File Info

Filename
fi_workdir/Log.final.out
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/1a/1c16b4efa3a5fac22ee623f5cf50b9/fi_workdir/Log.final.out
Size
2.0 KB
Attempt
                                 Started job on |	Jun 03 21:45:44
                             Started mapping on |	Jun 03 21:52:14
                                    Finished on |	Jun 03 22:47:00
       Mapping speed, Million of reads per hour |	325.20

                          Number of input reads |	296831475
                      Average input read length |	252
                                    UNIQUE READS:
                   Uniquely mapped reads number |	283449874
                        Uniquely mapped reads % |	95.49%
                          Average mapped length |	251.97
                       Number of splices: Total |	306937957
            Number of splices: Annotated (sjdb) |	302825071
                       Number of splices: GT/AG |	303148602
                       Number of splices: GC/AG |	2233041
                       Number of splices: AT/AC |	236853
               Number of splices: Non-canonical |	1319461
                      Mismatch rate per base, % |	0.21%
                         Deletion rate per base |	0.02%
                        Deletion average length |	2.09
                        Insertion rate per base |	0.00%
                       Insertion average length |	1.74
                             MULTI-MAPPING READS:
        Number of reads mapped to multiple loci |	10712286
             % of reads mapped to multiple loci |	3.61%
        Number of reads mapped to too many loci |	469832
             % of reads mapped to too many loci |	0.16%
                                  UNMAPPED READS:
  Number of reads unmapped: too many mismatches |	0
       % of reads unmapped: too many mismatches |	0.00%
            Number of reads unmapped: too short |	1946388
                 % of reads unmapped: too short |	0.66%
                Number of reads unmapped: other |	253095
                     % of reads unmapped: other |	0.09%
                                  CHIMERIC READS:
                       Number of chimeric reads |	0
                            % of chimeric reads |	0.00%