File Info

Filename
fi_workdir/Log.final.out
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/85/cb6127c5a24fccbcbf2b139461b5fe/fi_workdir/Log.final.out
Size
2.0 KB
Attempt
                                 Started job on |	Jun 03 21:17:53
                             Started mapping on |	Jun 03 21:24:50
                                    Finished on |	Jun 03 22:37:05
       Mapping speed, Million of reads per hour |	246.42

                          Number of input reads |	296727647
                      Average input read length |	253
                                    UNIQUE READS:
                   Uniquely mapped reads number |	280340699
                        Uniquely mapped reads % |	94.48%
                          Average mapped length |	253.04
                       Number of splices: Total |	312565685
            Number of splices: Annotated (sjdb) |	307888850
                       Number of splices: GT/AG |	309085507
                       Number of splices: GC/AG |	1972847
                       Number of splices: AT/AC |	231862
               Number of splices: Non-canonical |	1275469
                      Mismatch rate per base, % |	0.22%
                         Deletion rate per base |	0.02%
                        Deletion average length |	2.04
                        Insertion rate per base |	0.00%
                       Insertion average length |	1.68
                             MULTI-MAPPING READS:
        Number of reads mapped to multiple loci |	13186437
             % of reads mapped to multiple loci |	4.44%
        Number of reads mapped to too many loci |	569542
             % of reads mapped to too many loci |	0.19%
                                  UNMAPPED READS:
  Number of reads unmapped: too many mismatches |	0
       % of reads unmapped: too many mismatches |	0.00%
            Number of reads unmapped: too short |	2028910
                 % of reads unmapped: too short |	0.68%
                Number of reads unmapped: other |	602059
                     % of reads unmapped: other |	0.20%
                                  CHIMERIC READS:
                       Number of chimeric reads |	0
                            % of chimeric reads |	0.00%