File Info
- Filename
- aih-tih-sc-67e6e5-R1_A23YTGFLT4_1.fusions.csv
- Full Path
- s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/d6/0dd20404884fda5ce72e9ab823b103/aih-tih-sc-67e6e5-R1_A23YTGFLT4_1.fusions.csv
- Size
- 4.4 KB
- Task
- NFCORE_RNAFUSION:RNAFUSION:FUSIONREPORT_WORKFLOW:FUSIONREPORT (aih-tih-sc-67e6e5-R1_A23YTGFLT4_1)
- Attempt
Content
View in new tab| Fusion | Databases | Score | Explained score | arriba | starfusion |
| NF1--RAB11FIP4 | Mitelman,FusionGDB2 | 0.375 | 0.5 * (0.125 + 0.125) + 0.5 * (0.500 + 0.000) | position: chr17:31265339#chr17:31431813,reading-frame: out-of-frame,type: deletion/read-through,split_reads1: 5,split_reads2: 18,discordant_mates: 0,coverage1: 209,coverage2: 437,confidence: high | position: chr17:31265339:+#chr17:31431813:+,junction_reads: 25,spanning_reads: 0,ffmp: 0.0845 |
| TXNL1--AC022031.2 | 0.125 | 0.5 * (0.125 + 0.125) + 0.5 * () | position: chr18:56638343#chr18:55837831,reading-frame: out-of-frame,type: inversion,split_reads1: 19,split_reads2: 5,discordant_mates: 0,coverage1: 5718,coverage2: 11,confidence: high | position: chr18:56638343:-#chr18:55837831:+,junction_reads: 24,spanning_reads: 0,ffmp: 0.0811 | |
| UBE2Q2P1--GOLGA6L10 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr15:84526781:-#chr15:82347629:-,junction_reads: 13,spanning_reads: 0,ffmp: 0.0406 | ||
| PRPF18--CTIF | 0.125 | 0.5 * (0.125 + 0.125) + 0.5 * () | position: chr10:13616553#chr18:48817221,reading-frame: in-frame,type: translocation,split_reads1: 6,split_reads2: 4,discordant_mates: 0,coverage1: 627,coverage2: 821,confidence: high | position: chr10:13616553:+#chr18:48817221:+,junction_reads: 12,spanning_reads: 0,ffmp: 0.0406 | |
| TLK2--AC240565.1 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr17:62560126:+#chr17:106864:-,junction_reads: 10,spanning_reads: 0,ffmp: 0.0133 | ||
| AC026150.1--GOLGA6L10 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr15:30544660:+#chr15:82347629:-,junction_reads: 8,spanning_reads: 0,ffmp: 0.0023 | ||
| TVP23C--CDRT4 | FusionGDB2 | 0.062 | 0.5 * (0.125) + 0.5 * (0.000) | position: chr17:15503098#chr17:15440285,reading-frame: out-of-frame,type: deletion/read-through,split_reads1: 40,split_reads2: 48,discordant_mates: 1,coverage1: 1033,coverage2: 385,confidence: high | |
| PCDHA4--PCDHAC1 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr5:140809572#chr5:140978949,reading-frame: in-frame,type: deletion/read-through,split_reads1: 23,split_reads2: 23,discordant_mates: 0,coverage1: 976,coverage2: 879,confidence: high | ||
| PCDHA4--PCDHAC2 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr5:140809572#chr5:140978949,reading-frame: in-frame,type: deletion/read-through,split_reads1: 23,split_reads2: 23,discordant_mates: 0,coverage1: 976,coverage2: 879,confidence: high | ||
| PCDHA4--PCDHA13 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr5:140809572#chr5:140978949,reading-frame: in-frame,type: deletion/read-through,split_reads1: 23,split_reads2: 23,discordant_mates: 0,coverage1: 976,coverage2: 879,confidence: high | ||
| PCDHA5--PCDHAC1 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr5:140824127#chr5:140978949,reading-frame: in-frame,type: deletion/read-through,split_reads1: 8,split_reads2: 14,discordant_mates: 0,coverage1: 549,coverage2: 879,confidence: high | ||
| PCDHA5--PCDHAC2 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr5:140824127#chr5:140978949,reading-frame: in-frame,type: deletion/read-through,split_reads1: 8,split_reads2: 14,discordant_mates: 0,coverage1: 549,coverage2: 879,confidence: high | ||
| PCDHA5--PCDHA13 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr5:140824127#chr5:140978949,reading-frame: in-frame,type: deletion/read-through,split_reads1: 8,split_reads2: 14,discordant_mates: 0,coverage1: 549,coverage2: 879,confidence: high | ||
| GABPB1--SLC27A2 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr15:50300789#chr15:50189412,reading-frame: out-of-frame,type: deletion/read-through/5'-5',split_reads1: 17,split_reads2: 3,discordant_mates: 0,coverage1: 278,coverage2: 39,confidence: high | ||
| TIMM23--PARGP1 | FusionGDB2 | 0.062 | 0.5 * (0.125) + 0.5 * (0.000) | position: chr10:45988847#chr10:45863114,reading-frame: out-of-frame,type: inversion,split_reads1: 2,split_reads2: 14,discordant_mates: 1,coverage1: 445,coverage2: 971,confidence: high | |
| AL669831.1--SEPTIN14 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr1:727712#chr7:55796092,reading-frame: .,type: translocation,split_reads1: 5,split_reads2: 11,discordant_mates: 0,coverage1: 186,coverage2: 1876,confidence: high | ||
| NELL2--GPHN | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr12:44951218#chr14:66965193,reading-frame: .,type: translocation,split_reads1: 1,split_reads2: 7,discordant_mates: 0,coverage1: 15,coverage2: 1064,confidence: high | ||
| DBX2--GPHN | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr12:44951218#chr14:66965193,reading-frame: .,type: translocation,split_reads1: 1,split_reads2: 7,discordant_mates: 0,coverage1: 15,coverage2: 1064,confidence: high |
19 rows