Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/stage-e543dae6-5fea-4720-bfb6-150bf1ff20d4/82/1bfcba5045fc10a52ca200a4890a9a/dummy_file_fusioncatcher.txt
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/d6/0dd20404884fda5ce72e9ab823b103/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/d6/0dd20404884fda5ce72e9ab823b103/.command.run
  Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/rna/GRCh38/fusion_report_db
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/10/8ef363ab64a8ffb1e67d17107a5505/aih-tih-sc-67e6e5-R1_A23YTGFLT4_1.starfusion.starfusion.fusion_predictions.filtered_pass_only.tsv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/15/1684dccdecde009f0a20e2ea1a8863/aih-tih-sc-67e6e5-R1_A23YTGFLT4_1.arriba.fusions.filtered_pass_only.tsv
==> STAGING COMPLETE (6 inputs)

Running application...
NF1--RAB11FIP4
starfusion
arriba
TXNL1--AC022031.2
starfusion
arriba
UBE2Q2P1--GOLGA6L10
starfusion
PRPF18--CTIF
starfusion
arriba
TLK2--AC240565.1
starfusion
AC026150.1--GOLGA6L10
starfusion
TVP23C--CDRT4
arriba
PCDHA4--PCDHAC1
arriba
PCDHA4--PCDHAC2
arriba
PCDHA4--PCDHA13
arriba
PCDHA5--PCDHAC1
arriba
PCDHA5--PCDHAC2
arriba
PCDHA5--PCDHA13
arriba
GABPB1--SLC27A2
arriba
TIMM23--PARGP1
arriba
AL669831.1--SEPTIN14
arriba
NELL2--GPHN
arriba
DBX2--GPHN
arriba

  0%|          | 0/18 [00:00<?, ?it/s]
Processing NF1--RAB11FIP4:   0%|          | 0/18 [00:00<?, ?it/s]
Processing NF1--RAB11FIP4:   6%|▌         | 1/18 [00:00<00:01,  8.77it/s]
Processing TXNL1--AC022031.2:   6%|▌         | 1/18 [00:00<00:01,  8.77it/s]
Processing TXNL1--AC022031.2:  11%|█         | 2/18 [00:00<00:01,  9.09it/s]
Processing UBE2Q2P1--GOLGA6L10:  11%|█         | 2/18 [00:00<00:01,  9.09it/s]
Processing UBE2Q2P1--GOLGA6L10:  17%|█▋        | 3/18 [00:00<00:01,  9.19it/s]
Processing PRPF18--CTIF:  17%|█▋        | 3/18 [00:00<00:01,  9.19it/s]       
Processing PRPF18--CTIF:  22%|██▏       | 4/18 [00:00<00:01,  9.23it/s]
Processing TLK2--AC240565.1:  22%|██▏       | 4/18 [00:00<00:01,  9.23it/s]
Processing TLK2--AC240565.1:  28%|██▊       | 5/18 [00:00<00:01,  9.26it/s]
Processing AC026150.1--GOLGA6L10:  28%|██▊       | 5/18 [00:00<00:01,  9.26it/s]
Processing AC026150.1--GOLGA6L10:  33%|███▎      | 6/18 [00:00<00:01,  9.27it/s]
Processing TVP23C--CDRT4:  33%|███▎      | 6/18 [00:00<00:01,  9.27it/s]        
Processing TVP23C--CDRT4:  39%|███▉      | 7/18 [00:00<00:01,  9.29it/s]
Processing PCDHA4--PCDHAC1:  39%|███▉      | 7/18 [00:00<00:01,  9.29it/s]
Processing PCDHA4--PCDHAC1:  44%|████▍     | 8/18 [00:00<00:01,  9.29it/s]
Processing PCDHA4--PCDHAC2:  44%|████▍     | 8/18 [00:00<00:01,  9.29it/s]
Processing PCDHA4--PCDHAC2:  50%|█████     | 9/18 [00:00<00:00,  9.27it/s]
Processing PCDHA4--PCDHA13:  50%|█████     | 9/18 [00:00<00:00,  9.27it/s]
Processing PCDHA4--PCDHA13:  56%|█████▌    | 10/18 [00:01<00:00,  9.27it/s]
Processing PCDHA5--PCDHAC1:  56%|█████▌    | 10/18 [00:01<00:00,  9.27it/s]
Processing PCDHA5--PCDHAC1:  61%|██████    | 11/18 [00:01<00:00,  9.28it/s]
Processing PCDHA5--PCDHAC2:  61%|██████    | 11/18 [00:01<00:00,  9.28it/s]
Processing PCDHA5--PCDHAC2:  67%|██████▋   | 12/18 [00:01<00:00,  9.27it/s]
Processing PCDHA5--PCDHA13:  67%|██████▋   | 12/18 [00:01<00:00,  9.27it/s]
Processing PCDHA5--PCDHA13:  72%|███████▏  | 13/18 [00:01<00:00,  9.28it/s]
Processing GABPB1--SLC27A2:  72%|███████▏  | 13/18 [00:01<00:00,  9.28it/s]
Processing GABPB1--SLC27A2:  78%|███████▊  | 14/18 [00:01<00:00,  9.29it/s]
Processing TIMM23--PARGP1:  78%|███████▊  | 14/18 [00:01<00:00,  9.29it/s] 
Processing TIMM23--PARGP1:  83%|████████▎ | 15/18 [00:01<00:00,  9.30it/s]
Processing AL669831.1--SEPTIN14:  83%|████████▎ | 15/18 [00:01<00:00,  9.30it/s]
Processing AL669831.1--SEPTIN14:  89%|████████▉ | 16/18 [00:01<00:00,  9.31it/s]
Processing NELL2--GPHN:  89%|████████▉ | 16/18 [00:01<00:00,  9.31it/s]         
Processing NELL2--GPHN:  94%|█████████▍| 17/18 [00:01<00:00,  9.30it/s]
Processing DBX2--GPHN:  94%|█████████▍| 17/18 [00:01<00:00,  9.30it/s] 
Processing DBX2--GPHN: 100%|██████████| 18/18 [00:01<00:00,  9.31it/s]
Processing DBX2--GPHN: 100%|██████████| 18/18 [00:01<00:00,  9.27it/s]
cat: fusion_report_db/DB-timestamp.txt: No such file or directory