/usr/local/bin/picard: line 5: warning: setlocale: LC_ALL: cannot change locale (en_US.UTF-8): No such file or directory INFO 2026-06-03 19:52:41 RExecutor Executing R script via command: Rscript /tmp/script14223231553465798158.R ERROR 2026-06-03 19:52:41 ProcessExecutor /bin/sh: warning: setlocale: LC_ALL: cannot change locale (en_US.UTF-8) ERROR 2026-06-03 19:52:41 ProcessExecutor sh: warning: setlocale: LC_ALL: cannot change locale (en_US.UTF-8) ERROR 2026-06-03 19:52:41 ProcessExecutor sh: warning: setlocale: LC_ALL: cannot change locale (en_US.UTF-8) ERROR 2026-06-03 19:52:42 ProcessExecutor During startup - Warning messages: ERROR 2026-06-03 19:52:42 ProcessExecutor 1: Setting LC_CTYPE failed, using "C" ERROR 2026-06-03 19:52:42 ProcessExecutor 2: Setting LC_COLLATE failed, using "C" ERROR 2026-06-03 19:52:42 ProcessExecutor 3: Setting LC_TIME failed, using "C" ERROR 2026-06-03 19:52:42 ProcessExecutor 4: Setting LC_MESSAGES failed, using "C" ERROR 2026-06-03 19:52:42 ProcessExecutor 5: Setting LC_MONETARY failed, using "C" ERROR 2026-06-03 19:52:42 ProcessExecutor 6: Setting LC_PAPER failed, using "C" ERROR 2026-06-03 19:52:42 ProcessExecutor 7: Setting LC_MEASUREMENT failed, using "C" INFO 2026-06-03 19:52:42 ProcessExecutor [1] "Checking if R is installed" ERROR 2026-06-03 19:52:42 ProcessExecutor sh: warning: setlocale: LC_ALL: cannot change locale (en_US.UTF-8) Jun 03, 2026 7:52:42 PM com.intel.gkl.NativeLibraryLoader load INFO: Loading libgkl_compression.so from jar:file:/usr/local/share/picard-3.1.0-0/picard.jar!/com/intel/gkl/native/libgkl_compression.so [Wed Jun 03 19:52:42 GMT 2026] CollectInsertSizeMetrics --Histogram_FILE aih-tih-sc-3abdf4-R1_A23YTGFLT4_1_collectinsertsize.pdf --INPUT aih-tih-sc-3abdf4-R1_A23YTGFLT4_1.Aligned.sortedByCoord.out.bam --OUTPUT aih-tih-sc-3abdf4-R1_A23YTGFLT4_1_collectinsertsize.txt --DEVIATIONS 10.0 --MINIMUM_PCT 0.05 --METRIC_ACCUMULATION_LEVEL ALL_READS --INCLUDE_DUPLICATES false --ASSUME_SORTED true --STOP_AFTER 0 --VERBOSITY INFO --QUIET false --VALIDATION_STRINGENCY STRICT --COMPRESSION_LEVEL 5 --MAX_RECORDS_IN_RAM 500000 --CREATE_INDEX false --CREATE_MD5_FILE false --help false --version false --showHidden false --USE_JDK_DEFLATER false --USE_JDK_INFLATER false [Wed Jun 03 19:52:42 GMT 2026] Executing as ?@nf-5ac87ba11d273b092e82388646f00639-b8717-6869z on Linux 6.12.88 amd64; OpenJDK 64-Bit Server VM 20-internal-adhoc..src; Deflater: Intel; Inflater: Intel; Provider GCS is available; Picard version: Version:3.1.0 INFO 2026-06-03 19:52:44 SinglePassSamProgram Processed 1,000,000 records. Elapsed time: 00:00:01s. Time for last 1,000,000: 1s. Last read position: chr1:1,051,635 INFO 2026-06-03 19:52:45 SinglePassSamProgram Processed 2,000,000 records. Elapsed time: 00:00:03s. Time for last 1,000,000: 1s. Last read position: chr1:1,517,383 INFO 2026-06-03 19:52:47 SinglePassSamProgram Processed 3,000,000 records. Elapsed time: 00:00:05s. Time for last 1,000,000: 1s. Last read position: chr1:3,785,111 INFO 2026-06-03 19:52:49 SinglePassSamProgram Processed 4,000,000 records. Elapsed time: 00:00:06s. Time for last 1,000,000: 1s. Last read position: chr1:8,362,688 INFO 2026-06-03 19:52:50 SinglePassSamProgram Processed 5,000,000 records. Elapsed time: 00:00:08s. Time for last 1,000,000: 1s. Last read position: chr1:11,213,435 INFO 2026-06-03 19:52:52 SinglePassSamProgram Processed 6,000,000 records. Elapsed time: 00:00:10s. Time for last 1,000,000: 1s. Last read position: chr1:15,746,871 INFO 2026-06-03 19:52:54 SinglePassSamProgram Processed 7,000,000 records. Elapsed time: 00:00:11s. Time for last 1,000,000: 1s. Last read position: chr1:16,970,644 INFO 2026-06-03 19:52:55 SinglePassSamProgram Processed 8,000,000 records. Elapsed time: 00:00:13s. Time for last 1,000,000: 1s. Last read position: chr1:19,419,659 INFO 2026-06-03 19:52:57 SinglePassSamProgram Processed 9,000,000 records. Elapsed time: 00:00:15s. Time for last 1,000,000: 1s. Last read position: chr1:21,855,319 INFO 2026-06-03 19:52:58 SinglePassSamProgram Processed 10,000,000 records. Elapsed time: 00:00:16s. Time for last 1,000,000: 1s. Last read position: chr1:23,795,978 INFO 2026-06-03 19:53:00 SinglePassSamProgram Processed 11,000,000 records. Elapsed time: 00:00:18s. Time for last 1,000,000: 1s. Last read position: chr1:26,170,104 INFO 2026-06-03 19:53:02 SinglePassSamProgram Processed 12,000,000 records. Elapsed time: 00:00:20s. Time for last 1,000,000: 1s. Last read position: chr1:27,101,804 INFO 2026-06-03 19:53:04 SinglePassSamProgram Processed 13,000,000 records. Elapsed time: 00:00:21s. Time for last 1,000,000: 1s. Last read position: chr1:29,159,461 INFO 2026-06-03 19:53:05 SinglePassSamProgram Processed 14,000,000 records. Elapsed time: 00:00:23s. Time for last 1,000,000: 1s. Last read position: chr1:31,908,907 INFO 2026-06-03 19:53:07 SinglePassSamProgram Processed 15,000,000 records. Elapsed time: 00:00:25s. Time for last 1,000,000: 1s. Last read position: chr1:32,771,175 INFO 2026-06-03 19:53:08 SinglePassSamProgram Processed 16,000,000 records. Elapsed time: 00:00:26s. Time for last 1,000,000: 1s. Last read position: chr1:35,392,221 INFO 2026-06-03 19:53:10 SinglePassSamProgram Processed 17,000,000 records. Elapsed time: 00:00:28s. Time for last 1,000,000: 1s. Last read position: chr1:39,334,707 INFO 2026-06-03 19:53:12 SinglePassSamProgram Processed 18,000,000 records. Elapsed time: 00:00:30s. Time for last 1,000,000: 1s. Last read position: chr1:41,007,369 INFO 2026-06-03 19:53:14 SinglePassSamProgram Processed 19,000,000 records. Elapsed time: 00:00:31s. Time for last 1,000,000: 1s. Last read position: chr1:43,591,272 INFO 2026-06-03 19:53:15 SinglePassSamProgram Processed 20,000,000 records. Elapsed time: 00:00:33s. Time for last 1,000,000: 1s. Last read position: chr1:45,013,186 INFO 2026-06-03 19:53:17 SinglePassSamProgram Processed 21,000,000 records. Elapsed time: 00:00:35s. Time for last 1,000,000: 1s. Last read position: chr1:46,869,352 INFO 2026-06-03 19:53:19 SinglePassSamProgram Processed 22,000,000 records. Elapsed time: 00:00:37s. Time for last 1,000,000: 1s. Last read position: chr1:54,609,374 INFO 2026-06-03 19:53:20 SinglePassSamProgram Processed 23,000,000 records. Elapsed time: 00:00:38s. Time for last 1,000,000: 1s. Last read position: chr1:67,424,917 INFO 2026-06-03 19:53:22 SinglePassSamProgram Processed 24,000,000 records. Elapsed time: 00:00:40s. Time for last 1,000,000: 1s. Last read position: chr1:90,007,460 INFO 2026-06-03 19:53:23 SinglePassSamProgram Processed 25,000,000 records. Elapsed time: 00:00:41s. Time for last 1,000,000: 1s. Last read position: chr1:108,383,431 INFO 2026-06-03 19:53:25 SinglePassSamProgram Processed 26,000,000 records. Elapsed time: 00:00:43s. Time for last 1,000,000: 1s. Last read position: chr1:111,765,759 INFO 2026-06-03 19:53:27 SinglePassSamProgram Processed 27,000,000 records. Elapsed time: 00:00:45s. Time for last 1,000,000: 1s. Last read position: chr1:116,389,437 INFO 2026-06-03 19:53:29 SinglePassSamProgram Processed 28,000,000 records. Elapsed time: 00:00:47s. Time for last 1,000,000: 1s. Last read position: chr1:120,005,547 INFO 2026-06-03 19:53:30 SinglePassSamProgram Processed 29,000,000 records. Elapsed time: 00:00:48s. Time for last 1,000,000: 1s. Last read position: chr1:146,077,621 INFO 2026-06-03 19:53:32 SinglePassSamProgram Processed 30,000,000 records. Elapsed time: 00:00:50s. Time for last 1,000,000: 1s. Last read position: chr1:148,120,576 INFO 2026-06-03 19:53:34 SinglePassSamProgram Processed 31,000,000 records. Elapsed time: 00:00:52s. Time for last 1,000,000: 2s. Last read position: chr1:149,479,068 INFO 2026-06-03 19:53:36 SinglePassSamProgram Processed 32,000,000 records. Elapsed time: 00:00:53s. Time for last 1,000,000: 1s. Last read position: chr1:149,851,303 INFO 2026-06-03 19:53:37 SinglePassSamProgram Processed 33,000,000 records. Elapsed time: 00:00:55s. Time for last 1,000,000: 1s. Last read position: chr1:149,943,981 INFO 2026-06-03 19:53:39 SinglePassSamProgram Processed 34,000,000 records. Elapsed time: 00:00:57s. Time for last 1,000,000: 1s. Last read position: chr1:150,508,237 INFO 2026-06-03 19:53:41 SinglePassSamProgram Processed 35,000,000 records. Elapsed time: 00:00:59s. Time for last 1,000,000: 1s. Last read position: chr1:151,002,243 INFO 2026-06-03 19:53:43 SinglePassSamProgram Processed 36,000,000 records. Elapsed time: 00:01:01s. Time for last 1,000,000: 1s. Last read position: chr1:151,316,384 INFO 2026-06-03 19:53:45 SinglePassSamProgram Processed 37,000,000 records. Elapsed time: 00:01:02s. Time for last 1,000,000: 1s. Last read position: chr1:151,693,610 INFO 2026-06-03 19:53:46 SinglePassSamProgram Processed 38,000,000 records. Elapsed time: 00:01:04s. Time for last 1,000,000: 1s. Last read position: chr1:153,991,587 INFO 2026-06-03 19:53:48 SinglePassSamProgram Processed 39,000,000 records. Elapsed time: 00:01:05s. Time for last 1,000,000: 1s. Last read position: chr1:154,601,241 INFO 2026-06-03 19:53:50 SinglePassSamProgram Processed 40,000,000 records. Elapsed time: 00:01:07s. Time for last 1,000,000: 1s. Last read position: chr1:155,214,379 INFO 2026-06-03 19:53:51 SinglePassSamProgram Processed 41,000,000 records. Elapsed time: 00:01:09s. Time for last 1,000,000: 1s. Last read position: chr1:156,018,281 INFO 2026-06-03 19:53:53 SinglePassSamProgram Processed 42,000,000 records. Elapsed time: 00:01:10s. Time for last 1,000,000: 1s. Last read position: chr1:156,247,508 INFO 2026-06-03 19:53:54 SinglePassSamProgram Processed 43,000,000 records. Elapsed time: 00:01:12s. Time for last 1,000,000: 1s. Last read position: chr1:158,094,741 INFO 2026-06-03 19:53:56 SinglePassSamProgram Processed 44,000,000 records. Elapsed time: 00:01:14s. Time for last 1,000,000: 1s. Last read position: chr1:160,240,036 INFO 2026-06-03 19:53:57 SinglePassSamProgram Processed 45,000,000 records. Elapsed time: 00:01:15s. Time for last 1,000,000: 1s. Last read position: chr1:161,051,400 INFO 2026-06-03 19:53:59 SinglePassSamProgram Processed 46,000,000 records. Elapsed time: 00:01:16s. Time for last 1,000,000: 1s. Last read position: chr1:161,283,698 INFO 2026-06-03 19:54:00 SinglePassSamProgram Processed 47,000,000 records. Elapsed time: 00:01:18s. Time for last 1,000,000: 1s. Last read position: chr1:166,849,962 INFO 2026-06-03 19:54:02 SinglePassSamProgram Processed 48,000,000 records. Elapsed time: 00:01:20s. Time for last 1,000,000: 1s. Last read position: chr1:169,541,201 INFO 2026-06-03 19:54:03 SinglePassSamProgram Processed 49,000,000 records. Elapsed time: 00:01:21s. Time for last 1,000,000: 1s. Last read position: chr1:171,577,572 INFO 2026-06-03 19:54:05 SinglePassSamProgram Processed 50,000,000 records. Elapsed time: 00:01:23s. Time for last 1,000,000: 1s. Last read position: chr1:179,112,319 INFO 2026-06-03 19:54:07 SinglePassSamProgram Processed 51,000,000 records. Elapsed time: 00:01:25s. Time for last 1,000,000: 1s. Last read position: chr1:183,284,739 INFO 2026-06-03 19:54:09 SinglePassSamProgram Processed 52,000,000 records. Elapsed time: 00:01:26s. Time for last 1,000,000: 1s. Last read position: chr1:186,361,622 INFO 2026-06-03 19:54:11 SinglePassSamProgram Processed 53,000,000 records. Elapsed time: 00:01:28s. Time for last 1,000,000: 1s. Last read position: chr1:202,729,843 INFO 2026-06-03 19:54:12 SinglePassSamProgram Processed 54,000,000 records. Elapsed time: 00:01:30s. Time for last 1,000,000: 1s. Last read position: chr1:205,845,292 INFO 2026-06-03 19:54:14 SinglePassSamProgram Processed 55,000,000 records. Elapsed time: 00:01:32s. Time for last 1,000,000: 1s. Last read position: chr1:219,969,078 INFO 2026-06-03 19:54:16 SinglePassSamProgram Processed 56,000,000 records. Elapsed time: 00:01:34s. Time for last 1,000,000: 1s. Last read position: chr1:226,065,750 INFO 2026-06-03 19:54:18 SinglePassSamProgram Processed 57,000,000 records. Elapsed time: 00:01:35s. Time for last 1,000,000: 1s. Last read position: chr1:229,594,942 INFO 2026-06-03 19:54:19 SinglePassSamProgram Processed 58,000,000 records. Elapsed time: 00:01:37s. Time for last 1,000,000: 1s. Last read position: chr1:244,409,587 INFO 2026-06-03 19:54:21 SinglePassSamProgram Processed 59,000,000 records. Elapsed time: 00:01:39s. Time for last 1,000,000: 1s. Last read position: chr2:3,498,922 INFO 2026-06-03 19:54:23 SinglePassSamProgram Processed 60,000,000 records. Elapsed time: 00:01:41s. Time for last 1,000,000: 1s. Last read position: chr2:15,218,899 INFO 2026-06-03 19:54:25 SinglePassSamProgram Processed 61,000,000 records. Elapsed time: 00:01:42s. Time for last 1,000,000: 1s. Last read position: chr2:20,204,041 INFO 2026-06-03 19:54:27 SinglePassSamProgram Processed 62,000,000 records. Elapsed time: 00:01:44s. Time for last 1,000,000: 1s. Last read position: chr2:24,710,967 INFO 2026-06-03 19:54:29 SinglePassSamProgram Processed 63,000,000 records. Elapsed time: 00:01:46s. Time for last 1,000,000: 1s. Last read position: chr2:27,217,460 INFO 2026-06-03 19:54:30 SinglePassSamProgram Processed 64,000,000 records. Elapsed time: 00:01:48s. Time for last 1,000,000: 1s. Last read position: chr2:28,776,868 INFO 2026-06-03 19:54:31 SinglePassSamProgram Processed 65,000,000 records. Elapsed time: 00:01:49s. Time for last 1,000,000: 1s. Last read position: chr2:32,916,263 INFO 2026-06-03 19:54:33 SinglePassSamProgram Processed 66,000,000 records. Elapsed time: 00:01:51s. Time for last 1,000,000: 2s. Last read position: chr2:32,916,402 INFO 2026-06-03 19:54:35 SinglePassSamProgram Processed 67,000,000 records. Elapsed time: 00:01:53s. Time for last 1,000,000: 1s. Last read position: chr2:32,916,446 INFO 2026-06-03 19:54:36 SinglePassSamProgram Processed 68,000,000 records. Elapsed time: 00:01:54s. Time for last 1,000,000: 1s. Last read position: chr2:42,245,570 INFO 2026-06-03 19:54:38 SinglePassSamProgram Processed 69,000,000 records. Elapsed time: 00:01:56s. Time for last 1,000,000: 1s. Last read position: chr2:45,976,520 INFO 2026-06-03 19:54:40 SinglePassSamProgram Processed 70,000,000 records. Elapsed time: 00:01:57s. Time for last 1,000,000: 1s. Last read position: chr2:54,649,132 INFO 2026-06-03 19:54:41 SinglePassSamProgram Processed 71,000,000 records. Elapsed time: 00:01:59s. Time for last 1,000,000: 1s. Last read position: chr2:61,348,471 INFO 2026-06-03 19:54:42 SinglePassSamProgram Processed 72,000,000 records. Elapsed time: 00:02:00s. Time for last 1,000,000: 1s. Last read position: chr2:69,350,129 INFO 2026-06-03 19:54:44 SinglePassSamProgram Processed 73,000,000 records. Elapsed time: 00:02:01s. Time for last 1,000,000: 1s. Last read position: chr2:71,077,626 INFO 2026-06-03 19:54:45 SinglePassSamProgram Processed 74,000,000 records. Elapsed time: 00:02:03s. Time for last 1,000,000: 1s. Last read position: chr2:74,047,130 INFO 2026-06-03 19:54:47 SinglePassSamProgram Processed 75,000,000 records. Elapsed time: 00:02:04s. Time for last 1,000,000: 1s. Last read position: chr2:74,475,290 INFO 2026-06-03 19:54:48 SinglePassSamProgram Processed 76,000,000 records. Elapsed time: 00:02:06s. Time for last 1,000,000: 1s. Last read position: chr2:85,611,565 INFO 2026-06-03 19:54:50 SinglePassSamProgram Processed 77,000,000 records. Elapsed time: 00:02:08s. Time for last 1,000,000: 1s. Last read position: chr2:95,958,591 INFO 2026-06-03 19:54:52 SinglePassSamProgram Processed 78,000,000 records. Elapsed time: 00:02:10s. Time for last 1,000,000: 1s. Last read position: chr2:98,555,656 INFO 2026-06-03 19:54:54 SinglePassSamProgram Processed 79,000,000 records. Elapsed time: 00:02:12s. Time for last 1,000,000: 2s. Last read position: chr2:106,423,460 INFO 2026-06-03 19:54:55 SinglePassSamProgram Processed 80,000,000 records. Elapsed time: 00:02:13s. Time for last 1,000,000: 1s. Last read position: chr2:110,798,658 INFO 2026-06-03 19:54:57 SinglePassSamProgram Processed 81,000,000 records. Elapsed time: 00:02:15s. Time for last 1,000,000: 1s. Last read position: chr2:119,368,296 INFO 2026-06-03 19:54:59 SinglePassSamProgram Processed 82,000,000 records. Elapsed time: 00:02:16s. Time for last 1,000,000: 1s. Last read position: chr2:131,520,133 INFO 2026-06-03 19:55:00 SinglePassSamProgram Processed 83,000,000 records. Elapsed time: 00:02:18s. Time for last 1,000,000: 1s. Last read position: chr2:159,747,851 INFO 2026-06-03 19:55:02 SinglePassSamProgram Processed 84,000,000 records. Elapsed time: 00:02:19s. Time for last 1,000,000: 1s. Last read position: chr2:177,232,392 INFO 2026-06-03 19:55:03 SinglePassSamProgram Processed 85,000,000 records. Elapsed time: 00:02:21s. Time for last 1,000,000: 1s. Last read position: chr2:197,420,539 INFO 2026-06-03 19:55:04 SinglePassSamProgram Processed 86,000,000 records. Elapsed time: 00:02:22s. Time for last 1,000,000: 1s. Last read position: chr2:207,768,561 INFO 2026-06-03 19:55:05 SinglePassSamProgram Processed 87,000,000 records. Elapsed time: 00:02:23s. Time for last 1,000,000: 1s. Last read position: chr2:216,694,661 INFO 2026-06-03 19:55:07 SinglePassSamProgram Processed 88,000,000 records. Elapsed time: 00:02:25s. Time for last 1,000,000: 1s. Last read position: chr2:222,521,802 INFO 2026-06-03 19:55:08 SinglePassSamProgram Processed 89,000,000 records. Elapsed time: 00:02:26s. Time for last 1,000,000: 1s. Last read position: chr2:233,468,543 INFO 2026-06-03 19:55:10 SinglePassSamProgram Processed 90,000,000 records. Elapsed time: 00:02:28s. Time for last 1,000,000: 2s. Last read position: chr2:241,229,554 INFO 2026-06-03 19:55:12 SinglePassSamProgram Processed 91,000,000 records. Elapsed time: 00:02:30s. Time for last 1,000,000: 1s. Last read position: chr3:9,743,829 INFO 2026-06-03 19:55:14 SinglePassSamProgram Processed 92,000,000 records. Elapsed time: 00:02:31s. Time for last 1,000,000: 1s. Last read position: chr3:12,416,807 INFO 2026-06-03 19:55:16 SinglePassSamProgram Processed 93,000,000 records. Elapsed time: 00:02:33s. Time for last 1,000,000: 1s. Last read position: chr3:15,023,311 INFO 2026-06-03 19:55:18 SinglePassSamProgram Processed 94,000,000 records. Elapsed time: 00:02:35s. Time for last 1,000,000: 2s. Last read position: chr3:25,615,562 INFO 2026-06-03 19:55:19 SinglePassSamProgram Processed 95,000,000 records. Elapsed time: 00:02:37s. Time for last 1,000,000: 1s. Last read position: chr3:32,570,885 INFO 2026-06-03 19:55:20 SinglePassSamProgram Processed 96,000,000 records. Elapsed time: 00:02:38s. Time for last 1,000,000: 1s. Last read position: chr3:38,140,509 INFO 2026-06-03 19:55:21 SinglePassSamProgram Processed 97,000,000 records. Elapsed time: 00:02:39s. Time for last 1,000,000: 1s. Last read position: chr3:42,160,453 INFO 2026-06-03 19:55:23 SinglePassSamProgram Processed 98,000,000 records. Elapsed time: 00:02:41s. Time for last 1,000,000: 1s. Last read position: chr3:44,642,933 INFO 2026-06-03 19:55:25 SinglePassSamProgram Processed 99,000,000 records. Elapsed time: 00:02:43s. Time for last 1,000,000: 1s. Last read position: chr3:47,004,130 INFO 2026-06-03 19:55:27 SinglePassSamProgram Processed 100,000,000 records. Elapsed time: 00:02:44s. Time for last 1,000,000: 1s. Last read position: chr3:47,818,054 INFO 2026-06-03 19:55:28 SinglePassSamProgram Processed 101,000,000 records. Elapsed time: 00:02:46s. Time for last 1,000,000: 1s. Last read position: chr3:48,501,217 INFO 2026-06-03 19:55:29 SinglePassSamProgram Processed 102,000,000 records. Elapsed time: 00:02:47s. Time for last 1,000,000: 1s. Last read position: chr3:49,015,044 INFO 2026-06-03 19:55:31 SinglePassSamProgram Processed 103,000,000 records. Elapsed time: 00:02:49s. Time for last 1,000,000: 1s. Last read position: chr3:49,804,324 INFO 2026-06-03 19:55:33 SinglePassSamProgram Processed 104,000,000 records. Elapsed time: 00:02:51s. Time for last 1,000,000: 1s. Last read position: chr3:51,937,678 INFO 2026-06-03 19:55:35 SinglePassSamProgram Processed 105,000,000 records. Elapsed time: 00:02:52s. Time for last 1,000,000: 1s. Last read position: chr3:52,706,156 INFO 2026-06-03 19:55:36 SinglePassSamProgram Processed 106,000,000 records. Elapsed time: 00:02:54s. Time for last 1,000,000: 1s. Last read position: chr3:58,168,621 INFO 2026-06-03 19:55:38 SinglePassSamProgram Processed 107,000,000 records. Elapsed time: 00:02:55s. Time for last 1,000,000: 1s. Last read position: chr3:98,593,067 INFO 2026-06-03 19:55:39 SinglePassSamProgram Processed 108,000,000 records. Elapsed time: 00:02:57s. Time for last 1,000,000: 1s. Last read position: chr3:113,885,907 INFO 2026-06-03 19:55:41 SinglePassSamProgram Processed 109,000,000 records. Elapsed time: 00:02:59s. Time for last 1,000,000: 1s. Last read position: chr3:123,618,652 INFO 2026-06-03 19:55:42 SinglePassSamProgram Processed 110,000,000 records. Elapsed time: 00:03:00s. Time for last 1,000,000: 1s. Last read position: chr3:127,605,122 INFO 2026-06-03 19:55:44 SinglePassSamProgram Processed 111,000,000 records. Elapsed time: 00:03:01s. Time for last 1,000,000: 1s. Last read position: chr3:129,437,071 INFO 2026-06-03 19:55:45 SinglePassSamProgram Processed 112,000,000 records. Elapsed time: 00:03:03s. Time for last 1,000,000: 1s. Last read position: chr3:139,358,229 INFO 2026-06-03 19:55:47 SinglePassSamProgram Processed 113,000,000 records. Elapsed time: 00:03:04s. Time for last 1,000,000: 1s. Last read position: chr3:150,546,093 INFO 2026-06-03 19:55:48 SinglePassSamProgram Processed 114,000,000 records. Elapsed time: 00:03:06s. Time for last 1,000,000: 1s. Last read position: chr3:169,483,691 INFO 2026-06-03 19:55:50 SinglePassSamProgram Processed 115,000,000 records. Elapsed time: 00:03:08s. Time for last 1,000,000: 1s. Last read position: chr3:183,064,598 INFO 2026-06-03 19:55:52 SinglePassSamProgram Processed 116,000,000 records. Elapsed time: 00:03:10s. Time for last 1,000,000: 1s. Last read position: chr3:184,321,984 INFO 2026-06-03 19:55:54 SinglePassSamProgram Processed 117,000,000 records. Elapsed time: 00:03:12s. Time for last 1,000,000: 1s. Last read position: chr3:188,760,240 INFO 2026-06-03 19:55:56 SinglePassSamProgram Processed 118,000,000 records. Elapsed time: 00:03:13s. Time for last 1,000,000: 1s. Last read position: chr3:195,864,138 INFO 2026-06-03 19:55:58 SinglePassSamProgram Processed 119,000,000 records. Elapsed time: 00:03:15s. Time for last 1,000,000: 1s. Last read position: chr4:444,313 INFO 2026-06-03 19:55:59 SinglePassSamProgram Processed 120,000,000 records. Elapsed time: 00:03:17s. Time for last 1,000,000: 1s. Last read position: chr4:1,728,489 INFO 2026-06-03 19:56:00 SinglePassSamProgram Processed 121,000,000 records. Elapsed time: 00:03:18s. Time for last 1,000,000: 1s. Last read position: chr4:2,693,612 INFO 2026-06-03 19:56:02 SinglePassSamProgram Processed 122,000,000 records. Elapsed time: 00:03:19s. Time for last 1,000,000: 1s. Last read position: chr4:6,716,712 INFO 2026-06-03 19:56:03 SinglePassSamProgram Processed 123,000,000 records. Elapsed time: 00:03:21s. Time for last 1,000,000: 1s. Last read position: chr4:13,600,159 INFO 2026-06-03 19:56:05 SinglePassSamProgram Processed 124,000,000 records. Elapsed time: 00:03:22s. Time for last 1,000,000: 1s. Last read position: chr4:39,218,080 INFO 2026-06-03 19:56:06 SinglePassSamProgram Processed 125,000,000 records. Elapsed time: 00:03:24s. Time for last 1,000,000: 1s. Last read position: chr4:54,263,830 INFO 2026-06-03 19:56:08 SinglePassSamProgram Processed 126,000,000 records. Elapsed time: 00:03:25s. Time for last 1,000,000: 1s. Last read position: chr4:73,091,475 INFO 2026-06-03 19:56:09 SinglePassSamProgram Processed 127,000,000 records. Elapsed time: 00:03:27s. Time for last 1,000,000: 1s. Last read position: chr4:82,428,152 INFO 2026-06-03 19:56:11 SinglePassSamProgram Processed 128,000,000 records. Elapsed time: 00:03:28s. Time for last 1,000,000: 1s. Last read position: chr4:87,134,474 INFO 2026-06-03 19:56:12 SinglePassSamProgram Processed 129,000,000 records. Elapsed time: 00:03:30s. Time for last 1,000,000: 1s. Last read position: chr4:106,324,991 INFO 2026-06-03 19:56:13 SinglePassSamProgram Processed 130,000,000 records. Elapsed time: 00:03:31s. Time for last 1,000,000: 1s. Last read position: chr4:128,287,678 INFO 2026-06-03 19:56:14 SinglePassSamProgram Processed 131,000,000 records. Elapsed time: 00:03:32s. Time for last 1,000,000: 1s. Last read position: chr4:150,256,087 INFO 2026-06-03 19:56:15 SinglePassSamProgram Processed 132,000,000 records. Elapsed time: 00:03:33s. Time for last 1,000,000: 1s. Last read position: chr4:174,262,950 INFO 2026-06-03 19:56:17 SinglePassSamProgram Processed 133,000,000 records. Elapsed time: 00:03:35s. Time for last 1,000,000: 1s. Last read position: chr5:453,788 INFO 2026-06-03 19:56:19 SinglePassSamProgram Processed 134,000,000 records. Elapsed time: 00:03:36s. Time for last 1,000,000: 1s. Last read position: chr5:10,407,127 INFO 2026-06-03 19:56:20 SinglePassSamProgram Processed 135,000,000 records. Elapsed time: 00:03:38s. Time for last 1,000,000: 1s. Last read position: chr5:32,048,576 INFO 2026-06-03 19:56:22 SinglePassSamProgram Processed 136,000,000 records. Elapsed time: 00:03:39s. Time for last 1,000,000: 1s. Last read position: chr5:43,535,622 INFO 2026-06-03 19:56:23 SinglePassSamProgram Processed 137,000,000 records. Elapsed time: 00:03:41s. Time for last 1,000,000: 1s. Last read position: chr5:67,166,421 INFO 2026-06-03 19:56:24 SinglePassSamProgram Processed 138,000,000 records. Elapsed time: 00:03:42s. Time for last 1,000,000: 1s. Last read position: chr5:78,015,500 INFO 2026-06-03 19:56:25 SinglePassSamProgram Processed 139,000,000 records. Elapsed time: 00:03:43s. Time for last 1,000,000: 1s. Last read position: chr5:96,767,452 INFO 2026-06-03 19:56:27 SinglePassSamProgram Processed 140,000,000 records. Elapsed time: 00:03:44s. Time for last 1,000,000: 1s. Last read position: chr5:128,392,069 INFO 2026-06-03 19:56:28 SinglePassSamProgram Processed 141,000,000 records. Elapsed time: 00:03:46s. Time for last 1,000,000: 1s. Last read position: chr5:135,571,285 INFO 2026-06-03 19:56:29 SinglePassSamProgram Processed 142,000,000 records. Elapsed time: 00:03:47s. Time for last 1,000,000: 1s. Last read position: chr5:140,632,864 INFO 2026-06-03 19:56:31 SinglePassSamProgram Processed 143,000,000 records. Elapsed time: 00:03:49s. Time for last 1,000,000: 1s. Last read position: chr5:141,863,559 INFO 2026-06-03 19:56:33 SinglePassSamProgram Processed 144,000,000 records. Elapsed time: 00:03:50s. Time for last 1,000,000: 1s. Last read position: chr5:150,375,403 INFO 2026-06-03 19:56:34 SinglePassSamProgram Processed 145,000,000 records. Elapsed time: 00:03:52s. Time for last 1,000,000: 1s. Last read position: chr5:157,743,954 INFO 2026-06-03 19:56:35 SinglePassSamProgram Processed 146,000,000 records. Elapsed time: 00:03:53s. Time for last 1,000,000: 1s. Last read position: chr5:175,492,246 INFO 2026-06-03 19:56:36 SinglePassSamProgram Processed 147,000,000 records. Elapsed time: 00:03:54s. Time for last 1,000,000: 1s. Last read position: chr5:178,712,647 INFO 2026-06-03 19:56:38 SinglePassSamProgram Processed 148,000,000 records. Elapsed time: 00:03:56s. Time for last 1,000,000: 1s. Last read position: chr5:179,865,281 INFO 2026-06-03 19:56:40 SinglePassSamProgram Processed 149,000,000 records. Elapsed time: 00:03:58s. Time for last 1,000,000: 1s. Last read position: chr6:2,766,114 INFO 2026-06-03 19:56:41 SinglePassSamProgram Processed 150,000,000 records. Elapsed time: 00:03:59s. Time for last 1,000,000: 1s. Last read position: chr6:10,723,221 INFO 2026-06-03 19:56:43 SinglePassSamProgram Processed 151,000,000 records. Elapsed time: 00:04:01s. Time for last 1,000,000: 1s. Last read position: chr6:20,490,221 INFO 2026-06-03 19:56:44 SinglePassSamProgram Processed 152,000,000 records. Elapsed time: 00:04:02s. Time for last 1,000,000: 1s. Last read position: chr6:26,183,930 INFO 2026-06-03 19:56:46 SinglePassSamProgram Processed 153,000,000 records. Elapsed time: 00:04:04s. Time for last 1,000,000: 1s. Last read position: chr6:29,888,675 INFO 2026-06-03 19:56:47 SinglePassSamProgram Processed 154,000,000 records. Elapsed time: 00:04:05s. Time for last 1,000,000: 1s. Last read position: chr6:30,892,385 INFO 2026-06-03 19:56:48 SinglePassSamProgram Processed 155,000,000 records. Elapsed time: 00:04:06s. Time for last 1,000,000: 1s. Last read position: chr6:31,623,831 INFO 2026-06-03 19:56:50 SinglePassSamProgram Processed 156,000,000 records. Elapsed time: 00:04:08s. Time for last 1,000,000: 1s. Last read position: chr6:31,816,230 INFO 2026-06-03 19:56:51 SinglePassSamProgram Processed 157,000,000 records. Elapsed time: 00:04:09s. Time for last 1,000,000: 1s. Last read position: chr6:32,119,088 INFO 2026-06-03 19:56:53 SinglePassSamProgram Processed 158,000,000 records. Elapsed time: 00:04:11s. Time for last 1,000,000: 1s. Last read position: chr6:33,304,439 INFO 2026-06-03 19:56:55 SinglePassSamProgram Processed 159,000,000 records. Elapsed time: 00:04:13s. Time for last 1,000,000: 1s. Last read position: chr6:35,086,972 INFO 2026-06-03 19:56:56 SinglePassSamProgram Processed 160,000,000 records. Elapsed time: 00:04:14s. Time for last 1,000,000: 1s. Last read position: chr6:41,771,298 INFO 2026-06-03 19:56:58 SinglePassSamProgram Processed 161,000,000 records. Elapsed time: 00:04:16s. Time for last 1,000,000: 1s. Last read position: chr6:43,432,628 INFO 2026-06-03 19:57:00 SinglePassSamProgram Processed 162,000,000 records. Elapsed time: 00:04:18s. Time for last 1,000,000: 2s. Last read position: chr6:47,234,770 INFO 2026-06-03 19:57:02 SinglePassSamProgram Processed 163,000,000 records. Elapsed time: 00:04:20s. Time for last 1,000,000: 2s. Last read position: chr6:56,459,039 INFO 2026-06-03 19:57:04 SinglePassSamProgram Processed 164,000,000 records. Elapsed time: 00:04:22s. Time for last 1,000,000: 2s. Last read position: chr6:79,017,465 INFO 2026-06-03 19:57:06 SinglePassSamProgram Processed 165,000,000 records. Elapsed time: 00:04:24s. Time for last 1,000,000: 1s. Last read position: chr6:99,408,230 INFO 2026-06-03 19:57:08 SinglePassSamProgram Processed 166,000,000 records. Elapsed time: 00:04:26s. Time for last 1,000,000: 1s. Last read position: chr6:111,259,663 INFO 2026-06-03 19:57:10 SinglePassSamProgram Processed 167,000,000 records. Elapsed time: 00:04:28s. Time for last 1,000,000: 1s. Last read position: chr6:125,220,150 INFO 2026-06-03 19:57:12 SinglePassSamProgram Processed 168,000,000 records. Elapsed time: 00:04:29s. Time for last 1,000,000: 1s. Last read position: chr6:138,334,618 INFO 2026-06-03 19:57:13 SinglePassSamProgram Processed 169,000,000 records. Elapsed time: 00:04:31s. Time for last 1,000,000: 1s. Last read position: chr6:149,378,954 INFO 2026-06-03 19:57:15 SinglePassSamProgram Processed 170,000,000 records. Elapsed time: 00:04:33s. Time for last 1,000,000: 1s. Last read position: chr6:156,829,266 INFO 2026-06-03 19:57:17 SinglePassSamProgram Processed 171,000,000 records. Elapsed time: 00:04:34s. Time for last 1,000,000: 1s. Last read position: chr6:158,787,097 INFO 2026-06-03 19:57:18 SinglePassSamProgram Processed 172,000,000 records. Elapsed time: 00:04:36s. Time for last 1,000,000: 1s. Last read position: chr6:170,535,346 INFO 2026-06-03 19:57:20 SinglePassSamProgram Processed 173,000,000 records. Elapsed time: 00:04:38s. Time for last 1,000,000: 1s. Last read position: chr7:2,647,477 INFO 2026-06-03 19:57:22 SinglePassSamProgram Processed 174,000,000 records. Elapsed time: 00:04:40s. Time for last 1,000,000: 1s. Last read position: chr7:5,394,487 INFO 2026-06-03 19:57:24 SinglePassSamProgram Processed 175,000,000 records. Elapsed time: 00:04:41s. Time for last 1,000,000: 1s. Last read position: chr7:6,652,486 INFO 2026-06-03 19:57:26 SinglePassSamProgram Processed 176,000,000 records. Elapsed time: 00:04:43s. Time for last 1,000,000: 2s. Last read position: chr7:23,507,460 INFO 2026-06-03 19:57:28 SinglePassSamProgram Processed 177,000,000 records. Elapsed time: 00:04:45s. Time for last 1,000,000: 1s. Last read position: chr7:39,013,547 INFO 2026-06-03 19:57:29 SinglePassSamProgram Processed 178,000,000 records. Elapsed time: 00:04:47s. Time for last 1,000,000: 1s. Last read position: chr7:44,799,798 INFO 2026-06-03 19:57:31 SinglePassSamProgram Processed 179,000,000 records. Elapsed time: 00:04:49s. Time for last 1,000,000: 1s. Last read position: chr7:55,165,286 INFO 2026-06-03 19:57:33 SinglePassSamProgram Processed 180,000,000 records. Elapsed time: 00:04:51s. Time for last 1,000,000: 1s. Last read position: chr7:72,868,862 INFO 2026-06-03 19:57:34 SinglePassSamProgram Processed 181,000,000 records. Elapsed time: 00:04:52s. Time for last 1,000,000: 1s. Last read position: chr7:73,508,362 INFO 2026-06-03 19:57:36 SinglePassSamProgram Processed 182,000,000 records. Elapsed time: 00:04:54s. Time for last 1,000,000: 1s. Last read position: chr7:75,108,988 INFO 2026-06-03 19:57:38 SinglePassSamProgram Processed 183,000,000 records. Elapsed time: 00:04:56s. Time for last 1,000,000: 1s. Last read position: chr7:76,057,466 INFO 2026-06-03 19:57:40 SinglePassSamProgram Processed 184,000,000 records. Elapsed time: 00:04:57s. Time for last 1,000,000: 1s. Last read position: chr7:76,990,270 INFO 2026-06-03 19:57:41 SinglePassSamProgram Processed 185,000,000 records. Elapsed time: 00:04:59s. Time for last 1,000,000: 1s. Last read position: chr7:92,062,400 INFO 2026-06-03 19:57:43 SinglePassSamProgram Processed 186,000,000 records. Elapsed time: 00:05:01s. Time for last 1,000,000: 1s. Last read position: chr7:98,961,329 INFO 2026-06-03 19:57:45 SinglePassSamProgram Processed 187,000,000 records. Elapsed time: 00:05:03s. Time for last 1,000,000: 1s. Last read position: chr7:100,156,910 INFO 2026-06-03 19:57:46 SinglePassSamProgram Processed 188,000,000 records. Elapsed time: 00:05:04s. Time for last 1,000,000: 1s. Last read position: chr7:100,805,574 INFO 2026-06-03 19:57:48 SinglePassSamProgram Processed 189,000,000 records. Elapsed time: 00:05:06s. Time for last 1,000,000: 1s. Last read position: chr7:102,433,648 INFO 2026-06-03 19:57:50 SinglePassSamProgram Processed 190,000,000 records. Elapsed time: 00:05:08s. Time for last 1,000,000: 1s. Last read position: chr7:102,659,978 INFO 2026-06-03 19:57:52 SinglePassSamProgram Processed 191,000,000 records. Elapsed time: 00:05:10s. Time for last 1,000,000: 1s. Last read position: chr7:116,783,435 INFO 2026-06-03 19:57:54 SinglePassSamProgram Processed 192,000,000 records. Elapsed time: 00:05:12s. Time for last 1,000,000: 1s. Last read position: chr7:128,769,066 INFO 2026-06-03 19:57:55 SinglePassSamProgram Processed 193,000,000 records. Elapsed time: 00:05:13s. Time for last 1,000,000: 1s. Last read position: chr7:137,251,251 INFO 2026-06-03 19:57:57 SinglePassSamProgram Processed 194,000,000 records. Elapsed time: 00:05:15s. Time for last 1,000,000: 1s. Last read position: chr7:138,861,242 INFO 2026-06-03 19:57:59 SinglePassSamProgram Processed 195,000,000 records. Elapsed time: 00:05:17s. Time for last 1,000,000: 1s. Last read position: chr7:141,074,447 INFO 2026-06-03 19:58:01 SinglePassSamProgram Processed 196,000,000 records. Elapsed time: 00:05:18s. Time for last 1,000,000: 1s. Last read position: chr7:144,362,973 INFO 2026-06-03 19:58:02 SinglePassSamProgram Processed 197,000,000 records. Elapsed time: 00:05:20s. Time for last 1,000,000: 1s. Last read position: chr7:150,372,618 INFO 2026-06-03 19:58:04 SinglePassSamProgram Processed 198,000,000 records. Elapsed time: 00:05:22s. Time for last 1,000,000: 1s. Last read position: chr7:152,182,047 INFO 2026-06-03 19:58:06 SinglePassSamProgram Processed 199,000,000 records. Elapsed time: 00:05:24s. Time for last 1,000,000: 1s. Last read position: chr8:8,702,749 INFO 2026-06-03 19:58:07 SinglePassSamProgram Processed 200,000,000 records. Elapsed time: 00:05:25s. Time for last 1,000,000: 1s. Last read position: chr8:18,872,322 INFO 2026-06-03 19:58:09 SinglePassSamProgram Processed 201,000,000 records. Elapsed time: 00:05:27s. Time for last 1,000,000: 1s. Last read position: chr8:23,368,271 INFO 2026-06-03 19:58:11 SinglePassSamProgram Processed 202,000,000 records. Elapsed time: 00:05:29s. Time for last 1,000,000: 1s. Last read position: chr8:32,742,668 INFO 2026-06-03 19:58:13 SinglePassSamProgram Processed 203,000,000 records. Elapsed time: 00:05:31s. Time for last 1,000,000: 1s. Last read position: chr8:38,105,606 INFO 2026-06-03 19:58:14 SinglePassSamProgram Processed 204,000,000 records. Elapsed time: 00:05:32s. Time for last 1,000,000: 1s. Last read position: chr8:38,348,063 INFO 2026-06-03 19:58:16 SinglePassSamProgram Processed 205,000,000 records. Elapsed time: 00:05:34s. Time for last 1,000,000: 1s. Last read position: chr8:38,820,597 INFO 2026-06-03 19:58:18 SinglePassSamProgram Processed 206,000,000 records. Elapsed time: 00:05:35s. Time for last 1,000,000: 1s. Last read position: chr8:41,933,144 INFO 2026-06-03 19:58:19 SinglePassSamProgram Processed 207,000,000 records. Elapsed time: 00:05:37s. Time for last 1,000,000: 1s. Last read position: chr8:48,043,107 INFO 2026-06-03 19:58:21 SinglePassSamProgram Processed 208,000,000 records. Elapsed time: 00:05:39s. Time for last 1,000,000: 1s. Last read position: chr8:67,257,756 INFO 2026-06-03 19:58:23 SinglePassSamProgram Processed 209,000,000 records. Elapsed time: 00:05:41s. Time for last 1,000,000: 1s. Last read position: chr8:85,397,300 INFO 2026-06-03 19:58:25 SinglePassSamProgram Processed 210,000,000 records. Elapsed time: 00:05:43s. Time for last 1,000,000: 2s. Last read position: chr8:99,875,561 INFO 2026-06-03 19:58:26 SinglePassSamProgram Processed 211,000,000 records. Elapsed time: 00:05:44s. Time for last 1,000,000: 1s. Last read position: chr8:100,721,420 INFO 2026-06-03 19:58:28 SinglePassSamProgram Processed 212,000,000 records. Elapsed time: 00:05:46s. Time for last 1,000,000: 1s. Last read position: chr8:119,791,386 INFO 2026-06-03 19:58:30 SinglePassSamProgram Processed 213,000,000 records. Elapsed time: 00:05:48s. Time for last 1,000,000: 1s. Last read position: chr8:135,548,828 INFO 2026-06-03 19:58:32 SinglePassSamProgram Processed 214,000,000 records. Elapsed time: 00:05:49s. Time for last 1,000,000: 1s. Last read position: chr8:143,559,822 INFO 2026-06-03 19:58:33 SinglePassSamProgram Processed 215,000,000 records. Elapsed time: 00:05:51s. Time for last 1,000,000: 1s. Last read position: chr8:143,808,778 INFO 2026-06-03 19:58:34 SinglePassSamProgram Processed 216,000,000 records. Elapsed time: 00:05:52s. Time for last 1,000,000: 1s. Last read position: chr8:143,859,718 INFO 2026-06-03 19:58:36 SinglePassSamProgram Processed 217,000,000 records. Elapsed time: 00:05:53s. Time for last 1,000,000: 1s. Last read position: chr8:143,861,487 INFO 2026-06-03 19:58:37 SinglePassSamProgram Processed 218,000,000 records. Elapsed time: 00:05:54s. Time for last 1,000,000: 1s. Last read position: chr8:143,863,117 INFO 2026-06-03 19:58:38 SinglePassSamProgram Processed 219,000,000 records. Elapsed time: 00:05:56s. Time for last 1,000,000: 1s. Last read position: chr8:143,864,828 INFO 2026-06-03 19:58:40 SinglePassSamProgram Processed 220,000,000 records. Elapsed time: 00:05:57s. Time for last 1,000,000: 1s. Last read position: chr8:143,867,154 INFO 2026-06-03 19:58:41 SinglePassSamProgram Processed 221,000,000 records. Elapsed time: 00:05:59s. Time for last 1,000,000: 1s. Last read position: chr8:143,927,563 INFO 2026-06-03 19:58:42 SinglePassSamProgram Processed 222,000,000 records. Elapsed time: 00:06:00s. Time for last 1,000,000: 1s. Last read position: chr8:144,317,274 INFO 2026-06-03 19:58:44 SinglePassSamProgram Processed 223,000,000 records. Elapsed time: 00:06:02s. Time for last 1,000,000: 1s. Last read position: chr8:144,524,470 INFO 2026-06-03 19:58:45 SinglePassSamProgram Processed 224,000,000 records. Elapsed time: 00:06:03s. Time for last 1,000,000: 1s. Last read position: chr9:5,801,302 INFO 2026-06-03 19:58:46 SinglePassSamProgram Processed 225,000,000 records. Elapsed time: 00:06:04s. Time for last 1,000,000: 1s. Last read position: chr9:26,917,121 INFO 2026-06-03 19:58:48 SinglePassSamProgram Processed 226,000,000 records. Elapsed time: 00:06:06s. Time for last 1,000,000: 1s. Last read position: chr9:35,057,171 INFO 2026-06-03 19:58:50 SinglePassSamProgram Processed 227,000,000 records. Elapsed time: 00:06:08s. Time for last 1,000,000: 1s. Last read position: chr9:37,800,985 INFO 2026-06-03 19:58:51 SinglePassSamProgram Processed 228,000,000 records. Elapsed time: 00:06:09s. Time for last 1,000,000: 1s. Last read position: chr9:77,280,180 INFO 2026-06-03 19:58:53 SinglePassSamProgram Processed 229,000,000 records. Elapsed time: 00:06:10s. Time for last 1,000,000: 1s. Last read position: chr9:87,707,130 INFO 2026-06-03 19:58:54 SinglePassSamProgram Processed 230,000,000 records. Elapsed time: 00:06:12s. Time for last 1,000,000: 1s. Last read position: chr9:93,516,121 INFO 2026-06-03 19:58:56 SinglePassSamProgram Processed 231,000,000 records. Elapsed time: 00:06:14s. Time for last 1,000,000: 1s. Last read position: chr9:100,297,983 INFO 2026-06-03 19:58:58 SinglePassSamProgram Processed 232,000,000 records. Elapsed time: 00:06:16s. Time for last 1,000,000: 1s. Last read position: chr9:112,157,570 INFO 2026-06-03 19:59:00 SinglePassSamProgram Processed 233,000,000 records. Elapsed time: 00:06:17s. Time for last 1,000,000: 1s. Last read position: chr9:120,923,723 INFO 2026-06-03 19:59:01 SinglePassSamProgram Processed 234,000,000 records. Elapsed time: 00:06:19s. Time for last 1,000,000: 1s. Last read position: chr9:126,833,629 INFO 2026-06-03 19:59:03 SinglePassSamProgram Processed 235,000,000 records. Elapsed time: 00:06:20s. Time for last 1,000,000: 1s. Last read position: chr9:128,260,668 INFO 2026-06-03 19:59:04 SinglePassSamProgram Processed 236,000,000 records. Elapsed time: 00:06:22s. Time for last 1,000,000: 1s. Last read position: chr9:129,008,716 INFO 2026-06-03 19:59:06 SinglePassSamProgram Processed 237,000,000 records. Elapsed time: 00:06:24s. Time for last 1,000,000: 1s. Last read position: chr9:130,884,792 INFO 2026-06-03 19:59:08 SinglePassSamProgram Processed 238,000,000 records. Elapsed time: 00:06:26s. Time for last 1,000,000: 1s. Last read position: chr9:132,902,636 INFO 2026-06-03 19:59:09 SinglePassSamProgram Processed 239,000,000 records. Elapsed time: 00:06:27s. Time for last 1,000,000: 1s. Last read position: chr9:134,417,217 INFO 2026-06-03 19:59:11 SinglePassSamProgram Processed 240,000,000 records. Elapsed time: 00:06:29s. Time for last 1,000,000: 1s. Last read position: chr9:136,502,070 INFO 2026-06-03 19:59:13 SinglePassSamProgram Processed 241,000,000 records. Elapsed time: 00:06:31s. Time for last 1,000,000: 1s. Last read position: chr9:137,215,947 INFO 2026-06-03 19:59:15 SinglePassSamProgram Processed 242,000,000 records. Elapsed time: 00:06:32s. Time for last 1,000,000: 1s. Last read position: chr10:3,134,488 INFO 2026-06-03 19:59:16 SinglePassSamProgram Processed 243,000,000 records. Elapsed time: 00:06:34s. Time for last 1,000,000: 1s. Last read position: chr10:8,058,359 INFO 2026-06-03 19:59:18 SinglePassSamProgram Processed 244,000,000 records. Elapsed time: 00:06:36s. Time for last 1,000,000: 1s. Last read position: chr10:21,725,487 INFO 2026-06-03 19:59:20 SinglePassSamProgram Processed 245,000,000 records. Elapsed time: 00:06:38s. Time for last 1,000,000: 1s. Last read position: chr10:29,554,806 INFO 2026-06-03 19:59:22 SinglePassSamProgram Processed 246,000,000 records. Elapsed time: 00:06:39s. Time for last 1,000,000: 1s. Last read position: chr10:43,386,826 INFO 2026-06-03 19:59:23 SinglePassSamProgram Processed 247,000,000 records. Elapsed time: 00:06:41s. Time for last 1,000,000: 1s. Last read position: chr10:47,762,602 INFO 2026-06-03 19:59:25 SinglePassSamProgram Processed 248,000,000 records. Elapsed time: 00:06:43s. Time for last 1,000,000: 1s. Last read position: chr10:67,990,990 INFO 2026-06-03 19:59:27 SinglePassSamProgram Processed 249,000,000 records. Elapsed time: 00:06:45s. Time for last 1,000,000: 1s. Last read position: chr10:71,752,977 INFO 2026-06-03 19:59:29 SinglePassSamProgram Processed 250,000,000 records. Elapsed time: 00:06:46s. Time for last 1,000,000: 1s. Last read position: chr10:75,029,462 INFO 2026-06-03 19:59:30 SinglePassSamProgram Processed 251,000,000 records. Elapsed time: 00:06:48s. Time for last 1,000,000: 1s. Last read position: chr10:80,169,054 INFO 2026-06-03 19:59:32 SinglePassSamProgram Processed 252,000,000 records. Elapsed time: 00:06:50s. Time for last 1,000,000: 1s. Last read position: chr10:87,230,980 INFO 2026-06-03 19:59:34 SinglePassSamProgram Processed 253,000,000 records. Elapsed time: 00:06:52s. Time for last 1,000,000: 1s. Last read position: chr10:95,238,032 INFO 2026-06-03 19:59:36 SinglePassSamProgram Processed 254,000,000 records. Elapsed time: 00:06:54s. Time for last 1,000,000: 2s. Last read position: chr10:100,529,439 INFO 2026-06-03 19:59:38 SinglePassSamProgram Processed 255,000,000 records. Elapsed time: 00:06:56s. Time for last 1,000,000: 1s. Last read position: chr10:102,744,020 INFO 2026-06-03 19:59:40 SinglePassSamProgram Processed 256,000,000 records. Elapsed time: 00:06:57s. Time for last 1,000,000: 1s. Last read position: chr10:114,843,700 INFO 2026-06-03 19:59:42 SinglePassSamProgram Processed 257,000,000 records. Elapsed time: 00:06:59s. Time for last 1,000,000: 1s. Last read position: chr10:124,682,230 INFO 2026-06-03 19:59:43 SinglePassSamProgram Processed 258,000,000 records. Elapsed time: 00:07:01s. Time for last 1,000,000: 1s. Last read position: chr10:133,289,843 INFO 2026-06-03 19:59:45 SinglePassSamProgram Processed 259,000,000 records. Elapsed time: 00:07:03s. Time for last 1,000,000: 1s. Last read position: chr11:614,865 INFO 2026-06-03 19:59:47 SinglePassSamProgram Processed 260,000,000 records. Elapsed time: 00:07:05s. Time for last 1,000,000: 1s. Last read position: chr11:1,835,416 INFO 2026-06-03 19:59:49 SinglePassSamProgram Processed 261,000,000 records. Elapsed time: 00:07:06s. Time for last 1,000,000: 1s. Last read position: chr11:6,601,533 INFO 2026-06-03 19:59:50 SinglePassSamProgram Processed 262,000,000 records. Elapsed time: 00:07:08s. Time for last 1,000,000: 1s. Last read position: chr11:10,802,295 INFO 2026-06-03 19:59:52 SinglePassSamProgram Processed 263,000,000 records. Elapsed time: 00:07:10s. Time for last 1,000,000: 1s. Last read position: chr11:27,472,692 INFO 2026-06-03 19:59:54 SinglePassSamProgram Processed 264,000,000 records. Elapsed time: 00:07:12s. Time for last 1,000,000: 2s. Last read position: chr11:46,381,734 INFO 2026-06-03 19:59:56 SinglePassSamProgram Processed 265,000,000 records. Elapsed time: 00:07:14s. Time for last 1,000,000: 1s. Last read position: chr11:57,310,320 INFO 2026-06-03 19:59:58 SinglePassSamProgram Processed 266,000,000 records. Elapsed time: 00:07:16s. Time for last 1,000,000: 1s. Last read position: chr11:59,182,329 INFO 2026-06-03 19:59:59 SinglePassSamProgram Processed 267,000,000 records. Elapsed time: 00:07:17s. Time for last 1,000,000: 1s. Last read position: chr11:61,416,109 INFO 2026-06-03 20:00:01 SinglePassSamProgram Processed 268,000,000 records. Elapsed time: 00:07:19s. Time for last 1,000,000: 1s. Last read position: chr11:62,559,750 INFO 2026-06-03 20:00:03 SinglePassSamProgram Processed 269,000,000 records. Elapsed time: 00:07:21s. Time for last 1,000,000: 1s. Last read position: chr11:62,888,582 INFO 2026-06-03 20:00:04 SinglePassSamProgram Processed 270,000,000 records. Elapsed time: 00:07:22s. Time for last 1,000,000: 1s. Last read position: chr11:64,317,294 INFO 2026-06-03 20:00:06 SinglePassSamProgram Processed 271,000,000 records. Elapsed time: 00:07:24s. Time for last 1,000,000: 1s. Last read position: chr11:65,111,383 INFO 2026-06-03 20:00:08 SinglePassSamProgram Processed 272,000,000 records. Elapsed time: 00:07:26s. Time for last 1,000,000: 1s. Last read position: chr11:65,582,080 INFO 2026-06-03 20:00:09 SinglePassSamProgram Processed 273,000,000 records. Elapsed time: 00:07:27s. Time for last 1,000,000: 1s. Last read position: chr11:65,780,074 INFO 2026-06-03 20:00:11 SinglePassSamProgram Processed 274,000,000 records. Elapsed time: 00:07:29s. Time for last 1,000,000: 1s. Last read position: chr11:66,616,822 INFO 2026-06-03 20:00:13 SinglePassSamProgram Processed 275,000,000 records. Elapsed time: 00:07:31s. Time for last 1,000,000: 1s. Last read position: chr11:67,395,941 INFO 2026-06-03 20:00:15 SinglePassSamProgram Processed 276,000,000 records. Elapsed time: 00:07:32s. Time for last 1,000,000: 1s. Last read position: chr11:68,416,371 INFO 2026-06-03 20:00:16 SinglePassSamProgram Processed 277,000,000 records. Elapsed time: 00:07:34s. Time for last 1,000,000: 1s. Last read position: chr11:72,003,936 INFO 2026-06-03 20:00:18 SinglePassSamProgram Processed 278,000,000 records. Elapsed time: 00:07:36s. Time for last 1,000,000: 1s. Last read position: chr11:73,296,565 INFO 2026-06-03 20:00:20 SinglePassSamProgram Processed 279,000,000 records. Elapsed time: 00:07:37s. Time for last 1,000,000: 1s. Last read position: chr11:77,084,931 INFO 2026-06-03 20:00:21 SinglePassSamProgram Processed 280,000,000 records. Elapsed time: 00:07:39s. Time for last 1,000,000: 1s. Last read position: chr11:92,844,279 INFO 2026-06-03 20:00:23 SinglePassSamProgram Processed 281,000,000 records. Elapsed time: 00:07:41s. Time for last 1,000,000: 1s. Last read position: chr11:102,527,559 INFO 2026-06-03 20:00:25 SinglePassSamProgram Processed 282,000,000 records. Elapsed time: 00:07:42s. Time for last 1,000,000: 1s. Last read position: chr11:117,397,260 INFO 2026-06-03 20:00:26 SinglePassSamProgram Processed 283,000,000 records. Elapsed time: 00:07:44s. Time for last 1,000,000: 1s. Last read position: chr11:118,956,884 INFO 2026-06-03 20:00:28 SinglePassSamProgram Processed 284,000,000 records. Elapsed time: 00:07:46s. Time for last 1,000,000: 1s. Last read position: chr11:120,137,806 INFO 2026-06-03 20:00:30 SinglePassSamProgram Processed 285,000,000 records. Elapsed time: 00:07:47s. Time for last 1,000,000: 1s. Last read position: chr11:124,767,485 INFO 2026-06-03 20:00:31 SinglePassSamProgram Processed 286,000,000 records. Elapsed time: 00:07:49s. Time for last 1,000,000: 1s. Last read position: chr11:130,141,544 INFO 2026-06-03 20:00:33 SinglePassSamProgram Processed 287,000,000 records. Elapsed time: 00:07:50s. Time for last 1,000,000: 1s. Last read position: chr12:2,803,164 INFO 2026-06-03 20:00:34 SinglePassSamProgram Processed 288,000,000 records. Elapsed time: 00:07:52s. Time for last 1,000,000: 1s. Last read position: chr12:6,573,203 INFO 2026-06-03 20:00:36 SinglePassSamProgram Processed 289,000,000 records. Elapsed time: 00:07:53s. Time for last 1,000,000: 1s. Last read position: chr12:6,956,507 INFO 2026-06-03 20:00:37 SinglePassSamProgram Processed 290,000,000 records. Elapsed time: 00:07:55s. Time for last 1,000,000: 1s. Last read position: chr12:10,723,028 INFO 2026-06-03 20:00:39 SinglePassSamProgram Processed 291,000,000 records. Elapsed time: 00:07:57s. Time for last 1,000,000: 1s. Last read position: chr12:21,638,430 INFO 2026-06-03 20:00:41 SinglePassSamProgram Processed 292,000,000 records. Elapsed time: 00:07:58s. Time for last 1,000,000: 1s. Last read position: chr12:45,924,855 INFO 2026-06-03 20:00:42 SinglePassSamProgram Processed 293,000,000 records. Elapsed time: 00:08:00s. Time for last 1,000,000: 1s. Last read position: chr12:49,040,435 INFO 2026-06-03 20:00:44 SinglePassSamProgram Processed 294,000,000 records. Elapsed time: 00:08:02s. Time for last 1,000,000: 1s. Last read position: chr12:49,759,233 INFO 2026-06-03 20:00:46 SinglePassSamProgram Processed 295,000,000 records. Elapsed time: 00:08:04s. Time for last 1,000,000: 1s. Last read position: chr12:52,245,581 INFO 2026-06-03 20:00:48 SinglePassSamProgram Processed 296,000,000 records. Elapsed time: 00:08:06s. Time for last 1,000,000: 1s. Last read position: chr12:53,383,204 INFO 2026-06-03 20:00:50 SinglePassSamProgram Processed 297,000,000 records. Elapsed time: 00:08:08s. Time for last 1,000,000: 1s. Last read position: chr12:55,413,879 INFO 2026-06-03 20:00:51 SinglePassSamProgram Processed 298,000,000 records. Elapsed time: 00:08:09s. Time for last 1,000,000: 1s. Last read position: chr12:56,164,321 INFO 2026-06-03 20:00:53 SinglePassSamProgram Processed 299,000,000 records. Elapsed time: 00:08:11s. Time for last 1,000,000: 1s. Last read position: chr12:56,720,194 INFO 2026-06-03 20:00:55 SinglePassSamProgram Processed 300,000,000 records. Elapsed time: 00:08:13s. Time for last 1,000,000: 1s. Last read position: chr12:57,254,878 INFO 2026-06-03 20:00:56 SinglePassSamProgram Processed 301,000,000 records. Elapsed time: 00:08:14s. Time for last 1,000,000: 1s. Last read position: chr12:66,153,402 INFO 2026-06-03 20:00:58 SinglePassSamProgram Processed 302,000,000 records. Elapsed time: 00:08:16s. Time for last 1,000,000: 1s. Last read position: chr12:82,756,539 INFO 2026-06-03 20:00:59 SinglePassSamProgram Processed 303,000,000 records. Elapsed time: 00:08:17s. Time for last 1,000,000: 1s. Last read position: chr12:101,697,963 INFO 2026-06-03 20:01:01 SinglePassSamProgram Processed 304,000,000 records. Elapsed time: 00:08:19s. Time for last 1,000,000: 1s. Last read position: chr12:110,327,582 INFO 2026-06-03 20:01:03 SinglePassSamProgram Processed 305,000,000 records. Elapsed time: 00:08:21s. Time for last 1,000,000: 1s. Last read position: chr12:112,941,632 INFO 2026-06-03 20:01:05 SinglePassSamProgram Processed 306,000,000 records. Elapsed time: 00:08:23s. Time for last 1,000,000: 1s. Last read position: chr12:118,034,167 INFO 2026-06-03 20:01:07 SinglePassSamProgram Processed 307,000,000 records. Elapsed time: 00:08:24s. Time for last 1,000,000: 1s. Last read position: chr12:120,534,827 INFO 2026-06-03 20:01:08 SinglePassSamProgram Processed 308,000,000 records. Elapsed time: 00:08:26s. Time for last 1,000,000: 1s. Last read position: chr12:122,702,286 INFO 2026-06-03 20:01:10 SinglePassSamProgram Processed 309,000,000 records. Elapsed time: 00:08:28s. Time for last 1,000,000: 1s. Last read position: chr12:124,993,992 INFO 2026-06-03 20:01:12 SinglePassSamProgram Processed 310,000,000 records. Elapsed time: 00:08:29s. Time for last 1,000,000: 1s. Last read position: chr12:132,582,059 INFO 2026-06-03 20:01:13 SinglePassSamProgram Processed 311,000,000 records. Elapsed time: 00:08:31s. Time for last 1,000,000: 1s. Last read position: chr13:20,059,445 INFO 2026-06-03 20:01:15 SinglePassSamProgram Processed 312,000,000 records. Elapsed time: 00:08:33s. Time for last 1,000,000: 1s. Last read position: chr13:33,053,899 INFO 2026-06-03 20:01:17 SinglePassSamProgram Processed 313,000,000 records. Elapsed time: 00:08:35s. Time for last 1,000,000: 1s. Last read position: chr13:54,408,886 INFO 2026-06-03 20:01:19 SinglePassSamProgram Processed 314,000,000 records. Elapsed time: 00:08:36s. Time for last 1,000,000: 1s. Last read position: chr13:98,143,393 INFO 2026-06-03 20:01:20 SinglePassSamProgram Processed 315,000,000 records. Elapsed time: 00:08:38s. Time for last 1,000,000: 1s. Last read position: chr13:109,783,822 INFO 2026-06-03 20:01:22 SinglePassSamProgram Processed 316,000,000 records. Elapsed time: 00:08:40s. Time for last 1,000,000: 1s. Last read position: chr13:113,823,382 INFO 2026-06-03 20:01:24 SinglePassSamProgram Processed 317,000,000 records. Elapsed time: 00:08:42s. Time for last 1,000,000: 1s. Last read position: chr14:21,523,628 INFO 2026-06-03 20:01:26 SinglePassSamProgram Processed 318,000,000 records. Elapsed time: 00:08:44s. Time for last 1,000,000: 1s. Last read position: chr14:23,557,218 INFO 2026-06-03 20:01:27 SinglePassSamProgram Processed 319,000,000 records. Elapsed time: 00:08:45s. Time for last 1,000,000: 1s. Last read position: chr14:24,432,290 INFO 2026-06-03 20:01:29 SinglePassSamProgram Processed 320,000,000 records. Elapsed time: 00:08:47s. Time for last 1,000,000: 1s. Last read position: chr14:49,585,969 INFO 2026-06-03 20:01:31 SinglePassSamProgram Processed 321,000,000 records. Elapsed time: 00:08:48s. Time for last 1,000,000: 1s. Last read position: chr14:55,636,446 INFO 2026-06-03 20:01:32 SinglePassSamProgram Processed 322,000,000 records. Elapsed time: 00:08:50s. Time for last 1,000,000: 1s. Last read position: chr14:65,077,974 INFO 2026-06-03 20:01:34 SinglePassSamProgram Processed 323,000,000 records. Elapsed time: 00:08:52s. Time for last 1,000,000: 1s. Last read position: chr14:73,284,165 INFO 2026-06-03 20:01:36 SinglePassSamProgram Processed 324,000,000 records. Elapsed time: 00:08:54s. Time for last 1,000,000: 1s. Last read position: chr14:77,025,739 INFO 2026-06-03 20:01:38 SinglePassSamProgram Processed 325,000,000 records. Elapsed time: 00:08:55s. Time for last 1,000,000: 1s. Last read position: chr14:92,116,196 INFO 2026-06-03 20:01:40 SinglePassSamProgram Processed 326,000,000 records. Elapsed time: 00:08:57s. Time for last 1,000,000: 1s. Last read position: chr14:102,008,327 INFO 2026-06-03 20:01:41 SinglePassSamProgram Processed 327,000,000 records. Elapsed time: 00:08:59s. Time for last 1,000,000: 1s. Last read position: chr14:103,492,024 INFO 2026-06-03 20:01:43 SinglePassSamProgram Processed 328,000,000 records. Elapsed time: 00:09:01s. Time for last 1,000,000: 1s. Last read position: chr14:105,379,745 INFO 2026-06-03 20:01:45 SinglePassSamProgram Processed 329,000,000 records. Elapsed time: 00:09:02s. Time for last 1,000,000: 1s. Last read position: chr15:29,716,701 INFO 2026-06-03 20:01:46 SinglePassSamProgram Processed 330,000,000 records. Elapsed time: 00:09:04s. Time for last 1,000,000: 1s. Last read position: chr15:40,036,989 INFO 2026-06-03 20:01:48 SinglePassSamProgram Processed 331,000,000 records. Elapsed time: 00:09:06s. Time for last 1,000,000: 1s. Last read position: chr15:41,835,087 INFO 2026-06-03 20:01:50 SinglePassSamProgram Processed 332,000,000 records. Elapsed time: 00:09:07s. Time for last 1,000,000: 1s. Last read position: chr15:43,809,771 INFO 2026-06-03 20:01:51 SinglePassSamProgram Processed 333,000,000 records. Elapsed time: 00:09:09s. Time for last 1,000,000: 1s. Last read position: chr15:57,063,805 INFO 2026-06-03 20:01:53 SinglePassSamProgram Processed 334,000,000 records. Elapsed time: 00:09:11s. Time for last 1,000,000: 1s. Last read position: chr15:64,160,123 INFO 2026-06-03 20:01:55 SinglePassSamProgram Processed 335,000,000 records. Elapsed time: 00:09:12s. Time for last 1,000,000: 1s. Last read position: chr15:72,207,156 INFO 2026-06-03 20:01:56 SinglePassSamProgram Processed 336,000,000 records. Elapsed time: 00:09:14s. Time for last 1,000,000: 1s. Last read position: chr15:75,048,283 INFO 2026-06-03 20:01:58 SinglePassSamProgram Processed 337,000,000 records. Elapsed time: 00:09:16s. Time for last 1,000,000: 1s. Last read position: chr15:78,922,086 INFO 2026-06-03 20:02:00 SinglePassSamProgram Processed 338,000,000 records. Elapsed time: 00:09:17s. Time for last 1,000,000: 1s. Last read position: chr15:85,194,870 INFO 2026-06-03 20:02:02 SinglePassSamProgram Processed 339,000,000 records. Elapsed time: 00:09:19s. Time for last 1,000,000: 1s. Last read position: chr15:90,948,664 INFO 2026-06-03 20:02:03 SinglePassSamProgram Processed 340,000,000 records. Elapsed time: 00:09:21s. Time for last 1,000,000: 1s. Last read position: chr16:502,959 INFO 2026-06-03 20:02:04 SinglePassSamProgram Processed 341,000,000 records. Elapsed time: 00:09:22s. Time for last 1,000,000: 1s. Last read position: chr16:1,592,180 INFO 2026-06-03 20:02:06 SinglePassSamProgram Processed 342,000,000 records. Elapsed time: 00:09:24s. Time for last 1,000,000: 1s. Last read position: chr16:2,135,510 INFO 2026-06-03 20:02:08 SinglePassSamProgram Processed 343,000,000 records. Elapsed time: 00:09:25s. Time for last 1,000,000: 1s. Last read position: chr16:2,767,570 INFO 2026-06-03 20:02:09 SinglePassSamProgram Processed 344,000,000 records. Elapsed time: 00:09:27s. Time for last 1,000,000: 1s. Last read position: chr16:4,341,387 INFO 2026-06-03 20:02:11 SinglePassSamProgram Processed 345,000,000 records. Elapsed time: 00:09:29s. Time for last 1,000,000: 1s. Last read position: chr16:8,902,107 INFO 2026-06-03 20:02:13 SinglePassSamProgram Processed 346,000,000 records. Elapsed time: 00:09:31s. Time for last 1,000,000: 1s. Last read position: chr16:11,927,779 INFO 2026-06-03 20:02:15 SinglePassSamProgram Processed 347,000,000 records. Elapsed time: 00:09:32s. Time for last 1,000,000: 1s. Last read position: chr16:14,921,313 INFO 2026-06-03 20:02:16 SinglePassSamProgram Processed 348,000,000 records. Elapsed time: 00:09:34s. Time for last 1,000,000: 1s. Last read position: chr16:15,137,342 INFO 2026-06-03 20:02:18 SinglePassSamProgram Processed 349,000,000 records. Elapsed time: 00:09:36s. Time for last 1,000,000: 1s. Last read position: chr16:16,323,172 INFO 2026-06-03 20:02:19 SinglePassSamProgram Processed 350,000,000 records. Elapsed time: 00:09:37s. Time for last 1,000,000: 1s. Last read position: chr16:18,318,230 INFO 2026-06-03 20:02:21 SinglePassSamProgram Processed 351,000,000 records. Elapsed time: 00:09:39s. Time for last 1,000,000: 1s. Last read position: chr16:18,401,603 INFO 2026-06-03 20:02:23 SinglePassSamProgram Processed 352,000,000 records. Elapsed time: 00:09:41s. Time for last 1,000,000: 2s. Last read position: chr16:19,537,076 INFO 2026-06-03 20:02:25 SinglePassSamProgram Processed 353,000,000 records. Elapsed time: 00:09:43s. Time for last 1,000,000: 1s. Last read position: chr16:21,405,030 INFO 2026-06-03 20:02:27 SinglePassSamProgram Processed 354,000,000 records. Elapsed time: 00:09:45s. Time for last 1,000,000: 1s. Last read position: chr16:21,836,967 INFO 2026-06-03 20:02:29 SinglePassSamProgram Processed 355,000,000 records. Elapsed time: 00:09:47s. Time for last 1,000,000: 2s. Last read position: chr16:22,485,948 INFO 2026-06-03 20:02:31 SinglePassSamProgram Processed 356,000,000 records. Elapsed time: 00:09:48s. Time for last 1,000,000: 1s. Last read position: chr16:22,535,284 INFO 2026-06-03 20:02:32 SinglePassSamProgram Processed 357,000,000 records. Elapsed time: 00:09:50s. Time for last 1,000,000: 1s. Last read position: chr16:23,687,549 INFO 2026-06-03 20:02:34 SinglePassSamProgram Processed 358,000,000 records. Elapsed time: 00:09:52s. Time for last 1,000,000: 1s. Last read position: chr16:28,403,529 INFO 2026-06-03 20:02:36 SinglePassSamProgram Processed 359,000,000 records. Elapsed time: 00:09:54s. Time for last 1,000,000: 1s. Last read position: chr16:28,843,736 INFO 2026-06-03 20:02:38 SinglePassSamProgram Processed 360,000,000 records. Elapsed time: 00:09:55s. Time for last 1,000,000: 1s. Last read position: chr16:29,384,002 INFO 2026-06-03 20:02:39 SinglePassSamProgram Processed 361,000,000 records. Elapsed time: 00:09:57s. Time for last 1,000,000: 1s. Last read position: chr16:29,541,603 INFO 2026-06-03 20:02:41 SinglePassSamProgram Processed 362,000,000 records. Elapsed time: 00:09:58s. Time for last 1,000,000: 1s. Last read position: chr16:29,807,348 INFO 2026-06-03 20:02:42 SinglePassSamProgram Processed 363,000,000 records. Elapsed time: 00:10:00s. Time for last 1,000,000: 1s. Last read position: chr16:29,861,275 INFO 2026-06-03 20:02:44 SinglePassSamProgram Processed 364,000,000 records. Elapsed time: 00:10:02s. Time for last 1,000,000: 1s. Last read position: chr16:29,991,233 INFO 2026-06-03 20:02:46 SinglePassSamProgram Processed 365,000,000 records. Elapsed time: 00:10:03s. Time for last 1,000,000: 1s. Last read position: chr16:30,223,624 INFO 2026-06-03 20:02:47 SinglePassSamProgram Processed 366,000,000 records. Elapsed time: 00:10:05s. Time for last 1,000,000: 1s. Last read position: chr16:30,665,040 INFO 2026-06-03 20:02:49 SinglePassSamProgram Processed 367,000,000 records. Elapsed time: 00:10:06s. Time for last 1,000,000: 1s. Last read position: chr16:31,076,383 INFO 2026-06-03 20:02:50 SinglePassSamProgram Processed 368,000,000 records. Elapsed time: 00:10:08s. Time for last 1,000,000: 1s. Last read position: chr16:47,155,645 INFO 2026-06-03 20:02:52 SinglePassSamProgram Processed 369,000,000 records. Elapsed time: 00:10:09s. Time for last 1,000,000: 1s. Last read position: chr16:57,154,463 INFO 2026-06-03 20:02:54 SinglePassSamProgram Processed 370,000,000 records. Elapsed time: 00:10:12s. Time for last 1,000,000: 2s. Last read position: chr16:66,742,570 INFO 2026-06-03 20:02:56 SinglePassSamProgram Processed 371,000,000 records. Elapsed time: 00:10:13s. Time for last 1,000,000: 1s. Last read position: chr16:67,930,933 INFO 2026-06-03 20:02:57 SinglePassSamProgram Processed 372,000,000 records. Elapsed time: 00:10:15s. Time for last 1,000,000: 1s. Last read position: chr16:69,447,184 INFO 2026-06-03 20:02:58 SinglePassSamProgram Processed 373,000,000 records. Elapsed time: 00:10:16s. Time for last 1,000,000: 1s. Last read position: chr16:70,664,667 INFO 2026-06-03 20:03:00 SinglePassSamProgram Processed 374,000,000 records. Elapsed time: 00:10:18s. Time for last 1,000,000: 1s. Last read position: chr16:72,798,427 INFO 2026-06-03 20:03:02 SinglePassSamProgram Processed 375,000,000 records. Elapsed time: 00:10:20s. Time for last 1,000,000: 1s. Last read position: chr16:75,656,492 INFO 2026-06-03 20:03:04 SinglePassSamProgram Processed 376,000,000 records. Elapsed time: 00:10:22s. Time for last 1,000,000: 1s. Last read position: chr16:85,710,150 INFO 2026-06-03 20:03:06 SinglePassSamProgram Processed 377,000,000 records. Elapsed time: 00:10:23s. Time for last 1,000,000: 1s. Last read position: chr16:89,290,740 INFO 2026-06-03 20:03:07 SinglePassSamProgram Processed 378,000,000 records. Elapsed time: 00:10:25s. Time for last 1,000,000: 1s. Last read position: chr17:710,583 INFO 2026-06-03 20:03:09 SinglePassSamProgram Processed 379,000,000 records. Elapsed time: 00:10:27s. Time for last 1,000,000: 1s. Last read position: chr17:1,683,569 INFO 2026-06-03 20:03:11 SinglePassSamProgram Processed 380,000,000 records. Elapsed time: 00:10:29s. Time for last 1,000,000: 1s. Last read position: chr17:3,885,578 INFO 2026-06-03 20:03:13 SinglePassSamProgram Processed 381,000,000 records. Elapsed time: 00:10:30s. Time for last 1,000,000: 1s. Last read position: chr17:5,000,283 INFO 2026-06-03 20:03:14 SinglePassSamProgram Processed 382,000,000 records. Elapsed time: 00:10:32s. Time for last 1,000,000: 1s. Last read position: chr17:7,311,601 INFO 2026-06-03 20:03:16 SinglePassSamProgram Processed 383,000,000 records. Elapsed time: 00:10:34s. Time for last 1,000,000: 1s. Last read position: chr17:7,513,659 INFO 2026-06-03 20:03:18 SinglePassSamProgram Processed 384,000,000 records. Elapsed time: 00:10:35s. Time for last 1,000,000: 1s. Last read position: chr17:7,898,530 INFO 2026-06-03 20:03:19 SinglePassSamProgram Processed 385,000,000 records. Elapsed time: 00:10:37s. Time for last 1,000,000: 1s. Last read position: chr17:15,704,263 INFO 2026-06-03 20:03:21 SinglePassSamProgram Processed 386,000,000 records. Elapsed time: 00:10:39s. Time for last 1,000,000: 1s. Last read position: chr17:17,816,608 INFO 2026-06-03 20:03:23 SinglePassSamProgram Processed 387,000,000 records. Elapsed time: 00:10:40s. Time for last 1,000,000: 1s. Last read position: chr17:27,311,559 INFO 2026-06-03 20:03:25 SinglePassSamProgram Processed 388,000,000 records. Elapsed time: 00:10:42s. Time for last 1,000,000: 1s. Last read position: chr17:28,720,018 INFO 2026-06-03 20:03:27 SinglePassSamProgram Processed 389,000,000 records. Elapsed time: 00:10:44s. Time for last 1,000,000: 1s. Last read position: chr17:30,481,244 INFO 2026-06-03 20:03:29 SinglePassSamProgram Processed 390,000,000 records. Elapsed time: 00:10:46s. Time for last 1,000,000: 1s. Last read position: chr17:35,422,484 INFO 2026-06-03 20:03:30 SinglePassSamProgram Processed 391,000,000 records. Elapsed time: 00:10:48s. Time for last 1,000,000: 1s. Last read position: chr17:36,496,340 INFO 2026-06-03 20:03:32 SinglePassSamProgram Processed 392,000,000 records. Elapsed time: 00:10:49s. Time for last 1,000,000: 1s. Last read position: chr17:38,138,333 INFO 2026-06-03 20:03:33 SinglePassSamProgram Processed 393,000,000 records. Elapsed time: 00:10:51s. Time for last 1,000,000: 1s. Last read position: chr17:38,673,900 INFO 2026-06-03 20:03:35 SinglePassSamProgram Processed 394,000,000 records. Elapsed time: 00:10:53s. Time for last 1,000,000: 1s. Last read position: chr17:39,662,282 INFO 2026-06-03 20:03:36 SinglePassSamProgram Processed 395,000,000 records. Elapsed time: 00:10:54s. Time for last 1,000,000: 1s. Last read position: chr17:39,710,341 INFO 2026-06-03 20:03:37 SinglePassSamProgram Processed 396,000,000 records. Elapsed time: 00:10:55s. Time for last 1,000,000: 1s. Last read position: chr17:39,717,337 INFO 2026-06-03 20:03:38 SinglePassSamProgram Processed 397,000,000 records. Elapsed time: 00:10:56s. Time for last 1,000,000: 1s. Last read position: chr17:39,726,576 INFO 2026-06-03 20:03:40 SinglePassSamProgram Processed 398,000,000 records. Elapsed time: 00:10:58s. Time for last 1,000,000: 1s. Last read position: chr17:40,096,381 INFO 2026-06-03 20:03:42 SinglePassSamProgram Processed 399,000,000 records. Elapsed time: 00:11:00s. Time for last 1,000,000: 1s. Last read position: chr17:40,880,756 INFO 2026-06-03 20:03:44 SinglePassSamProgram Processed 400,000,000 records. Elapsed time: 00:11:02s. Time for last 1,000,000: 2s. Last read position: chr17:41,878,134 INFO 2026-06-03 20:03:46 SinglePassSamProgram Processed 401,000,000 records. Elapsed time: 00:11:04s. Time for last 1,000,000: 2s. Last read position: chr17:42,775,451 INFO 2026-06-03 20:03:48 SinglePassSamProgram Processed 402,000,000 records. Elapsed time: 00:11:06s. Time for last 1,000,000: 2s. Last read position: chr17:44,320,050 INFO 2026-06-03 20:03:50 SinglePassSamProgram Processed 403,000,000 records. Elapsed time: 00:11:08s. Time for last 1,000,000: 1s. Last read position: chr17:45,396,270 INFO 2026-06-03 20:03:51 SinglePassSamProgram Processed 404,000,000 records. Elapsed time: 00:11:09s. Time for last 1,000,000: 1s. Last read position: chr17:47,601,660 INFO 2026-06-03 20:03:53 SinglePassSamProgram Processed 405,000,000 records. Elapsed time: 00:11:11s. Time for last 1,000,000: 1s. Last read position: chr17:50,141,345 INFO 2026-06-03 20:03:55 SinglePassSamProgram Processed 406,000,000 records. Elapsed time: 00:11:12s. Time for last 1,000,000: 1s. Last read position: chr17:50,462,492 INFO 2026-06-03 20:03:56 SinglePassSamProgram Processed 407,000,000 records. Elapsed time: 00:11:14s. Time for last 1,000,000: 1s. Last read position: chr17:56,978,184 INFO 2026-06-03 20:03:58 SinglePassSamProgram Processed 408,000,000 records. Elapsed time: 00:11:16s. Time for last 1,000,000: 1s. Last read position: chr17:59,681,355 INFO 2026-06-03 20:04:00 SinglePassSamProgram Processed 409,000,000 records. Elapsed time: 00:11:18s. Time for last 1,000,000: 2s. Last read position: chr17:62,031,514 INFO 2026-06-03 20:04:02 SinglePassSamProgram Processed 410,000,000 records. Elapsed time: 00:11:20s. Time for last 1,000,000: 2s. Last read position: chr17:64,504,274 INFO 2026-06-03 20:04:04 SinglePassSamProgram Processed 411,000,000 records. Elapsed time: 00:11:22s. Time for last 1,000,000: 1s. Last read position: chr17:68,523,745 INFO 2026-06-03 20:04:06 SinglePassSamProgram Processed 412,000,000 records. Elapsed time: 00:11:24s. Time for last 1,000,000: 2s. Last read position: chr17:75,233,081 INFO 2026-06-03 20:04:08 SinglePassSamProgram Processed 413,000,000 records. Elapsed time: 00:11:26s. Time for last 1,000,000: 1s. Last read position: chr17:75,750,249 INFO 2026-06-03 20:04:10 SinglePassSamProgram Processed 414,000,000 records. Elapsed time: 00:11:28s. Time for last 1,000,000: 1s. Last read position: chr17:76,008,385 INFO 2026-06-03 20:04:12 SinglePassSamProgram Processed 415,000,000 records. Elapsed time: 00:11:30s. Time for last 1,000,000: 2s. Last read position: chr17:76,270,329 INFO 2026-06-03 20:04:14 SinglePassSamProgram Processed 416,000,000 records. Elapsed time: 00:11:32s. Time for last 1,000,000: 1s. Last read position: chr17:78,870,898 INFO 2026-06-03 20:04:16 SinglePassSamProgram Processed 417,000,000 records. Elapsed time: 00:11:33s. Time for last 1,000,000: 1s. Last read position: chr17:80,340,276 INFO 2026-06-03 20:04:17 SinglePassSamProgram Processed 418,000,000 records. Elapsed time: 00:11:35s. Time for last 1,000,000: 1s. Last read position: chr17:81,512,253 INFO 2026-06-03 20:04:19 SinglePassSamProgram Processed 419,000,000 records. Elapsed time: 00:11:37s. Time for last 1,000,000: 1s. Last read position: chr17:81,909,311 INFO 2026-06-03 20:04:21 SinglePassSamProgram Processed 420,000,000 records. Elapsed time: 00:11:39s. Time for last 1,000,000: 1s. Last read position: chr17:82,088,530 INFO 2026-06-03 20:04:23 SinglePassSamProgram Processed 421,000,000 records. Elapsed time: 00:11:40s. Time for last 1,000,000: 1s. Last read position: chr18:214,653 INFO 2026-06-03 20:04:25 SinglePassSamProgram Processed 422,000,000 records. Elapsed time: 00:11:42s. Time for last 1,000,000: 1s. Last read position: chr18:8,706,326 INFO 2026-06-03 20:04:26 SinglePassSamProgram Processed 423,000,000 records. Elapsed time: 00:11:44s. Time for last 1,000,000: 1s. Last read position: chr18:20,984,410 INFO 2026-06-03 20:04:28 SinglePassSamProgram Processed 424,000,000 records. Elapsed time: 00:11:46s. Time for last 1,000,000: 1s. Last read position: chr18:36,124,677 INFO 2026-06-03 20:04:30 SinglePassSamProgram Processed 425,000,000 records. Elapsed time: 00:11:47s. Time for last 1,000,000: 1s. Last read position: chr18:49,929,512 INFO 2026-06-03 20:04:31 SinglePassSamProgram Processed 426,000,000 records. Elapsed time: 00:11:49s. Time for last 1,000,000: 1s. Last read position: chr18:58,335,473 INFO 2026-06-03 20:04:33 SinglePassSamProgram Processed 427,000,000 records. Elapsed time: 00:11:51s. Time for last 1,000,000: 1s. Last read position: chr18:74,513,577 INFO 2026-06-03 20:04:35 SinglePassSamProgram Processed 428,000,000 records. Elapsed time: 00:11:53s. Time for last 1,000,000: 1s. Last read position: chr19:808,691 INFO 2026-06-03 20:04:37 SinglePassSamProgram Processed 429,000,000 records. Elapsed time: 00:11:55s. Time for last 1,000,000: 1s. Last read position: chr19:1,360,888 INFO 2026-06-03 20:04:39 SinglePassSamProgram Processed 430,000,000 records. Elapsed time: 00:11:56s. Time for last 1,000,000: 1s. Last read position: chr19:1,881,264 INFO 2026-06-03 20:04:40 SinglePassSamProgram Processed 431,000,000 records. Elapsed time: 00:11:58s. Time for last 1,000,000: 1s. Last read position: chr19:2,639,745 INFO 2026-06-03 20:04:42 SinglePassSamProgram Processed 432,000,000 records. Elapsed time: 00:12:00s. Time for last 1,000,000: 1s. Last read position: chr19:4,117,520 INFO 2026-06-03 20:04:44 SinglePassSamProgram Processed 433,000,000 records. Elapsed time: 00:12:02s. Time for last 1,000,000: 1s. Last read position: chr19:5,119,831 INFO 2026-06-03 20:04:46 SinglePassSamProgram Processed 434,000,000 records. Elapsed time: 00:12:03s. Time for last 1,000,000: 1s. Last read position: chr19:6,222,626 INFO 2026-06-03 20:04:48 SinglePassSamProgram Processed 435,000,000 records. Elapsed time: 00:12:05s. Time for last 1,000,000: 1s. Last read position: chr19:7,617,649 INFO 2026-06-03 20:04:50 SinglePassSamProgram Processed 436,000,000 records. Elapsed time: 00:12:07s. Time for last 1,000,000: 2s. Last read position: chr19:9,980,680 INFO 2026-06-03 20:04:51 SinglePassSamProgram Processed 437,000,000 records. Elapsed time: 00:12:09s. Time for last 1,000,000: 1s. Last read position: chr19:10,678,652 INFO 2026-06-03 20:04:53 SinglePassSamProgram Processed 438,000,000 records. Elapsed time: 00:12:10s. Time for last 1,000,000: 1s. Last read position: chr19:11,204,205 INFO 2026-06-03 20:04:54 SinglePassSamProgram Processed 439,000,000 records. Elapsed time: 00:12:12s. Time for last 1,000,000: 1s. Last read position: chr19:12,719,138 INFO 2026-06-03 20:04:56 SinglePassSamProgram Processed 440,000,000 records. Elapsed time: 00:12:14s. Time for last 1,000,000: 1s. Last read position: chr19:13,906,382 INFO 2026-06-03 20:04:58 SinglePassSamProgram Processed 441,000,000 records. Elapsed time: 00:12:16s. Time for last 1,000,000: 1s. Last read position: chr19:14,565,794 INFO 2026-06-03 20:04:59 SinglePassSamProgram Processed 442,000,000 records. Elapsed time: 00:12:17s. Time for last 1,000,000: 1s. Last read position: chr19:15,255,308 INFO 2026-06-03 20:05:01 SinglePassSamProgram Processed 443,000,000 records. Elapsed time: 00:12:19s. Time for last 1,000,000: 1s. Last read position: chr19:16,198,032 INFO 2026-06-03 20:05:03 SinglePassSamProgram Processed 444,000,000 records. Elapsed time: 00:12:21s. Time for last 1,000,000: 1s. Last read position: chr19:17,301,019 INFO 2026-06-03 20:05:05 SinglePassSamProgram Processed 445,000,000 records. Elapsed time: 00:12:23s. Time for last 1,000,000: 1s. Last read position: chr19:18,386,179 INFO 2026-06-03 20:05:07 SinglePassSamProgram Processed 446,000,000 records. Elapsed time: 00:12:24s. Time for last 1,000,000: 1s. Last read position: chr19:19,194,094 INFO 2026-06-03 20:05:08 SinglePassSamProgram Processed 447,000,000 records. Elapsed time: 00:12:26s. Time for last 1,000,000: 1s. Last read position: chr19:29,208,081 INFO 2026-06-03 20:05:09 SinglePassSamProgram Processed 448,000,000 records. Elapsed time: 00:12:27s. Time for last 1,000,000: 1s. Last read position: chr19:34,341,996 INFO 2026-06-03 20:05:11 SinglePassSamProgram Processed 449,000,000 records. Elapsed time: 00:12:29s. Time for last 1,000,000: 1s. Last read position: chr19:35,267,822 INFO 2026-06-03 20:05:13 SinglePassSamProgram Processed 450,000,000 records. Elapsed time: 00:12:31s. Time for last 1,000,000: 2s. Last read position: chr19:35,720,662 INFO 2026-06-03 20:05:14 SinglePassSamProgram Processed 451,000,000 records. Elapsed time: 00:12:32s. Time for last 1,000,000: 1s. Last read position: chr19:36,140,045 INFO 2026-06-03 20:05:16 SinglePassSamProgram Processed 452,000,000 records. Elapsed time: 00:12:34s. Time for last 1,000,000: 1s. Last read position: chr19:38,387,054 INFO 2026-06-03 20:05:18 SinglePassSamProgram Processed 453,000,000 records. Elapsed time: 00:12:35s. Time for last 1,000,000: 1s. Last read position: chr19:39,386,068 INFO 2026-06-03 20:05:19 SinglePassSamProgram Processed 454,000,000 records. Elapsed time: 00:12:37s. Time for last 1,000,000: 1s. Last read position: chr19:40,272,804 INFO 2026-06-03 20:05:21 SinglePassSamProgram Processed 455,000,000 records. Elapsed time: 00:12:39s. Time for last 1,000,000: 1s. Last read position: chr19:41,895,475 INFO 2026-06-03 20:05:23 SinglePassSamProgram Processed 456,000,000 records. Elapsed time: 00:12:41s. Time for last 1,000,000: 1s. Last read position: chr19:42,293,118 INFO 2026-06-03 20:05:25 SinglePassSamProgram Processed 457,000,000 records. Elapsed time: 00:12:43s. Time for last 1,000,000: 1s. Last read position: chr19:44,266,855 INFO 2026-06-03 20:05:27 SinglePassSamProgram Processed 458,000,000 records. Elapsed time: 00:12:45s. Time for last 1,000,000: 2s. Last read position: chr19:45,348,796 INFO 2026-06-03 20:05:29 SinglePassSamProgram Processed 459,000,000 records. Elapsed time: 00:12:47s. Time for last 1,000,000: 2s. Last read position: chr19:45,901,564 INFO 2026-06-03 20:05:31 SinglePassSamProgram Processed 460,000,000 records. Elapsed time: 00:12:49s. Time for last 1,000,000: 1s. Last read position: chr19:47,694,463 INFO 2026-06-03 20:05:33 SinglePassSamProgram Processed 461,000,000 records. Elapsed time: 00:12:51s. Time for last 1,000,000: 1s. Last read position: chr19:48,799,791 INFO 2026-06-03 20:05:35 SinglePassSamProgram Processed 462,000,000 records. Elapsed time: 00:12:52s. Time for last 1,000,000: 1s. Last read position: chr19:49,489,854 INFO 2026-06-03 20:05:36 SinglePassSamProgram Processed 463,000,000 records. Elapsed time: 00:12:54s. Time for last 1,000,000: 1s. Last read position: chr19:49,792,994 INFO 2026-06-03 20:05:38 SinglePassSamProgram Processed 464,000,000 records. Elapsed time: 00:12:56s. Time for last 1,000,000: 2s. Last read position: chr19:50,309,165 INFO 2026-06-03 20:05:40 SinglePassSamProgram Processed 465,000,000 records. Elapsed time: 00:12:58s. Time for last 1,000,000: 2s. Last read position: chr19:53,398,014 INFO 2026-06-03 20:05:42 SinglePassSamProgram Processed 466,000,000 records. Elapsed time: 00:13:00s. Time for last 1,000,000: 1s. Last read position: chr19:54,970,003 INFO 2026-06-03 20:05:44 SinglePassSamProgram Processed 467,000,000 records. Elapsed time: 00:13:01s. Time for last 1,000,000: 1s. Last read position: chr19:55,616,583 INFO 2026-06-03 20:05:45 SinglePassSamProgram Processed 468,000,000 records. Elapsed time: 00:13:03s. Time for last 1,000,000: 1s. Last read position: chr19:57,859,408 INFO 2026-06-03 20:05:47 SinglePassSamProgram Processed 469,000,000 records. Elapsed time: 00:13:05s. Time for last 1,000,000: 1s. Last read position: chr20:396,260 INFO 2026-06-03 20:05:49 SinglePassSamProgram Processed 470,000,000 records. Elapsed time: 00:13:07s. Time for last 1,000,000: 1s. Last read position: chr20:3,471,055 INFO 2026-06-03 20:05:51 SinglePassSamProgram Processed 471,000,000 records. Elapsed time: 00:13:08s. Time for last 1,000,000: 1s. Last read position: chr20:17,614,769 INFO 2026-06-03 20:05:52 SinglePassSamProgram Processed 472,000,000 records. Elapsed time: 00:13:10s. Time for last 1,000,000: 1s. Last read position: chr20:25,217,564 INFO 2026-06-03 20:05:54 SinglePassSamProgram Processed 473,000,000 records. Elapsed time: 00:13:12s. Time for last 1,000,000: 1s. Last read position: chr20:32,762,665 INFO 2026-06-03 20:05:56 SinglePassSamProgram Processed 474,000,000 records. Elapsed time: 00:13:14s. Time for last 1,000,000: 1s. Last read position: chr20:35,280,684 INFO 2026-06-03 20:05:57 SinglePassSamProgram Processed 475,000,000 records. Elapsed time: 00:13:15s. Time for last 1,000,000: 1s. Last read position: chr20:36,500,346 INFO 2026-06-03 20:05:59 SinglePassSamProgram Processed 476,000,000 records. Elapsed time: 00:13:17s. Time for last 1,000,000: 1s. Last read position: chr20:41,165,014 INFO 2026-06-03 20:06:01 SinglePassSamProgram Processed 477,000,000 records. Elapsed time: 00:13:19s. Time for last 1,000,000: 2s. Last read position: chr20:45,327,369 INFO 2026-06-03 20:06:03 SinglePassSamProgram Processed 478,000,000 records. Elapsed time: 00:13:21s. Time for last 1,000,000: 2s. Last read position: chr20:48,745,069 INFO 2026-06-03 20:06:05 SinglePassSamProgram Processed 479,000,000 records. Elapsed time: 00:13:22s. Time for last 1,000,000: 1s. Last read position: chr20:53,582,473 INFO 2026-06-03 20:06:06 SinglePassSamProgram Processed 480,000,000 records. Elapsed time: 00:13:24s. Time for last 1,000,000: 1s. Last read position: chr20:62,139,895 INFO 2026-06-03 20:06:08 SinglePassSamProgram Processed 481,000,000 records. Elapsed time: 00:13:26s. Time for last 1,000,000: 1s. Last read position: chr20:62,813,121 INFO 2026-06-03 20:06:09 SinglePassSamProgram Processed 482,000,000 records. Elapsed time: 00:13:27s. Time for last 1,000,000: 1s. Last read position: chr20:63,708,779 INFO 2026-06-03 20:06:11 SinglePassSamProgram Processed 483,000,000 records. Elapsed time: 00:13:29s. Time for last 1,000,000: 1s. Last read position: chr21:8,213,351 INFO 2026-06-03 20:06:12 SinglePassSamProgram Processed 484,000,000 records. Elapsed time: 00:13:30s. Time for last 1,000,000: 1s. Last read position: chr21:8,214,749 INFO 2026-06-03 20:06:14 SinglePassSamProgram Processed 485,000,000 records. Elapsed time: 00:13:32s. Time for last 1,000,000: 1s. Last read position: chr21:8,258,905 INFO 2026-06-03 20:06:15 SinglePassSamProgram Processed 486,000,000 records. Elapsed time: 00:13:33s. Time for last 1,000,000: 1s. Last read position: chr21:8,260,219 INFO 2026-06-03 20:06:16 SinglePassSamProgram Processed 487,000,000 records. Elapsed time: 00:13:34s. Time for last 1,000,000: 1s. Last read position: chr21:8,397,783 INFO 2026-06-03 20:06:17 SinglePassSamProgram Processed 488,000,000 records. Elapsed time: 00:13:35s. Time for last 1,000,000: 1s. Last read position: chr21:8,441,932 INFO 2026-06-03 20:06:18 SinglePassSamProgram Processed 489,000,000 records. Elapsed time: 00:13:36s. Time for last 1,000,000: 1s. Last read position: chr21:8,442,014 INFO 2026-06-03 20:06:20 SinglePassSamProgram Processed 490,000,000 records. Elapsed time: 00:13:38s. Time for last 1,000,000: 1s. Last read position: chr21:14,966,961 INFO 2026-06-03 20:06:22 SinglePassSamProgram Processed 491,000,000 records. Elapsed time: 00:13:40s. Time for last 1,000,000: 1s. Last read position: chr21:32,762,122 INFO 2026-06-03 20:06:24 SinglePassSamProgram Processed 492,000,000 records. Elapsed time: 00:13:42s. Time for last 1,000,000: 1s. Last read position: chr21:34,792,524 INFO 2026-06-03 20:06:26 SinglePassSamProgram Processed 493,000,000 records. Elapsed time: 00:13:43s. Time for last 1,000,000: 1s. Last read position: chr21:41,245,967 INFO 2026-06-03 20:06:27 SinglePassSamProgram Processed 494,000,000 records. Elapsed time: 00:13:45s. Time for last 1,000,000: 1s. Last read position: chr21:42,733,413 INFO 2026-06-03 20:06:28 SinglePassSamProgram Processed 495,000,000 records. Elapsed time: 00:13:46s. Time for last 1,000,000: 1s. Last read position: chr21:44,326,726 INFO 2026-06-03 20:06:30 SinglePassSamProgram Processed 496,000,000 records. Elapsed time: 00:13:48s. Time for last 1,000,000: 1s. Last read position: chr21:46,391,308 INFO 2026-06-03 20:06:32 SinglePassSamProgram Processed 497,000,000 records. Elapsed time: 00:13:50s. Time for last 1,000,000: 1s. Last read position: chr22:19,963,624 INFO 2026-06-03 20:06:33 SinglePassSamProgram Processed 498,000,000 records. Elapsed time: 00:13:51s. Time for last 1,000,000: 1s. Last read position: chr22:21,970,325 INFO 2026-06-03 20:06:34 SinglePassSamProgram Processed 499,000,000 records. Elapsed time: 00:13:52s. Time for last 1,000,000: 1s. Last read position: chr22:25,039,889 INFO 2026-06-03 20:06:36 SinglePassSamProgram Processed 500,000,000 records. Elapsed time: 00:13:54s. Time for last 1,000,000: 1s. Last read position: chr22:29,299,622 INFO 2026-06-03 20:06:38 SinglePassSamProgram Processed 501,000,000 records. Elapsed time: 00:13:55s. Time for last 1,000,000: 1s. Last read position: chr22:31,125,842 INFO 2026-06-03 20:06:39 SinglePassSamProgram Processed 502,000,000 records. Elapsed time: 00:13:57s. Time for last 1,000,000: 1s. Last read position: chr22:36,288,309 INFO 2026-06-03 20:06:41 SinglePassSamProgram Processed 503,000,000 records. Elapsed time: 00:13:59s. Time for last 1,000,000: 1s. Last read position: chr22:37,724,775 INFO 2026-06-03 20:06:43 SinglePassSamProgram Processed 504,000,000 records. Elapsed time: 00:14:01s. Time for last 1,000,000: 2s. Last read position: chr22:38,699,911 INFO 2026-06-03 20:06:45 SinglePassSamProgram Processed 505,000,000 records. Elapsed time: 00:14:03s. Time for last 1,000,000: 1s. Last read position: chr22:40,857,113 INFO 2026-06-03 20:06:46 SinglePassSamProgram Processed 506,000,000 records. Elapsed time: 00:14:04s. Time for last 1,000,000: 1s. Last read position: chr22:42,214,151 INFO 2026-06-03 20:06:47 SinglePassSamProgram Processed 507,000,000 records. Elapsed time: 00:14:05s. Time for last 1,000,000: 1s. Last read position: chr22:45,550,510 INFO 2026-06-03 20:06:49 SinglePassSamProgram Processed 508,000,000 records. Elapsed time: 00:14:07s. Time for last 1,000,000: 1s. Last read position: chr22:50,278,616 INFO 2026-06-03 20:06:51 SinglePassSamProgram Processed 509,000,000 records. Elapsed time: 00:14:09s. Time for last 1,000,000: 2s. Last read position: chr22:50,731,054 INFO 2026-06-03 20:06:53 SinglePassSamProgram Processed 510,000,000 records. Elapsed time: 00:14:11s. Time for last 1,000,000: 2s. Last read position: chrX:8,466,267 INFO 2026-06-03 20:06:55 SinglePassSamProgram Processed 511,000,000 records. Elapsed time: 00:14:12s. Time for last 1,000,000: 1s. Last read position: chrX:24,055,006 INFO 2026-06-03 20:06:56 SinglePassSamProgram Processed 512,000,000 records. Elapsed time: 00:14:14s. Time for last 1,000,000: 1s. Last read position: chrX:43,711,917 INFO 2026-06-03 20:06:58 SinglePassSamProgram Processed 513,000,000 records. Elapsed time: 00:14:16s. Time for last 1,000,000: 1s. Last read position: chrX:48,698,939 INFO 2026-06-03 20:06:59 SinglePassSamProgram Processed 514,000,000 records. Elapsed time: 00:14:17s. Time for last 1,000,000: 1s. Last read position: chrX:52,192,102 INFO 2026-06-03 20:07:01 SinglePassSamProgram Processed 515,000,000 records. Elapsed time: 00:14:18s. Time for last 1,000,000: 1s. Last read position: chrX:53,580,985 INFO 2026-06-03 20:07:03 SinglePassSamProgram Processed 516,000,000 records. Elapsed time: 00:14:20s. Time for last 1,000,000: 1s. Last read position: chrX:69,616,619 INFO 2026-06-03 20:07:04 SinglePassSamProgram Processed 517,000,000 records. Elapsed time: 00:14:22s. Time for last 1,000,000: 1s. Last read position: chrX:74,592,741 INFO 2026-06-03 20:07:05 SinglePassSamProgram Processed 518,000,000 records. Elapsed time: 00:14:23s. Time for last 1,000,000: 1s. Last read position: chrX:101,625,207 INFO 2026-06-03 20:07:07 SinglePassSamProgram Processed 519,000,000 records. Elapsed time: 00:14:25s. Time for last 1,000,000: 1s. Last read position: chrX:119,930,106 INFO 2026-06-03 20:07:09 SinglePassSamProgram Processed 520,000,000 records. Elapsed time: 00:14:26s. Time for last 1,000,000: 1s. Last read position: chrX:147,921,969 INFO 2026-06-03 20:07:10 SinglePassSamProgram Processed 521,000,000 records. Elapsed time: 00:14:28s. Time for last 1,000,000: 1s. Last read position: chrX:153,956,719 INFO 2026-06-03 20:07:12 SinglePassSamProgram Processed 522,000,000 records. Elapsed time: 00:14:30s. Time for last 1,000,000: 1s. Last read position: chrX:155,051,702 INFO 2026-06-03 20:07:14 SinglePassSamProgram Processed 523,000,000 records. Elapsed time: 00:14:32s. Time for last 1,000,000: 1s. Last read position: GL000220.1:114,151 INFO 2026-06-03 20:07:15 SinglePassSamProgram Processed 524,000,000 records. Elapsed time: 00:14:33s. Time for last 1,000,000: 1s. Last read position: GL000220.1:115,551 INFO 2026-06-03 20:07:17 SinglePassSamProgram Processed 525,000,000 records. Elapsed time: 00:14:35s. Time for last 1,000,000: 1s. Last read position: GL000220.1:158,121 INFO 2026-06-03 20:07:18 SinglePassSamProgram Processed 526,000,000 records. Elapsed time: 00:14:36s. Time for last 1,000,000: 1s. Last read position: GL000220.1:159,460 INFO 2026-06-03 20:07:19 SinglePassSamProgram Processed 527,000,000 records. Elapsed time: 00:14:37s. Time for last 1,000,000: 1s. Last read position: KI270733.1:129,737 INFO 2026-06-03 20:07:20 SinglePassSamProgram Processed 528,000,000 records. Elapsed time: 00:14:38s. Time for last 1,000,000: 1s. Last read position: KI270733.1:131,041 INFO 2026-06-03 20:07:22 SinglePassSamProgram Processed 529,000,000 records. Elapsed time: 00:14:40s. Time for last 1,000,000: 1s. Last read position: KI270733.1:168,888 INFO 2026-06-03 20:07:24 SinglePassSamProgram Processed 530,000,000 records. Elapsed time: 00:14:42s. Time for last 1,000,000: 1s. Last read position: KI270733.1:176,099 INFO 2026-06-03 20:07:26 SinglePassSamProgram Processed 531,000,000 records. Elapsed time: 00:14:43s. Time for last 1,000,000: 1s. Last read position: KI270733.1:178,721 INFO 2026-06-03 20:07:26 RExecutor Executing R script via command: Rscript /tmp/script17374853999715746107.R /tmp/nxf.XXXXzoYWYV/aih-tih-sc-3abdf4-R1_A23YTGFLT4_1_collectinsertsize.txt /tmp/nxf.XXXXzoYWYV/aih-tih-sc-3abdf4-R1_A23YTGFLT4_1_collectinsertsize.pdf aih-tih-sc-3abdf4-R1_A23YTGFLT4_1.Aligned.sortedByCoord.out.bam ERROR 2026-06-03 20:07:26 ProcessExecutor /bin/sh: warning: setlocale: LC_ALL: cannot change locale (en_US.UTF-8) ERROR 2026-06-03 20:07:26 ProcessExecutor sh: warning: setlocale: LC_ALL: cannot change locale (en_US.UTF-8) ERROR 2026-06-03 20:07:27 ProcessExecutor sh: warning: setlocale: LC_ALL: cannot change locale (en_US.UTF-8) ERROR 2026-06-03 20:07:27 ProcessExecutor During startup - Warning messages: ERROR 2026-06-03 20:07:27 ProcessExecutor 1: Setting LC_CTYPE failed, using "C" ERROR 2026-06-03 20:07:27 ProcessExecutor 2: Setting LC_COLLATE failed, using "C" ERROR 2026-06-03 20:07:27 ProcessExecutor 3: Setting LC_TIME failed, using "C" ERROR 2026-06-03 20:07:27 ProcessExecutor 4: Setting LC_MESSAGES failed, using "C" ERROR 2026-06-03 20:07:27 ProcessExecutor 5: Setting LC_MONETARY failed, using "C" ERROR 2026-06-03 20:07:27 ProcessExecutor 6: Setting LC_PAPER failed, using "C" ERROR 2026-06-03 20:07:27 ProcessExecutor 7: Setting LC_MEASUREMENT failed, using "C" INFO 2026-06-03 20:07:27 ProcessExecutor null device INFO 2026-06-03 20:07:27 ProcessExecutor 1 ERROR 2026-06-03 20:07:27 ProcessExecutor sh: warning: setlocale: LC_ALL: cannot change locale (en_US.UTF-8) [Wed Jun 03 20:07:27 GMT 2026] picard.analysis.CollectInsertSizeMetrics done. Elapsed time: 14.75 minutes. Runtime.totalMemory()=281018368