/usr/local/bin/picard: line 5: warning: setlocale: LC_ALL: cannot change locale (en_US.UTF-8): No such file or directory INFO 2026-06-03 19:56:27 RExecutor Executing R script via command: Rscript /tmp/script3923747276870463407.R ERROR 2026-06-03 19:56:27 ProcessExecutor /bin/sh: warning: setlocale: LC_ALL: cannot change locale (en_US.UTF-8) ERROR 2026-06-03 19:56:27 ProcessExecutor sh: warning: setlocale: LC_ALL: cannot change locale (en_US.UTF-8) ERROR 2026-06-03 19:56:27 ProcessExecutor sh: warning: setlocale: LC_ALL: cannot change locale (en_US.UTF-8) ERROR 2026-06-03 19:56:27 ProcessExecutor During startup - Warning messages: ERROR 2026-06-03 19:56:27 ProcessExecutor 1: Setting LC_CTYPE failed, using "C" ERROR 2026-06-03 19:56:27 ProcessExecutor 2: Setting LC_COLLATE failed, using "C" ERROR 2026-06-03 19:56:27 ProcessExecutor 3: Setting LC_TIME failed, using "C" ERROR 2026-06-03 19:56:27 ProcessExecutor 4: Setting LC_MESSAGES failed, using "C" ERROR 2026-06-03 19:56:27 ProcessExecutor 5: Setting LC_MONETARY failed, using "C" ERROR 2026-06-03 19:56:27 ProcessExecutor 6: Setting LC_PAPER failed, using "C" ERROR 2026-06-03 19:56:27 ProcessExecutor 7: Setting LC_MEASUREMENT failed, using "C" INFO 2026-06-03 19:56:27 ProcessExecutor [1] "Checking if R is installed" ERROR 2026-06-03 19:56:27 ProcessExecutor sh: warning: setlocale: LC_ALL: cannot change locale (en_US.UTF-8) Jun 03, 2026 7:56:27 PM com.intel.gkl.NativeLibraryLoader load INFO: Loading libgkl_compression.so from jar:file:/usr/local/share/picard-3.1.0-0/picard.jar!/com/intel/gkl/native/libgkl_compression.so [Wed Jun 03 19:56:27 GMT 2026] CollectInsertSizeMetrics --Histogram_FILE aih-tih-sc-242a7d-R1_A23YTGFLT4_1_collectinsertsize.pdf --INPUT aih-tih-sc-242a7d-R1_A23YTGFLT4_1.Aligned.sortedByCoord.out.bam --OUTPUT aih-tih-sc-242a7d-R1_A23YTGFLT4_1_collectinsertsize.txt --DEVIATIONS 10.0 --MINIMUM_PCT 0.05 --METRIC_ACCUMULATION_LEVEL ALL_READS --INCLUDE_DUPLICATES false --ASSUME_SORTED true --STOP_AFTER 0 --VERBOSITY INFO --QUIET false --VALIDATION_STRINGENCY STRICT --COMPRESSION_LEVEL 5 --MAX_RECORDS_IN_RAM 500000 --CREATE_INDEX false --CREATE_MD5_FILE false --help false --version false --showHidden false --USE_JDK_DEFLATER false --USE_JDK_INFLATER false [Wed Jun 03 19:56:27 GMT 2026] Executing as ?@nf-dcb024a01530ed4a39f7090f1e13cf26-650d2-ckw69 on Linux 6.12.88 amd64; OpenJDK 64-Bit Server VM 20-internal-adhoc..src; Deflater: Intel; Inflater: Intel; Provider GCS is available; Picard version: Version:3.1.0 INFO 2026-06-03 19:56:29 SinglePassSamProgram Processed 1,000,000 records. Elapsed time: 00:00:01s. Time for last 1,000,000: 1s. Last read position: chr1:1,296,218 INFO 2026-06-03 19:56:31 SinglePassSamProgram Processed 2,000,000 records. Elapsed time: 00:00:03s. Time for last 1,000,000: 1s. Last read position: chr1:1,700,288 INFO 2026-06-03 19:56:32 SinglePassSamProgram Processed 3,000,000 records. Elapsed time: 00:00:04s. Time for last 1,000,000: 1s. Last read position: chr1:6,468,282 INFO 2026-06-03 19:56:33 SinglePassSamProgram Processed 4,000,000 records. Elapsed time: 00:00:05s. Time for last 1,000,000: 1s. Last read position: chr1:9,749,495 INFO 2026-06-03 19:56:35 SinglePassSamProgram Processed 5,000,000 records. Elapsed time: 00:00:07s. Time for last 1,000,000: 1s. Last read position: chr1:12,260,975 INFO 2026-06-03 19:56:36 SinglePassSamProgram Processed 6,000,000 records. Elapsed time: 00:00:08s. Time for last 1,000,000: 1s. Last read position: chr1:16,241,177 INFO 2026-06-03 19:56:38 SinglePassSamProgram Processed 7,000,000 records. Elapsed time: 00:00:10s. Time for last 1,000,000: 1s. Last read position: chr1:19,172,867 INFO 2026-06-03 19:56:39 SinglePassSamProgram Processed 8,000,000 records. Elapsed time: 00:00:11s. Time for last 1,000,000: 1s. Last read position: chr1:21,828,952 INFO 2026-06-03 19:56:40 SinglePassSamProgram Processed 9,000,000 records. Elapsed time: 00:00:12s. Time for last 1,000,000: 1s. Last read position: chr1:22,091,488 INFO 2026-06-03 19:56:41 SinglePassSamProgram Processed 10,000,000 records. Elapsed time: 00:00:13s. Time for last 1,000,000: 0s. Last read position: chr1:23,442,238 INFO 2026-06-03 19:56:42 SinglePassSamProgram Processed 11,000,000 records. Elapsed time: 00:00:15s. Time for last 1,000,000: 1s. Last read position: chr1:26,697,153 INFO 2026-06-03 19:56:44 SinglePassSamProgram Processed 12,000,000 records. Elapsed time: 00:00:16s. Time for last 1,000,000: 1s. Last read position: chr1:28,201,266 INFO 2026-06-03 19:56:45 SinglePassSamProgram Processed 13,000,000 records. Elapsed time: 00:00:17s. Time for last 1,000,000: 1s. Last read position: chr1:31,672,458 INFO 2026-06-03 19:56:46 SinglePassSamProgram Processed 14,000,000 records. Elapsed time: 00:00:18s. Time for last 1,000,000: 1s. Last read position: chr1:32,771,067 INFO 2026-06-03 19:56:48 SinglePassSamProgram Processed 15,000,000 records. Elapsed time: 00:00:20s. Time for last 1,000,000: 1s. Last read position: chr1:36,137,254 INFO 2026-06-03 19:56:49 SinglePassSamProgram Processed 16,000,000 records. Elapsed time: 00:00:21s. Time for last 1,000,000: 1s. Last read position: chr1:39,357,578 INFO 2026-06-03 19:56:50 SinglePassSamProgram Processed 17,000,000 records. Elapsed time: 00:00:23s. Time for last 1,000,000: 1s. Last read position: chr1:41,046,443 INFO 2026-06-03 19:56:52 SinglePassSamProgram Processed 18,000,000 records. Elapsed time: 00:00:24s. Time for last 1,000,000: 1s. Last read position: chr1:43,617,511 INFO 2026-06-03 19:56:53 SinglePassSamProgram Processed 19,000,000 records. Elapsed time: 00:00:26s. Time for last 1,000,000: 1s. Last read position: chr1:46,035,466 INFO 2026-06-03 19:56:55 SinglePassSamProgram Processed 20,000,000 records. Elapsed time: 00:00:27s. Time for last 1,000,000: 1s. Last read position: chr1:52,475,250 INFO 2026-06-03 19:56:57 SinglePassSamProgram Processed 21,000,000 records. Elapsed time: 00:00:29s. Time for last 1,000,000: 1s. Last read position: chr1:61,787,757 INFO 2026-06-03 19:56:58 SinglePassSamProgram Processed 22,000,000 records. Elapsed time: 00:00:30s. Time for last 1,000,000: 1s. Last read position: chr1:84,965,695 INFO 2026-06-03 19:57:00 SinglePassSamProgram Processed 23,000,000 records. Elapsed time: 00:00:32s. Time for last 1,000,000: 1s. Last read position: chr1:97,546,348 INFO 2026-06-03 19:57:01 SinglePassSamProgram Processed 24,000,000 records. Elapsed time: 00:00:33s. Time for last 1,000,000: 1s. Last read position: chr1:109,280,905 INFO 2026-06-03 19:57:03 SinglePassSamProgram Processed 25,000,000 records. Elapsed time: 00:00:35s. Time for last 1,000,000: 1s. Last read position: chr1:113,940,659 INFO 2026-06-03 19:57:04 SinglePassSamProgram Processed 26,000,000 records. Elapsed time: 00:00:36s. Time for last 1,000,000: 1s. Last read position: chr1:119,916,090 INFO 2026-06-03 19:57:06 SinglePassSamProgram Processed 27,000,000 records. Elapsed time: 00:00:38s. Time for last 1,000,000: 1s. Last read position: chr1:120,578,717 INFO 2026-06-03 19:57:07 SinglePassSamProgram Processed 28,000,000 records. Elapsed time: 00:00:39s. Time for last 1,000,000: 1s. Last read position: chr1:146,088,491 INFO 2026-06-03 19:57:09 SinglePassSamProgram Processed 29,000,000 records. Elapsed time: 00:00:41s. Time for last 1,000,000: 1s. Last read position: chr1:148,548,992 INFO 2026-06-03 19:57:10 SinglePassSamProgram Processed 30,000,000 records. Elapsed time: 00:00:42s. Time for last 1,000,000: 1s. Last read position: chr1:149,480,794 INFO 2026-06-03 19:57:12 SinglePassSamProgram Processed 31,000,000 records. Elapsed time: 00:00:44s. Time for last 1,000,000: 1s. Last read position: chr1:150,579,220 INFO 2026-06-03 19:57:13 SinglePassSamProgram Processed 32,000,000 records. Elapsed time: 00:00:45s. Time for last 1,000,000: 1s. Last read position: chr1:151,583,123 INFO 2026-06-03 19:57:15 SinglePassSamProgram Processed 33,000,000 records. Elapsed time: 00:00:47s. Time for last 1,000,000: 1s. Last read position: chr1:153,960,606 INFO 2026-06-03 19:57:16 SinglePassSamProgram Processed 34,000,000 records. Elapsed time: 00:00:48s. Time for last 1,000,000: 1s. Last read position: chr1:154,607,936 INFO 2026-06-03 19:57:18 SinglePassSamProgram Processed 35,000,000 records. Elapsed time: 00:00:50s. Time for last 1,000,000: 1s. Last read position: chr1:155,190,055 INFO 2026-06-03 19:57:20 SinglePassSamProgram Processed 36,000,000 records. Elapsed time: 00:00:52s. Time for last 1,000,000: 1s. Last read position: chr1:155,729,075 INFO 2026-06-03 19:57:21 SinglePassSamProgram Processed 37,000,000 records. Elapsed time: 00:00:53s. Time for last 1,000,000: 1s. Last read position: chr1:156,135,965 INFO 2026-06-03 19:57:23 SinglePassSamProgram Processed 38,000,000 records. Elapsed time: 00:00:55s. Time for last 1,000,000: 1s. Last read position: chr1:156,791,760 INFO 2026-06-03 19:57:24 SinglePassSamProgram Processed 39,000,000 records. Elapsed time: 00:00:56s. Time for last 1,000,000: 1s. Last read position: chr1:161,042,596 INFO 2026-06-03 19:57:26 SinglePassSamProgram Processed 40,000,000 records. Elapsed time: 00:00:58s. Time for last 1,000,000: 1s. Last read position: chr1:165,872,946 INFO 2026-06-03 19:57:27 SinglePassSamProgram Processed 41,000,000 records. Elapsed time: 00:00:59s. Time for last 1,000,000: 1s. Last read position: chr1:171,588,488 INFO 2026-06-03 19:57:29 SinglePassSamProgram Processed 42,000,000 records. Elapsed time: 00:01:01s. Time for last 1,000,000: 1s. Last read position: chr1:182,384,465 INFO 2026-06-03 19:57:30 SinglePassSamProgram Processed 43,000,000 records. Elapsed time: 00:01:02s. Time for last 1,000,000: 1s. Last read position: chr1:186,323,686 INFO 2026-06-03 19:57:32 SinglePassSamProgram Processed 44,000,000 records. Elapsed time: 00:01:04s. Time for last 1,000,000: 1s. Last read position: chr1:201,484,711 INFO 2026-06-03 19:57:34 SinglePassSamProgram Processed 45,000,000 records. Elapsed time: 00:01:06s. Time for last 1,000,000: 1s. Last read position: chr1:203,848,383 INFO 2026-06-03 19:57:35 SinglePassSamProgram Processed 46,000,000 records. Elapsed time: 00:01:07s. Time for last 1,000,000: 1s. Last read position: chr1:207,785,629 INFO 2026-06-03 19:57:37 SinglePassSamProgram Processed 47,000,000 records. Elapsed time: 00:01:09s. Time for last 1,000,000: 1s. Last read position: chr1:221,739,189 INFO 2026-06-03 19:57:39 SinglePassSamProgram Processed 48,000,000 records. Elapsed time: 00:01:11s. Time for last 1,000,000: 1s. Last read position: chr1:225,831,885 INFO 2026-06-03 19:57:40 SinglePassSamProgram Processed 49,000,000 records. Elapsed time: 00:01:12s. Time for last 1,000,000: 1s. Last read position: chr1:228,371,454 INFO 2026-06-03 19:57:42 SinglePassSamProgram Processed 50,000,000 records. Elapsed time: 00:01:14s. Time for last 1,000,000: 1s. Last read position: chr1:235,260,695 INFO 2026-06-03 19:57:44 SinglePassSamProgram Processed 51,000,000 records. Elapsed time: 00:01:16s. Time for last 1,000,000: 1s. Last read position: chr1:245,156,453 INFO 2026-06-03 19:57:45 SinglePassSamProgram Processed 52,000,000 records. Elapsed time: 00:01:17s. Time for last 1,000,000: 1s. Last read position: chr2:8,882,481 INFO 2026-06-03 19:57:47 SinglePassSamProgram Processed 53,000,000 records. Elapsed time: 00:01:19s. Time for last 1,000,000: 1s. Last read position: chr2:20,204,075 INFO 2026-06-03 19:57:48 SinglePassSamProgram Processed 54,000,000 records. Elapsed time: 00:01:20s. Time for last 1,000,000: 1s. Last read position: chr2:27,053,025 INFO 2026-06-03 19:57:50 SinglePassSamProgram Processed 55,000,000 records. Elapsed time: 00:01:22s. Time for last 1,000,000: 1s. Last read position: chr2:28,929,645 INFO 2026-06-03 19:57:52 SinglePassSamProgram Processed 56,000,000 records. Elapsed time: 00:01:24s. Time for last 1,000,000: 1s. Last read position: chr2:32,916,264 INFO 2026-06-03 19:57:53 SinglePassSamProgram Processed 57,000,000 records. Elapsed time: 00:01:25s. Time for last 1,000,000: 1s. Last read position: chr2:32,916,406 INFO 2026-06-03 19:57:54 SinglePassSamProgram Processed 58,000,000 records. Elapsed time: 00:01:26s. Time for last 1,000,000: 1s. Last read position: chr2:39,035,242 INFO 2026-06-03 19:57:56 SinglePassSamProgram Processed 59,000,000 records. Elapsed time: 00:01:28s. Time for last 1,000,000: 1s. Last read position: chr2:46,941,584 INFO 2026-06-03 19:57:58 SinglePassSamProgram Processed 60,000,000 records. Elapsed time: 00:01:30s. Time for last 1,000,000: 1s. Last read position: chr2:55,328,301 INFO 2026-06-03 19:57:59 SinglePassSamProgram Processed 61,000,000 records. Elapsed time: 00:01:31s. Time for last 1,000,000: 1s. Last read position: chr2:68,244,936 INFO 2026-06-03 19:58:00 SinglePassSamProgram Processed 62,000,000 records. Elapsed time: 00:01:32s. Time for last 1,000,000: 1s. Last read position: chr2:73,112,464 INFO 2026-06-03 19:58:01 SinglePassSamProgram Processed 63,000,000 records. Elapsed time: 00:01:33s. Time for last 1,000,000: 1s. Last read position: chr2:75,647,209 INFO 2026-06-03 19:58:03 SinglePassSamProgram Processed 64,000,000 records. Elapsed time: 00:01:35s. Time for last 1,000,000: 1s. Last read position: chr2:87,795,696 INFO 2026-06-03 19:58:04 SinglePassSamProgram Processed 65,000,000 records. Elapsed time: 00:01:36s. Time for last 1,000,000: 1s. Last read position: chr2:96,612,299 INFO 2026-06-03 19:58:06 SinglePassSamProgram Processed 66,000,000 records. Elapsed time: 00:01:38s. Time for last 1,000,000: 1s. Last read position: chr2:102,164,863 INFO 2026-06-03 19:58:07 SinglePassSamProgram Processed 67,000,000 records. Elapsed time: 00:01:39s. Time for last 1,000,000: 1s. Last read position: chr2:109,835,978 INFO 2026-06-03 19:58:09 SinglePassSamProgram Processed 68,000,000 records. Elapsed time: 00:01:41s. Time for last 1,000,000: 1s. Last read position: chr2:113,890,235 INFO 2026-06-03 19:58:10 SinglePassSamProgram Processed 69,000,000 records. Elapsed time: 00:01:42s. Time for last 1,000,000: 1s. Last read position: chr2:134,946,125 INFO 2026-06-03 19:58:11 SinglePassSamProgram Processed 70,000,000 records. Elapsed time: 00:01:43s. Time for last 1,000,000: 1s. Last read position: chr2:159,382,713 INFO 2026-06-03 19:58:12 SinglePassSamProgram Processed 71,000,000 records. Elapsed time: 00:01:44s. Time for last 1,000,000: 1s. Last read position: chr2:174,562,007 INFO 2026-06-03 19:58:14 SinglePassSamProgram Processed 72,000,000 records. Elapsed time: 00:01:46s. Time for last 1,000,000: 1s. Last read position: chr2:186,590,343 INFO 2026-06-03 19:58:15 SinglePassSamProgram Processed 73,000,000 records. Elapsed time: 00:01:47s. Time for last 1,000,000: 1s. Last read position: chr2:188,994,298 INFO 2026-06-03 19:58:16 SinglePassSamProgram Processed 74,000,000 records. Elapsed time: 00:01:49s. Time for last 1,000,000: 1s. Last read position: chr2:188,999,550 INFO 2026-06-03 19:58:18 SinglePassSamProgram Processed 75,000,000 records. Elapsed time: 00:01:50s. Time for last 1,000,000: 1s. Last read position: chr2:189,008,035 INFO 2026-06-03 19:58:19 SinglePassSamProgram Processed 76,000,000 records. Elapsed time: 00:01:51s. Time for last 1,000,000: 1s. Last read position: chr2:189,060,737 INFO 2026-06-03 19:58:20 SinglePassSamProgram Processed 77,000,000 records. Elapsed time: 00:01:52s. Time for last 1,000,000: 1s. Last read position: chr2:197,401,868 INFO 2026-06-03 19:58:21 SinglePassSamProgram Processed 78,000,000 records. Elapsed time: 00:01:53s. Time for last 1,000,000: 1s. Last read position: chr2:205,765,557 INFO 2026-06-03 19:58:23 SinglePassSamProgram Processed 79,000,000 records. Elapsed time: 00:01:55s. Time for last 1,000,000: 1s. Last read position: chr2:215,361,995 INFO 2026-06-03 19:58:24 SinglePassSamProgram Processed 80,000,000 records. Elapsed time: 00:01:56s. Time for last 1,000,000: 1s. Last read position: chr2:215,370,378 INFO 2026-06-03 19:58:25 SinglePassSamProgram Processed 81,000,000 records. Elapsed time: 00:01:58s. Time for last 1,000,000: 1s. Last read position: chr2:215,372,295 INFO 2026-06-03 19:58:27 SinglePassSamProgram Processed 82,000,000 records. Elapsed time: 00:01:59s. Time for last 1,000,000: 1s. Last read position: chr2:215,375,654 INFO 2026-06-03 19:58:28 SinglePassSamProgram Processed 83,000,000 records. Elapsed time: 00:02:01s. Time for last 1,000,000: 1s. Last read position: chr2:215,379,251 INFO 2026-06-03 19:58:30 SinglePassSamProgram Processed 84,000,000 records. Elapsed time: 00:02:02s. Time for last 1,000,000: 1s. Last read position: chr2:215,384,882 INFO 2026-06-03 19:58:32 SinglePassSamProgram Processed 85,000,000 records. Elapsed time: 00:02:04s. Time for last 1,000,000: 1s. Last read position: chr2:215,394,606 INFO 2026-06-03 19:58:33 SinglePassSamProgram Processed 86,000,000 records. Elapsed time: 00:02:05s. Time for last 1,000,000: 1s. Last read position: chr2:215,404,617 INFO 2026-06-03 19:58:34 SinglePassSamProgram Processed 87,000,000 records. Elapsed time: 00:02:06s. Time for last 1,000,000: 1s. Last read position: chr2:215,408,361 INFO 2026-06-03 19:58:36 SinglePassSamProgram Processed 88,000,000 records. Elapsed time: 00:02:08s. Time for last 1,000,000: 1s. Last read position: chr2:215,419,241 INFO 2026-06-03 19:58:37 SinglePassSamProgram Processed 89,000,000 records. Elapsed time: 00:02:09s. Time for last 1,000,000: 1s. Last read position: chr2:215,425,151 INFO 2026-06-03 19:58:38 SinglePassSamProgram Processed 90,000,000 records. Elapsed time: 00:02:10s. Time for last 1,000,000: 1s. Last read position: chr2:215,431,918 INFO 2026-06-03 19:58:40 SinglePassSamProgram Processed 91,000,000 records. Elapsed time: 00:02:12s. Time for last 1,000,000: 1s. Last read position: chr2:217,817,805 INFO 2026-06-03 19:58:41 SinglePassSamProgram Processed 92,000,000 records. Elapsed time: 00:02:13s. Time for last 1,000,000: 1s. Last read position: chr2:219,245,972 INFO 2026-06-03 19:58:43 SinglePassSamProgram Processed 93,000,000 records. Elapsed time: 00:02:15s. Time for last 1,000,000: 1s. Last read position: chr2:230,170,730 INFO 2026-06-03 19:58:44 SinglePassSamProgram Processed 94,000,000 records. Elapsed time: 00:02:16s. Time for last 1,000,000: 1s. Last read position: chr2:237,334,641 INFO 2026-06-03 19:58:45 SinglePassSamProgram Processed 95,000,000 records. Elapsed time: 00:02:18s. Time for last 1,000,000: 1s. Last read position: chr2:237,359,361 INFO 2026-06-03 19:58:47 SinglePassSamProgram Processed 96,000,000 records. Elapsed time: 00:02:19s. Time for last 1,000,000: 1s. Last read position: chr2:237,381,056 INFO 2026-06-03 19:58:49 SinglePassSamProgram Processed 97,000,000 records. Elapsed time: 00:02:21s. Time for last 1,000,000: 1s. Last read position: chr2:241,229,476 INFO 2026-06-03 19:58:50 SinglePassSamProgram Processed 98,000,000 records. Elapsed time: 00:02:22s. Time for last 1,000,000: 1s. Last read position: chr3:9,445,078 INFO 2026-06-03 19:58:52 SinglePassSamProgram Processed 99,000,000 records. Elapsed time: 00:02:24s. Time for last 1,000,000: 1s. Last read position: chr3:12,935,474 INFO 2026-06-03 19:58:53 SinglePassSamProgram Processed 100,000,000 records. Elapsed time: 00:02:25s. Time for last 1,000,000: 1s. Last read position: chr3:18,394,817 INFO 2026-06-03 19:58:54 SinglePassSamProgram Processed 101,000,000 records. Elapsed time: 00:02:26s. Time for last 1,000,000: 1s. Last read position: chr3:37,286,031 INFO 2026-06-03 19:58:56 SinglePassSamProgram Processed 102,000,000 records. Elapsed time: 00:02:28s. Time for last 1,000,000: 1s. Last read position: chr3:42,658,859 INFO 2026-06-03 19:58:57 SinglePassSamProgram Processed 103,000,000 records. Elapsed time: 00:02:29s. Time for last 1,000,000: 1s. Last read position: chr3:47,124,010 INFO 2026-06-03 19:58:59 SinglePassSamProgram Processed 104,000,000 records. Elapsed time: 00:02:31s. Time for last 1,000,000: 1s. Last read position: chr3:48,591,698 INFO 2026-06-03 19:59:00 SinglePassSamProgram Processed 105,000,000 records. Elapsed time: 00:02:32s. Time for last 1,000,000: 1s. Last read position: chr3:49,298,617 INFO 2026-06-03 19:59:01 SinglePassSamProgram Processed 106,000,000 records. Elapsed time: 00:02:34s. Time for last 1,000,000: 1s. Last read position: chr3:51,389,011 INFO 2026-06-03 19:59:03 SinglePassSamProgram Processed 107,000,000 records. Elapsed time: 00:02:35s. Time for last 1,000,000: 1s. Last read position: chr3:52,514,458 INFO 2026-06-03 19:59:05 SinglePassSamProgram Processed 108,000,000 records. Elapsed time: 00:02:37s. Time for last 1,000,000: 1s. Last read position: chr3:58,150,126 INFO 2026-06-03 19:59:06 SinglePassSamProgram Processed 109,000,000 records. Elapsed time: 00:02:38s. Time for last 1,000,000: 1s. Last read position: chr3:75,736,751 INFO 2026-06-03 19:59:07 SinglePassSamProgram Processed 110,000,000 records. Elapsed time: 00:02:40s. Time for last 1,000,000: 1s. Last read position: chr3:100,842,014 INFO 2026-06-03 19:59:09 SinglePassSamProgram Processed 111,000,000 records. Elapsed time: 00:02:41s. Time for last 1,000,000: 1s. Last read position: chr3:112,638,555 INFO 2026-06-03 19:59:11 SinglePassSamProgram Processed 112,000,000 records. Elapsed time: 00:02:43s. Time for last 1,000,000: 1s. Last read position: chr3:119,708,640 INFO 2026-06-03 19:59:12 SinglePassSamProgram Processed 113,000,000 records. Elapsed time: 00:02:44s. Time for last 1,000,000: 1s. Last read position: chr3:123,700,323 INFO 2026-06-03 19:59:14 SinglePassSamProgram Processed 114,000,000 records. Elapsed time: 00:02:46s. Time for last 1,000,000: 1s. Last read position: chr3:127,692,121 INFO 2026-06-03 19:59:15 SinglePassSamProgram Processed 115,000,000 records. Elapsed time: 00:02:48s. Time for last 1,000,000: 1s. Last read position: chr3:129,606,468 INFO 2026-06-03 19:59:17 SinglePassSamProgram Processed 116,000,000 records. Elapsed time: 00:02:49s. Time for last 1,000,000: 1s. Last read position: chr3:138,497,973 INFO 2026-06-03 19:59:18 SinglePassSamProgram Processed 117,000,000 records. Elapsed time: 00:02:51s. Time for last 1,000,000: 1s. Last read position: chr3:149,542,356 INFO 2026-06-03 19:59:20 SinglePassSamProgram Processed 118,000,000 records. Elapsed time: 00:02:52s. Time for last 1,000,000: 1s. Last read position: chr3:159,764,816 INFO 2026-06-03 19:59:21 SinglePassSamProgram Processed 119,000,000 records. Elapsed time: 00:02:53s. Time for last 1,000,000: 1s. Last read position: chr3:175,755,229 INFO 2026-06-03 19:59:23 SinglePassSamProgram Processed 120,000,000 records. Elapsed time: 00:02:55s. Time for last 1,000,000: 1s. Last read position: chr3:184,245,248 INFO 2026-06-03 19:59:24 SinglePassSamProgram Processed 121,000,000 records. Elapsed time: 00:02:57s. Time for last 1,000,000: 1s. Last read position: chr3:187,042,974 INFO 2026-06-03 19:59:26 SinglePassSamProgram Processed 122,000,000 records. Elapsed time: 00:02:58s. Time for last 1,000,000: 1s. Last read position: chr3:194,137,998 INFO 2026-06-03 19:59:27 SinglePassSamProgram Processed 123,000,000 records. Elapsed time: 00:02:59s. Time for last 1,000,000: 1s. Last read position: chr3:195,725,566 INFO 2026-06-03 19:59:29 SinglePassSamProgram Processed 124,000,000 records. Elapsed time: 00:03:01s. Time for last 1,000,000: 1s. Last read position: chr4:500,575 INFO 2026-06-03 19:59:31 SinglePassSamProgram Processed 125,000,000 records. Elapsed time: 00:03:03s. Time for last 1,000,000: 1s. Last read position: chr4:2,512,362 INFO 2026-06-03 19:59:32 SinglePassSamProgram Processed 126,000,000 records. Elapsed time: 00:03:04s. Time for last 1,000,000: 1s. Last read position: chr4:7,734,274 INFO 2026-06-03 19:59:34 SinglePassSamProgram Processed 127,000,000 records. Elapsed time: 00:03:06s. Time for last 1,000,000: 1s. Last read position: chr4:24,533,008 INFO 2026-06-03 19:59:35 SinglePassSamProgram Processed 128,000,000 records. Elapsed time: 00:03:07s. Time for last 1,000,000: 1s. Last read position: chr4:39,045,057 INFO 2026-06-03 19:59:37 SinglePassSamProgram Processed 129,000,000 records. Elapsed time: 00:03:09s. Time for last 1,000,000: 1s. Last read position: chr4:55,396,176 INFO 2026-06-03 19:59:39 SinglePassSamProgram Processed 130,000,000 records. Elapsed time: 00:03:11s. Time for last 1,000,000: 1s. Last read position: chr4:76,740,285 INFO 2026-06-03 19:59:40 SinglePassSamProgram Processed 131,000,000 records. Elapsed time: 00:03:12s. Time for last 1,000,000: 1s. Last read position: chr4:87,047,193 INFO 2026-06-03 19:59:41 SinglePassSamProgram Processed 132,000,000 records. Elapsed time: 00:03:13s. Time for last 1,000,000: 1s. Last read position: chr4:105,235,583 INFO 2026-06-03 19:59:43 SinglePassSamProgram Processed 133,000,000 records. Elapsed time: 00:03:15s. Time for last 1,000,000: 1s. Last read position: chr4:122,262,840 INFO 2026-06-03 19:59:45 SinglePassSamProgram Processed 134,000,000 records. Elapsed time: 00:03:17s. Time for last 1,000,000: 1s. Last read position: chr4:147,732,437 INFO 2026-06-03 19:59:46 SinglePassSamProgram Processed 135,000,000 records. Elapsed time: 00:03:18s. Time for last 1,000,000: 1s. Last read position: chr4:158,708,037 INFO 2026-06-03 19:59:48 SinglePassSamProgram Processed 136,000,000 records. Elapsed time: 00:03:20s. Time for last 1,000,000: 1s. Last read position: chr4:185,398,989 INFO 2026-06-03 19:59:50 SinglePassSamProgram Processed 137,000,000 records. Elapsed time: 00:03:22s. Time for last 1,000,000: 1s. Last read position: chr5:6,750,411 INFO 2026-06-03 19:59:51 SinglePassSamProgram Processed 138,000,000 records. Elapsed time: 00:03:23s. Time for last 1,000,000: 1s. Last read position: chr5:14,487,574 INFO 2026-06-03 19:59:53 SinglePassSamProgram Processed 139,000,000 records. Elapsed time: 00:03:25s. Time for last 1,000,000: 1s. Last read position: chr5:36,608,458 INFO 2026-06-03 19:59:56 SinglePassSamProgram Processed 140,000,000 records. Elapsed time: 00:03:28s. Time for last 1,000,000: 2s. Last read position: chr5:53,886,365 INFO 2026-06-03 19:59:58 SinglePassSamProgram Processed 141,000,000 records. Elapsed time: 00:03:30s. Time for last 1,000,000: 1s. Last read position: chr5:70,108,827 INFO 2026-06-03 19:59:59 SinglePassSamProgram Processed 142,000,000 records. Elapsed time: 00:03:31s. Time for last 1,000,000: 1s. Last read position: chr5:77,708,316 INFO 2026-06-03 20:00:00 SinglePassSamProgram Processed 143,000,000 records. Elapsed time: 00:03:33s. Time for last 1,000,000: 1s. Last read position: chr5:83,572,430 INFO 2026-06-03 20:00:02 SinglePassSamProgram Processed 144,000,000 records. Elapsed time: 00:03:34s. Time for last 1,000,000: 1s. Last read position: chr5:109,337,234 INFO 2026-06-03 20:00:03 SinglePassSamProgram Processed 145,000,000 records. Elapsed time: 00:03:35s. Time for last 1,000,000: 1s. Last read position: chr5:132,203,722 INFO 2026-06-03 20:00:05 SinglePassSamProgram Processed 146,000,000 records. Elapsed time: 00:03:37s. Time for last 1,000,000: 1s. Last read position: chr5:137,644,692 INFO 2026-06-03 20:00:07 SinglePassSamProgram Processed 147,000,000 records. Elapsed time: 00:03:39s. Time for last 1,000,000: 1s. Last read position: chr5:140,243,313 INFO 2026-06-03 20:00:08 SinglePassSamProgram Processed 148,000,000 records. Elapsed time: 00:03:40s. Time for last 1,000,000: 1s. Last read position: chr5:141,400,142 INFO 2026-06-03 20:00:09 SinglePassSamProgram Processed 149,000,000 records. Elapsed time: 00:03:42s. Time for last 1,000,000: 1s. Last read position: chr5:147,415,746 INFO 2026-06-03 20:00:11 SinglePassSamProgram Processed 150,000,000 records. Elapsed time: 00:03:43s. Time for last 1,000,000: 1s. Last read position: chr5:150,133,677 INFO 2026-06-03 20:00:13 SinglePassSamProgram Processed 151,000,000 records. Elapsed time: 00:03:45s. Time for last 1,000,000: 1s. Last read position: chr5:150,405,120 INFO 2026-06-03 20:00:14 SinglePassSamProgram Processed 152,000,000 records. Elapsed time: 00:03:46s. Time for last 1,000,000: 1s. Last read position: chr5:151,025,252 INFO 2026-06-03 20:00:16 SinglePassSamProgram Processed 153,000,000 records. Elapsed time: 00:03:48s. Time for last 1,000,000: 1s. Last read position: chr5:154,802,372 INFO 2026-06-03 20:00:17 SinglePassSamProgram Processed 154,000,000 records. Elapsed time: 00:03:50s. Time for last 1,000,000: 1s. Last read position: chr5:171,392,729 INFO 2026-06-03 20:00:19 SinglePassSamProgram Processed 155,000,000 records. Elapsed time: 00:03:51s. Time for last 1,000,000: 1s. Last read position: chr5:177,097,296 INFO 2026-06-03 20:00:20 SinglePassSamProgram Processed 156,000,000 records. Elapsed time: 00:03:52s. Time for last 1,000,000: 1s. Last read position: chr5:178,986,644 INFO 2026-06-03 20:00:22 SinglePassSamProgram Processed 157,000,000 records. Elapsed time: 00:03:54s. Time for last 1,000,000: 1s. Last read position: chr5:179,833,115 INFO 2026-06-03 20:00:23 SinglePassSamProgram Processed 158,000,000 records. Elapsed time: 00:03:55s. Time for last 1,000,000: 1s. Last read position: chr6:1,611,002 INFO 2026-06-03 20:00:25 SinglePassSamProgram Processed 159,000,000 records. Elapsed time: 00:03:57s. Time for last 1,000,000: 1s. Last read position: chr6:7,289,810 INFO 2026-06-03 20:00:26 SinglePassSamProgram Processed 160,000,000 records. Elapsed time: 00:03:58s. Time for last 1,000,000: 1s. Last read position: chr6:21,201,151 INFO 2026-06-03 20:00:28 SinglePassSamProgram Processed 161,000,000 records. Elapsed time: 00:04:00s. Time for last 1,000,000: 1s. Last read position: chr6:30,071,019 INFO 2026-06-03 20:00:29 SinglePassSamProgram Processed 162,000,000 records. Elapsed time: 00:04:01s. Time for last 1,000,000: 1s. Last read position: chr6:31,269,145 INFO 2026-06-03 20:00:31 SinglePassSamProgram Processed 163,000,000 records. Elapsed time: 00:04:03s. Time for last 1,000,000: 1s. Last read position: chr6:31,666,196 INFO 2026-06-03 20:00:32 SinglePassSamProgram Processed 164,000,000 records. Elapsed time: 00:04:04s. Time for last 1,000,000: 1s. Last read position: chr6:31,991,771 INFO 2026-06-03 20:00:34 SinglePassSamProgram Processed 165,000,000 records. Elapsed time: 00:04:06s. Time for last 1,000,000: 1s. Last read position: chr6:32,049,379 INFO 2026-06-03 20:00:35 SinglePassSamProgram Processed 166,000,000 records. Elapsed time: 00:04:07s. Time for last 1,000,000: 1s. Last read position: chr6:32,181,563 INFO 2026-06-03 20:00:36 SinglePassSamProgram Processed 167,000,000 records. Elapsed time: 00:04:08s. Time for last 1,000,000: 1s. Last read position: chr6:33,268,151 INFO 2026-06-03 20:00:38 SinglePassSamProgram Processed 168,000,000 records. Elapsed time: 00:04:10s. Time for last 1,000,000: 1s. Last read position: chr6:34,243,481 INFO 2026-06-03 20:00:39 SinglePassSamProgram Processed 169,000,000 records. Elapsed time: 00:04:11s. Time for last 1,000,000: 1s. Last read position: chr6:38,288,289 INFO 2026-06-03 20:00:41 SinglePassSamProgram Processed 170,000,000 records. Elapsed time: 00:04:13s. Time for last 1,000,000: 1s. Last read position: chr6:43,142,046 INFO 2026-06-03 20:00:42 SinglePassSamProgram Processed 171,000,000 records. Elapsed time: 00:04:14s. Time for last 1,000,000: 1s. Last read position: chr6:46,883,633 INFO 2026-06-03 20:00:43 SinglePassSamProgram Processed 172,000,000 records. Elapsed time: 00:04:15s. Time for last 1,000,000: 1s. Last read position: chr6:56,701,936 INFO 2026-06-03 20:00:44 SinglePassSamProgram Processed 173,000,000 records. Elapsed time: 00:04:16s. Time for last 1,000,000: 1s. Last read position: chr6:75,156,445 INFO 2026-06-03 20:00:46 SinglePassSamProgram Processed 174,000,000 records. Elapsed time: 00:04:18s. Time for last 1,000,000: 1s. Last read position: chr6:88,614,379 INFO 2026-06-03 20:00:47 SinglePassSamProgram Processed 175,000,000 records. Elapsed time: 00:04:19s. Time for last 1,000,000: 1s. Last read position: chr6:108,663,832 INFO 2026-06-03 20:00:49 SinglePassSamProgram Processed 176,000,000 records. Elapsed time: 00:04:21s. Time for last 1,000,000: 1s. Last read position: chr6:117,566,949 INFO 2026-06-03 20:00:50 SinglePassSamProgram Processed 177,000,000 records. Elapsed time: 00:04:22s. Time for last 1,000,000: 1s. Last read position: chr6:131,950,796 INFO 2026-06-03 20:00:52 SinglePassSamProgram Processed 178,000,000 records. Elapsed time: 00:04:24s. Time for last 1,000,000: 1s. Last read position: chr6:144,436,078 INFO 2026-06-03 20:00:53 SinglePassSamProgram Processed 179,000,000 records. Elapsed time: 00:04:25s. Time for last 1,000,000: 1s. Last read position: chr6:152,136,651 INFO 2026-06-03 20:00:54 SinglePassSamProgram Processed 180,000,000 records. Elapsed time: 00:04:26s. Time for last 1,000,000: 1s. Last read position: chr6:158,789,338 INFO 2026-06-03 20:00:56 SinglePassSamProgram Processed 181,000,000 records. Elapsed time: 00:04:28s. Time for last 1,000,000: 1s. Last read position: chr6:167,962,511 INFO 2026-06-03 20:00:57 SinglePassSamProgram Processed 182,000,000 records. Elapsed time: 00:04:29s. Time for last 1,000,000: 1s. Last read position: chr7:898,949 INFO 2026-06-03 20:00:59 SinglePassSamProgram Processed 183,000,000 records. Elapsed time: 00:04:31s. Time for last 1,000,000: 1s. Last read position: chr7:3,407,437 INFO 2026-06-03 20:01:00 SinglePassSamProgram Processed 184,000,000 records. Elapsed time: 00:04:32s. Time for last 1,000,000: 1s. Last read position: chr7:5,394,499 INFO 2026-06-03 20:01:02 SinglePassSamProgram Processed 185,000,000 records. Elapsed time: 00:04:34s. Time for last 1,000,000: 1s. Last read position: chr7:5,603,337 INFO 2026-06-03 20:01:04 SinglePassSamProgram Processed 186,000,000 records. Elapsed time: 00:04:36s. Time for last 1,000,000: 1s. Last read position: chr7:17,339,175 INFO 2026-06-03 20:01:05 SinglePassSamProgram Processed 187,000,000 records. Elapsed time: 00:04:37s. Time for last 1,000,000: 1s. Last read position: chr7:28,804,466 INFO 2026-06-03 20:01:07 SinglePassSamProgram Processed 188,000,000 records. Elapsed time: 00:04:39s. Time for last 1,000,000: 1s. Last read position: chr7:43,787,931 INFO 2026-06-03 20:01:09 SinglePassSamProgram Processed 189,000,000 records. Elapsed time: 00:04:41s. Time for last 1,000,000: 1s. Last read position: chr7:44,207,477 INFO 2026-06-03 20:01:10 SinglePassSamProgram Processed 190,000,000 records. Elapsed time: 00:04:42s. Time for last 1,000,000: 1s. Last read position: chr7:55,492,314 INFO 2026-06-03 20:01:12 SinglePassSamProgram Processed 191,000,000 records. Elapsed time: 00:04:44s. Time for last 1,000,000: 1s. Last read position: chr7:70,790,744 INFO 2026-06-03 20:01:13 SinglePassSamProgram Processed 192,000,000 records. Elapsed time: 00:04:45s. Time for last 1,000,000: 1s. Last read position: chr7:74,037,711 INFO 2026-06-03 20:01:15 SinglePassSamProgram Processed 193,000,000 records. Elapsed time: 00:04:47s. Time for last 1,000,000: 1s. Last read position: chr7:75,422,169 INFO 2026-06-03 20:01:16 SinglePassSamProgram Processed 194,000,000 records. Elapsed time: 00:04:48s. Time for last 1,000,000: 1s. Last read position: chr7:77,005,677 INFO 2026-06-03 20:01:17 SinglePassSamProgram Processed 195,000,000 records. Elapsed time: 00:04:49s. Time for last 1,000,000: 1s. Last read position: chr7:92,062,275 INFO 2026-06-03 20:01:19 SinglePassSamProgram Processed 196,000,000 records. Elapsed time: 00:04:51s. Time for last 1,000,000: 1s. Last read position: chr7:94,404,880 INFO 2026-06-03 20:01:21 SinglePassSamProgram Processed 197,000,000 records. Elapsed time: 00:04:53s. Time for last 1,000,000: 1s. Last read position: chr7:94,412,098 INFO 2026-06-03 20:01:23 SinglePassSamProgram Processed 198,000,000 records. Elapsed time: 00:04:55s. Time for last 1,000,000: 1s. Last read position: chr7:94,420,624 INFO 2026-06-03 20:01:24 SinglePassSamProgram Processed 199,000,000 records. Elapsed time: 00:04:57s. Time for last 1,000,000: 1s. Last read position: chr7:94,429,302 INFO 2026-06-03 20:01:26 SinglePassSamProgram Processed 200,000,000 records. Elapsed time: 00:04:58s. Time for last 1,000,000: 1s. Last read position: chr7:99,572,801 INFO 2026-06-03 20:01:28 SinglePassSamProgram Processed 201,000,000 records. Elapsed time: 00:05:00s. Time for last 1,000,000: 1s. Last read position: chr7:100,605,114 INFO 2026-06-03 20:01:29 SinglePassSamProgram Processed 202,000,000 records. Elapsed time: 00:05:01s. Time for last 1,000,000: 1s. Last read position: chr7:102,353,150 INFO 2026-06-03 20:01:30 SinglePassSamProgram Processed 203,000,000 records. Elapsed time: 00:05:03s. Time for last 1,000,000: 1s. Last read position: chr7:105,063,458 INFO 2026-06-03 20:01:32 SinglePassSamProgram Processed 204,000,000 records. Elapsed time: 00:05:04s. Time for last 1,000,000: 1s. Last read position: chr7:116,906,263 INFO 2026-06-03 20:01:34 SinglePassSamProgram Processed 205,000,000 records. Elapsed time: 00:05:06s. Time for last 1,000,000: 1s. Last read position: chr7:128,840,870 INFO 2026-06-03 20:01:35 SinglePassSamProgram Processed 206,000,000 records. Elapsed time: 00:05:07s. Time for last 1,000,000: 1s. Last read position: chr7:137,882,411 INFO 2026-06-03 20:01:37 SinglePassSamProgram Processed 207,000,000 records. Elapsed time: 00:05:09s. Time for last 1,000,000: 1s. Last read position: chr7:141,071,476 INFO 2026-06-03 20:01:39 SinglePassSamProgram Processed 208,000,000 records. Elapsed time: 00:05:11s. Time for last 1,000,000: 1s. Last read position: chr7:144,365,554 INFO 2026-06-03 20:01:40 SinglePassSamProgram Processed 209,000,000 records. Elapsed time: 00:05:12s. Time for last 1,000,000: 1s. Last read position: chr7:151,082,275 INFO 2026-06-03 20:01:42 SinglePassSamProgram Processed 210,000,000 records. Elapsed time: 00:05:14s. Time for last 1,000,000: 1s. Last read position: chr7:152,179,929 INFO 2026-06-03 20:01:43 SinglePassSamProgram Processed 211,000,000 records. Elapsed time: 00:05:15s. Time for last 1,000,000: 1s. Last read position: chr7:155,741,836 INFO 2026-06-03 20:01:44 SinglePassSamProgram Processed 212,000,000 records. Elapsed time: 00:05:16s. Time for last 1,000,000: 1s. Last read position: chr8:13,100,701 INFO 2026-06-03 20:01:46 SinglePassSamProgram Processed 213,000,000 records. Elapsed time: 00:05:18s. Time for last 1,000,000: 1s. Last read position: chr8:22,617,384 INFO 2026-06-03 20:01:48 SinglePassSamProgram Processed 214,000,000 records. Elapsed time: 00:05:20s. Time for last 1,000,000: 1s. Last read position: chr8:30,700,087 INFO 2026-06-03 20:01:49 SinglePassSamProgram Processed 215,000,000 records. Elapsed time: 00:05:21s. Time for last 1,000,000: 1s. Last read position: chr8:38,426,180 INFO 2026-06-03 20:01:51 SinglePassSamProgram Processed 216,000,000 records. Elapsed time: 00:05:23s. Time for last 1,000,000: 1s. Last read position: chr8:47,778,472 INFO 2026-06-03 20:01:52 SinglePassSamProgram Processed 217,000,000 records. Elapsed time: 00:05:24s. Time for last 1,000,000: 1s. Last read position: chr8:67,163,783 INFO 2026-06-03 20:01:54 SinglePassSamProgram Processed 218,000,000 records. Elapsed time: 00:05:26s. Time for last 1,000,000: 1s. Last read position: chr8:81,521,977 INFO 2026-06-03 20:01:55 SinglePassSamProgram Processed 219,000,000 records. Elapsed time: 00:05:28s. Time for last 1,000,000: 1s. Last read position: chr8:100,703,289 INFO 2026-06-03 20:01:57 SinglePassSamProgram Processed 220,000,000 records. Elapsed time: 00:05:29s. Time for last 1,000,000: 1s. Last read position: chr8:108,202,982 INFO 2026-06-03 20:01:58 SinglePassSamProgram Processed 221,000,000 records. Elapsed time: 00:05:30s. Time for last 1,000,000: 1s. Last read position: chr8:124,314,004 INFO 2026-06-03 20:02:00 SinglePassSamProgram Processed 222,000,000 records. Elapsed time: 00:05:32s. Time for last 1,000,000: 1s. Last read position: chr8:141,427,016 INFO 2026-06-03 20:02:01 SinglePassSamProgram Processed 223,000,000 records. Elapsed time: 00:05:33s. Time for last 1,000,000: 1s. Last read position: chr8:143,858,216 INFO 2026-06-03 20:02:03 SinglePassSamProgram Processed 224,000,000 records. Elapsed time: 00:05:35s. Time for last 1,000,000: 1s. Last read position: chr8:143,860,035 INFO 2026-06-03 20:02:04 SinglePassSamProgram Processed 225,000,000 records. Elapsed time: 00:05:36s. Time for last 1,000,000: 1s. Last read position: chr8:143,861,858 INFO 2026-06-03 20:02:06 SinglePassSamProgram Processed 226,000,000 records. Elapsed time: 00:05:38s. Time for last 1,000,000: 1s. Last read position: chr8:143,863,639 INFO 2026-06-03 20:02:07 SinglePassSamProgram Processed 227,000,000 records. Elapsed time: 00:05:39s. Time for last 1,000,000: 1s. Last read position: chr8:143,865,562 INFO 2026-06-03 20:02:09 SinglePassSamProgram Processed 228,000,000 records. Elapsed time: 00:05:41s. Time for last 1,000,000: 1s. Last read position: chr8:143,916,211 INFO 2026-06-03 20:02:10 SinglePassSamProgram Processed 229,000,000 records. Elapsed time: 00:05:42s. Time for last 1,000,000: 1s. Last read position: chr8:143,929,168 INFO 2026-06-03 20:02:12 SinglePassSamProgram Processed 230,000,000 records. Elapsed time: 00:05:44s. Time for last 1,000,000: 1s. Last read position: chr8:144,396,382 INFO 2026-06-03 20:02:14 SinglePassSamProgram Processed 231,000,000 records. Elapsed time: 00:05:46s. Time for last 1,000,000: 1s. Last read position: chr9:2,876,102 INFO 2026-06-03 20:02:15 SinglePassSamProgram Processed 232,000,000 records. Elapsed time: 00:05:47s. Time for last 1,000,000: 1s. Last read position: chr9:14,307,247 INFO 2026-06-03 20:02:17 SinglePassSamProgram Processed 233,000,000 records. Elapsed time: 00:05:49s. Time for last 1,000,000: 1s. Last read position: chr9:33,384,852 INFO 2026-06-03 20:02:19 SinglePassSamProgram Processed 234,000,000 records. Elapsed time: 00:05:51s. Time for last 1,000,000: 1s. Last read position: chr9:35,685,656 INFO 2026-06-03 20:02:20 SinglePassSamProgram Processed 235,000,000 records. Elapsed time: 00:05:52s. Time for last 1,000,000: 1s. Last read position: chr9:40,584,350 INFO 2026-06-03 20:02:22 SinglePassSamProgram Processed 236,000,000 records. Elapsed time: 00:05:54s. Time for last 1,000,000: 1s. Last read position: chr9:83,970,180 INFO 2026-06-03 20:02:23 SinglePassSamProgram Processed 237,000,000 records. Elapsed time: 00:05:56s. Time for last 1,000,000: 1s. Last read position: chr9:92,719,380 INFO 2026-06-03 20:02:25 SinglePassSamProgram Processed 238,000,000 records. Elapsed time: 00:05:57s. Time for last 1,000,000: 1s. Last read position: chr9:100,242,562 INFO 2026-06-03 20:02:27 SinglePassSamProgram Processed 239,000,000 records. Elapsed time: 00:05:59s. Time for last 1,000,000: 1s. Last read position: chr9:112,275,970 INFO 2026-06-03 20:02:28 SinglePassSamProgram Processed 240,000,000 records. Elapsed time: 00:06:01s. Time for last 1,000,000: 1s. Last read position: chr9:115,081,791 INFO 2026-06-03 20:02:30 SinglePassSamProgram Processed 241,000,000 records. Elapsed time: 00:06:02s. Time for last 1,000,000: 1s. Last read position: chr9:122,258,147 INFO 2026-06-03 20:02:32 SinglePassSamProgram Processed 242,000,000 records. Elapsed time: 00:06:04s. Time for last 1,000,000: 1s. Last read position: chr9:127,824,944 INFO 2026-06-03 20:02:33 SinglePassSamProgram Processed 243,000,000 records. Elapsed time: 00:06:06s. Time for last 1,000,000: 1s. Last read position: chr9:128,605,331 INFO 2026-06-03 20:02:35 SinglePassSamProgram Processed 244,000,000 records. Elapsed time: 00:06:08s. Time for last 1,000,000: 1s. Last read position: chr9:130,854,965 INFO 2026-06-03 20:02:37 SinglePassSamProgram Processed 245,000,000 records. Elapsed time: 00:06:09s. Time for last 1,000,000: 1s. Last read position: chr9:132,401,977 INFO 2026-06-03 20:02:39 SinglePassSamProgram Processed 246,000,000 records. Elapsed time: 00:06:11s. Time for last 1,000,000: 1s. Last read position: chr9:134,738,473 INFO 2026-06-03 20:02:41 SinglePassSamProgram Processed 247,000,000 records. Elapsed time: 00:06:13s. Time for last 1,000,000: 1s. Last read position: chr9:134,820,151 INFO 2026-06-03 20:02:42 SinglePassSamProgram Processed 248,000,000 records. Elapsed time: 00:06:14s. Time for last 1,000,000: 1s. Last read position: chr9:136,513,417 INFO 2026-06-03 20:02:44 SinglePassSamProgram Processed 249,000,000 records. Elapsed time: 00:06:16s. Time for last 1,000,000: 1s. Last read position: chr9:137,218,214 INFO 2026-06-03 20:02:46 SinglePassSamProgram Processed 250,000,000 records. Elapsed time: 00:06:18s. Time for last 1,000,000: 1s. Last read position: chr10:3,782,163 INFO 2026-06-03 20:02:47 SinglePassSamProgram Processed 251,000,000 records. Elapsed time: 00:06:19s. Time for last 1,000,000: 1s. Last read position: chr10:17,229,380 INFO 2026-06-03 20:02:49 SinglePassSamProgram Processed 252,000,000 records. Elapsed time: 00:06:21s. Time for last 1,000,000: 1s. Last read position: chr10:24,546,030 INFO 2026-06-03 20:02:50 SinglePassSamProgram Processed 253,000,000 records. Elapsed time: 00:06:23s. Time for last 1,000,000: 1s. Last read position: chr10:32,022,181 INFO 2026-06-03 20:02:52 SinglePassSamProgram Processed 254,000,000 records. Elapsed time: 00:06:24s. Time for last 1,000,000: 1s. Last read position: chr10:45,443,467 INFO 2026-06-03 20:02:53 SinglePassSamProgram Processed 255,000,000 records. Elapsed time: 00:06:25s. Time for last 1,000,000: 1s. Last read position: chr10:50,686,042 INFO 2026-06-03 20:02:55 SinglePassSamProgram Processed 256,000,000 records. Elapsed time: 00:06:27s. Time for last 1,000,000: 1s. Last read position: chr10:68,956,208 INFO 2026-06-03 20:02:56 SinglePassSamProgram Processed 257,000,000 records. Elapsed time: 00:06:29s. Time for last 1,000,000: 1s. Last read position: chr10:73,732,597 INFO 2026-06-03 20:02:58 SinglePassSamProgram Processed 258,000,000 records. Elapsed time: 00:06:30s. Time for last 1,000,000: 1s. Last read position: chr10:79,300,879 INFO 2026-06-03 20:02:59 SinglePassSamProgram Processed 259,000,000 records. Elapsed time: 00:06:31s. Time for last 1,000,000: 1s. Last read position: chr10:88,938,012 INFO 2026-06-03 20:03:01 SinglePassSamProgram Processed 260,000,000 records. Elapsed time: 00:06:33s. Time for last 1,000,000: 1s. Last read position: chr10:96,954,905 INFO 2026-06-03 20:03:03 SinglePassSamProgram Processed 261,000,000 records. Elapsed time: 00:06:35s. Time for last 1,000,000: 1s. Last read position: chr10:102,139,347 INFO 2026-06-03 20:03:04 SinglePassSamProgram Processed 262,000,000 records. Elapsed time: 00:06:36s. Time for last 1,000,000: 1s. Last read position: chr10:110,208,052 INFO 2026-06-03 20:03:06 SinglePassSamProgram Processed 263,000,000 records. Elapsed time: 00:06:38s. Time for last 1,000,000: 1s. Last read position: chr10:119,527,314 INFO 2026-06-03 20:03:08 SinglePassSamProgram Processed 264,000,000 records. Elapsed time: 00:06:40s. Time for last 1,000,000: 1s. Last read position: chr10:126,094,041 INFO 2026-06-03 20:03:09 SinglePassSamProgram Processed 265,000,000 records. Elapsed time: 00:06:42s. Time for last 1,000,000: 1s. Last read position: chr11:293,876 INFO 2026-06-03 20:03:11 SinglePassSamProgram Processed 266,000,000 records. Elapsed time: 00:06:43s. Time for last 1,000,000: 1s. Last read position: chr11:613,447 INFO 2026-06-03 20:03:13 SinglePassSamProgram Processed 267,000,000 records. Elapsed time: 00:06:45s. Time for last 1,000,000: 1s. Last read position: chr11:1,277,013 INFO 2026-06-03 20:03:14 SinglePassSamProgram Processed 268,000,000 records. Elapsed time: 00:06:47s. Time for last 1,000,000: 1s. Last read position: chr11:4,123,222 INFO 2026-06-03 20:03:16 SinglePassSamProgram Processed 269,000,000 records. Elapsed time: 00:06:48s. Time for last 1,000,000: 1s. Last read position: chr11:8,919,557 INFO 2026-06-03 20:03:17 SinglePassSamProgram Processed 270,000,000 records. Elapsed time: 00:06:49s. Time for last 1,000,000: 1s. Last read position: chr11:15,372,056 INFO 2026-06-03 20:03:19 SinglePassSamProgram Processed 271,000,000 records. Elapsed time: 00:06:51s. Time for last 1,000,000: 1s. Last read position: chr11:34,089,420 INFO 2026-06-03 20:03:20 SinglePassSamProgram Processed 272,000,000 records. Elapsed time: 00:06:52s. Time for last 1,000,000: 1s. Last read position: chr11:46,320,298 INFO 2026-06-03 20:03:22 SinglePassSamProgram Processed 273,000,000 records. Elapsed time: 00:06:54s. Time for last 1,000,000: 1s. Last read position: chr11:57,308,674 INFO 2026-06-03 20:03:23 SinglePassSamProgram Processed 274,000,000 records. Elapsed time: 00:06:55s. Time for last 1,000,000: 1s. Last read position: chr11:58,834,346 INFO 2026-06-03 20:03:24 SinglePassSamProgram Processed 275,000,000 records. Elapsed time: 00:06:56s. Time for last 1,000,000: 1s. Last read position: chr11:61,906,601 INFO 2026-06-03 20:03:26 SinglePassSamProgram Processed 276,000,000 records. Elapsed time: 00:06:58s. Time for last 1,000,000: 1s. Last read position: chr11:62,525,373 INFO 2026-06-03 20:03:27 SinglePassSamProgram Processed 277,000,000 records. Elapsed time: 00:06:59s. Time for last 1,000,000: 1s. Last read position: chr11:62,578,868 INFO 2026-06-03 20:03:29 SinglePassSamProgram Processed 278,000,000 records. Elapsed time: 00:07:01s. Time for last 1,000,000: 1s. Last read position: chr11:64,230,841 INFO 2026-06-03 20:03:30 SinglePassSamProgram Processed 279,000,000 records. Elapsed time: 00:07:03s. Time for last 1,000,000: 1s. Last read position: chr11:65,120,792 INFO 2026-06-03 20:03:32 SinglePassSamProgram Processed 280,000,000 records. Elapsed time: 00:07:04s. Time for last 1,000,000: 1s. Last read position: chr11:65,598,573 INFO 2026-06-03 20:03:34 SinglePassSamProgram Processed 281,000,000 records. Elapsed time: 00:07:06s. Time for last 1,000,000: 1s. Last read position: chr11:66,265,166 INFO 2026-06-03 20:03:35 SinglePassSamProgram Processed 282,000,000 records. Elapsed time: 00:07:07s. Time for last 1,000,000: 1s. Last read position: chr11:67,279,649 INFO 2026-06-03 20:03:36 SinglePassSamProgram Processed 283,000,000 records. Elapsed time: 00:07:08s. Time for last 1,000,000: 1s. Last read position: chr11:68,892,316 INFO 2026-06-03 20:03:38 SinglePassSamProgram Processed 284,000,000 records. Elapsed time: 00:07:10s. Time for last 1,000,000: 1s. Last read position: chr11:72,014,439 INFO 2026-06-03 20:03:40 SinglePassSamProgram Processed 285,000,000 records. Elapsed time: 00:07:12s. Time for last 1,000,000: 1s. Last read position: chr11:74,133,522 INFO 2026-06-03 20:03:41 SinglePassSamProgram Processed 286,000,000 records. Elapsed time: 00:07:13s. Time for last 1,000,000: 1s. Last read position: chr11:78,854,274 INFO 2026-06-03 20:03:43 SinglePassSamProgram Processed 287,000,000 records. Elapsed time: 00:07:15s. Time for last 1,000,000: 1s. Last read position: chr11:101,961,864 INFO 2026-06-03 20:03:44 SinglePassSamProgram Processed 288,000,000 records. Elapsed time: 00:07:17s. Time for last 1,000,000: 1s. Last read position: chr11:114,062,530 INFO 2026-06-03 20:03:46 SinglePassSamProgram Processed 289,000,000 records. Elapsed time: 00:07:18s. Time for last 1,000,000: 1s. Last read position: chr11:118,532,911 INFO 2026-06-03 20:03:48 SinglePassSamProgram Processed 290,000,000 records. Elapsed time: 00:07:20s. Time for last 1,000,000: 1s. Last read position: chr11:119,113,655 INFO 2026-06-03 20:03:49 SinglePassSamProgram Processed 291,000,000 records. Elapsed time: 00:07:21s. Time for last 1,000,000: 1s. Last read position: chr11:126,265,348 INFO 2026-06-03 20:03:51 SinglePassSamProgram Processed 292,000,000 records. Elapsed time: 00:07:23s. Time for last 1,000,000: 1s. Last read position: chr12:865,111 INFO 2026-06-03 20:03:53 SinglePassSamProgram Processed 293,000,000 records. Elapsed time: 00:07:25s. Time for last 1,000,000: 1s. Last read position: chr12:6,330,680 INFO 2026-06-03 20:03:54 SinglePassSamProgram Processed 294,000,000 records. Elapsed time: 00:07:26s. Time for last 1,000,000: 1s. Last read position: chr12:6,941,385 INFO 2026-06-03 20:03:56 SinglePassSamProgram Processed 295,000,000 records. Elapsed time: 00:07:28s. Time for last 1,000,000: 1s. Last read position: chr12:9,069,791 INFO 2026-06-03 20:03:58 SinglePassSamProgram Processed 296,000,000 records. Elapsed time: 00:07:30s. Time for last 1,000,000: 1s. Last read position: chr12:14,944,776 INFO 2026-06-03 20:03:59 SinglePassSamProgram Processed 297,000,000 records. Elapsed time: 00:07:31s. Time for last 1,000,000: 1s. Last read position: chr12:40,479,529 INFO 2026-06-03 20:04:01 SinglePassSamProgram Processed 298,000,000 records. Elapsed time: 00:07:33s. Time for last 1,000,000: 1s. Last read position: chr12:49,026,239 INFO 2026-06-03 20:04:02 SinglePassSamProgram Processed 299,000,000 records. Elapsed time: 00:07:34s. Time for last 1,000,000: 1s. Last read position: chr12:49,635,364 INFO 2026-06-03 20:04:04 SinglePassSamProgram Processed 300,000,000 records. Elapsed time: 00:07:36s. Time for last 1,000,000: 1s. Last read position: chr12:52,238,678 INFO 2026-06-03 20:04:06 SinglePassSamProgram Processed 301,000,000 records. Elapsed time: 00:07:38s. Time for last 1,000,000: 1s. Last read position: chr12:53,441,759 INFO 2026-06-03 20:04:07 SinglePassSamProgram Processed 302,000,000 records. Elapsed time: 00:07:39s. Time for last 1,000,000: 1s. Last read position: chr12:54,858,243 INFO 2026-06-03 20:04:09 SinglePassSamProgram Processed 303,000,000 records. Elapsed time: 00:07:41s. Time for last 1,000,000: 1s. Last read position: chr12:56,326,811 INFO 2026-06-03 20:04:10 SinglePassSamProgram Processed 304,000,000 records. Elapsed time: 00:07:43s. Time for last 1,000,000: 1s. Last read position: chr12:57,099,778 INFO 2026-06-03 20:04:12 SinglePassSamProgram Processed 305,000,000 records. Elapsed time: 00:07:44s. Time for last 1,000,000: 1s. Last read position: chr12:57,183,474 INFO 2026-06-03 20:04:14 SinglePassSamProgram Processed 306,000,000 records. Elapsed time: 00:07:46s. Time for last 1,000,000: 1s. Last read position: chr12:57,500,498 INFO 2026-06-03 20:04:16 SinglePassSamProgram Processed 307,000,000 records. Elapsed time: 00:07:48s. Time for last 1,000,000: 1s. Last read position: chr12:66,169,855 INFO 2026-06-03 20:04:17 SinglePassSamProgram Processed 308,000,000 records. Elapsed time: 00:07:49s. Time for last 1,000,000: 1s. Last read position: chr12:89,351,638 INFO 2026-06-03 20:04:19 SinglePassSamProgram Processed 309,000,000 records. Elapsed time: 00:07:51s. Time for last 1,000,000: 1s. Last read position: chr12:98,601,398 INFO 2026-06-03 20:04:20 SinglePassSamProgram Processed 310,000,000 records. Elapsed time: 00:07:52s. Time for last 1,000,000: 1s. Last read position: chr12:108,292,109 INFO 2026-06-03 20:04:22 SinglePassSamProgram Processed 311,000,000 records. Elapsed time: 00:07:54s. Time for last 1,000,000: 1s. Last read position: chr12:111,790,443 INFO 2026-06-03 20:04:23 SinglePassSamProgram Processed 312,000,000 records. Elapsed time: 00:07:55s. Time for last 1,000,000: 1s. Last read position: chr12:118,144,732 INFO 2026-06-03 20:04:25 SinglePassSamProgram Processed 313,000,000 records. Elapsed time: 00:07:57s. Time for last 1,000,000: 1s. Last read position: chr12:121,822,780 INFO 2026-06-03 20:04:26 SinglePassSamProgram Processed 314,000,000 records. Elapsed time: 00:07:58s. Time for last 1,000,000: 1s. Last read position: chr12:124,334,467 INFO 2026-06-03 20:04:28 SinglePassSamProgram Processed 315,000,000 records. Elapsed time: 00:08:00s. Time for last 1,000,000: 1s. Last read position: chr12:131,916,016 INFO 2026-06-03 20:04:29 SinglePassSamProgram Processed 316,000,000 records. Elapsed time: 00:08:01s. Time for last 1,000,000: 1s. Last read position: chr13:19,407,826 INFO 2026-06-03 20:04:31 SinglePassSamProgram Processed 317,000,000 records. Elapsed time: 00:08:03s. Time for last 1,000,000: 1s. Last read position: chr13:26,676,600 INFO 2026-06-03 20:04:32 SinglePassSamProgram Processed 318,000,000 records. Elapsed time: 00:08:04s. Time for last 1,000,000: 1s. Last read position: chr13:37,569,793 INFO 2026-06-03 20:04:34 SinglePassSamProgram Processed 319,000,000 records. Elapsed time: 00:08:06s. Time for last 1,000,000: 1s. Last read position: chr13:42,303,544 INFO 2026-06-03 20:04:35 SinglePassSamProgram Processed 320,000,000 records. Elapsed time: 00:08:08s. Time for last 1,000,000: 1s. Last read position: chr13:50,015,603 INFO 2026-06-03 20:04:37 SinglePassSamProgram Processed 321,000,000 records. Elapsed time: 00:08:09s. Time for last 1,000,000: 1s. Last read position: chr13:94,352,521 INFO 2026-06-03 20:04:39 SinglePassSamProgram Processed 322,000,000 records. Elapsed time: 00:08:11s. Time for last 1,000,000: 1s. Last read position: chr13:109,782,288 INFO 2026-06-03 20:04:41 SinglePassSamProgram Processed 323,000,000 records. Elapsed time: 00:08:13s. Time for last 1,000,000: 1s. Last read position: chr13:113,254,700 INFO 2026-06-03 20:04:42 SinglePassSamProgram Processed 324,000,000 records. Elapsed time: 00:08:14s. Time for last 1,000,000: 1s. Last read position: chr14:21,233,976 INFO 2026-06-03 20:04:44 SinglePassSamProgram Processed 325,000,000 records. Elapsed time: 00:08:16s. Time for last 1,000,000: 1s. Last read position: chr14:23,323,014 INFO 2026-06-03 20:04:45 SinglePassSamProgram Processed 326,000,000 records. Elapsed time: 00:08:17s. Time for last 1,000,000: 1s. Last read position: chr14:24,440,120 INFO 2026-06-03 20:04:47 SinglePassSamProgram Processed 327,000,000 records. Elapsed time: 00:08:19s. Time for last 1,000,000: 1s. Last read position: chr14:49,583,640 INFO 2026-06-03 20:04:48 SinglePassSamProgram Processed 328,000,000 records. Elapsed time: 00:08:20s. Time for last 1,000,000: 1s. Last read position: chr14:55,138,337 INFO 2026-06-03 20:04:49 SinglePassSamProgram Processed 329,000,000 records. Elapsed time: 00:08:21s. Time for last 1,000,000: 1s. Last read position: chr14:64,411,130 INFO 2026-06-03 20:04:51 SinglePassSamProgram Processed 330,000,000 records. Elapsed time: 00:08:23s. Time for last 1,000,000: 1s. Last read position: chr14:69,711,627 INFO 2026-06-03 20:04:52 SinglePassSamProgram Processed 331,000,000 records. Elapsed time: 00:08:24s. Time for last 1,000,000: 1s. Last read position: chr14:74,763,836 INFO 2026-06-03 20:04:54 SinglePassSamProgram Processed 332,000,000 records. Elapsed time: 00:08:26s. Time for last 1,000,000: 1s. Last read position: chr14:77,518,104 INFO 2026-06-03 20:04:55 SinglePassSamProgram Processed 333,000,000 records. Elapsed time: 00:08:27s. Time for last 1,000,000: 1s. Last read position: chr14:92,714,395 INFO 2026-06-03 20:04:56 SinglePassSamProgram Processed 334,000,000 records. Elapsed time: 00:08:28s. Time for last 1,000,000: 1s. Last read position: chr14:100,306,280 INFO 2026-06-03 20:04:58 SinglePassSamProgram Processed 335,000,000 records. Elapsed time: 00:08:30s. Time for last 1,000,000: 1s. Last read position: chr14:102,986,567 INFO 2026-06-03 20:05:00 SinglePassSamProgram Processed 336,000,000 records. Elapsed time: 00:08:32s. Time for last 1,000,000: 1s. Last read position: chr14:104,887,687 INFO 2026-06-03 20:05:01 SinglePassSamProgram Processed 337,000,000 records. Elapsed time: 00:08:33s. Time for last 1,000,000: 1s. Last read position: chr14:105,145,859 INFO 2026-06-03 20:05:02 SinglePassSamProgram Processed 338,000,000 records. Elapsed time: 00:08:34s. Time for last 1,000,000: 1s. Last read position: chr14:105,741,626 INFO 2026-06-03 20:05:04 SinglePassSamProgram Processed 339,000,000 records. Elapsed time: 00:08:36s. Time for last 1,000,000: 1s. Last read position: chr14:105,854,426 INFO 2026-06-03 20:05:06 SinglePassSamProgram Processed 340,000,000 records. Elapsed time: 00:08:38s. Time for last 1,000,000: 1s. Last read position: chr14:105,854,701 INFO 2026-06-03 20:05:07 SinglePassSamProgram Processed 341,000,000 records. Elapsed time: 00:08:40s. Time for last 1,000,000: 1s. Last read position: chr14:105,855,156 INFO 2026-06-03 20:05:09 SinglePassSamProgram Processed 342,000,000 records. Elapsed time: 00:08:41s. Time for last 1,000,000: 1s. Last read position: chr14:105,855,752 INFO 2026-06-03 20:05:10 SinglePassSamProgram Processed 343,000,000 records. Elapsed time: 00:08:42s. Time for last 1,000,000: 1s. Last read position: chr15:22,587,633 INFO 2026-06-03 20:05:11 SinglePassSamProgram Processed 344,000,000 records. Elapsed time: 00:08:44s. Time for last 1,000,000: 1s. Last read position: chr15:32,528,538 INFO 2026-06-03 20:05:13 SinglePassSamProgram Processed 345,000,000 records. Elapsed time: 00:08:45s. Time for last 1,000,000: 1s. Last read position: chr15:40,337,755 INFO 2026-06-03 20:05:14 SinglePassSamProgram Processed 346,000,000 records. Elapsed time: 00:08:46s. Time for last 1,000,000: 1s. Last read position: chr15:42,736,576 INFO 2026-06-03 20:05:16 SinglePassSamProgram Processed 347,000,000 records. Elapsed time: 00:08:48s. Time for last 1,000,000: 1s. Last read position: chr15:45,511,150 INFO 2026-06-03 20:05:17 SinglePassSamProgram Processed 348,000,000 records. Elapsed time: 00:08:49s. Time for last 1,000,000: 1s. Last read position: chr15:52,528,768 INFO 2026-06-03 20:05:18 SinglePassSamProgram Processed 349,000,000 records. Elapsed time: 00:08:50s. Time for last 1,000,000: 1s. Last read position: chr15:62,033,451 INFO 2026-06-03 20:05:20 SinglePassSamProgram Processed 350,000,000 records. Elapsed time: 00:08:52s. Time for last 1,000,000: 1s. Last read position: chr15:65,197,233 INFO 2026-06-03 20:05:22 SinglePassSamProgram Processed 351,000,000 records. Elapsed time: 00:08:54s. Time for last 1,000,000: 1s. Last read position: chr15:70,668,270 INFO 2026-06-03 20:05:24 SinglePassSamProgram Processed 352,000,000 records. Elapsed time: 00:08:56s. Time for last 1,000,000: 1s. Last read position: chr15:74,033,212 INFO 2026-06-03 20:05:25 SinglePassSamProgram Processed 353,000,000 records. Elapsed time: 00:08:57s. Time for last 1,000,000: 1s. Last read position: chr15:75,361,303 INFO 2026-06-03 20:05:27 SinglePassSamProgram Processed 354,000,000 records. Elapsed time: 00:08:59s. Time for last 1,000,000: 1s. Last read position: chr15:80,159,839 INFO 2026-06-03 20:05:28 SinglePassSamProgram Processed 355,000,000 records. Elapsed time: 00:09:00s. Time for last 1,000,000: 1s. Last read position: chr15:84,797,867 INFO 2026-06-03 20:05:30 SinglePassSamProgram Processed 356,000,000 records. Elapsed time: 00:09:02s. Time for last 1,000,000: 1s. Last read position: chr15:90,068,544 INFO 2026-06-03 20:05:32 SinglePassSamProgram Processed 357,000,000 records. Elapsed time: 00:09:04s. Time for last 1,000,000: 1s. Last read position: chr15:99,386,038 INFO 2026-06-03 20:05:33 SinglePassSamProgram Processed 358,000,000 records. Elapsed time: 00:09:05s. Time for last 1,000,000: 1s. Last read position: chr16:655,318 INFO 2026-06-03 20:05:35 SinglePassSamProgram Processed 359,000,000 records. Elapsed time: 00:09:07s. Time for last 1,000,000: 1s. Last read position: chr16:1,788,589 INFO 2026-06-03 20:05:37 SinglePassSamProgram Processed 360,000,000 records. Elapsed time: 00:09:09s. Time for last 1,000,000: 1s. Last read position: chr16:2,253,978 INFO 2026-06-03 20:05:39 SinglePassSamProgram Processed 361,000,000 records. Elapsed time: 00:09:11s. Time for last 1,000,000: 1s. Last read position: chr16:2,766,897 INFO 2026-06-03 20:05:40 SinglePassSamProgram Processed 362,000,000 records. Elapsed time: 00:09:13s. Time for last 1,000,000: 1s. Last read position: chr16:3,731,276 INFO 2026-06-03 20:05:42 SinglePassSamProgram Processed 363,000,000 records. Elapsed time: 00:09:14s. Time for last 1,000,000: 1s. Last read position: chr16:10,879,032 INFO 2026-06-03 20:05:43 SinglePassSamProgram Processed 364,000,000 records. Elapsed time: 00:09:15s. Time for last 1,000,000: 1s. Last read position: chr16:14,919,068 INFO 2026-06-03 20:05:44 SinglePassSamProgram Processed 365,000,000 records. Elapsed time: 00:09:17s. Time for last 1,000,000: 1s. Last read position: chr16:15,735,516 INFO 2026-06-03 20:05:46 SinglePassSamProgram Processed 366,000,000 records. Elapsed time: 00:09:18s. Time for last 1,000,000: 1s. Last read position: chr16:16,367,806 INFO 2026-06-03 20:05:48 SinglePassSamProgram Processed 367,000,000 records. Elapsed time: 00:09:20s. Time for last 1,000,000: 1s. Last read position: chr16:18,387,011 INFO 2026-06-03 20:05:49 SinglePassSamProgram Processed 368,000,000 records. Elapsed time: 00:09:21s. Time for last 1,000,000: 1s. Last read position: chr16:21,402,751 INFO 2026-06-03 20:05:50 SinglePassSamProgram Processed 369,000,000 records. Elapsed time: 00:09:23s. Time for last 1,000,000: 1s. Last read position: chr16:21,834,749 INFO 2026-06-03 20:05:52 SinglePassSamProgram Processed 370,000,000 records. Elapsed time: 00:09:24s. Time for last 1,000,000: 1s. Last read position: chr16:22,459,481 INFO 2026-06-03 20:05:53 SinglePassSamProgram Processed 371,000,000 records. Elapsed time: 00:09:25s. Time for last 1,000,000: 1s. Last read position: chr16:22,536,024 INFO 2026-06-03 20:05:55 SinglePassSamProgram Processed 372,000,000 records. Elapsed time: 00:09:27s. Time for last 1,000,000: 1s. Last read position: chr16:28,537,579 INFO 2026-06-03 20:05:56 SinglePassSamProgram Processed 373,000,000 records. Elapsed time: 00:09:29s. Time for last 1,000,000: 1s. Last read position: chr16:29,385,481 INFO 2026-06-03 20:05:58 SinglePassSamProgram Processed 374,000,000 records. Elapsed time: 00:09:30s. Time for last 1,000,000: 1s. Last read position: chr16:29,816,978 INFO 2026-06-03 20:06:00 SinglePassSamProgram Processed 375,000,000 records. Elapsed time: 00:09:32s. Time for last 1,000,000: 1s. Last read position: chr16:30,225,516 INFO 2026-06-03 20:06:01 SinglePassSamProgram Processed 376,000,000 records. Elapsed time: 00:09:33s. Time for last 1,000,000: 1s. Last read position: chr16:30,738,809 INFO 2026-06-03 20:06:03 SinglePassSamProgram Processed 377,000,000 records. Elapsed time: 00:09:35s. Time for last 1,000,000: 1s. Last read position: chr16:31,477,389 INFO 2026-06-03 20:06:04 SinglePassSamProgram Processed 378,000,000 records. Elapsed time: 00:09:37s. Time for last 1,000,000: 1s. Last read position: chr16:55,479,486 INFO 2026-06-03 20:06:06 SinglePassSamProgram Processed 379,000,000 records. Elapsed time: 00:09:38s. Time for last 1,000,000: 1s. Last read position: chr16:57,661,913 INFO 2026-06-03 20:06:08 SinglePassSamProgram Processed 380,000,000 records. Elapsed time: 00:09:40s. Time for last 1,000,000: 1s. Last read position: chr16:67,390,263 INFO 2026-06-03 20:06:10 SinglePassSamProgram Processed 381,000,000 records. Elapsed time: 00:09:42s. Time for last 1,000,000: 1s. Last read position: chr16:69,196,102 INFO 2026-06-03 20:06:11 SinglePassSamProgram Processed 382,000,000 records. Elapsed time: 00:09:43s. Time for last 1,000,000: 1s. Last read position: chr16:72,096,305 INFO 2026-06-03 20:06:13 SinglePassSamProgram Processed 383,000,000 records. Elapsed time: 00:09:45s. Time for last 1,000,000: 1s. Last read position: chr16:81,163,682 INFO 2026-06-03 20:06:15 SinglePassSamProgram Processed 384,000,000 records. Elapsed time: 00:09:47s. Time for last 1,000,000: 1s. Last read position: chr16:88,428,700 INFO 2026-06-03 20:06:17 SinglePassSamProgram Processed 385,000,000 records. Elapsed time: 00:09:49s. Time for last 1,000,000: 1s. Last read position: chr16:88,654,785 INFO 2026-06-03 20:06:18 SinglePassSamProgram Processed 386,000,000 records. Elapsed time: 00:09:51s. Time for last 1,000,000: 1s. Last read position: chr16:89,722,825 INFO 2026-06-03 20:06:20 SinglePassSamProgram Processed 387,000,000 records. Elapsed time: 00:09:52s. Time for last 1,000,000: 1s. Last read position: chr17:1,562,511 INFO 2026-06-03 20:06:22 SinglePassSamProgram Processed 388,000,000 records. Elapsed time: 00:09:54s. Time for last 1,000,000: 1s. Last read position: chr17:2,704,367 INFO 2026-06-03 20:06:23 SinglePassSamProgram Processed 389,000,000 records. Elapsed time: 00:09:55s. Time for last 1,000,000: 1s. Last read position: chr17:4,972,808 INFO 2026-06-03 20:06:25 SinglePassSamProgram Processed 390,000,000 records. Elapsed time: 00:09:57s. Time for last 1,000,000: 1s. Last read position: chr17:7,325,318 INFO 2026-06-03 20:06:26 SinglePassSamProgram Processed 391,000,000 records. Elapsed time: 00:09:58s. Time for last 1,000,000: 1s. Last read position: chr17:7,580,025 INFO 2026-06-03 20:06:27 SinglePassSamProgram Processed 392,000,000 records. Elapsed time: 00:10:00s. Time for last 1,000,000: 1s. Last read position: chr17:8,475,761 INFO 2026-06-03 20:06:29 SinglePassSamProgram Processed 393,000,000 records. Elapsed time: 00:10:01s. Time for last 1,000,000: 1s. Last read position: chr17:17,173,938 INFO 2026-06-03 20:06:30 SinglePassSamProgram Processed 394,000,000 records. Elapsed time: 00:10:02s. Time for last 1,000,000: 1s. Last read position: chr17:19,380,956 INFO 2026-06-03 20:06:31 SinglePassSamProgram Processed 395,000,000 records. Elapsed time: 00:10:04s. Time for last 1,000,000: 1s. Last read position: chr17:28,749,650 INFO 2026-06-03 20:06:33 SinglePassSamProgram Processed 396,000,000 records. Elapsed time: 00:10:05s. Time for last 1,000,000: 1s. Last read position: chr17:32,142,494 INFO 2026-06-03 20:06:34 SinglePassSamProgram Processed 397,000,000 records. Elapsed time: 00:10:06s. Time for last 1,000,000: 1s. Last read position: chr17:36,953,137 INFO 2026-06-03 20:06:36 SinglePassSamProgram Processed 398,000,000 records. Elapsed time: 00:10:08s. Time for last 1,000,000: 1s. Last read position: chr17:38,898,409 INFO 2026-06-03 20:06:37 SinglePassSamProgram Processed 399,000,000 records. Elapsed time: 00:10:09s. Time for last 1,000,000: 1s. Last read position: chr17:40,093,138 INFO 2026-06-03 20:06:39 SinglePassSamProgram Processed 400,000,000 records. Elapsed time: 00:10:11s. Time for last 1,000,000: 1s. Last read position: chr17:41,771,682 INFO 2026-06-03 20:06:40 SinglePassSamProgram Processed 401,000,000 records. Elapsed time: 00:10:12s. Time for last 1,000,000: 1s. Last read position: chr17:42,707,961 INFO 2026-06-03 20:06:42 SinglePassSamProgram Processed 402,000,000 records. Elapsed time: 00:10:14s. Time for last 1,000,000: 1s. Last read position: chr17:44,880,602 INFO 2026-06-03 20:06:43 SinglePassSamProgram Processed 403,000,000 records. Elapsed time: 00:10:15s. Time for last 1,000,000: 1s. Last read position: chr17:47,017,333 INFO 2026-06-03 20:06:44 SinglePassSamProgram Processed 404,000,000 records. Elapsed time: 00:10:16s. Time for last 1,000,000: 1s. Last read position: chr17:50,149,257 INFO 2026-06-03 20:06:46 SinglePassSamProgram Processed 405,000,000 records. Elapsed time: 00:10:18s. Time for last 1,000,000: 1s. Last read position: chr17:50,185,548 INFO 2026-06-03 20:06:48 SinglePassSamProgram Processed 406,000,000 records. Elapsed time: 00:10:20s. Time for last 1,000,000: 1s. Last read position: chr17:50,185,931 INFO 2026-06-03 20:06:49 SinglePassSamProgram Processed 407,000,000 records. Elapsed time: 00:10:21s. Time for last 1,000,000: 1s. Last read position: chr17:50,186,506 INFO 2026-06-03 20:06:51 SinglePassSamProgram Processed 408,000,000 records. Elapsed time: 00:10:23s. Time for last 1,000,000: 1s. Last read position: chr17:50,186,874 INFO 2026-06-03 20:06:53 SinglePassSamProgram Processed 409,000,000 records. Elapsed time: 00:10:25s. Time for last 1,000,000: 1s. Last read position: chr17:50,187,052 INFO 2026-06-03 20:06:55 SinglePassSamProgram Processed 410,000,000 records. Elapsed time: 00:10:27s. Time for last 1,000,000: 1s. Last read position: chr17:50,187,511 INFO 2026-06-03 20:06:56 SinglePassSamProgram Processed 411,000,000 records. Elapsed time: 00:10:28s. Time for last 1,000,000: 1s. Last read position: chr17:50,187,941 INFO 2026-06-03 20:06:57 SinglePassSamProgram Processed 412,000,000 records. Elapsed time: 00:10:30s. Time for last 1,000,000: 1s. Last read position: chr17:50,188,119 INFO 2026-06-03 20:06:59 SinglePassSamProgram Processed 413,000,000 records. Elapsed time: 00:10:31s. Time for last 1,000,000: 1s. Last read position: chr17:50,188,578 INFO 2026-06-03 20:07:01 SinglePassSamProgram Processed 414,000,000 records. Elapsed time: 00:10:33s. Time for last 1,000,000: 1s. Last read position: chr17:50,188,775 INFO 2026-06-03 20:07:03 SinglePassSamProgram Processed 415,000,000 records. Elapsed time: 00:10:35s. Time for last 1,000,000: 1s. Last read position: chr17:50,188,992 INFO 2026-06-03 20:07:05 SinglePassSamProgram Processed 416,000,000 records. Elapsed time: 00:10:37s. Time for last 1,000,000: 1s. Last read position: chr17:50,189,396 INFO 2026-06-03 20:07:06 SinglePassSamProgram Processed 417,000,000 records. Elapsed time: 00:10:38s. Time for last 1,000,000: 1s. Last read position: chr17:50,189,483 INFO 2026-06-03 20:07:08 SinglePassSamProgram Processed 418,000,000 records. Elapsed time: 00:10:40s. Time for last 1,000,000: 2s. Last read position: chr17:50,189,685 INFO 2026-06-03 20:07:10 SinglePassSamProgram Processed 419,000,000 records. Elapsed time: 00:10:42s. Time for last 1,000,000: 1s. Last read position: chr17:50,189,902 INFO 2026-06-03 20:07:11 SinglePassSamProgram Processed 420,000,000 records. Elapsed time: 00:10:44s. Time for last 1,000,000: 1s. Last read position: chr17:50,190,038 INFO 2026-06-03 20:07:13 SinglePassSamProgram Processed 421,000,000 records. Elapsed time: 00:10:45s. Time for last 1,000,000: 1s. Last read position: chr17:50,190,332 INFO 2026-06-03 20:07:14 SinglePassSamProgram Processed 422,000,000 records. Elapsed time: 00:10:46s. Time for last 1,000,000: 1s. Last read position: chr17:50,190,823 INFO 2026-06-03 20:07:16 SinglePassSamProgram Processed 423,000,000 records. Elapsed time: 00:10:48s. Time for last 1,000,000: 1s. Last read position: chr17:50,191,392 INFO 2026-06-03 20:07:17 SinglePassSamProgram Processed 424,000,000 records. Elapsed time: 00:10:49s. Time for last 1,000,000: 1s. Last read position: chr17:50,191,818 INFO 2026-06-03 20:07:18 SinglePassSamProgram Processed 425,000,000 records. Elapsed time: 00:10:50s. Time for last 1,000,000: 1s. Last read position: chr17:50,192,473 INFO 2026-06-03 20:07:20 SinglePassSamProgram Processed 426,000,000 records. Elapsed time: 00:10:52s. Time for last 1,000,000: 1s. Last read position: chr17:50,192,666 INFO 2026-06-03 20:07:22 SinglePassSamProgram Processed 427,000,000 records. Elapsed time: 00:10:54s. Time for last 1,000,000: 2s. Last read position: chr17:50,192,836 INFO 2026-06-03 20:07:24 SinglePassSamProgram Processed 428,000,000 records. Elapsed time: 00:10:56s. Time for last 1,000,000: 1s. Last read position: chr17:50,193,946 INFO 2026-06-03 20:07:26 SinglePassSamProgram Processed 429,000,000 records. Elapsed time: 00:10:58s. Time for last 1,000,000: 1s. Last read position: chr17:50,194,019 INFO 2026-06-03 20:07:28 SinglePassSamProgram Processed 430,000,000 records. Elapsed time: 00:11:00s. Time for last 1,000,000: 1s. Last read position: chr17:50,194,363 INFO 2026-06-03 20:07:30 SinglePassSamProgram Processed 431,000,000 records. Elapsed time: 00:11:02s. Time for last 1,000,000: 1s. Last read position: chr17:50,194,582 INFO 2026-06-03 20:07:32 SinglePassSamProgram Processed 432,000,000 records. Elapsed time: 00:11:04s. Time for last 1,000,000: 1s. Last read position: chr17:50,194,747 INFO 2026-06-03 20:07:34 SinglePassSamProgram Processed 433,000,000 records. Elapsed time: 00:11:06s. Time for last 1,000,000: 1s. Last read position: chr17:50,195,070 INFO 2026-06-03 20:07:35 SinglePassSamProgram Processed 434,000,000 records. Elapsed time: 00:11:07s. Time for last 1,000,000: 1s. Last read position: chr17:50,195,448 INFO 2026-06-03 20:07:36 SinglePassSamProgram Processed 435,000,000 records. Elapsed time: 00:11:09s. Time for last 1,000,000: 1s. Last read position: chr17:50,195,598 INFO 2026-06-03 20:07:38 SinglePassSamProgram Processed 436,000,000 records. Elapsed time: 00:11:10s. Time for last 1,000,000: 1s. Last read position: chr17:50,195,954 INFO 2026-06-03 20:07:39 SinglePassSamProgram Processed 437,000,000 records. Elapsed time: 00:11:11s. Time for last 1,000,000: 1s. Last read position: chr17:50,196,169 INFO 2026-06-03 20:07:41 SinglePassSamProgram Processed 438,000,000 records. Elapsed time: 00:11:13s. Time for last 1,000,000: 1s. Last read position: chr17:50,196,328 INFO 2026-06-03 20:07:43 SinglePassSamProgram Processed 439,000,000 records. Elapsed time: 00:11:15s. Time for last 1,000,000: 2s. Last read position: chr17:50,196,509 INFO 2026-06-03 20:07:45 SinglePassSamProgram Processed 440,000,000 records. Elapsed time: 00:11:17s. Time for last 1,000,000: 2s. Last read position: chr17:50,196,653 INFO 2026-06-03 20:07:47 SinglePassSamProgram Processed 441,000,000 records. Elapsed time: 00:11:19s. Time for last 1,000,000: 1s. Last read position: chr17:50,197,048 INFO 2026-06-03 20:07:49 SinglePassSamProgram Processed 442,000,000 records. Elapsed time: 00:11:21s. Time for last 1,000,000: 2s. Last read position: chr17:50,197,744 INFO 2026-06-03 20:07:51 SinglePassSamProgram Processed 443,000,000 records. Elapsed time: 00:11:23s. Time for last 1,000,000: 1s. Last read position: chr17:50,198,173 INFO 2026-06-03 20:07:52 SinglePassSamProgram Processed 444,000,000 records. Elapsed time: 00:11:24s. Time for last 1,000,000: 1s. Last read position: chr17:50,198,495 INFO 2026-06-03 20:07:53 SinglePassSamProgram Processed 445,000,000 records. Elapsed time: 00:11:26s. Time for last 1,000,000: 1s. Last read position: chr17:50,199,269 INFO 2026-06-03 20:07:55 SinglePassSamProgram Processed 446,000,000 records. Elapsed time: 00:11:27s. Time for last 1,000,000: 1s. Last read position: chr17:50,199,435 INFO 2026-06-03 20:07:56 SinglePassSamProgram Processed 447,000,000 records. Elapsed time: 00:11:28s. Time for last 1,000,000: 1s. Last read position: chr17:50,199,820 INFO 2026-06-03 20:07:57 SinglePassSamProgram Processed 448,000,000 records. Elapsed time: 00:11:29s. Time for last 1,000,000: 1s. Last read position: chr17:50,385,160 INFO 2026-06-03 20:07:58 SinglePassSamProgram Processed 449,000,000 records. Elapsed time: 00:11:30s. Time for last 1,000,000: 1s. Last read position: chr17:59,661,452 INFO 2026-06-03 20:07:59 SinglePassSamProgram Processed 450,000,000 records. Elapsed time: 00:11:31s. Time for last 1,000,000: 1s. Last read position: chr17:63,415,608 INFO 2026-06-03 20:08:01 SinglePassSamProgram Processed 451,000,000 records. Elapsed time: 00:11:33s. Time for last 1,000,000: 1s. Last read position: chr17:65,961,587 INFO 2026-06-03 20:08:02 SinglePassSamProgram Processed 452,000,000 records. Elapsed time: 00:11:34s. Time for last 1,000,000: 1s. Last read position: chr17:73,235,523 INFO 2026-06-03 20:08:04 SinglePassSamProgram Processed 453,000,000 records. Elapsed time: 00:11:36s. Time for last 1,000,000: 1s. Last read position: chr17:75,671,815 INFO 2026-06-03 20:08:06 SinglePassSamProgram Processed 454,000,000 records. Elapsed time: 00:11:38s. Time for last 1,000,000: 1s. Last read position: chr17:77,402,256 INFO 2026-06-03 20:08:07 SinglePassSamProgram Processed 455,000,000 records. Elapsed time: 00:11:39s. Time for last 1,000,000: 1s. Last read position: chr17:80,140,027 INFO 2026-06-03 20:08:09 SinglePassSamProgram Processed 456,000,000 records. Elapsed time: 00:11:41s. Time for last 1,000,000: 1s. Last read position: chr17:81,550,921 INFO 2026-06-03 20:08:10 SinglePassSamProgram Processed 457,000,000 records. Elapsed time: 00:11:42s. Time for last 1,000,000: 1s. Last read position: chr17:82,086,485 INFO 2026-06-03 20:08:11 SinglePassSamProgram Processed 458,000,000 records. Elapsed time: 00:11:43s. Time for last 1,000,000: 1s. Last read position: chr18:3,277,364 INFO 2026-06-03 20:08:12 SinglePassSamProgram Processed 459,000,000 records. Elapsed time: 00:11:44s. Time for last 1,000,000: 1s. Last read position: chr18:15,010,480 INFO 2026-06-03 20:08:14 SinglePassSamProgram Processed 460,000,000 records. Elapsed time: 00:11:46s. Time for last 1,000,000: 1s. Last read position: chr18:45,865,714 INFO 2026-06-03 20:08:15 SinglePassSamProgram Processed 461,000,000 records. Elapsed time: 00:11:47s. Time for last 1,000,000: 1s. Last read position: chr18:62,102,792 INFO 2026-06-03 20:08:17 SinglePassSamProgram Processed 462,000,000 records. Elapsed time: 00:11:49s. Time for last 1,000,000: 1s. Last read position: chr19:582,519 INFO 2026-06-03 20:08:18 SinglePassSamProgram Processed 463,000,000 records. Elapsed time: 00:11:50s. Time for last 1,000,000: 1s. Last read position: chr19:1,108,672 INFO 2026-06-03 20:08:20 SinglePassSamProgram Processed 464,000,000 records. Elapsed time: 00:11:52s. Time for last 1,000,000: 1s. Last read position: chr19:1,863,057 INFO 2026-06-03 20:08:21 SinglePassSamProgram Processed 465,000,000 records. Elapsed time: 00:11:53s. Time for last 1,000,000: 1s. Last read position: chr19:3,433,522 INFO 2026-06-03 20:08:22 SinglePassSamProgram Processed 466,000,000 records. Elapsed time: 00:11:55s. Time for last 1,000,000: 1s. Last read position: chr19:4,511,476 INFO 2026-06-03 20:08:24 SinglePassSamProgram Processed 467,000,000 records. Elapsed time: 00:11:56s. Time for last 1,000,000: 1s. Last read position: chr19:5,621,366 INFO 2026-06-03 20:08:25 SinglePassSamProgram Processed 468,000,000 records. Elapsed time: 00:11:58s. Time for last 1,000,000: 1s. Last read position: chr19:6,697,714 INFO 2026-06-03 20:08:27 SinglePassSamProgram Processed 469,000,000 records. Elapsed time: 00:11:59s. Time for last 1,000,000: 1s. Last read position: chr19:7,869,860 INFO 2026-06-03 20:08:28 SinglePassSamProgram Processed 470,000,000 records. Elapsed time: 00:12:00s. Time for last 1,000,000: 1s. Last read position: chr19:9,980,805 INFO 2026-06-03 20:08:29 SinglePassSamProgram Processed 471,000,000 records. Elapsed time: 00:12:01s. Time for last 1,000,000: 1s. Last read position: chr19:10,793,820 INFO 2026-06-03 20:08:30 SinglePassSamProgram Processed 472,000,000 records. Elapsed time: 00:12:02s. Time for last 1,000,000: 1s. Last read position: chr19:12,015,535 INFO 2026-06-03 20:08:31 SinglePassSamProgram Processed 473,000,000 records. Elapsed time: 00:12:03s. Time for last 1,000,000: 1s. Last read position: chr19:13,153,196 INFO 2026-06-03 20:08:33 SinglePassSamProgram Processed 474,000,000 records. Elapsed time: 00:12:05s. Time for last 1,000,000: 1s. Last read position: chr19:14,621,714 INFO 2026-06-03 20:08:34 SinglePassSamProgram Processed 475,000,000 records. Elapsed time: 00:12:06s. Time for last 1,000,000: 1s. Last read position: chr19:15,256,931 INFO 2026-06-03 20:08:35 SinglePassSamProgram Processed 476,000,000 records. Elapsed time: 00:12:07s. Time for last 1,000,000: 1s. Last read position: chr19:16,829,503 INFO 2026-06-03 20:08:36 SinglePassSamProgram Processed 477,000,000 records. Elapsed time: 00:12:08s. Time for last 1,000,000: 1s. Last read position: chr19:17,862,178 INFO 2026-06-03 20:08:38 SinglePassSamProgram Processed 478,000,000 records. Elapsed time: 00:12:10s. Time for last 1,000,000: 1s. Last read position: chr19:18,782,908 INFO 2026-06-03 20:08:39 SinglePassSamProgram Processed 479,000,000 records. Elapsed time: 00:12:11s. Time for last 1,000,000: 1s. Last read position: chr19:20,369,816 INFO 2026-06-03 20:08:40 SinglePassSamProgram Processed 480,000,000 records. Elapsed time: 00:12:12s. Time for last 1,000,000: 1s. Last read position: chr19:35,121,236 INFO 2026-06-03 20:08:42 SinglePassSamProgram Processed 481,000,000 records. Elapsed time: 00:12:14s. Time for last 1,000,000: 1s. Last read position: chr19:36,016,098 INFO 2026-06-03 20:08:43 SinglePassSamProgram Processed 482,000,000 records. Elapsed time: 00:12:15s. Time for last 1,000,000: 1s. Last read position: chr19:38,840,518 INFO 2026-06-03 20:08:44 SinglePassSamProgram Processed 483,000,000 records. Elapsed time: 00:12:16s. Time for last 1,000,000: 0s. Last read position: chr19:39,433,398 INFO 2026-06-03 20:08:45 SinglePassSamProgram Processed 484,000,000 records. Elapsed time: 00:12:17s. Time for last 1,000,000: 1s. Last read position: chr19:40,691,981 INFO 2026-06-03 20:08:46 SinglePassSamProgram Processed 485,000,000 records. Elapsed time: 00:12:18s. Time for last 1,000,000: 0s. Last read position: chr19:42,226,107 INFO 2026-06-03 20:08:47 SinglePassSamProgram Processed 486,000,000 records. Elapsed time: 00:12:19s. Time for last 1,000,000: 1s. Last read position: chr19:42,352,399 INFO 2026-06-03 20:08:48 SinglePassSamProgram Processed 487,000,000 records. Elapsed time: 00:12:20s. Time for last 1,000,000: 1s. Last read position: chr19:45,140,564 INFO 2026-06-03 20:08:49 SinglePassSamProgram Processed 488,000,000 records. Elapsed time: 00:12:21s. Time for last 1,000,000: 1s. Last read position: chr19:45,831,450 INFO 2026-06-03 20:08:50 SinglePassSamProgram Processed 489,000,000 records. Elapsed time: 00:12:22s. Time for last 1,000,000: 0s. Last read position: chr19:47,701,756 INFO 2026-06-03 20:08:51 SinglePassSamProgram Processed 490,000,000 records. Elapsed time: 00:12:23s. Time for last 1,000,000: 1s. Last read position: chr19:48,965,515 INFO 2026-06-03 20:08:52 SinglePassSamProgram Processed 491,000,000 records. Elapsed time: 00:12:24s. Time for last 1,000,000: 1s. Last read position: chr19:49,534,359 INFO 2026-06-03 20:08:53 SinglePassSamProgram Processed 492,000,000 records. Elapsed time: 00:12:26s. Time for last 1,000,000: 1s. Last read position: chr19:49,909,064 INFO 2026-06-03 20:08:54 SinglePassSamProgram Processed 493,000,000 records. Elapsed time: 00:12:27s. Time for last 1,000,000: 0s. Last read position: chr19:53,237,872 INFO 2026-06-03 20:08:55 SinglePassSamProgram Processed 494,000,000 records. Elapsed time: 00:12:28s. Time for last 1,000,000: 1s. Last read position: chr19:54,461,595 INFO 2026-06-03 20:08:57 SinglePassSamProgram Processed 495,000,000 records. Elapsed time: 00:12:29s. Time for last 1,000,000: 1s. Last read position: chr19:55,644,967 INFO 2026-06-03 20:08:58 SinglePassSamProgram Processed 496,000,000 records. Elapsed time: 00:12:30s. Time for last 1,000,000: 1s. Last read position: chr19:58,246,367 INFO 2026-06-03 20:08:59 SinglePassSamProgram Processed 497,000,000 records. Elapsed time: 00:12:31s. Time for last 1,000,000: 1s. Last read position: chr20:2,800,400 INFO 2026-06-03 20:09:01 SinglePassSamProgram Processed 498,000,000 records. Elapsed time: 00:12:33s. Time for last 1,000,000: 1s. Last read position: chr20:5,557,967 INFO 2026-06-03 20:09:02 SinglePassSamProgram Processed 499,000,000 records. Elapsed time: 00:12:34s. Time for last 1,000,000: 1s. Last read position: chr20:17,660,325 INFO 2026-06-03 20:09:03 SinglePassSamProgram Processed 500,000,000 records. Elapsed time: 00:12:35s. Time for last 1,000,000: 1s. Last read position: chr20:32,326,861 INFO 2026-06-03 20:09:04 SinglePassSamProgram Processed 501,000,000 records. Elapsed time: 00:12:36s. Time for last 1,000,000: 1s. Last read position: chr20:35,626,715 INFO 2026-06-03 20:09:05 SinglePassSamProgram Processed 502,000,000 records. Elapsed time: 00:12:37s. Time for last 1,000,000: 1s. Last read position: chr20:38,641,778 INFO 2026-06-03 20:09:06 SinglePassSamProgram Processed 503,000,000 records. Elapsed time: 00:12:38s. Time for last 1,000,000: 1s. Last read position: chr20:45,253,082 INFO 2026-06-03 20:09:07 SinglePassSamProgram Processed 504,000,000 records. Elapsed time: 00:12:39s. Time for last 1,000,000: 1s. Last read position: chr20:47,702,632 INFO 2026-06-03 20:09:08 SinglePassSamProgram Processed 505,000,000 records. Elapsed time: 00:12:40s. Time for last 1,000,000: 1s. Last read position: chr20:53,576,607 INFO 2026-06-03 20:09:09 SinglePassSamProgram Processed 506,000,000 records. Elapsed time: 00:12:41s. Time for last 1,000,000: 1s. Last read position: chr20:62,006,742 INFO 2026-06-03 20:09:10 SinglePassSamProgram Processed 507,000,000 records. Elapsed time: 00:12:42s. Time for last 1,000,000: 1s. Last read position: chr20:63,493,151 INFO 2026-06-03 20:09:11 SinglePassSamProgram Processed 508,000,000 records. Elapsed time: 00:12:43s. Time for last 1,000,000: 1s. Last read position: chr21:5,035,419 INFO 2026-06-03 20:09:13 SinglePassSamProgram Processed 509,000,000 records. Elapsed time: 00:12:45s. Time for last 1,000,000: 1s. Last read position: chr21:8,216,811 INFO 2026-06-03 20:09:14 SinglePassSamProgram Processed 510,000,000 records. Elapsed time: 00:12:46s. Time for last 1,000,000: 1s. Last read position: chr21:8,258,927 INFO 2026-06-03 20:09:15 SinglePassSamProgram Processed 511,000,000 records. Elapsed time: 00:12:47s. Time for last 1,000,000: 1s. Last read position: chr21:8,399,118 INFO 2026-06-03 20:09:17 SinglePassSamProgram Processed 512,000,000 records. Elapsed time: 00:12:49s. Time for last 1,000,000: 1s. Last read position: chr21:8,441,951 INFO 2026-06-03 20:09:18 SinglePassSamProgram Processed 513,000,000 records. Elapsed time: 00:12:50s. Time for last 1,000,000: 1s. Last read position: chr21:8,444,541 INFO 2026-06-03 20:09:19 SinglePassSamProgram Processed 514,000,000 records. Elapsed time: 00:12:51s. Time for last 1,000,000: 1s. Last read position: chr21:29,555,054 INFO 2026-06-03 20:09:20 SinglePassSamProgram Processed 515,000,000 records. Elapsed time: 00:12:52s. Time for last 1,000,000: 1s. Last read position: chr21:34,886,999 INFO 2026-06-03 20:09:21 SinglePassSamProgram Processed 516,000,000 records. Elapsed time: 00:12:53s. Time for last 1,000,000: 1s. Last read position: chr21:42,852,254 INFO 2026-06-03 20:09:22 SinglePassSamProgram Processed 517,000,000 records. Elapsed time: 00:12:54s. Time for last 1,000,000: 1s. Last read position: chr21:45,456,133 INFO 2026-06-03 20:09:23 SinglePassSamProgram Processed 518,000,000 records. Elapsed time: 00:12:55s. Time for last 1,000,000: 1s. Last read position: chr21:45,989,619 INFO 2026-06-03 20:09:24 SinglePassSamProgram Processed 519,000,000 records. Elapsed time: 00:12:56s. Time for last 1,000,000: 1s. Last read position: chr21:45,998,897 INFO 2026-06-03 20:09:25 SinglePassSamProgram Processed 520,000,000 records. Elapsed time: 00:12:57s. Time for last 1,000,000: 1s. Last read position: chr21:46,114,051 INFO 2026-06-03 20:09:27 SinglePassSamProgram Processed 521,000,000 records. Elapsed time: 00:12:59s. Time for last 1,000,000: 1s. Last read position: chr21:46,129,031 INFO 2026-06-03 20:09:28 SinglePassSamProgram Processed 522,000,000 records. Elapsed time: 00:13:00s. Time for last 1,000,000: 1s. Last read position: chr22:18,536,745 INFO 2026-06-03 20:09:30 SinglePassSamProgram Processed 523,000,000 records. Elapsed time: 00:13:02s. Time for last 1,000,000: 1s. Last read position: chr22:21,695,022 INFO 2026-06-03 20:09:31 SinglePassSamProgram Processed 524,000,000 records. Elapsed time: 00:13:03s. Time for last 1,000,000: 1s. Last read position: chr22:24,187,254 INFO 2026-06-03 20:09:33 SinglePassSamProgram Processed 525,000,000 records. Elapsed time: 00:13:05s. Time for last 1,000,000: 1s. Last read position: chr22:29,286,928 INFO 2026-06-03 20:09:34 SinglePassSamProgram Processed 526,000,000 records. Elapsed time: 00:13:06s. Time for last 1,000,000: 1s. Last read position: chr22:31,088,528 INFO 2026-06-03 20:09:35 SinglePassSamProgram Processed 527,000,000 records. Elapsed time: 00:13:07s. Time for last 1,000,000: 1s. Last read position: chr22:36,285,865 INFO 2026-06-03 20:09:36 SinglePassSamProgram Processed 528,000,000 records. Elapsed time: 00:13:08s. Time for last 1,000,000: 1s. Last read position: chr22:37,678,681 INFO 2026-06-03 20:09:37 SinglePassSamProgram Processed 529,000,000 records. Elapsed time: 00:13:09s. Time for last 1,000,000: 1s. Last read position: chr22:39,045,020 INFO 2026-06-03 20:09:39 SinglePassSamProgram Processed 530,000,000 records. Elapsed time: 00:13:11s. Time for last 1,000,000: 1s. Last read position: chr22:41,258,016 INFO 2026-06-03 20:09:40 SinglePassSamProgram Processed 531,000,000 records. Elapsed time: 00:13:12s. Time for last 1,000,000: 1s. Last read position: chr22:45,168,205 INFO 2026-06-03 20:09:42 SinglePassSamProgram Processed 532,000,000 records. Elapsed time: 00:13:14s. Time for last 1,000,000: 1s. Last read position: chr22:49,909,914 INFO 2026-06-03 20:09:44 SinglePassSamProgram Processed 533,000,000 records. Elapsed time: 00:13:16s. Time for last 1,000,000: 1s. Last read position: chr22:50,468,446 INFO 2026-06-03 20:09:45 SinglePassSamProgram Processed 534,000,000 records. Elapsed time: 00:13:17s. Time for last 1,000,000: 1s. Last read position: chrX:2,714,442 INFO 2026-06-03 20:09:46 SinglePassSamProgram Processed 535,000,000 records. Elapsed time: 00:13:18s. Time for last 1,000,000: 0s. Last read position: chrX:3,323,210 INFO 2026-06-03 20:09:47 SinglePassSamProgram Processed 536,000,000 records. Elapsed time: 00:13:19s. Time for last 1,000,000: 1s. Last read position: chrX:20,209,345 INFO 2026-06-03 20:09:49 SinglePassSamProgram Processed 537,000,000 records. Elapsed time: 00:13:21s. Time for last 1,000,000: 1s. Last read position: chrX:45,148,408 INFO 2026-06-03 20:09:50 SinglePassSamProgram Processed 538,000,000 records. Elapsed time: 00:13:22s. Time for last 1,000,000: 1s. Last read position: chrX:49,040,467 INFO 2026-06-03 20:09:51 SinglePassSamProgram Processed 539,000,000 records. Elapsed time: 00:13:23s. Time for last 1,000,000: 1s. Last read position: chrX:53,617,134 INFO 2026-06-03 20:09:52 SinglePassSamProgram Processed 540,000,000 records. Elapsed time: 00:13:24s. Time for last 1,000,000: 1s. Last read position: chrX:71,299,966 INFO 2026-06-03 20:09:53 SinglePassSamProgram Processed 541,000,000 records. Elapsed time: 00:13:25s. Time for last 1,000,000: 1s. Last read position: chrX:81,202,234 INFO 2026-06-03 20:09:54 SinglePassSamProgram Processed 542,000,000 records. Elapsed time: 00:13:26s. Time for last 1,000,000: 1s. Last read position: chrX:119,240,392 INFO 2026-06-03 20:09:55 SinglePassSamProgram Processed 543,000,000 records. Elapsed time: 00:13:27s. Time for last 1,000,000: 1s. Last read position: chrX:139,796,452 INFO 2026-06-03 20:09:56 SinglePassSamProgram Processed 544,000,000 records. Elapsed time: 00:13:28s. Time for last 1,000,000: 1s. Last read position: chrX:153,952,846 INFO 2026-06-03 20:09:57 SinglePassSamProgram Processed 545,000,000 records. Elapsed time: 00:13:29s. Time for last 1,000,000: 1s. Last read position: chrX:154,367,436 INFO 2026-06-03 20:09:58 SinglePassSamProgram Processed 546,000,000 records. Elapsed time: 00:13:31s. Time for last 1,000,000: 1s. Last read position: GL000194.1:56,357 INFO 2026-06-03 20:09:59 SinglePassSamProgram Processed 547,000,000 records. Elapsed time: 00:13:32s. Time for last 1,000,000: 0s. Last read position: GL000220.1:116,272 INFO 2026-06-03 20:10:01 SinglePassSamProgram Processed 548,000,000 records. Elapsed time: 00:13:33s. Time for last 1,000,000: 1s. Last read position: GL000220.1:158,128 INFO 2026-06-03 20:10:02 SinglePassSamProgram Processed 549,000,000 records. Elapsed time: 00:13:34s. Time for last 1,000,000: 1s. Last read position: GL000220.1:160,730 INFO 2026-06-03 20:10:04 SinglePassSamProgram Processed 550,000,000 records. Elapsed time: 00:13:36s. Time for last 1,000,000: 1s. Last read position: KI270733.1:131,052 INFO 2026-06-03 20:10:05 SinglePassSamProgram Processed 551,000,000 records. Elapsed time: 00:13:37s. Time for last 1,000,000: 1s. Last read position: KI270733.1:176,051 INFO 2026-06-03 20:10:07 SinglePassSamProgram Processed 552,000,000 records. Elapsed time: 00:13:39s. Time for last 1,000,000: 1s. Last read position: KI270733.1:178,677 INFO 2026-06-03 20:10:07 RExecutor Executing R script via command: Rscript /tmp/script7448186036404584796.R /tmp/nxf.XXXXWmzxIt/aih-tih-sc-242a7d-R1_A23YTGFLT4_1_collectinsertsize.txt /tmp/nxf.XXXXWmzxIt/aih-tih-sc-242a7d-R1_A23YTGFLT4_1_collectinsertsize.pdf aih-tih-sc-242a7d-R1_A23YTGFLT4_1.Aligned.sortedByCoord.out.bam ERROR 2026-06-03 20:10:07 ProcessExecutor /bin/sh: warning: setlocale: LC_ALL: cannot change locale (en_US.UTF-8) ERROR 2026-06-03 20:10:07 ProcessExecutor sh: warning: setlocale: LC_ALL: cannot change locale (en_US.UTF-8) ERROR 2026-06-03 20:10:07 ProcessExecutor sh: warning: setlocale: LC_ALL: cannot change locale (en_US.UTF-8) ERROR 2026-06-03 20:10:07 ProcessExecutor During startup - Warning messages: ERROR 2026-06-03 20:10:07 ProcessExecutor 1: Setting LC_CTYPE failed, using "C" ERROR 2026-06-03 20:10:07 ProcessExecutor 2: Setting LC_COLLATE failed, using "C" ERROR 2026-06-03 20:10:07 ProcessExecutor 3: Setting LC_TIME failed, using "C" ERROR 2026-06-03 20:10:07 ProcessExecutor 4: Setting LC_MESSAGES failed, using "C" ERROR 2026-06-03 20:10:07 ProcessExecutor 5: Setting LC_MONETARY failed, using "C" ERROR 2026-06-03 20:10:07 ProcessExecutor 6: Setting LC_PAPER failed, using "C" ERROR 2026-06-03 20:10:07 ProcessExecutor 7: Setting LC_MEASUREMENT failed, using "C" INFO 2026-06-03 20:10:07 ProcessExecutor null device INFO 2026-06-03 20:10:07 ProcessExecutor 1 ERROR 2026-06-03 20:10:07 ProcessExecutor sh: warning: setlocale: LC_ALL: cannot change locale (en_US.UTF-8) [Wed Jun 03 20:10:07 GMT 2026] picard.analysis.CollectInsertSizeMetrics done. Elapsed time: 13.67 minutes. Runtime.totalMemory()=337641472