 SinglePassSamProgram Processed 473,000,000 records. Elapsed time: 01:34:45s. Time for last 1,000,000: 15s. Last read position: chr19:52,225,738
INFO 2026-06-03 21:29:45 SinglePassSamProgram Processed 474,000,000 records. Elapsed time: 01:34:51s. Time for last 1,000,000: 6s. Last read position: chr19:54,276,861
INFO 2026-06-03 21:29:54 SinglePassSamProgram Processed 475,000,000 records. Elapsed time: 01:35:00s. Time for last 1,000,000: 8s. Last read position: chr19:55,245,557
INFO 2026-06-03 21:30:00 SinglePassSamProgram Processed 476,000,000 records. Elapsed time: 01:35:06s. Time for last 1,000,000: 6s. Last read position: chr19:57,747,005
INFO 2026-06-03 21:30:12 SinglePassSamProgram Processed 477,000,000 records. Elapsed time: 01:35:19s. Time for last 1,000,000: 12s. Last read position: chr20:489,816
INFO 2026-06-03 21:30:23 SinglePassSamProgram Processed 478,000,000 records. Elapsed time: 01:35:30s. Time for last 1,000,000: 11s. Last read position: chr20:3,784,637
INFO 2026-06-03 21:30:35 SinglePassSamProgram Processed 479,000,000 records. Elapsed time: 01:35:42s. Time for last 1,000,000: 11s. Last read position: chr20:17,614,736
INFO 2026-06-03 21:30:51 SinglePassSamProgram Processed 480,000,000 records. Elapsed time: 01:35:57s. Time for last 1,000,000: 15s. Last read position: chr20:23,633,847
INFO 2026-06-03 21:31:04 SinglePassSamProgram Processed 481,000,000 records. Elapsed time: 01:36:11s. Time for last 1,000,000: 13s. Last read position: chr20:33,848,525
INFO 2026-06-03 21:31:27 SinglePassSamProgram Processed 482,000,000 records. Elapsed time: 01:36:34s. Time for last 1,000,000: 23s. Last read position: chr20:35,858,309
INFO 2026-06-03 21:31:40 SinglePassSamProgram Processed 483,000,000 records. Elapsed time: 01:36:46s. Time for last 1,000,000: 12s. Last read position: chr20:38,541,060
INFO 2026-06-03 21:31:50 SinglePassSamProgram Processed 484,000,000 records. Elapsed time: 01:36:56s. Time for last 1,000,000: 9s. Last read position: chr20:45,363,668
INFO 2026-06-03 21:32:07 SinglePassSamProgram Processed 485,000,000 records. Elapsed time: 01:37:13s. Time for last 1,000,000: 17s. Last read position: chr20:48,720,476
INFO 2026-06-03 21:32:14 SinglePassSamProgram Processed 486,000,000 records. Elapsed time: 01:37:20s. Time for last 1,000,000: 6s. Last read position: chr20:51,690,783
INFO 2026-06-03 21:32:39 SinglePassSamProgram Processed 487,000,000 records. Elapsed time: 01:37:46s. Time for last 1,000,000: 25s. Last read position: chr20:59,994,330
INFO 2026-06-03 21:32:48 SinglePassSamProgram Processed 488,000,000 records. Elapsed time: 01:37:54s. Time for last 1,000,000: 8s. Last read position: chr20:62,909,819
INFO 2026-06-03 21:32:54 SinglePassSamProgram Processed 489,000,000 records. Elapsed time: 01:38:00s. Time for last 1,000,000: 5s. Last read position: chr21:5,022,238
INFO 2026-06-03 21:32:55 SinglePassSamProgram Processed 490,000,000 records. Elapsed time: 01:38:02s. Time for last 1,000,000: 1s. Last read position: chr21:8,216,921
INFO 2026-06-03 21:32:56 SinglePassSamProgram Processed 491,000,000 records. Elapsed time: 01:38:02s. Time for last 1,000,000: 0s. Last read position: chr21:8,260,313
INFO 2026-06-03 21:32:57 SinglePassSamProgram Processed 492,000,000 records. Elapsed time: 01:38:03s. Time for last 1,000,000: 1s. Last read position: chr21:8,411,289
INFO 2026-06-03 21:32:58 SinglePassSamProgram Processed 493,000,000 records. Elapsed time: 01:38:04s. Time for last 1,000,000: 0s. Last read position: chr21:8,444,592
INFO 2026-06-03 21:33:06 SinglePassSamProgram Processed 494,000,000 records. Elapsed time: 01:38:12s. Time for last 1,000,000: 8s. Last read position: chr21:29,048,761
INFO 2026-06-03 21:33:16 SinglePassSamProgram Processed 495,000,000 records. Elapsed time: 01:38:23s. Time for last 1,000,000: 10s. Last read position: chr21:33,554,021
INFO 2026-06-03 21:33:40 SinglePassSamProgram Processed 496,000,000 records. Elapsed time: 01:38:47s. Time for last 1,000,000: 23s. Last read position: chr21:38,818,550
INFO 2026-06-03 21:34:13 SinglePassSamProgram Processed 497,000,000 records. Elapsed time: 01:39:19s. Time for last 1,000,000: 32s. Last read position: chr21:43,659,647
INFO 2026-06-03 21:34:21 SinglePassSamProgram Processed 498,000,000 records. Elapsed time: 01:39:27s. Time for last 1,000,000: 7s. Last read position: chr21:45,494,897
INFO 2026-06-03 21:34:31 SinglePassSamProgram Processed 499,000,000 records. Elapsed time: 01:39:38s. Time for last 1,000,000: 10s. Last read position: chr21:46,346,753
INFO 2026-06-03 21:34:41 SinglePassSamProgram Processed 500,000,000 records. Elapsed time: 01:39:47s. Time for last 1,000,000: 9s. Last read position: chr22:20,140,886
INFO 2026-06-03 21:34:56 SinglePassSamProgram Processed 501,000,000 records. Elapsed time: 01:40:02s. Time for last 1,000,000: 15s. Last read position: chr22:23,290,374
INFO 2026-06-03 21:35:10 SinglePassSamProgram Processed 502,000,000 records. Elapsed time: 01:40:16s. Time for last 1,000,000: 13s. Last read position: chr22:28,795,636
INFO 2026-06-03 21:35:27 SinglePassSamProgram Processed 503,000,000 records. Elapsed time: 01:40:34s. Time for last 1,000,000: 17s. Last read position: chr22:29,570,456
INFO 2026-06-03 21:35:46 SinglePassSamProgram Processed 504,000,000 records. Elapsed time: 01:40:52s. Time for last 1,000,000: 18s. Last read position: chr22:32,399,648
INFO 2026-06-03 21:35:57 SinglePassSamProgram Processed 505,000,000 records. Elapsed time: 01:41:03s. Time for last 1,000,000: 11s. Last read position: chr22:36,292,217
INFO 2026-06-03 21:36:06 SinglePassSamProgram Processed 506,000,000 records. Elapsed time: 01:41:13s. Time for last 1,000,000: 9s. Last read position: chr22:37,568,315
INFO 2026-06-03 21:36:19 SinglePassSamProgram Processed 507,000,000 records. Elapsed time: 01:41:26s. Time for last 1,000,000: 13s. Last read position: chr22:38,506,127
INFO 2026-06-03 21:36:27 SinglePassSamProgram Processed 508,000,000 records. Elapsed time: 01:41:33s. Time for last 1,000,000: 7s. Last read position: chr22:40,418,821
INFO 2026-06-03 21:36:36 SinglePassSamProgram Processed 509,000,000 records. Elapsed time: 01:41:43s. Time for last 1,000,000: 9s. Last read position: chr22:42,068,482
INFO 2026-06-03 21:36:42 SinglePassSamProgram Processed 510,000,000 records. Elapsed time: 01:41:49s. Time for last 1,000,000: 6s. Last read position: chr22:45,541,361
INFO 2026-06-03 21:36:52 SinglePassSamProgram Processed 511,000,000 records. Elapsed time: 01:41:58s. Time for last 1,000,000: 9s. Last read position: chr22:50,250,442
INFO 2026-06-03 21:37:03 SinglePassSamProgram Processed 512,000,000 records. Elapsed time: 01:42:09s. Time for last 1,000,000: 10s. Last read position: chr22:50,530,460
INFO 2026-06-03 21:37:06 SinglePassSamProgram Processed 513,000,000 records. Elapsed time: 01:42:12s. Time for last 1,000,000: 3s. Last read position: chrX:3,324,418
INFO 2026-06-03 21:37:13 SinglePassSamProgram Processed 514,000,000 records. Elapsed time: 01:42:19s. Time for last 1,000,000: 6s. Last read position: chrX:20,138,567
INFO 2026-06-03 21:37:26 SinglePassSamProgram Processed 515,000,000 records. Elapsed time: 01:42:32s. Time for last 1,000,000: 12s. Last read position: chrX:40,600,818
INFO 2026-06-03 21:37:49 SinglePassSamProgram Processed 516,000,000 records. Elapsed time: 01:42:56s. Time for last 1,000,000: 23s. Last read position: chrX:47,247,184
INFO 2026-06-03 21:37:58 SinglePassSamProgram Processed 517,000,000 records. Elapsed time: 01:43:04s. Time for last 1,000,000: 8s. Last read position: chrX:49,071,889
INFO 2026-06-03 21:38:09 SinglePassSamProgram Processed 518,000,000 records. Elapsed time: 01:43:15s. Time for last 1,000,000: 11s. Last read position: chrX:53,583,821
INFO 2026-06-03 21:38:23 SinglePassSamProgram Processed 519,000,000 records. Elapsed time: 01:43:30s. Time for last 1,000,000: 14s. Last read position: chrX:69,162,858
INFO 2026-06-03 21:38:35 SinglePassSamProgram Processed 520,000,000 records. Elapsed time: 01:43:42s. Time for last 1,000,000: 11s. Last read position: chrX:74,521,122
INFO 2026-06-03 21:38:44 SinglePassSamProgram Processed 521,000,000 records. Elapsed time: 01:43:51s. Time for last 1,000,000: 8s. Last read position: chrX:101,391,551
INFO 2026-06-03 21:38:52 SinglePassSamProgram Processed 522,000,000 records. Elapsed time: 01:43:59s. Time for last 1,000,000: 8s. Last read position: chrX:116,445,455
INFO 2026-06-03 21:39:01 SinglePassSamProgram Processed 523,000,000 records. Elapsed time: 01:44:07s. Time for last 1,000,000: 8s. Last read position: chrX:133,985,388
INFO 2026-06-03 21:39:08 SinglePassSamProgram Processed 524,000,000 records. Elapsed time: 01:44:14s. Time for last 1,000,000: 6s. Last read position: chrX:153,798,127
INFO 2026-06-03 21:39:24 SinglePassSamProgram Processed 525,000,000 records. Elapsed time: 01:44:31s. Time for last 1,000,000: 16s. Last read position: chrX:154,361,356
INFO 2026-06-03 21:39:48 SinglePassSamProgram Processed 526,000,000 records. Elapsed time: 01:44:55s. Time for last 1,000,000: 24s. Last read position: chrX:154,957,059
INFO 2026-06-03 21:39:54 SinglePassSamProgram Processed 527,000,000 records. Elapsed time: 01:45:00s. Time for last 1,000,000: 5s. Last read position: GL000220.1:111,362
INFO 2026-06-03 21:39:55 SinglePassSamProgram Processed 528,000,000 records. Elapsed time: 01:45:01s. Time for last 1,000,000: 0s. Last read position: GL000220.1:150,438
INFO 2026-06-03 21:39:55 SinglePassSamProgram Processed 529,000,000 records. Elapsed time: 01:45:02s. Time for last 1,000,000: 0s. Last read position: GL000220.1:160,841
INFO 2026-06-03 21:39:56 SinglePassSamProgram Processed 530,000,000 records. Elapsed time: 01:45:02s. Time for last 1,000,000: 0s. Last read position: KI270733.1:133,613
INFO 2026-06-03 21:39:57 SinglePassSamProgram Processed 531,000,000 records. Elapsed time: 01:45:03s. Time for last 1,000,000: 0s. Last read position: KI270733.1:178,250
INFO 2026-06-03 21:39:57 SinglePassSamProgram Processed 532,000,000 records. Elapsed time: 01:45:04s. Time for last 1,000,000: 0s. Last read position: */*
INFO 2026-06-03 21:39:58 SinglePassSamProgram Processed 533,000,000 records. Elapsed time: 01:45:05s. Time for last 1,000,000: 0s. Last read position: */*
INFO 2026-06-03 21:39:59 SinglePassSamProgram Processed 534,000,000 records. Elapsed time: 01:45:05s. Time for last 1,000,000: 0s. Last read position: */*
[Wed Jun 03 21:40:01 GMT 2026] picard.analysis.CollectRnaSeqMetrics done. Elapsed time: 105.17 minutes.
Runtime.totalMemory()=3096444928