Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/a4/70ea73390d494f815dab3a1fc5117d/aih-tih-sc-3abdf4-R1_A23YTGFLT4_1.Aligned.sortedByCoord.out.bam
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/5a/c87ba11d273b092e82388646f00639/.command.sh
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/5a/c87ba11d273b092e82388646f00639/.command.run
==> STAGING COMPLETE (3 inputs)
/usr/local/bin/picard: line 5: warning: setlocale: LC_ALL: cannot change locale (en_US.UTF-8): No such file or directory
INFO 2026-06-03 19:52:41 RExecutor Executing R script via command: Rscript /tmp/script14223231553465798158.R
ERROR 2026-06-03 19:52:41 ProcessExecutor /bin/sh: warning: setlocale: LC_ALL: cannot change locale (en_US.UTF-8)
ERROR 2026-06-03 19:52:41 ProcessExecutor sh: warning: setlocale: LC_ALL: cannot change locale (en_US.UTF-8)
ERROR 2026-06-03 19:52:41 ProcessExecutor sh: warning: setlocale: LC_ALL: cannot change locale (en_US.UTF-8)
ERROR 2026-06-03 19:52:42 ProcessExecutor During startup - Warning messages:
ERROR 2026-06-03 19:52:42 ProcessExecutor 1: Setting LC_CTYPE failed, using "C"
ERROR 2026-06-03 19:52:42 ProcessExecutor 2: Setting LC_COLLATE failed, using "C"
ERROR 2026-06-03 19:52:42 ProcessExecutor 3: Setting LC_TIME failed, using "C"
ERROR 2026-06-03 19:52:42 ProcessExecutor 4: Setting LC_MESSAGES failed, using "C"
ERROR 2026-06-03 19:52:42 ProcessExecutor 5: Setting LC_MONETARY failed, using "C"
ERROR 2026-06-03 19:52:42 ProcessExecutor 6: Setting LC_PAPER failed, using "C"
ERROR 2026-06-03 19:52:42 ProcessExecutor 7: Setting LC_MEASUREMENT failed, using "C"
INFO 2026-06-03 19:52:42 ProcessExecutor [1] "Checking if R is installed"
ERROR 2026-06-03 19:52:42 ProcessExecutor sh: warning: setlocale: LC_ALL: cannot change locale (en_US.UTF-8)
Jun 03, 2026 7:52:42 PM com.intel.gkl.NativeLibraryLoader load
INFO: Loading libgkl_compression.so from jar:file:/usr/local/share/picard-3.1.0-0/picard.jar!/com/intel/gkl/native/libgkl_compression.so
[Wed Jun 03 19:52:42 GMT 2026] CollectInsertSizeMetrics --Histogram_FILE aih-tih-sc-3abdf4-R1_A23YTGFLT4_1_collectinsertsize.pdf --INPUT aih-tih-sc-3abdf4-R1_A23YTGFLT4_1.Aligned.sortedByCoord.out.bam --OUTPUT aih-tih-sc-3abdf4-R1_A23YTGFLT4_1_collectinsertsize.txt --DEVIATIONS 10.0 --MINIMUM_PCT 0.05 --METRIC_ACCUMULATION_LEVEL ALL_READS --INCLUDE_DUPLICATES false --ASSUME_SORTED true --STOP_AFTER 0 --VERBOSITY INFO --QUIET false --VALIDATION_STRINGENCY STRICT --COMPRESSION_LEVEL 5 --MAX_RECORDS_IN_RAM 500000 --CREATE_INDEX false --CREATE_MD5_FILE false --help false --version false --showHidden false --USE_JDK_DEFLATER false --USE_JDK_INFLATER false
[Wed Jun 03 19:52:42 GMT 2026] Executing as ?@nf-5ac87ba11d273b092e82388646f00639-b8717-6869z on Linux 6.12.88 amd64; OpenJDK 64-Bit Server VM 20-internal-adhoc..src; Deflater: Intel; Inflater: Intel; Provider GCS is available; Picard version: Version:3.1.0
INFO 2026-06-03 19:52:44 SinglePassSamProgram Processed 1,000,000 records. Elapsed time: 00:00:01s. Time for last 1,000,000: 1s. Last read position: chr1:1,051,635
INFO 2026-06-03 19:52:45 SinglePassSamProgram Processed 2,000,000 records. Elapsed time: 00:00:03s. Time for last 1,000,000: 1s. Last read position: chr1:1,517,383
INFO 2026-06-03 19:52:47 SinglePassSamProgram Processed 3,000,000 records. Elapsed time: 00:00:05s. Time for last 1,000,000: 1s. Last read position: chr1:3,785,111
INFO 2026-06-03 19:52:49 SinglePassSamProgram Processed 4,000,000 records. Elapsed time: 00:00:06s. Time for last 1,000,000: 1s. Last read position: chr1:8,362,688
INFO 2026-06-03 19:52:50 SinglePassSamProgram Processed 5,000,000 records. Elapsed time: 00:00:08s. Time for last 1,000,000: 1s. Last read position: chr1:11,213,435
INFO 2026-06-03 19:52:52 SinglePassSamProgram Processed 6,000,000 records. Elapsed time: 00:00:10s. Time for last 1,000,000: 1s. Last read position: chr1:15,746,871
INFO 2026-06-03 19:52:54 SinglePassSamProgram Processed 7,000,000 records. Elapsed time: 00:00:11s. Time for last 1,000,000: 1s. Last read position: chr1:16,970,644
INFO 2026-06-03 19:52:55 SinglePassSamProgram Processed 8,000,000 records. Elapsed time: 00:00:13s. Time for last 1,000,000: 1s. Last read position: chr1:19,419,659
INFO 2026-06-03 19:52:57 SinglePassSamProgram Processed 9,000,000 records. Elapsed time: 00:00:15s. Time for last 1,000,000: 1s. Last read position: chr1:21,855,319
INFO 2026-06-03 19:52:58 SinglePassSamProgram Processed 10,000,000 records. Elapsed time: 00:00:16s. Time for last 1,000,000: 1s. Last read position: chr1:23,795,978
INFO 2026-06-03 19:53:00 SinglePassSamProgram Processed 11,000,000 records. Elapsed time: 00:00:18s. Time for last 1,000,000: 1s. Last read position: chr1:26,170,104
INFO 2026-06-03 19:53:02 SinglePassSamProgram Processed 12,000,000 records. Elapsed time: 00:00:20s. Time for last 1,000,000: 1s. Last read position: chr1:27,101,804
INFO 2026-06-03 19:53:04 SinglePassSamProgram Processed 13,000,000 records. Elapsed time: 00:00:21s. Time for last 1,000,000: 1s. Last read position: chr1:29,159,461
INFO 2026-06-03 19:53:05 SinglePassSamProgram Processed 14,000,000 records. Elapsed time: 00:00:23s. Time for last 1,000,000: 1s. Last read position: chr1:31,908,907
INFO 2026-06-03 19:53:07 SinglePassSamProgram Processed 15,000,000 records. Elapsed time: 00:00:25s. Time for last 1,000,000: 1s. Last read position: chr1:32,771,175
INFO 2026-06-03 19:53:08 SinglePassSamProgram Processed 16,000,000 records. Elapsed time: 00:00:26s. Time for last 1,000,000: 1s. Last read position: chr1:35,392,221
INFO 2026-06-03 19:53:10 SinglePassSamProgram Processed 17,000,000 records. Elapsed time: 00:00:28s. Time for last 1,000,000: 1s. Last read position: chr1:39,334,707
INFO 2026-06-03 19:53:12 SinglePassSamProgram Processed 18,000,000 records. Elapsed time: 00:00:30s. Time for last 1,000,000: 1s. Last read position: chr1:41,007,369
INFO 2026-06-03 19:53:14 SinglePassSamProgram Processed 19,000,000 records. Elapsed time: 00:00:31s. Time for last 1,000,000: 1s. Last read position: chr1:43,591,272
INFO 2026-06-03 19:53:15 SinglePassSamProgram Processed 20,000,000 records. Elapsed time: 00:00:33s. Time for last 1,000,000: 1s. Last read position: chr1:45,013,186
INFO 2026-06-03 19:53:17 SinglePassSamProgram Processed 21,000,000 records. Elapsed time: 00:00:35s. Time for last 1,000,000: 1s. Last read position: chr1:46,869,352
INFO 2026-06-03 19:53:19 SinglePassSamProgram Processed 22,000,000 records. Elapsed time: 00:00:37s. Time for last 1,000,000: 1s. Last read position: chr1:54,609,374
INFO 2026-06-03 19:53:20 SinglePassSamProgram Processed 23,000,000 records. Elapsed time: 00:00:38s. Time for last 1,000,000: 1s. Last read position: chr1:67,424,917
INFO 2026-06-03 19:53:22 SinglePassSamProgram Processed 24,000,000 records. Elapsed time: 00:00:40s. Time for last 1,000,000: 1s. Last read position: chr1:90,007,460
INFO 2026-06-03 19:53:23 SinglePassSamProgram Processed 25,000,000 records. Elapsed time: 00:00:41s. Time for last 1,000,000: 1s. Last read position: chr1:108,383,431
INFO 2026-06-03 19:53:25 SinglePassSamProgram Processed 26,000,000 records. Elapsed time: 00:00:43s. Time for last 1,000,000: 1s. Last read position: chr1:111,765,759
INFO 2026-06-03 19:53:27 SinglePassSamProgram Processed 27,000,000 records. Elapsed time: 00:00:45s. Time for last 1,000,000: 1s. Last read position: chr1:116,389,437
INFO 2026-06-03 19:53:29 SinglePassSamProgram Processed 28,000,000 records. Elapsed time: 00:00:47s. Time for last 1,000,000: 1s. Last read position: chr1:120,005,547
INFO 2026-06-03 19:53:30 SinglePassSamProgram Processed 29,000,000 records. Elapsed time: 00:00:48s. Time for last 1,000,000: 1s. Last read position: chr1:146,077,621
INFO 2026-06-03 19:53:32 SinglePassSamProgram Processed 30,000,000 records. Elapsed time: 00:00:50s. Time for last 1,000,000: 1s. Last read position: chr1:148,120,576
INFO 2026-06-03 19:53:34 SinglePassSamProgram Processed 31,000,000 records. Elapsed time: 00:00:52s. Time for last 1,000,000: 2s. Last read position: chr1:149,479,068
INFO 2026-06-03 19:53:36 SinglePassSamProgram Processed 32,000,000 records. Elapsed time: 00:00:53s. Time for last 1,000,000: 1s. Last read position: chr1:149,851,303
INFO 2026-06-03 19:53:37 SinglePassSamProgram Processed 33,000,000 records. Elapsed time: 00:00:55s. Time for last 1,000,000: 1s. Last read position: chr1:149,943,981
INFO 2026-06-03 19:53:39 SinglePassSamProgram Processed 34,000,000 records. Elapsed time: 00:00:57s. Time for last 1,000,000: 1s. Last read position: chr1:150,508,237
INFO 2026-06-03 19:53:41 SinglePassSamProgram Processed 35,000,000 records. Elapsed time: 00:00:59s. Time for last 1,000,000: 1s. Last read position: chr1:151,002,243
INFO 2026-06-03 19:53:43 SinglePassSamProgram Processed 36,000,000 records. Elapsed time: 00:01:01s. Time for last 1,000,000: 1s. Last read position: chr1:151,316,384
INFO 2026-06-03 19:53:45 SinglePassSamProgram Processed 37,000,000 records. Elapsed time: 00:01:02s. Time for last 1,000,000: 1s. Last read position: chr1:151,693,610
INFO 2026-06-03 19:53:46 SinglePassSamProgram Processed 38,000,000 records. Elapsed time: 00:01:04s. Time for last 1,000,000: 1s. Last read position: chr1:153,991,587
INFO 2026-06-03 19:53:48 SinglePassSamProgram Processed 39,000,000 records. Elapsed time: 00:01:05s. Time for last 1,000,000: 1s. Last read position: chr1:154,601,241
INFO 2026-06-03 19:53:50 SinglePassSamProgram Processed 40,000,000 records. Elapsed time: 00:01:07s. Time for last 1,000,000: 1s. Last read position: chr1:155,214,379
INFO 2026-06-03 19:53:51 SinglePassSamProgram Processed 41,000,000 records. Elapsed time: 00:01:09s. Time for last 1,000,000: 1s. Last read position: chr1:156,018,281
INFO 2026-06-03 19:53:53 SinglePassSamProgram Processed 42,000,000 records. Elapsed time: 00:01:10s. Time for last 1,000,000: 1s. Last read position: chr1:156,247,508
INFO 2026-06-03 19:53:54 SinglePassSamProgram Processed 43,000,000 records. Elapsed time: 00:01:12s. Time for last 1,000,000: 1s. Last read position: chr1:158,094,741
INFO 2026-06-03 19:53:56 SinglePassSamProgram Processed 44,000,000 records. Elapsed time: 00:01:14s. Time for last 1,000,000: 1s. Last read position: chr1:160,240,036
INFO 2026-06-03 19:53:57 SinglePassSamProgram Processed 45,000,000 records. Elapsed time: 00:01:15s. Time for last 1,000,000: 1s. Last read position: chr1:161,051,400
INFO 2026-06-03 19:53:59 SinglePassSamProgram Processed 46,000,000 records. Elapsed time: 00:01:16s. Time for last 1,000,000: 1s. Last read position: chr1:161,283,698
INFO 2026-06-03 19:54:00 SinglePassSamProgram Processed 47,000,000 records. Elapsed time: 00:01:18s. Time for last 1,000,000: 1s. Last read position: chr1:166,849,962
INFO 2026-06-03 19:54:02 SinglePassSamProgram Processed 48,000,000 records. Elapsed time: 00:01:20s. Time for last 1,000,000: 1s. Last read position: chr1:169,541,201
INFO 2026-06-03 19:54:03 SinglePassSamProgram Processed 49,000,000 records. Elapsed time: 00:01:21s. Time for last 1,000,000: 1s. Last read position: chr1:171,577,572
INFO 2026-06-03 19:54:05 SinglePassSamProgram Processed 50,000,000 records. Elapsed time: 00:01:23s. Time for last 1,000,000: 1s. Last read position: chr1:179,112,319
INFO 2026-06-03 19:54:07 SinglePassSamProgram Processed 51,000,000 records. Elapsed time: 00:01:25s. Time for last 1,000,000: 1s. Last read position: chr1:183,284,739
INFO 2026-06-03 19:54:09 SinglePassSamProgram Processed 52,000,000 records. Elapsed time: 00:01:26s. Time for last 1,000,000: 1s. Last read position: chr1:186,361,622
INFO 2026-06-03 19:54:11 SinglePassSamProgram Processed 53,000,000 records. Elapsed time: 00:01:28s. Time for last 1,000,000: 1s. Last read position: chr1:202,729,843
INFO 2026-06-03 19:54:12 SinglePassSamProgram Processed 54,000,000 records. Elapsed time: 00:01:30s. Time for last 1,000,000: 1s. Last read position: chr1:205,845,292
INFO 2026-06-03 19:54:14 SinglePassSamProgram Processed 55,000,000 records. Elapsed time: 00:01:32s. Time for last 1,000,000: 1s. Last read position: chr1:219,969,078
INFO 2026-06-03 19:54:16 SinglePassSamProgram Processed 56,000,000 records. Elapsed time: 00:01:34s. Time for last 1,000,000: 1s. Last read position: chr1:226,065,750
INFO 2026-06-03 19:54:18 SinglePassSamProgram Processed 57,000,000 records. Elapsed time: 00:01:35s. Time for last 1,000,000: 1s. Last read position: chr1:229,594,942
INFO 2026-06-03 19:54:19 SinglePassSamProgram Processed 58,000,000 records. Elapsed time: 00:01:37s. Time for last 1,000,000: 1s. Last read position: chr1:244,409,587
INFO 2026-06-03 19:54:21 SinglePassSamProgram Processed 59,000,000 records. Elapsed time: 00:01:39s. Time for last 1,000,000: 1s. Last read position: chr2:3,498,922
INFO 2026-06-03 19:54:23 SinglePassSamProgram Processed 60,000,000 records. Elapsed time: 00:01:41s. Time for last 1,000,000: 1s. Last read position: chr2:15,218,899
INFO 2026-06-03 19:54:25 SinglePassSamProgram Processed 61,000,000 records. Elapsed time: 00:01:42s. Time for last 1,000,000: 1s. Last read position: chr2:20,204,041
INFO 2026-06-03 19:54:27 SinglePassSamProgram Processed 62,000,000 records. Elapsed time: 00:01:44s. Time for last 1,000,000: 1s. Last read position: chr2:24,710,967
INFO 2026-06-03 19:54:29 SinglePassSamProgram Processed 63,000,000 records. Elapsed time: 00:01:46s. Time for last 1,000,000: 1s. Last read position: chr2:27,217,460
INFO 2026-06-03 19:54:30 SinglePassSamProgram Processed 64,000,000 records. Elapsed time: 00:01:48s. Time for last 1,000,000: 1s. Last read position: chr2:28,776,868
INFO 2026-06-03 19:54:31 SinglePassSamProgram Processed 65,000,000 records. Elapsed time: 00:01:49s. Time for last 1,000,000: 1s. Last read position: chr2:32,916,263
INFO 2026-06-03 19:54:33 SinglePassSamProgram Processed 66,000,000 records. Elapsed time: 00:01:51s. Time for last 1,000,000: 2s. Last read position: chr2:32,916,402
INFO 2026-06-03 19:54:35 SinglePassSamProgram Processed 67,000,000 records. Elapsed time: 00:01:53s. Time for last 1,000,000: 1s. Last read position: chr2:32,916,446
INFO 2026-06-03 19:54:36 SinglePassSamProgram Processed 68,000,000 records. Elapsed time: 00:01:54s. Time for last 1,000,000: 1s. Last read position: chr2:42,245,570
INFO 2026-06-03 19:54:38 SinglePassSamProgram Processed 69,000,000 records. Elapsed time: 00:01:56s. Time for last 1,000,000: 1s. Last read position: chr2:45,976,520
INFO 2026-06-03 19:54:40 SinglePassSamProgram Processed 70,000,000 records. Elapsed time: 00:01:57s. Time for last 1,000,000: 1s. Last read position: chr2:54,649,132
INFO 2026-06-03 19:54:41 SinglePassSamProgram Processed 71,000,000 records. Elapsed time: 00:01:59s. Time for last 1,000,000: 1s. Last read position: chr2:61,348,471
INFO 2026-06-03 19:54:42 SinglePassSamProgram Processed 72,000,000 records. Elapsed time: 00:02:00s. Time for last 1,000,000: 1s. Last read position: chr2:69,350,129
INFO 2026-06-03 19:54:44 SinglePassSamProgram Processed 73,000,000 records. Elapsed time: 00:02:01s. Time for last 1,000,000: 1s. Last read position: chr2:71,077,626
INFO 2026-06-03 19:54:45 SinglePassSamProgram Processed 74,000,000 records. Elapsed time: 00:02:03s. Time for last 1,000,000: 1s. Last read position: chr2:74,047,130
INFO 2026-06-03 19:54:47 SinglePassSamProgram Processed 75,000,000 records. Elapsed time: 00:02:04s. Time for last 1,000,000: 1s. Last read position: chr2:74,475,290
INFO 2026-06-03 19:54:48 SinglePassSamProgram Processed 76,000,000 records. Elapsed time: 00:02:06s. Time for last 1,000,000: 1s. Last read position: chr2:85,611,565
INFO 2026-06-03 19:54:50 SinglePassSamProgram Processed 77,000,000 records. Elapsed time: 00:02:08s. Time for last 1,000,000: 1s. Last read position: chr2:95,958,591
INFO 2026-06-03 19:54:52 SinglePassSamProgram Processed 78,000,000 records. Elapsed time: 00:02:10s. Time for last 1,000,000: 1s. Last read position: chr2:98,555,656
INFO 2026-06-03 19:54:54 SinglePassSamProgram Processed 79,000,000 records. Elapsed time: 00:02:12s. Time for last 1,000,000: 2s. Last read position: chr2:106,423,460
INFO 2026-06-03 19:54:55 SinglePassSamProgram Processed 80,000,000 records. Elapsed time: 00:02:13s. Time for last 1,000,000: 1s. Last read position: chr2:110,798,658
INFO 2026-06-03 19:54:57 SinglePassSamProgram Processed 81,000,000 records. Elapsed time: 00:02:15s. Time for last 1,000,000: 1s. Last read position: chr2:119,368,296
INFO 2026-06-03 19:54:59 SinglePassSamProgram Processed 82,000,000 records. Elapsed time: 00:02:16s. Time for last 1,000,000: 1s. Last read position: chr2:131,520,133
INFO 2026-06-03 19:55:00 SinglePassSamProgram Processed 83,000,000 records. Elapsed time: 00:02:18s. Time for last 1,000,000: 1s. Last read position: chr2:159,747,851
INFO 2026-06-03 19:55:02 SinglePassSamProgram Processed 84,000,000 records. Elapsed time: 00:02:19s. Time for last 1,000,000: 1s. Last read position: chr2:177,232,392
INFO 2026-06-03 19:55:03 SinglePassSamProgram Processed 85,000,000 records. Elapsed time: 00:02:21s. Time for last 1,000,000: 1s. Last read position: chr2:197,420,539
INFO 2026-06-03 19:55:04 SinglePassSamProgram Processed 86,000,000 records. Elapsed time: 00:02:22s. Time for last 1,000,000: 1s. Last read position: chr2:207,768,561
INFO 2026-06-03 19:55:05 SinglePassSamProgram Processed 87,000,000 records. Elapsed time: 00:02:23s. Time for last 1,000,000: 1s. Last read position: chr2:216,694,661
INFO 2026-06-03 19:55:07 SinglePassSamProgram Processed 88,000,000 records. Elapsed time: 00:02:25s. Time for last 1,000,000: 1s. Last read position: chr2:222,521,802
INFO 2026-06-03 19:55:08 SinglePassSamProgram Processed 89,000,000 records. Elapsed time: 00:02:26s. Time for last 1,000,000: 1s. Last read position: chr2:233,468,543
INFO 2026-06-03 19:55:10 SinglePassSamProgram Processed 90,000,000 records. Elapsed time: 00:02:28s. Time for last 1,000,000: 2s. Last read position: chr2:241,229,554
INFO 2026-06-03 19:55:12 SinglePassSamProgram Processed 91,000,000 records. Elapsed time: 00:02:30s. Time for last 1,000,000: 1s. Last read position: chr3:9,743,829
INFO 2026-06-03 19:55:14 SinglePassSamProgram Processed 92,000,000 records. Elapsed time: 00:02:31s. Time for last 1,000,000: 1s. Last read position: chr3:12,416,807
INFO 2026-06-03 19:55:16 SinglePassSamProgram Processed 93,000,000 records. Elapsed time: 00:02:33s. Time for last 1,000,000: 1s. Last read position: chr3:15,023,311
INFO 2026-06-03 19:55:18 SinglePassSamProgram Processed 94,000,000 records. Elapsed time: 00:02:35s. Time for last 1,000,000: 2s. Last read position: chr3:25,615,562
INFO 2026-06-03 19:55:19 SinglePassSamProgram Processed 95,000,000 records. Elapsed time: 00:02:37s. Time for last 1,000,000: 1s. Last read position: chr3:32,570,885
INFO 2026-06-03 19:55:20 SinglePassSamProgram Processed 96,000,000 records. Elapsed time: 00:02:38s. Time for last 1,000,000: 1s. Last read position: chr3:38,140,509
INFO 2026-06-03 19:55:21 SinglePassSamProgram Processed 97,000,000 records. Elapsed time: 00:02:39s. Time for last 1,000,000: 1s. Last read position: chr3:42,160,453
INFO 2026-06-03 19:55:23 SinglePassSamProgram Processed 98,000,000 records. Elapsed time: 00:02:41s. Time for last 1,000,000: 1s. Last read position: chr3:44,642,933
INFO 2026-06-03 19:55:25 SinglePassSamProgram Processed 99,000,000 records. Elapsed time: 00:02:43s. Time for last 1,000,000: 1s. Last read position: chr3:47,004,130
INFO 2026-06-03 19:55:27 SinglePassSamProgram Processed 100,000,000 records. Elapsed time: 00:02:44s. Time for last 1,000,000: 1s. Last read position: chr3:47,818,054
INFO 2026-06-03 19:55:28 SinglePassSamProgram Processed 101,000,000 records. Elapsed time: 00:02:46s. Time for last 1,000,000: 1s. Last read position: chr3:48,501,217
INFO 2026-06-03 19:55:29 SinglePassSamProgram Processed 102,000,000 records. Elapsed time: 00:02:47s. Time for last 1,000,000: 1s. Last read position: chr3:49,015,044
INFO 2026-06-03 19:55:31 SinglePassSamProgram Processed 103,000,000 records. Elapsed time: 00:02:49s. Time for last 1,000,000: 1s. Last read position: chr3:49,804,324
INFO 2026-06-03 19:55:33 SinglePassSamProgram Processed 104,000,000 records. Elapsed time: 00:02:51s. Time for last 1,000,000: 1s. Last read position: chr3:51,937,678
INFO 2026-06-03 19:55:35 SinglePassSamProgram Processed 105,000,000 records. Elapsed time: 00:02:52s. Time for last 1,000,000: 1s. Last read position: chr3:52,706,156
INFO 2026-06-03 19:55:36 SinglePassSamProgram Processed 106,000,000 records. Elapsed time: 00:02:54s. Time for last 1,000,000: 1s. Last read position: chr3:58,168,621
INFO 2026-06-03 19:55:38 SinglePassSamProgram Processed 107,000,000 records. Elapsed time: 00:02:55s. Time for last 1,000,000: 1s. Last read position: chr3:98,593,067
INFO 2026-06-03 19:55:39 SinglePassSamProgram Processed 108,000,000 records. Elapsed time: 00:02:57s. Time for last 1,000,000: 1s. Last read position: chr3:113,885,907
INFO 2026-06-03 19:55:41 SinglePassSamProgram Processed 109,000,000 records. Elapsed time: 00:02:59s. Time for last 1,000,000: 1s. Last read position: chr3:123,618,652
INFO 2026-06-03 19:55:42 SinglePassSamProgram Processed 110,000,000 records. Elapsed time: 00:03:00s. Time for last 1,000,000: 1s. Last read position: chr3:127,605,122
INFO 2026-06-03 19:55:44 SinglePassSamProgram Processed 111,000,000 records. Elapsed time: 00:03:01s. Time for last 1,000,000: 1s. Last read position: chr3:129,437,071
INFO 2026-06-03 19:55:45 SinglePassSamProgram Processed 112,000,000 records. Elapsed time: 00:03:03s. Time for last 1,000,000: 1s. Last read position: chr3:139,358,229
INFO 2026-06-03 19:55:47 SinglePassSamProgram Processed 113,000,000 records. Elapsed time: 00:03:04s. Time for last 1,000,000: 1s. Last read position: chr3:150,546,093
INFO 2026-06-03 19:55:48 SinglePassSamProgram Processed 114,000,000 records. Elapsed time: 00:03:06s. Time for last 1,000,000: 1s. Last read position: chr3:169,483,691
INFO 2026-06-03 19:55:50 SinglePassSamProgram Processed 115,000,000 records. Elapsed time: 00:03:08s. Time for last 1,000,000: 1s. Last read position: chr3:183,064,598
INFO 2026-06-03 19:55:52 SinglePassSamProgram Processed 116,000,000 records. Elapsed time: 00:03:10s. Time for last 1,000,000: 1s. Last read position: chr3:184,321,984
INFO 2026-06-03 19:55:54 SinglePassSamProgram Processed 117,000,000 records. Elapsed time: 00:03:12s. Time for last 1,000,000: 1s. Last read position: chr3:188,760,240
INFO 2026-06-03 19:55:56 SinglePassSamProgram Processed 118,000,000 records. Elapsed time: 00:03:13s. Time for last 1,000,000: 1s. Last read position: chr3:195,864,138
INFO 2026-06-03 19:55:58 SinglePassSamProgram Processed 119,000,000 records. Elapsed time: 00:03:15s. Time for last 1,000,000: 1s. Last read position: chr4:444,313
INFO 2026-06-03 19:55:59 SinglePassSamProgram Processed 120,000,000 records. Elapsed time: 00:03:17s. Time for last 1,000,000: 1s. Last read position: chr4:1,728,489
INFO 2026-06-03 19:56:00 SinglePassSamProgram Processed 121,000,000 records. Elapsed time: 00:03:18s. Time for last 1,000,000: 1s. Last read position: chr4:2,693,612
INFO 2026-06-03 19:56:02 SinglePassSamProgram Processed 122,000,000 records. Elapsed time: 00:03:19s. Time for last 1,000,000: 1s. Last read position: chr4:6,716,712
INFO 2026-06-03 19:56:03 SinglePassSamProgram Processed 123,000,000 records. Elapsed time: 00:03:21s. Time for last 1,000,000: 1s. Last read position: chr4:13,600,159
INFO 2026-06-03 19:56:05 SinglePassSamProgram Processed 124,000,000 records. Elapsed time: 00:03:22s. Time for last 1,000,000: 1s. Last read position: chr4:39,218,080
INFO 2026-06-03 19:56:06 SinglePassSamProgram Processed 125,000,000 records. Elapsed time: 00:03:24s. Time for last 1,000,000: 1s. Last read position: chr4:54,263,830
INFO 2026-06-03 19:56:08 SinglePassSamProgram Processed 126,000,000 records. Elapsed time: 00:03:25s. Time for last 1,000,000: 1s. Last read position: chr4:73,091,475
INFO 2026-06-03 19:56:09 SinglePassSamProgram Processed 127,000,000 records. Elapsed time: 00:03:27s. Time for last 1,000,000: 1s. Last read position: chr4:82,428,152
INFO 2026-06-03 19:56:11 SinglePassSamProgram Processed 128,000,000 records. Elapsed time: 00:03:28s. Time for last 1,000,000: 1s. Last read position: chr4:87,134,474
INFO 2026-06-03 19:56:12 SinglePassSamProgram Processed 129,000,000 records. Elapsed time: 00:03:30s. Time for last 1,000,000: 1s. Last read position: chr4:106,324,991
INFO 2026-06-03 19:56:13 SinglePassSamProgram Processed 130,000,000 records. Elapsed time: 00:03:31s. Time for last 1,000,000: 1s. Last read position: chr4:128,287,678
INFO 2026-06-03 19:56:14 SinglePassSamProgram Processed 131,000,000 records. Elapsed time: 00:03:32s. Time for last 1,000,000: 1s. Last read position: chr4:150,256,087
INFO 2026-06-03 19:56:15 SinglePassSamProgram Processed 132,000,000 records. Elapsed time: 00:03:33s. Time for last 1,000,000: 1s. Last read position: chr4:174,262,950
INFO 2026-06-03 19:56:17 SinglePassSamProgram Processed 133,000,000 records. Elapsed time: 00:03:35s. Time for last 1,000,000: 1s. Last read position: chr5:453,788
INFO 2026-06-03 19:56:19 SinglePassSamProgram Processed 134,000,000 records. Elapsed time: 00:03:36s. Time for last 1,000,000: 1s. Last read position: chr5:10,407,127
INFO 2026-06-03 19:56:20 SinglePassSamProgram Processed 135,000,000 records. Elapsed time: 00:03:38s. Time for last 1,000,000: 1s. Last read position: chr5:32,048,576
INFO 2026-06-03 19:56:22 SinglePassSamProgram Processed 136,000,000 records. Elapsed time: 00:03:39s. Time for last 1,000,000: 1s. Last read position: chr5:43,535,622
INFO 2026-06-03 19:56:23 SinglePassSamProgram Processed 137,000,000 records. Elapsed time: 00:03:41s. Time for last 1,000,000: 1s. Last read position: chr5:67,166,421
INFO 2026-06-03 19:56:24 SinglePassSamProgram Processed 138,000,000 records. Elapsed time: 00:03:42s. Time for last 1,000,000: 1s. Last read position: chr5:78,015,500
INFO 2026-06-03 19:56:25 SinglePassSamProgram Processed 139,000,000 records. Elapsed time: 00:03:43s. Time for last 1,000,000: 1s. Last read position: chr5:96,767,452
INFO 2026-06-03 19:56:27 SinglePassSamProgram Processed 140,000,000 records. Elapsed time: 00:03:44s. Time for last 1,000,000: 1s. Last read position: chr5:128,392,069
INFO 2026-06-03 19:56:28 SinglePassSamProgram Processed 141,000,000 records. Elapsed time: 00:03:46s. Time for last 1,000,000: 1s. Last read position: chr5:135,571,285
INFO 2026-06-03 19:56:29 SinglePassSamProgram Processed 142,000,000 records. Elapsed time: 00:03:47s. Time for last 1,000,000: 1s. Last read position: chr5:140,632,864
INFO 2026-06-03 19:56:31 SinglePassSamProgram Processed 143,000,000 records. Elapsed time: 00:03:49s. Time for last 1,000,000: 1s. Last read position: chr5:141,863,559
INFO 2026-06-03 19:56:33 SinglePassSamProgram Processed 144,000,000 records. Elapsed time: 00:03:50s. Time for last 1,000,000: 1s. Last read position: chr5:150,375,403
INFO 2026-06-03 19:56:34 SinglePassSamProgram Processed 145,000,000 records. Elapsed time: 00:03:52s. Time for last 1,000,000: 1s. Last read position: chr5:157,743,954
INFO 2026-06-03 19:56:35 SinglePassSamProgram Processed 146,000,000 records. Elapsed time: 00:03:53s. Time for last 1,000,000: 1s. Last read position: chr5:175,492,246
INFO 2026-06-03 19:56:36 SinglePassSamProgram Processed 147,000,000 records. Elapsed time: 00:03:54s. Time for last 1,000,000: 1s. Last read position: chr5:178,712,647
INFO 2026-06-03 19:56:38 SinglePassSamProgram Processed 148,000,000 records. Elapsed time: 00:03:56s. Time for last 1,000,000: 1s. Last read position: chr5:179,865,281
INFO 2026-06-03 19:56:40 SinglePassSamProgram Processed 149,000,000 records. Elapsed time: 00:03:58s. Time for last 1,000,000: 1s. Last read position: chr6:2,766,114
INFO 2026-06-03 19:56:41 SinglePassSamProgram Processed 150,000,000 records. Elapsed time: 00:03:59s. Time for last 1,000,000: 1s. Last read position: chr6:10,723,221
INFO 2026-06-03 19:56:43 SinglePassSamProgram Processed 151,000,000 records. Elapsed time: 00:04:01s. Time for last 1,000,000: 1s. Last read position: chr6:20,490,221
INFO 2026-06-03 19:56:44 SinglePassSamProgram Processed 152,000,000 records. Elapsed time: 00:04:02s. Time for last 1,000,000: 1s. Last read position: chr6:26,183,930
INFO 2026-06-03 19:56:46 SinglePassSamProgram Processed 153,000,000 records. Elapsed time: 00:04:04s. Time for last 1,000,000: 1s. Last read position: chr6:29,888,675
INFO 2026-06-03 19:56:47 SinglePassSamProgram Processed 154,000,000 records. Elapsed time: 00:04:05s. Time for last 1,000,000: 1s. Last read position: chr6:30,892,385
INFO 2026-06-03 19:56:48 SinglePassSamProgram Processed 155,000,000 records. Elapsed time: 00:04:06s. Time for last 1,000,000: 1s. Last read position: chr6:31,623,831
INFO 2026-06-03 19:56:50 SinglePassSamProgram Processed 156,000,000 records. Elapsed time: 00:04:08s. Time for last 1,000,000: 1s. Last read position: chr6:31,816,230
INFO 2026-06-03 19:56:51 SinglePassSamProgram Processed 157,000,000 records. Elapsed time: 00:04:09s. Time for last 1,000,000: 1s. Last read position: chr6:32,119,088
INFO 2026-06-03 19:56:53 SinglePassSamProgram Processed 158,000,000 records. Elapsed time: 00:04:11s. Time for last 1,000,000: 1s. Last read position: chr6:33,304,439
INFO 2026-06-03 19:56:55 SinglePassSamProgram Processed 159,000,000 records. Elapsed time: 00:04:13s. Time for last 1,000,000: 1s. Last read position: chr6:35,086,972
INFO 2026-06-03 19:56:56 SinglePassSamProgram Processed 160,000,000 records. Elapsed time: 00:04:14s. Time for last 1,000,000: 1s. Last read position: chr6:41,771,298
INFO 2026-06-03 19:56:58 SinglePassSamProgram Processed 161,000,000 records. Elapsed time: 00:04:16s. Time for last 1,000,000: 1s. Last read position: chr6:43,432,628
INFO 2026-06-03 19:57:00 SinglePassSamProgram Processed 162,000,000 records. Elapsed time: 00:04:18s. Time for last 1,000,000: 2s. Last read position: chr6:47,234,770
INFO 2026-06-03 19:57:02 SinglePassSamProgram Processed 163,000,000 records. Elapsed time: 00:04:20s. Time for last 1,000,000: 2s. Last read position: chr6:56,459,039
INFO 2026-06-03 19:57:04 SinglePassSamProgram Processed 164,000,000 records. Elapsed time: 00:04:22s. Time for last 1,000,000: 2s. Last read position: chr6:79,017,465
INFO 2026-06-03 19:57:06 SinglePassSamProgram Processed 165,000,000 records. Elapsed time: 00:04:24s. Time for last 1,000,000: 1s. Last read position: chr6:99,408,230
INFO 2026-06-03 19:57:08 SinglePassSamProgram Processed 166,000,000 records. Elapsed time: 00:04:26s. Time for last 1,000,000: 1s. Last read position: chr6:111,259,663
INFO 2026-06-03 19:57:10 SinglePassSamProgram Processed 167,000,000 records. Elapsed time: 00:04:28s. Time for last 1,000,000: 1s. Last read position: chr6:125,220,150
INFO 2026-06-03 19:57:12 SinglePassSamProgram Processed 168,000,000 records. Elapsed time: 00:04:29s. Time for last 1,000,000: 1s. Last read position: chr6:138,334,618
INFO 2026-06-03 19:57:13 SinglePassSamProgram Processed 169,000,000 records. Elapsed time: 00:04:31s. Time for last 1,000,000: 1s. Last read position: chr6:149,378,954
INFO 2026-06-03 19:57:15 SinglePassSamProgram Processed 170,000,000 records. Elapsed time: 00:04:33s. Time for last 1,000,000: 1s. Last read position: chr6:156,829,266
INFO 2026-06-03 19:57:17 SinglePassSamProgram Processed 171,000,000 records. Elapsed time: 00:04:34s. Time for last 1,000,000: 1s. Last read position: chr6:158,787,097
INFO 2026-06-03 19:57:18 SinglePassSamProgram Processed 172,000,000 records. Elapsed time: 00:04:36s. Time for last 1,000,000: 1s. Last read position: chr6:170,535,346
INFO 2026-06-03 19:57:20 SinglePassSamProgram Processed 173,000,000 records. Elapsed time: 00:04:38s. Time for last 1,000,000: 1s. Last read position: chr7:2,647,477
INFO 2026-06-03 19:57:22 SinglePassSamProgram Processed 174,000,000 records. Elapsed time: 00:04:40s. Time for last 1,000,000: 1s. Last read position: chr7:5,394,487
INFO 2026-06-03 19:57:24 SinglePassSamProgram Processed 175,000,000 records. Elapsed time: 00:04:41s. Time for last 1,000,000: 1s. Last read position: chr7:6,652,486
INFO 2026-06-03 19:57:26 SinglePassSamProgram Processed 176,000,000 records. Elapsed time: 00:04:43s. Time for last 1,000,000: 2s. Last read position: chr7:23,507,460
INFO 2026-06-03 19:57:28 SinglePassSamProgram Processed 177,000,000 records. Elapsed time: 00:04:45s. Time for last 1,000,000: 1s. Last read position: chr7:39,013,547
INFO 2026-06-03 19:57:29 SinglePassSamProgram Processed 178,000,000 records. Elapsed time: 00:04:47s. Time for last 1,000,000: 1s. Last read position: chr7:44,799,798
INFO 2026-06-03 19:57:31 SinglePassSamProgram Processed 179,000,000 records. Elapsed time: 00:04:49s. Time for last 1,000,000: 1s. Last read position: chr7:55,165,286
INFO 2026-06-03 19:57:33 SinglePassSamProgram Processed 180,000,000 records. Elapsed time: 00:04:51s. Time for last 1,000,000: 1s. Last read position: chr7:72,868,862
INFO 2026-06-03 19:57:34 SinglePassSamProgram Processed 181,000,000 records. Elapsed time: 00:04:52s. Time for last 1,000,000: 1s. Last read position: chr7:73,508,362
INFO 2026-06-03 19:57:36 SinglePassSamProgram Processed 182,000,000 records. Elapsed time: 00:04:54s. Time for last 1,000,000: 1s. Last read position: chr7:75,108,988
INFO 2026-06-03 19:57:38 SinglePassSamProgram Processed 183,000,000 records. Elapsed time: 00:04:56s. Time for last 1,000,000: 1s. Last read position: chr7:76,057,466
INFO 2026-06-03 19:57:40 SinglePassSamProgram Processed 184,000,000 records. Elapsed time: 00:04:57s. Time for last 1,000,000: 1s. Last read position: chr7:76,990,270
INFO 2026-06-03 19:57:41 SinglePassSamProgram Processed 185,000,000 records. Elapsed time: 00:04:59s. Time for last 1,000,000: 1s. Last read position: chr7:92,062,400
INFO 2026-06-03 19:57:43 SinglePassSamProgram Processed 186,000,000 records. Elapsed time: 00:05:01s. Time for last 1,000,000: 1s. Last read position: chr7:98,961,329
INFO 2026-06-03 19:57:45 SinglePassSamProgram Processed 187,000,000 records. Elapsed time: 00:05:03s. Time for last 1,000,000: 1s. Last read position: chr7:100,156,910
INFO 2026-06-03 19:57:46 SinglePassSamProgram Processed 188,000,000 records. Elapsed time: 00:05:04s. Time for last 1,000,000: 1s. Last read position: chr7:100,805,574
INFO 2026-06-03 19:57:48 SinglePassSamProgram Processed 189,000,000 records. Elapsed time: 00:05:06s. Time for last 1,000,000: 1s. Last read position: chr7:102,433,648
INFO 2026-06-03 19:57:50 SinglePassSamProgram Processed 190,000,000 records. Elapsed time: 00:05:08s. Time for last 1,000,000: 1s. Last read position: chr7:102,659,978
INFO 2026-06-03 19:57:52 SinglePassSamProgram Processed 191,000,000 records. Elapsed time: 00:05:10s. Time for last 1,000,000: 1s. Last read position: chr7:116,783,435
INFO 2026-06-03 19:57:54 SinglePassSamProgram Processed 192,000,000 records. Elapsed time: 00:05:12s. Time for last 1,000,000: 1s. Last read position: chr7:128,769,066
INFO 2026-06-03 19:57:55 SinglePassSamProgram Processed 193,000,000 records. Elapsed time: 00:05:13s. Time for last 1,000,000: 1s. Last read position: chr7:137,251,251
INFO 2026-06-03 19:57:57 SinglePassSamProgram Processed 194,000,000 records. Elapsed time: 00:05:15s. Time for last 1,000,000: 1s. Last read position: chr7:138,861,242
INFO 2026-06-03 19:57:59 SinglePassSamProgram Processed 195,000,000 records. Elapsed time: 00:05:17s. Time for last 1,000,000: 1s. Last read position: chr7:141,074,447
INFO 2026-06-03 19:58:01 SinglePassSamProgram Processed 196,000,000 records. Elapsed time: 00:05:18s. Time for last 1,000,000: 1s. Last read position: chr7:144,362,973
INFO 2026-06-03 19:58:02 SinglePassSamProgram Processed 197,000,000 records. Elapsed time: 00:05:20s. Time for last 1,000,000: 1s. Last read position: chr7:150,372,618
INFO 2026-06-03 19:58:04 SinglePassSamProgram Processed 198,000,000 records. Elapsed time: 00:05:22s. Time for last 1,000,000: 1s. Last read position: chr7:152,182,047
INFO 2026-06-03 19:58:06 SinglePassSamProgram Processed 199,000,000 records. Elapsed time: 00:05:24s. Time for last 1,000,000: 1s. Last read position: chr8:8,702,749
INFO 2026-06-03 19:58:07 SinglePassSamProgram Processed 200,000,000 records. Elapsed time: 00:05:25s. Time for last 1,000,000: 1s. Last read position: chr8:18,872,322
INFO 2026-06-03 19:58:09 SinglePassSamProgram Processed 201,000,000 records. Elapsed time: 00:05:27s. Time for last 1,000,000: 1s. Last read position: chr8:23,368,271
INFO 2026-06-03 19:58:11 SinglePassSamProgram Processed 202,000,000 records. Elapsed time: 00:05:29s. Time for last 1,000,000: 1s. Last read position: chr8:32,742,668
INFO 2026-06-03 19:58:13 SinglePassSamProgram Processed 203,000,000 records. Elapsed time: 00:05:31s. Time for last 1,000,000: 1s. Last read position: chr8:38,105,606
INFO 2026-06-03 19:58:14 SinglePassSamProgram Processed 204,000,000 records. Elapsed time: 00:05:32s. Time for last 1,000,000: 1s. Last read position: chr8:38,348,063
INFO 2026-06-03 19:58:16 SinglePassSamProgram Processed 205,000,000 records. Elapsed time: 00:05:34s. Time for last 1,000,000: 1s. Last read position: chr8:38,820,597
INFO 2026-06-03 19:58:18 SinglePassSamProgram Processed 206,000,000 records. Elapsed time: 00:05:35s. Time for last 1,000,000: 1s. Last read position: chr8:41,933,144
INFO 2026-06-03 19:58:19 SinglePassSamProgram Processed 207,000,000 records. Elapsed time: 00:05:37s. Time for last 1,000,000: 1s. Last read position: chr8:48,043,107
INFO 2026-06-03 19:58:21 SinglePassSamProgram Processed 208,000,000 records. Elapsed time: 00:05:39s. Time for last 1,000,000: 1s. Last read position: chr8:67,257,756
INFO 2026-06-03 19:58:23 SinglePassSamProgram Processed 209,000,000 records. Elapsed time: 00:05:41s. Time for last 1,000,000: 1s. Last read position: chr8:85,397,300
INFO 2026-06-03 19:58:25 SinglePassSamProgram Processed 210,000,000 records. Elapsed time: 00:05:43s. Time for last 1,000,000: 2s. Last read position: chr8:99,875,561
INFO 2026-06-03 19:58:26 SinglePassSamProgram Processed 211,000,000 records. Elapsed time: 00:05:44s. Time for last 1,000,000: 1s. Last read position: chr8:100,721,420
INFO 2026-06-03 19:58:28 SinglePassSamProgram Processed 212,000,000 records. Elapsed time: 00:05:46s. Time for last 1,000,000: 1s. Last read position: chr8:119,791,386
INFO 2026-06-03 19:58:30 SinglePassSamProgram Processed 213,000,000 records. Elapsed time: 00:05:48s. Time for last 1,000,000: 1s. Last read position: chr8:135,548,828
INFO 2026-06-03 19:58:32 SinglePassSamProgram Processed 214,000,000 records. Elapsed time: 00:05:49s. Time for last 1,000,000: 1s. Last read position: chr8:143,559,822
INFO 2026-06-03 19:58:33 SinglePassSamProgram Processed 215,000,000 records. Elapsed time: 00:05:51s. Time for last 1,000,000: 1s. Last read position: chr8:143,808,778
INFO 2026-06-03 19:58:34 SinglePassSamProgram Processed 216,000,000 records. Elapsed time: 00:05:52s. Time for last 1,000,000: 1s. Last read position: chr8:143,859,718
INFO 2026-06-03 19:58:36 SinglePassSamProgram Processed 217,000,000 records. Elapsed time: 00:05:53s. Time for last 1,000,000: 1s. Last read position: chr8:143,861,487
INFO 2026-06-03 19:58:37 SinglePassSamProgram Processed 218,000,000 records. Elapsed time: 00:05:54s. Time for last 1,000,000: 1s. Last read position: chr8:143,863,117
INFO 2026-06-03 19:58:38 SinglePassSamProgram Processed 219,000,000 records. Elapsed time: 00:05:56s. Time for last 1,000,000: 1s. Last read position: chr8:143,864,828
INFO 2026-06-03 19:58:40 SinglePassSamProgram Processed 220,000,000 records. Elapsed time: 00:05:57s. Time for last 1,000,000: 1s. Last read position: chr8:143,867,154
INFO 2026-06-03 19:58:41 SinglePassSamProgram Processed 221,000,000 records. Elapsed time: 00:05:59s. Time for last 1,000,000: 1s. Last read position: chr8:143,927,563
INFO 2026-06-03 19:58:42 SinglePassSamProgram Processed 222,000,000 records. Elapsed time: 00:06:00s. Time for last 1,000,000: 1s. Last read position: chr8:144,317,274
INFO 2026-06-03 19:58:44 SinglePassSamProgram Processed 223,000,000 records. Elapsed time: 00:06:02s. Time for last 1,000,000: 1s. Last read position: chr8:144,524,470
INFO 2026-06-03 19:58:45 SinglePassSamProgram Processed 224,000,000 records. Elapsed time: 00:06:03s. Time for last 1,000,000: 1s. Last read position: chr9:5,801,302
INFO 2026-06-03 19:58:46 SinglePassSamProgram Processed 225,000,000 records. Elapsed time: 00:06:04s. Time for last 1,000,000: 1s. Last read position: chr9:26,917,121
INFO 2026-06-03 19:58:48 SinglePassSamProgram Processed 226,000,000 records. Elapsed time: 00:06:06s. Time for last 1,000,000: 1s. Last read position: chr9:35,057,171
INFO 2026-06-03 19:58:50 SinglePassSamProgram Processed 227,000,000 records. Elapsed time: 00:06:08s. Time for last 1,000,000: 1s. Last read position: chr9:37,800,985
INFO 2026-06-03 19:58:51 SinglePassSamProgram Processed 228,000,000 records. Elapsed time: 00:06:09s. Time for last 1,000,000: 1s. Last read position: chr9:77,280,180
INFO 2026-06-03 19:58:53 SinglePassSamProgram Processed 229,000,000 records. Elapsed time: 00:06:10s. Time for last 1,000,000: 1s. Last read position: chr9:87,707,130
INFO 2026-06-03 19:58:54 SinglePassSamProgram Processed 230,000,000 records. Elapsed time: 00:06:12s. Time for last 1,000,000: 1s. Last read position: chr9:93,516,121
INFO 2026-06-03 19:58:56 SinglePassSamProgram Processed 231,000,000 records. Elapsed time: 00:06:14s. Time for last 1,000,000: 1s. Last read position: chr9:100,297,983
INFO 2026-06-03 19:58:58 SinglePassSamProgram Processed 232,000,000 records. Elapsed time: 00:06:16s. Time for last 1,000,000: 1s. Last read position: chr9:112,157,570
INFO 2026-06-03 19:59:00 SinglePassSamProgram Processed 233,000,000 records. Elapsed time: 00:06:17s. Time for last 1,000,000: 1s. Last read position: chr9:120,923,723
INFO 2026-06-03 19:59:01 SinglePassSamProgram Processed 234,000,000 records. Elapsed time: 00:06:19s. Time for last 1,000,000: 1s. Last read position: chr9:126,833,629
INFO 2026-06-03 19:59:03 SinglePassSamProgram Processed 235,000,000 records. Elapsed time: 00:06:20s. Time for last 1,000,000: 1s. Last read position: chr9:128,260,668
INFO 2026-06-03 19:59:04 SinglePassSamProgram Processed 236,000,000 records. Elapsed time: 00:06:22s. Time for last 1,000,000: 1s. Last read position: chr9:129,008,716
INFO 2026-06-03 19:59:06 SinglePassSamProgram Processed 237,000,000 records. Elapsed time: 00:06:24s. Time for last 1,000,000: 1s. Last read position: chr9:130,884,792
INFO 2026-06-03 19:59:08 SinglePassSamProgram Processed 238,000,000 records. Elapsed time: 00:06:26s. Time for last 1,000,000: 1s. Last read position: chr9:132,902,636
INFO 2026-06-03 19:59:09 SinglePassSamProgram Processed 239,000,000 records. Elapsed time: 00:06:27s. Time for last 1,000,000: 1s. Last read position: chr9:134,417,217
INFO 2026-06-03 19:59:11 SinglePassSamProgram Processed 240,000,000 records. Elapsed time: 00:06:29s. Time for last 1,000,000: 1s. Last read position: chr9:136,502,070
INFO 2026-06-03 19:59:13 SinglePassSamProgram Processed 241,000,000 records. Elapsed time: 00:06:31s. Time for last 1,000,000: 1s. Last read position: chr9:137,215,947
INFO 2026-06-03 19:59:15 SinglePassSamProgram Processed 242,000,000 records. Elapsed time: 00:06:32s. Time for last 1,000,000: 1s. Last read position: chr10:3,134,488
INFO 2026-06-03 19:59:16 SinglePassSamProgram Processed 243,000,000 records. Elapsed time: 00:06:34s. Time for last 1,000,000: 1s. Last read position: chr10:8,058,359
INFO 2026-06-03 19:59:18 SinglePassSamProgram Processed 244,000,000 records. Elapsed time: 00:06:36s. Time for last 1,000,000: 1s. Last read position: chr10:21,725,487
INFO 2026-06-03 19:59:20 SinglePassSamProgram Processed 245,000,000 records. Elapsed time: 00:06:38s. Time for last 1,000,000: 1s. Last read position: chr10:29,554,806
INFO 2026-06-03 19:59:22 SinglePassSamProgram Processed 246,000,000 records. Elapsed time: 00:06:39s. Time for last 1,000,000: 1s. Last read position: chr10:43,386,826
INFO 2026-06-03 19:59:23 SinglePassSamProgram Processed 247,000,000 records. Elapsed time: 00:06:41s. Time for last 1,000,000: 1s. Last read position: chr10:47,762,602
INFO 2026-06-03 19:59:25 SinglePassSamProgram Processed 248,000,000 records. Elapsed time: 00:06:43s. Time for last 1,000,000: 1s. Last read position: chr10:67,990,990
INFO 2026-06-03 19:59:27 SinglePassSamProgram Processed 249,000,000 records. Elapsed time: 00:06:45s. Time for last 1,000,000: 1s. Last read position: chr10:71,752,977
INFO 2026-06-03 19:59:29 SinglePassSamProgram Processed 250,000,000 records. Elapsed time: 00:06:46s. Time for last 1,000,000: 1s. Last read position: chr10:75,029,462
INFO 2026-06-03 19:59:30 SinglePassSamProgram Processed 251,000,000 records. Elapsed time: 00:06:48s. Time for last 1,000,000: 1s. Last read position: chr10:80,169,054
INFO 2026-06-03 19:59:32 SinglePassSamProgram Processed 252,000,000 records. Elapsed time: 00:06:50s. Time for last 1,000,000: 1s. Last read position: chr10:87,230,980
INFO 2026-06-03 19:59:34 SinglePassSamProgram Processed 253,000,000 records. Elapsed time: 00:06:52s. Time for last 1,000,000: 1s. Last read position: chr10:95,238,032
INFO 2026-06-03 19:59:36 SinglePassSamProgram Processed 254,000,000 records. Elapsed time: 00:06:54s. Time for last 1,000,000: 2s. Last read position: chr10:100,529,439
INFO 2026-06-03 19:59:38 SinglePassSamProgram Processed 255,000,000 records. Elapsed time: 00:06:56s. Time for last 1,000,000: 1s. Last read position: chr10:102,744,020
INFO 2026-06-03 19:59:40 SinglePassSamProgram Processed 256,000,000 records. Elapsed time: 00:06:57s. Time for last 1,000,000: 1s. Last read position: chr10:114,843,700
INFO 2026-06-03 19:59:42 SinglePassSamProgram Processed 257,000,000 records. Elapsed time: 00:06:59s. Time for last 1,000,000: 1s. Last read position: chr10:124,682,230
INFO 2026-06-03 19:59:43 SinglePassSamProgram Processed 258,000,000 records. Elapsed time: 00:07:01s. Time for last 1,000,000: 1s. Last read position: chr10:133,289,843
INFO 2026-06-03 19:59:45 SinglePassSamProgram Processed 259,000,000 records. Elapsed time: 00:07:03s. Time for last 1,000,000: 1s. Last read position: chr11:614,865
INFO 2026-06-03 19:59:47 SinglePassSamProgram Processed 260,000,000 records. Elapsed time: 00:07:05s. Time for last 1,000,000: 1s. Last read position: chr11:1,835,416
INFO 2026-06-03 19:59:49 SinglePassSamProgram Processed 261,000,000 records. Elapsed time: 00:07:06s. Time for last 1,000,000: 1s. Last read position: chr11:6,601,533
INFO 2026-06-03 19:59:50 SinglePassSamProgram Processed 262,000,000 records. Elapsed time: 00:07:08s. Time for last 1,000,000: 1s. Last read position: chr11:10,802,295
INFO 2026-06-03 19:59:52 SinglePassSamProgram Processed 263,000,000 records. Elapsed time: 00:07:10s. Time for last 1,000,000: 1s. Last read position: chr11:27,472,692
INFO 2026-06-03 19:59:54 SinglePassSamProgram Processed 264,000,000 records. Elapsed time: 00:07:12s. Time for last 1,000,000: 2s. Last read position: chr11:46,381,734
INFO 2026-06-03 19:59:56 SinglePassSamProgram Processed 265,000,000 records. Elapsed time: 00:07:14s. Time for last 1,000,000: 1s. Last read position: chr11:57,310,320
INFO 2026-06-03 19:59:58 SinglePassSamProgram Processed 266,000,000 records. Elapsed time: 00:07:16s. Time for last 1,000,000: 1s. Last read position: chr11:59,182,329
INFO 2026-06-03 19:59:59 SinglePassSamProgram Processed 267,000,000 records. Elapsed time: 00:07:17s. Time for last 1,000,000: 1s. Last read position: chr11:61,416,109
INFO 2026-06-03 20:00:01 SinglePassSamProgram Processed 268,000,000 records. Elapsed time: 00:07:19s. Time for last 1,000,000: 1s. Last read position: chr11:62,559,750
INFO 2026-06-03 20:00:03 SinglePassSamProgram Processed 269,000,000 records. Elapsed time: 00:07:21s. Time for last 1,000,000: 1s. Last read position: chr11:62,888,582
INFO 2026-06-03 20:00:04 SinglePassSamProgram Processed 270,000,000 records. Elapsed time: 00:07:22s. Time for last 1,000,000: 1s. Last read position: chr11:64,317,294
INFO 2026-06-03 20:00:06 SinglePassSamProgram Processed 271,000,000 records. Elapsed time: 00:07:24s. Time for last 1,000,000: 1s. Last read position: chr11:65,111,383
INFO 2026-06-03 20:00:08 SinglePassSamProgram Processed 272,000,000 records. Elapsed time: 00:07:26s. Time for last 1,000,000: 1s. Last read position: chr11:65,582,080
INFO 2026-06-03 20:00:09 SinglePassSamProgram Processed 273,000,000 records. Elapsed time: 00:07:27s. Time for last 1,000,000: 1s. Last read position: chr11:65,780,074
INFO 2026-06-03 20:00:11 SinglePassSamProgram Processed 274,000,000 records. Elapsed time: 00:07:29s. Time for last 1,000,000: 1s. Last read position: chr11:66,616,822
INFO 2026-06-03 20:00:13 SinglePassSamProgram Processed 275,000,000 records. Elapsed time: 00:07:31s. Time for last 1,000,000: 1s. Last read position: chr11:67,395,941
INFO 2026-06-03 20:00:15 SinglePassSamProgram Processed 276,000,000 records. Elapsed time: 00:07:32s. Time for last 1,000,000: 1s. Last read position: chr11:68,416,371
INFO 2026-06-03 20:00:16 SinglePassSamProgram Processed 277,000,000 records. Elapsed time: 00:07:34s. Time for last 1,000,000: 1s. Last read position: chr11:72,003,936
INFO 2026-06-03 20:00:18 SinglePassSamProgram Processed 278,000,000 records. Elapsed time: 00:07:36s. Time for last 1,000,000: 1s. Last read position: chr11:73,296,565
INFO 2026-06-03 20:00:20 SinglePassSamProgram Processed 279,000,000 records. Elapsed time: 00:07:37s. Time for last 1,000,000: 1s. Last read position: chr11:77,084,931
INFO 2026-06-03 20:00:21 SinglePassSamProgram Processed 280,000,000 records. Elapsed time: 00:07:39s. Time for last 1,000,000: 1s. Last read position: chr11:92,844,279
INFO 2026-06-03 20:00:23 SinglePassSamProgram Processed 281,000,000 records. Elapsed time: 00:07:41s. Time for last 1,000,000: 1s. Last read position: chr11:102,527,559
INFO 2026-06-03 20:00:25 SinglePassSamProgram Processed 282,000,000 records. Elapsed time: 00:07:42s. Time for last 1,000,000: 1s. Last read position: chr11:117,397,260
INFO 2026-06-03 20:00:26 SinglePassSamProgram Processed 283,000,000 records. Elapsed time: 00:07:44s. Time for last 1,000,000: 1s. Last read position: chr11:118,956,884
INFO 2026-06-03 20:00:28 SinglePassSamProgram Processed 284,000,000 records. Elapsed time: 00:07:46s. Time for last 1,000,000: 1s. Last read position: chr11:120,137,806
INFO 2026-06-03 20:00:30 SinglePassSamProgram Processed 285,000,000 records. Elapsed time: 00:07:47s. Time for last 1,000,000: 1s. Last read position: chr11:124,767,485
INFO 2026-06-03 20:00:31 SinglePassSamProgram Processed 286,000,000 records. Elapsed time: 00:07:49s. Time for last 1,000,000: 1s. Last read position: chr11:130,141,544
INFO 2026-06-03 20:00:33 SinglePassSamProgram Processed 287,000,000 records. Elapsed time: 00:07:50s. Time for last 1,000,000: 1s. Last read position: chr12:2,803,164
INFO 2026-06-03 20:00:34 SinglePassSamProgram Processed 288,000,000 records. Elapsed time: 00:07:52s. Time for last 1,000,000: 1s. Last read position: chr12:6,573,203
INFO 2026-06-03 20:00:36 SinglePassSamProgram Processed 289,000,000 records. Elapsed time: 00:07:53s. Time for last 1,000,000: 1s. Last read position: chr12:6,956,507
INFO 2026-06-03 20:00:37 SinglePassSamProgram Processed 290,000,000 records. Elapsed time: 00:07:55s. Time for last 1,000,000: 1s. Last read position: chr12:10,723,028
INFO 2026-06-03 20:00:39 SinglePassSamProgram Processed 291,000,000 records. Elapsed time: 00:07:57s. Time for last 1,000,000: 1s. Last read position: chr12:21,638,430
INFO 2026-06-03 20:00:41 SinglePassSamProgram Processed 292,000,000 records. Elapsed time: 00:07:58s. Time for last 1,000,000: 1s. Last read position: chr12:45,924,855
INFO 2026-06-03 20:00:42 SinglePassSamProgram Processed 293,000,000 records. Elapsed time: 00:08:00s. Time for last 1,000,000: 1s. Last read position: chr12:49,040,435
INFO 2026-06-03 20:00:44 SinglePassSamProgram Processed 294,000,000 records. Elapsed time: 00:08:02s. Time for last 1,000,000: 1s. Last read position: chr12:49,759,233
INFO 2026-06-03 20:00:46 SinglePassSamProgram Processed 295,000,000 records. Elapsed time: 00:08:04s. Time for last 1,000,000: 1s. Last read position: chr12:52,245,581
INFO 2026-06-03 20:00:48 SinglePassSamProgram Processed 296,000,000 records. Elapsed time: 00:08:06s. Time for last 1,000,000: 1s. Last read position: chr12:53,383,204
INFO 2026-06-03 20:00:50 SinglePassSamProgram Processed 297,000,000 records. Elapsed time: 00:08:08s. Time for last 1,000,000: 1s. Last read position: chr12:55,413,879
INFO 2026-06-03 20:00:51 SinglePassSamProgram Processed 298,000,000 records. Elapsed time: 00:08:09s. Time for last 1,000,000: 1s. Last read position: chr12:56,164,321
INFO 2026-06-03 20:00:53 SinglePassSamProgram Processed 299,000,000 records. Elapsed time: 00:08:11s. Time for last 1,000,000: 1s. Last read position: chr12:56,720,194
INFO 2026-06-03 20:00:55 SinglePassSamProgram Processed 300,000,000 records. Elapsed time: 00:08:13s. Time for last 1,000,000: 1s. Last read position: chr12:57,254,878
INFO 2026-06-03 20:00:56 SinglePassSamProgram Processed 301,000,000 records. Elapsed time: 00:08:14s. Time for last 1,000,000: 1s. Last read position: chr12:66,153,402
INFO 2026-06-03 20:00:58 SinglePassSamProgram Processed 302,000,000 records. Elapsed time: 00:08:16s. Time for last 1,000,000: 1s. Last read position: chr12:82,756,539
INFO 2026-06-03 20:00:59 SinglePassSamProgram Processed 303,000,000 records. Elapsed time: 00:08:17s. Time for last 1,000,000: 1s. Last read position: chr12:101,697,963
INFO 2026-06-03 20:01:01 SinglePassSamProgram Processed 304,000,000 records. Elapsed time: 00:08:19s. Time for last 1,000,000: 1s. Last read position: chr12:110,327,582
INFO 2026-06-03 20:01:03 SinglePassSamProgram Processed 305,000,000 records. Elapsed time: 00:08:21s. Time for last 1,000,000: 1s. Last read position: chr12:112,941,632
INFO 2026-06-03 20:01:05 SinglePassSamProgram Processed 306,000,000 records. Elapsed time: 00:08:23s. Time for last 1,000,000: 1s. Last read position: chr12:118,034,167
INFO 2026-06-03 20:01:07 SinglePassSamProgram Processed 307,000,000 records. Elapsed time: 00:08:24s. Time for last 1,000,000: 1s. Last read position: chr12:120,534,827
INFO 2026-06-03 20:01:08 SinglePassSamProgram Processed 308,000,000 records. Elapsed time: 00:08:26s. Time for last 1,000,000: 1s. Last read position: chr12:122,702,286
INFO 2026-06-03 20:01:10 SinglePassSamProgram Processed 309,000,000 records. Elapsed time: 00:08:28s. Time for last 1,000,000: 1s. Last read position: chr12:124,993,992
INFO 2026-06-03 20:01:12 SinglePassSamProgram Processed 310,000,000 records. Elapsed time: 00:08:29s. Time for last 1,000,000: 1s. Last read position: chr12:132,582,059
INFO 2026-06-03 20:01:13 SinglePassSamProgram Processed 311,000,000 records. Elapsed time: 00:08:31s. Time for last 1,000,000: 1s. Last read position: chr13:20,059,445
INFO 2026-06-03 20:01:15 SinglePassSamProgram Processed 312,000,000 records. Elapsed time: 00:08:33s. Time for last 1,000,000: 1s. Last read position: chr13:33,053,899
INFO 2026-06-03 20:01:17 SinglePassSamProgram Processed 313,000,000 records. Elapsed time: 00:08:35s. Time for last 1,000,000: 1s. Last read position: chr13:54,408,886
INFO 2026-06-03 20:01:19 SinglePassSamProgram Processed 314,000,000 records. Elapsed time: 00:08:36s. Time for last 1,000,000: 1s. Last read position: chr13:98,143,393
INFO 2026-06-03 20:01:20 SinglePassSamProgram Processed 315,000,000 records. Elapsed time: 00:08:38s. Time for last 1,000,000: 1s. Last read position: chr13:109,783,822
INFO 2026-06-03 20:01:22 SinglePassSamProgram Processed 316,000,000 records. Elapsed time: 00:08:40s. Time for last 1,000,000: 1s. Last read position: chr13:113,823,382
INFO 2026-06-03 20:01:24 SinglePassSamProgram Processed 317,000,000 records. Elapsed time: 00:08:42s. Time for last 1,000,000: 1s. Last read position: chr14:21,523,628
INFO 2026-06-03 20:01:26 SinglePassSamProgram Processed 318,000,000 records. Elapsed time: 00:08:44s. Time for last 1,000,000: 1s. Last read position: chr14:23,557,218
INFO 2026-06-03 20:01:27 SinglePassSamProgram Processed 319,000,000 records. Elapsed time: 00:08:45s. Time for last 1,000,000: 1s. Last read position: chr14:24,432,290
INFO 2026-06-03 20:01:29 SinglePassSamProgram Processed 320,000,000 records. Elapsed time: 00:08:47s. Time for last 1,000,000: 1s. Last read position: chr14:49,585,969
INFO 2026-06-03 20:01:31 SinglePassSamProgram Processed 321,000,000 records. Elapsed time: 00:08:48s. Time for last 1,000,000: 1s. Last read position: chr14:55,636,446
INFO 2026-06-03 20:01:32 SinglePassSamProgram Processed 322,000,000 records. Elapsed time: 00:08:50s. Time for last 1,000,000: 1s. Last read position: chr14:65,077,974
INFO 2026-06-03 20:01:34 SinglePassSamProgram Processed 323,000,000 records. Elapsed time: 00:08:52s. Time for last 1,000,000: 1s. Last read position: chr14:73,284,165
INFO 2026-06-03 20:01:36 SinglePassSamProgram Processed 324,000,000 records. Elapsed time: 00:08:54s. Time for last 1,000,000: 1s. Last read position: chr14:77,025,739
INFO 2026-06-03 20:01:38 SinglePassSamProgram Processed 325,000,000 records. Elapsed time: 00:08:55s. Time for last 1,000,000: 1s. Last read position: chr14:92,116,196
INFO 2026-06-03 20:01:40 SinglePassSamProgram Processed 326,000,000 records. Elapsed time: 00:08:57s. Time for last 1,000,000: 1s. Last read position: chr14:102,008,327
INFO 2026-06-03 20:01:41 SinglePassSamProgram Processed 327,000,000 records. Elapsed time: 00:08:59s. Time for last 1,000,000: 1s. Last read position: chr14:103,492,024
INFO 2026-06-03 20:01:43 SinglePassSamProgram Processed 328,000,000 records. Elapsed time: 00:09:01s. Time for last 1,000,000: 1s. Last read position: chr14:105,379,745
INFO 2026-06-03 20:01:45 SinglePassSamProgram Processed 329,000,000 records. Elapsed time: 00:09:02s. Time for last 1,000,000: 1s. Last read position: chr15:29,716,701
INFO 2026-06-03 20:01:46 SinglePassSamProgram Processed 330,000,000 records. Elapsed time: 00:09:04s. Time for last 1,000,000: 1s. Last read position: chr15:40,036,989
INFO 2026-06-03 20:01:48 SinglePassSamProgram Processed 331,000,000 records. Elapsed time: 00:09:06s. Time for last 1,000,000: 1s. Last read position: chr15:41,835,087
INFO 2026-06-03 20:01:50 SinglePassSamProgram Processed 332,000,000 records. Elapsed time: 00:09:07s. Time for last 1,000,000: 1s. Last read position: chr15:43,809,771
INFO 2026-06-03 20:01:51 SinglePassSamProgram Processed 333,000,000 records. Elapsed time: 00:09:09s. Time for last 1,000,000: 1s. Last read position: chr15:57,063,805
INFO 2026-06-03 20:01:53 SinglePassSamProgram Processed 334,000,000 records. Elapsed time: 00:09:11s. Time for last 1,000,000: 1s. Last read position: chr15:64,160,123
INFO 2026-06-03 20:01:55 SinglePassSamProgram Processed 335,000,000 records. Elapsed time: 00:09:12s. Time for last 1,000,000: 1s. Last read position: chr15:72,207,156
INFO 2026-06-03 20:01:56 SinglePassSamProgram Processed 336,000,000 records. Elapsed time: 00:09:14s. Time for last 1,000,000: 1s. Last read position: chr15:75,048,283
INFO 2026-06-03 20:01:58 SinglePassSamProgram Processed 337,000,000 records. Elapsed time: 00:09:16s. Time for last 1,000,000: 1s. Last read position: chr15:78,922,086
INFO 2026-06-03 20:02:00 SinglePassSamProgram Processed 338,000,000 records. Elapsed time: 00:09:17s. Time for last 1,000,000: 1s. Last read position: chr15:85,194,870
INFO 2026-06-03 20:02:02 SinglePassSamProgram Processed 339,000,000 records. Elapsed time: 00:09:19s. Time for last 1,000,000: 1s. Last read position: chr15:90,948,664
INFO 2026-06-03 20:02:03 SinglePassSamProgram Processed 340,000,000 records. Elapsed time: 00:09:21s. Time for last 1,000,000: 1s. Last read position: chr16:502,959
INFO 2026-06-03 20:02:04 SinglePassSamProgram Processed 341,000,000 records. Elapsed time: 00:09:22s. Time for last 1,000,000: 1s. Last read position: chr16:1,592,180
INFO 2026-06-03 20:02:06 SinglePassSamProgram Processed 342,000,000 records. Elapsed time: 00:09:24s. Time for last 1,000,000: 1s. Last read position: chr16:2,135,510
INFO 2026-06-03 20:02:08 SinglePassSamProgram Processed 343,000,000 records. Elapsed time: 00:09:25s. Time for last 1,000,000: 1s. Last read position: chr16:2,767,570
INFO 2026-06-03 20:02:09 SinglePassSamProgram Processed 344,000,000 records. Elapsed time: 00:09:27s. Time for last 1,000,000: 1s. Last read position: chr16:4,341,387
INFO 2026-06-03 20:02:11 SinglePassSamProgram Processed 345,000,000 records. Elapsed time: 00:09:29s. Time for last 1,000,000: 1s. Last read position: chr16:8,902,107
INFO 2026-06-03 20:02:13 SinglePassSamProgram Processed 346,000,000 records. Elapsed time: 00:09:31s. Time for last 1,000,000: 1s. Last read position: chr16:11,927,779
INFO 2026-06-03 20:02:15 SinglePassSamProgram Processed 347,000,000 records. Elapsed time: 00:09:32s. Time for last 1,000,000: 1s. Last read position: chr16:14,921,313
INFO 2026-06-03 20:02:16 SinglePassSamProgram Processed 348,000,000 records. Elapsed time: 00:09:34s. Time for last 1,000,000: 1s. Last read position: chr16:15,137,342
INFO 2026-06-03 20:02:18 SinglePassSamProgram Processed 349,000,000 records. Elapsed time: 00:09:36s. Time for last 1,000,000: 1s. Last read position: chr16:16,323,172
INFO 2026-06-03 20:02:19 SinglePassSamProgram Processed 350,000,000 records. Elapsed time: 00:09:37s. Time for last 1,000,000: 1s. Last read position: chr16:18,318,230
INFO 2026-06-03 20:02:21 SinglePassSamProgram Processed 351,000,000 records. Elapsed time: 00:09:39s. Time for last 1,000,000: 1s. Last read position: chr16:18,401,603
INFO 2026-06-03 20:02:23 SinglePassSamProgram Processed 352,000,000 records. Elapsed time: 00:09:41s. Time for last 1,000,000: 2s. Last read position: chr16:19,537,076
INFO 2026-06-03 20:02:25 SinglePassSamProgram Processed 353,000,000 records. Elapsed time: 00:09:43s. Time for last 1,000,000: 1s. Last read position: chr16:21,405,030
INFO 2026-06-03 20:02:27 SinglePassSamProgram Processed 354,000,000 records. Elapsed time: 00:09:45s. Time for last 1,000,000: 1s. Last read position: chr16:21,836,967
INFO 2026-06-03 20:02:29 SinglePassSamProgram Processed 355,000,000 records. Elapsed time: 00:09:47s. Time for last 1,000,000: 2s. Last read position: chr16:22,485,948
INFO 2026-06-03 20:02:31 SinglePassSamProgram Processed 356,000,000 records. Elapsed time: 00:09:48s. Time for last 1,000,000: 1s. Last read position: chr16:22,535,284
INFO 2026-06-03 20:02:32 SinglePassSamProgram Processed 357,000,000 records. Elapsed time: 00:09:50s. Time for last 1,000,000: 1s. Last read position: chr16:23,687,549
INFO 2026-06-03 20:02:34 SinglePassSamProgram Processed 358,000,000 records. Elapsed time: 00:09:52s. Time for last 1,000,000: 1s. Last read position: chr16:28,403,529
INFO 2026-06-03 20:02:36 SinglePassSamProgram Processed 359,000,000 records. Elapsed time: 00:09:54s. Time for last 1,000,000: 1s. Last read position: chr16:28,843,736
INFO 2026-06-03 20:02:38 SinglePassSamProgram Processed 360,000,000 records. Elapsed time: 00:09:55s. Time for last 1,000,000: 1s. Last read position: chr16:29,384,002
INFO 2026-06-03 20:02:39 SinglePassSamProgram Processed 361,000,000 records. Elapsed time: 00:09:57s. Time for last 1,000,000: 1s. Last read position: chr16:29,541,603
INFO 2026-06-03 20:02:41 SinglePassSamProgram Processed 362,000,000 records. Elapsed time: 00:09:58s. Time for last 1,000,000: 1s. Last read position: chr16:29,807,348
INFO 2026-06-03 20:02:42 SinglePassSamProgram Processed 363,000,000 records. Elapsed time: 00:10:00s. Time for last 1,000,000: 1s. Last read position: chr16:29,861,275
INFO 2026-06-03 20:02:44 SinglePassSamProgram Processed 364,000,000 records. Elapsed time: 00:10:02s. Time for last 1,000,000: 1s. Last read position: chr16:29,991,233
INFO 2026-06-03 20:02:46 SinglePassSamProgram Processed 365,000,000 records. Elapsed time: 00:10:03s. Time for last 1,000,000: 1s. Last read position: chr16:30,223,624
INFO 2026-06-03 20:02:47 SinglePassSamProgram Processed 366,000,000 records. Elapsed time: 00:10:05s. Time for last 1,000,000: 1s. Last read position: chr16:30,665,040
INFO 2026-06-03 20:02:49 SinglePassSamProgram Processed 367,000,000 records. Elapsed time: 00:10:06s. Time for last 1,000,000: 1s. Last read position: chr16:31,076,383
INFO 2026-06-03 20:02:50 SinglePassSamProgram Processed 368,000,000 records. Elapsed time: 00:10:08s. Time for last 1,000,000: 1s. Last read position: chr16:47,155,645
INFO 2026-06-03 20:02:52 SinglePassSamProgram Processed 369,000,000 records. Elapsed time: 00:10:09s. Time for last 1,000,000: 1s. Last read position: chr16:57,154,463
INFO 2026-06-03 20:02:54 SinglePassSamProgram Processed 370,000,000 records. Elapsed time: 00:10:12s. Time for last 1,000,000: 2s. Last read position: chr16:66,742,570
INFO 2026-06-03 20:02:56 SinglePassSamProgram Processed 371,000,000 records. Elapsed time: 00:10:13s. Time for last 1,000,000: 1s. Last read position: chr16:67,930,933
INFO 2026-06-03 20:02:57 SinglePassSamProgram Processed 372,000,000 records. Elapsed time: 00:10:15s. Time for last 1,000,000: 1s. Last read position: chr16:69,447,184
INFO 2026-06-03 20:02:58 SinglePassSamProgram Processed 373,000,000 records. Elapsed time: 00:10:16s. Time for last 1,000,000: 1s. Last read position: chr16:70,664,667
INFO 2026-06-03 20:03:00 SinglePassSamProgram Processed 374,000,000 records. Elapsed time: 00:10:18s. Time for last 1,000,000: 1s. Last read position: chr16:72,798,427
INFO 2026-06-03 20:03:02 SinglePassSamProgram Processed 375,000,000 records. Elapsed time: 00:10:20s. Time for last 1,000,000: 1s. Last read position: chr16:75,656,492
INFO 2026-06-03 20:03:04 SinglePassSamProgram Processed 376,000,000 records. Elapsed time: 00:10:22s. Time for last 1,000,000: 1s. Last read position: chr16:85,710,150
INFO 2026-06-03 20:03:06 SinglePassSamProgram Processed 377,000,000 records. Elapsed time: 00:10:23s. Time for last 1,000,000: 1s. Last read position: chr16:89,290,740
INFO 2026-06-03 20:03:07 SinglePassSamProgram Processed 378,000,000 records. Elapsed time: 00:10:25s. Time for last 1,000,000: 1s. Last read position: chr17:710,583
INFO 2026-06-03 20:03:09 SinglePassSamProgram Processed 379,000,000 records. Elapsed time: 00:10:27s. Time for last 1,000,000: 1s. Last read position: chr17:1,683,569
INFO 2026-06-03 20:03:11 SinglePassSamProgram Processed 380,000,000 records. Elapsed time: 00:10:29s. Time for last 1,000,000: 1s. Last read position: chr17:3,885,578
INFO 2026-06-03 20:03:13 SinglePassSamProgram Processed 381,000,000 records. Elapsed time: 00:10:30s. Time for last 1,000,000: 1s. Last read position: chr17:5,000,283
INFO 2026-06-03 20:03:14 SinglePassSamProgram Processed 382,000,000 records. Elapsed time: 00:10:32s. Time for last 1,000,000: 1s. Last read position: chr17:7,311,601
INFO 2026-06-03 20:03:16 SinglePassSamProgram Processed 383,000,000 records. Elapsed time: 00:10:34s. Time for last 1,000,000: 1s. Last read position: chr17:7,513,659
INFO 2026-06-03 20:03:18 SinglePassSamProgram Processed 384,000,000 records. Elapsed time: 00:10:35s. Time for last 1,000,000: 1s. Last read position: chr17:7,898,530
INFO 2026-06-03 20:03:19 SinglePassSamProgram Processed 385,000,000 records. Elapsed time: 00:10:37s. Time for last 1,000,000: 1s. Last read position: chr17:15,704,263
INFO 2026-06-03 20:03:21 SinglePassSamProgram Processed 386,000,000 records. Elapsed time: 00:10:39s. Time for last 1,000,000: 1s. Last read position: chr17:17,816,608
INFO 2026-06-03 20:03:23 SinglePassSamProgram Processed 387,000,000 records. Elapsed time: 00:10:40s. Time for last 1,000,000: 1s. Last read position: chr17:27,311,559
INFO 2026-06-03 20:03:25 SinglePassSamProgram Processed 388,000,000 records. Elapsed time: 00:10:42s. Time for last 1,000,000: 1s. Last read position: chr17:28,720,018
INFO 2026-06-03 20:03:27 SinglePassSamProgram Processed 389,000,000 records. Elapsed time: 00:10:44s. Time for last 1,000,000: 1s. Last read position: chr17:30,481,244
INFO 2026-06-03 20:03:29 SinglePassSamProgram Processed 390,000,000 records. Elapsed time: 00:10:46s. Time for last 1,000,000: 1s. Last read position: chr17:35,422,484
INFO 2026-06-03 20:03:30 SinglePassSamProgram Processed 391,000,000 records. Elapsed time: 00:10:48s. Time for last 1,000,000: 1s. Last read position: chr17:36,496,340
INFO 2026-06-03 20:03:32 SinglePassSamProgram Processed 392,000,000 records. Elapsed time: 00:10:49s. Time for last 1,000,000: 1s. Last read position: chr17:38,138,333
INFO 2026-06-03 20:03:33 SinglePassSamProgram Processed 393,000,000 records. Elapsed time: 00:10:51s. Time for last 1,000,000: 1s. Last read position: chr17:38,673,900
INFO 2026-06-03 20:03:35 SinglePassSamProgram Processed 394,000,000 records. Elapsed time: 00:10:53s. Time for last 1,000,000: 1s. Last read position: chr17:39,662,282
INFO 2026-06-03 20:03:36 SinglePassSamProgram Processed 395,000,000 records. Elapsed time: 00:10:54s. Time for last 1,000,000: 1s. Last read position: chr17:39,710,341
INFO 2026-06-03 20:03:37 SinglePassSamProgram Processed 396,000,000 records. Elapsed time: 00:10:55s. Time for last 1,000,000: 1s. Last read position: chr17:39,717,337
INFO 2026-06-03 20:03:38 SinglePassSamProgram Processed 397,000,000 records. Elapsed time: 00:10:56s. Time for last 1,000,000: 1s. Last read position: chr17:39,726,576
INFO 2026-06-03 20:03:40 SinglePassSamProgram Processed 398,000,000 records. Elapsed time: 00:10:58s. Time for last 1,000,000: 1s. Last read position: chr17:40,096,381
INFO 2026-06-03 20:03:42 SinglePassSamProgram Processed 399,000,000 records. Elapsed time: 00:11:00s. Time for last 1,000,000: 1s. Last read position: chr17:40,880,756
INFO 2026-06-03 20:03:44 SinglePassSamProgram Processed 400,000,000 records. Elapsed time: 00:11:02s. Time for last 1,000,000: 2s. Last read position: chr17:41,878,134
INFO 2026-06-03 20:03:46 SinglePassSamProgram Processed 401,000,000 records. Elapsed time: 00:11:04s. Time for last 1,000,000: 2s. Last read position: chr17:42,775,451
INFO 2026-06-03 20:03:48 SinglePassSamProgram Processed 402,000,000 records. Elapsed time: 00:11:06s. Time for last 1,000,000: 2s. Last read position: chr17:44,320,050
INFO 2026-06-03 20:03:50 SinglePassSamProgram Processed 403,000,000 records. Elapsed time: 00:11:08s. Time for last 1,000,000: 1s. Last read position: chr17:45,396,270
INFO 2026-06-03 20:03:51 SinglePassSamProgram Processed 404,000,000 records. Elapsed time: 00:11:09s. Time for last 1,000,000: 1s. Last read position: chr17:47,601,660
INFO 2026-06-03 20:03:53 SinglePassSamProgram Processed 405,000,000 records. Elapsed time: 00:11:11s. Time for last 1,000,000: 1s. Last read position: chr17:50,141,345
INFO 2026-06-03 20:03:55 SinglePassSamProgram Processed 406,000,000 records. Elapsed time: 00:11:12s. Time for last 1,000,000: 1s. Last read position: chr17:50,462,492
INFO 2026-06-03 20:03:56 SinglePassSamProgram Processed 407,000,000 records. Elapsed time: 00:11:14s. Time for last 1,000,000: 1s. Last read position: chr17:56,978,184
INFO 2026-06-03 20:03:58 SinglePassSamProgram Processed 408,000,000 records. Elapsed time: 00:11:16s. Time for last 1,000,000: 1s. Last read position: chr17:59,681,355
INFO 2026-06-03 20:04:00 SinglePassSamProgram Processed 409,000,000 records. Elapsed time: 00:11:18s. Time for last 1,000,000: 2s. Last read position: chr17:62,031,514
INFO 2026-06-03 20:04:02 SinglePassSamProgram Processed 410,000,000 records. Elapsed time: 00:11:20s. Time for last 1,000,000: 2s. Last read position: chr17:64,504,274
INFO 2026-06-03 20:04:04 SinglePassSamProgram Processed 411,000,000 records. Elapsed time: 00:11:22s. Time for last 1,000,000: 1s. Last read position: chr17:68,523,745
INFO 2026-06-03 20:04:06 SinglePassSamProgram Processed 412,000,000 records. Elapsed time: 00:11:24s. Time for last 1,000,000: 2s. Last read position: chr17:75,233,081
INFO 2026-06-03 20:04:08 SinglePassSamProgram Processed 413,000,000 records. Elapsed time: 00:11:26s. Time for last 1,000,000: 1s. Last read position: chr17:75,750,249
INFO 2026-06-03 20:04:10 SinglePassSamProgram Processed 414,000,000 records. Elapsed time: 00:11:28s. Time for last 1,000,000: 1s. Last read position: chr17:76,008,385
INFO 2026-06-03 20:04:12 SinglePassSamProgram Processed 415,000,000 records. Elapsed time: 00:11:30s. Time for last 1,000,000: 2s. Last read position: chr17:76,270,329
INFO 2026-06-03 20:04:14 SinglePassSamProgram Processed 416,000,000 records. Elapsed time: 00:11:32s. Time for last 1,000,000: 1s. Last read position: chr17:78,870,898
INFO 2026-06-03 20:04:16 SinglePassSamProgram Processed 417,000,000 records. Elapsed time: 00:11:33s. Time for last 1,000,000: 1s. Last read position: chr17:80,340,276
INFO 2026-06-03 20:04:17 SinglePassSamProgram Processed 418,000,000 records. Elapsed time: 00:11:35s. Time for last 1,000,000: 1s. Last read position: chr17:81,512,253
INFO 2026-06-03 20:04:19 SinglePassSamProgram Processed 419,000,000 records. Elapsed time: 00:11:37s. Time for last 1,000,000: 1s. Last read position: chr17:81,909,311
INFO 2026-06-03 20:04:21 SinglePassSamProgram Processed 420,000,000 records. Elapsed time: 00:11:39s. Time for last 1,000,000: 1s. Last read position: chr17:82,088,530
INFO 2026-06-03 20:04:23 SinglePassSamProgram Processed 421,000,000 records. Elapsed time: 00:11:40s. Time for last 1,000,000: 1s. Last read position: chr18:214,653
INFO 2026-06-03 20:04:25 SinglePassSamProgram Processed 422,000,000 records. Elapsed time: 00:11:42s. Time for last 1,000,000: 1s. Last read position: chr18:8,706,326
INFO 2026-06-03 20:04:26 SinglePassSamProgram Processed 423,000,000 records. Elapsed time: 00:11:44s. Time for last 1,000,000: 1s. Last read position: chr18:20,984,410
INFO 2026-06-03 20:04:28 SinglePassSamProgram Processed 424,000,000 records. Elapsed time: 00:11:46s. Time for last 1,000,000: 1s. Last read position: chr18:36,124,677
INFO 2026-06-03 20:04:30 SinglePassSamProgram Processed 425,000,000 records. Elapsed time: 00:11:47s. Time for last 1,000,000: 1s. Last read position: chr18:49,929,512
INFO 2026-06-03 20:04:31 SinglePassSamProgram Processed 426,000,000 records. Elapsed time: 00:11:49s. Time for last 1,000,000: 1s. Last read position: chr18:58,335,473
INFO 2026-06-03 20:04:33 SinglePassSamProgram Processed 427,000,000 records. Elapsed time: 00:11:51s. Time for last 1,000,000: 1s. Last read position: chr18:74,513,577
INFO 2026-06-03 20:04:35 SinglePassSamProgram Processed 428,000,000 records. Elapsed time: 00:11:53s. Time for last 1,000,000: 1s. Last read position: chr19:808,691
INFO 2026-06-03 20:04:37 SinglePassSamProgram Processed 429,000,000 records. Elapsed time: 00:11:55s. Time for last 1,000,000: 1s. Last read position: chr19:1,360,888
INFO 2026-06-03 20:04:39 SinglePassSamProgram Processed 430,000,000 records. Elapsed time: 00:11:56s. Time for last 1,000,000: 1s. Last read position: chr19:1,881,264
INFO 2026-06-03 20:04:40 SinglePassSamProgram Processed 431,000,000 records. Elapsed time: 00:11:58s. Time for last 1,000,000: 1s. Last read position: chr19:2,639,745
INFO 2026-06-03 20:04:42 SinglePassSamProgram Processed 432,000,000 records. Elapsed time: 00:12:00s. Time for last 1,000,000: 1s. Last read position: chr19:4,117,520
INFO 2026-06-03 20:04:44 SinglePassSamProgram Processed 433,000,000 records. Elapsed time: 00:12:02s. Time for last 1,000,000: 1s. Last read position: chr19:5,119,831
INFO 2026-06-03 20:04:46 SinglePassSamProgram Processed 434,000,000 records. Elapsed time: 00:12:03s. Time for last 1,000,000: 1s. Last read position: chr19:6,222,626
INFO 2026-06-03 20:04:48 SinglePassSamProgram Processed 435,000,000 records. Elapsed time: 00:12:05s. Time for last 1,000,000: 1s. Last read position: chr19:7,617,649
INFO 2026-06-03 20:04:50 SinglePassSamProgram Processed 436,000,000 records. Elapsed time: 00:12:07s. Time for last 1,000,000: 2s. Last read position: chr19:9,980,680
INFO 2026-06-03 20:04:51 SinglePassSamProgram Processed 437,000,000 records. Elapsed time: 00:12:09s. Time for last 1,000,000: 1s. Last read position: chr19:10,678,652
INFO 2026-06-03 20:04:53 SinglePassSamProgram Processed 438,000,000 records. Elapsed time: 00:12:10s. Time for last 1,000,000: 1s. Last read position: chr19:11,204,205
INFO 2026-06-03 20:04:54 SinglePassSamProgram Processed 439,000,000 records. Elapsed time: 00:12:12s. Time for last 1,000,000: 1s. Last read position: chr19:12,719,138
INFO 2026-06-03 20:04:56 SinglePassSamProgram Processed 440,000,000 records. Elapsed time: 00:12:14s. Time for last 1,000,000: 1s. Last read position: chr19:13,906,382
INFO 2026-06-03 20:04:58 SinglePassSamProgram Processed 441,000,000 records. Elapsed time: 00:12:16s. Time for last 1,000,000: 1s. Last read position: chr19:14,565,794
INFO 2026-06-03 20:04:59 SinglePassSamProgram Processed 442,000,000 records. Elapsed time: 00:12:17s. Time for last 1,000,000: 1s. Last read position: chr19:15,255,308
INFO 2026-06-03 20:05:01 SinglePassSamProgram Processed 443,000,000 records. Elapsed time: 00:12:19s. Time for last 1,000,000: 1s. Last read position: chr19:16,198,032
INFO 2026-06-03 20:05:03 SinglePassSamProgram Processed 444,000,000 records. Elapsed time: 00:12:21s. Time for last 1,000,000: 1s. Last read position: chr19:17,301,019
INFO 2026-06-03 20:05:05 SinglePassSamProgram Processed 445,000,000 records. Elapsed time: 00:12:23s. Time for last 1,000,000: 1s. Last read position: chr19:18,386,179
INFO 2026-06-03 20:05:07 SinglePassSamProgram Processed 446,000,000 records. Elapsed time: 00:12:24s. Time for last 1,000,000: 1s. Last read position: chr19:19,194,094
INFO 2026-06-03 20:05:08 SinglePassSamProgram Processed 447,000,000 records. Elapsed time: 00:12:26s. Time for last 1,000,000: 1s. Last read position: chr19:29,208,081
INFO 2026-06-03 20:05:09 SinglePassSamProgram Processed 448,000,000 records. Elapsed time: 00:12:27s. Time for last 1,000,000: 1s. Last read position: chr19:34,341,996
INFO 2026-06-03 20:05:11 SinglePassSamProgram Processed 449,000,000 records. Elapsed time: 00:12:29s. Time for last 1,000,000: 1s. Last read position: chr19:35,267,822
INFO 2026-06-03 20:05:13 SinglePassSamProgram Processed 450,000,000 records. Elapsed time: 00:12:31s. Time for last 1,000,000: 2s. Last read position: chr19:35,720,662
INFO 2026-06-03 20:05:14 SinglePassSamProgram Processed 451,000,000 records. Elapsed time: 00:12:32s. Time for last 1,000,000: 1s. Last read position: chr19:36,140,045
INFO 2026-06-03 20:05:16 SinglePassSamProgram Processed 452,000,000 records. Elapsed time: 00:12:34s. Time for last 1,000,000: 1s. Last read position: chr19:38,387,054
INFO 2026-06-03 20:05:18 SinglePassSamProgram Processed 453,000,000 records. Elapsed time: 00:12:35s. Time for last 1,000,000: 1s. Last read position: chr19:39,386,068
INFO 2026-06-03 20:05:19 SinglePassSamProgram Processed 454,000,000 records. Elapsed time: 00:12:37s. Time for last 1,000,000: 1s. Last read position: chr19:40,272,804
INFO 2026-06-03 20:05:21 SinglePassSamProgram Processed 455,000,000 records. Elapsed time: 00:12:39s. Time for last 1,000,000: 1s. Last read position: chr19:41,895,475
INFO 2026-06-03 20:05:23 SinglePassSamProgram Processed 456,000,000 records. Elapsed time: 00:12:41s. Time for last 1,000,000: 1s. Last read position: chr19:42,293,118
INFO 2026-06-03 20:05:25 SinglePassSamProgram Processed 457,000,000 records. Elapsed time: 00:12:43s. Time for last 1,000,000: 1s. Last read position: chr19:44,266,855
INFO 2026-06-03 20:05:27 SinglePassSamProgram Processed 458,000,000 records. Elapsed time: 00:12:45s. Time for last 1,000,000: 2s. Last read position: chr19:45,348,796
INFO 2026-06-03 20:05:29 SinglePassSamProgram Processed 459,000,000 records. Elapsed time: 00:12:47s. Time for last 1,000,000: 2s. Last read position: chr19:45,901,564
INFO 2026-06-03 20:05:31 SinglePassSamProgram Processed 460,000,000 records. Elapsed time: 00:12:49s. Time for last 1,000,000: 1s. Last read position: chr19:47,694,463
INFO 2026-06-03 20:05:33 SinglePassSamProgram Processed 461,000,000 records. Elapsed time: 00:12:51s. Time for last 1,000,000: 1s. Last read position: chr19:48,799,791
INFO 2026-06-03 20:05:35 SinglePassSamProgram Processed 462,000,000 records. Elapsed time: 00:12:52s. Time for last 1,000,000: 1s. Last read position: chr19:49,489,854
INFO 2026-06-03 20:05:36 SinglePassSamProgram Processed 463,000,000 records. Elapsed time: 00:12:54s. Time for last 1,000,000: 1s. Last read position: chr19:49,792,994
INFO 2026-06-03 20:05:38 SinglePassSamProgram Processed 464,000,000 records. Elapsed time: 00:12:56s. Time for last 1,000,000: 2s. Last read position: chr19:50,309,165
INFO 2026-06-03 20:05:40 SinglePassSamProgram Processed 465,000,000 records. Elapsed time: 00:12:58s. Time for last 1,000,000: 2s. Last read position: chr19:53,398,014
INFO 2026-06-03 20:05:42 SinglePassSamProgram Processed 466,000,000 records. Elapsed time: 00:13:00s. Time for last 1,000,000: 1s. Last read position: chr19:54,970,003
INFO 2026-06-03 20:05:44 SinglePassSamProgram Processed 467,000,000 records. Elapsed time: 00:13:01s. Time for last 1,000,000: 1s. Last read position: chr19:55,616,583
INFO 2026-06-03 20:05:45 SinglePassSamProgram Processed 468,000,000 records. Elapsed time: 00:13:03s. Time for last 1,000,000: 1s. Last read position: chr19:57,859,408
INFO 2026-06-03 20:05:47 SinglePassSamProgram Processed 469,000,000 records. Elapsed time: 00:13:05s. Time for last 1,000,000: 1s. Last read position: chr20:396,260
INFO 2026-06-03 20:05:49 SinglePassSamProgram Processed 470,000,000 records. Elapsed time: 00:13:07s. Time for last 1,000,000: 1s. Last read position: chr20:3,471,055
INFO 2026-06-03 20:05:51 SinglePassSamProgram Processed 471,000,000 records. Elapsed time: 00:13:08s. Time for last 1,000,000: 1s. Last read position: chr20:17,614,769
INFO 2026-06-03 20:05:52 SinglePassSamProgram Processed 472,000,000 records. Elapsed time: 00:13:10s. Time for last 1,000,000: 1s. Last read position: chr20:25,217,564
INFO 2026-06-03 20:05:54 SinglePassSamProgram Processed 473,000,000 records. Elapsed time: 00:13:12s. Time for last 1,000,000: 1s. Last read position: chr20:32,762,665
INFO 2026-06-03 20:05:56 SinglePassSamProgram Processed 474,000,000 records. Elapsed time: 00:13:14s. Time for last 1,000,000: 1s. Last read position: chr20:35,280,684
INFO 2026-06-03 20:05:57 SinglePassSamProgram Processed 475,000,000 records. Elapsed time: 00:13:15s. Time for last 1,000,000: 1s. Last read position: chr20:36,500,346
INFO 2026-06-03 20:05:59 SinglePassSamProgram Processed 476,000,000 records. Elapsed time: 00:13:17s. Time for last 1,000,000: 1s. Last read position: chr20:41,165,014
INFO 2026-06-03 20:06:01 SinglePassSamProgram Processed 477,000,000 records. Elapsed time: 00:13:19s. Time for last 1,000,000: 2s. Last read position: chr20:45,327,369
INFO 2026-06-03 20:06:03 SinglePassSamProgram Processed 478,000,000 records. Elapsed time: 00:13:21s. Time for last 1,000,000: 2s. Last read position: chr20:48,745,069
INFO 2026-06-03 20:06:05 SinglePassSamProgram Processed 479,000,000 records. Elapsed time: 00:13:22s. Time for last 1,000,000: 1s. Last read position: chr20:53,582,473
INFO 2026-06-03 20:06:06 SinglePassSamProgram Processed 480,000,000 records. Elapsed time: 00:13:24s. Time for last 1,000,000: 1s. Last read position: chr20:62,139,895
INFO 2026-06-03 20:06:08 SinglePassSamProgram Processed 481,000,000 records. Elapsed time: 00:13:26s. Time for last 1,000,000: 1s. Last read position: chr20:62,813,121
INFO 2026-06-03 20:06:09 SinglePassSamProgram Processed 482,000,000 records. Elapsed time: 00:13:27s. Time for last 1,000,000: 1s. Last read position: chr20:63,708,779
INFO 2026-06-03 20:06:11 SinglePassSamProgram Processed 483,000,000 records. Elapsed time: 00:13:29s. Time for last 1,000,000: 1s. Last read position: chr21:8,213,351
INFO 2026-06-03 20:06:12 SinglePassSamProgram Processed 484,000,000 records. Elapsed time: 00:13:30s. Time for last 1,000,000: 1s. Last read position: chr21:8,214,749
INFO 2026-06-03 20:06:14 SinglePassSamProgram Processed 485,000,000 records. Elapsed time: 00:13:32s. Time for last 1,000,000: 1s. Last read position: chr21:8,258,905
INFO 2026-06-03 20:06:15 SinglePassSamProgram Processed 486,000,000 records. Elapsed time: 00:13:33s. Time for last 1,000,000: 1s. Last read position: chr21:8,260,219
INFO 2026-06-03 20:06:16 SinglePassSamProgram Processed 487,000,000 records. Elapsed time: 00:13:34s. Time for last 1,000,000: 1s. Last read position: chr21:8,397,783
INFO 2026-06-03 20:06:17 SinglePassSamProgram Processed 488,000,000 records. Elapsed time: 00:13:35s. Time for last 1,000,000: 1s. Last read position: chr21:8,441,932
INFO 2026-06-03 20:06:18 SinglePassSamProgram Processed 489,000,000 records. Elapsed time: 00:13:36s. Time for last 1,000,000: 1s. Last read position: chr21:8,442,014
INFO 2026-06-03 20:06:20 SinglePassSamProgram Processed 490,000,000 records. Elapsed time: 00:13:38s. Time for last 1,000,000: 1s. Last read position: chr21:14,966,961
INFO 2026-06-03 20:06:22 SinglePassSamProgram Processed 491,000,000 records. Elapsed time: 00:13:40s. Time for last 1,000,000: 1s. Last read position: chr21:32,762,122
INFO 2026-06-03 20:06:24 SinglePassSamProgram Processed 492,000,000 records. Elapsed time: 00:13:42s. Time for last 1,000,000: 1s. Last read position: chr21:34,792,524
INFO 2026-06-03 20:06:26 SinglePassSamProgram Processed 493,000,000 records. Elapsed time: 00:13:43s. Time for last 1,000,000: 1s. Last read position: chr21:41,245,967
INFO 2026-06-03 20:06:27 SinglePassSamProgram Processed 494,000,000 records. Elapsed time: 00:13:45s. Time for last 1,000,000: 1s. Last read position: chr21:42,733,413
INFO 2026-06-03 20:06:28 SinglePassSamProgram Processed 495,000,000 records. Elapsed time: 00:13:46s. Time for last 1,000,000: 1s. Last read position: chr21:44,326,726
INFO 2026-06-03 20:06:30 SinglePassSamProgram Processed 496,000,000 records. Elapsed time: 00:13:48s. Time for last 1,000,000: 1s. Last read position: chr21:46,391,308
INFO 2026-06-03 20:06:32 SinglePassSamProgram Processed 497,000,000 records. Elapsed time: 00:13:50s. Time for last 1,000,000: 1s. Last read position: chr22:19,963,624
INFO 2026-06-03 20:06:33 SinglePassSamProgram Processed 498,000,000 records. Elapsed time: 00:13:51s. Time for last 1,000,000: 1s. Last read position: chr22:21,970,325
INFO 2026-06-03 20:06:34 SinglePassSamProgram Processed 499,000,000 records. Elapsed time: 00:13:52s. Time for last 1,000,000: 1s. Last read position: chr22:25,039,889
INFO 2026-06-03 20:06:36 SinglePassSamProgram Processed 500,000,000 records. Elapsed time: 00:13:54s. Time for last 1,000,000: 1s. Last read position: chr22:29,299,622
INFO 2026-06-03 20:06:38 SinglePassSamProgram Processed 501,000,000 records. Elapsed time: 00:13:55s. Time for last 1,000,000: 1s. Last read position: chr22:31,125,842
INFO 2026-06-03 20:06:39 SinglePassSamProgram Processed 502,000,000 records. Elapsed time: 00:13:57s. Time for last 1,000,000: 1s. Last read position: chr22:36,288,309
INFO 2026-06-03 20:06:41 SinglePassSamProgram Processed 503,000,000 records. Elapsed time: 00:13:59s. Time for last 1,000,000: 1s. Last read position: chr22:37,724,775
INFO 2026-06-03 20:06:43 SinglePassSamProgram Processed 504,000,000 records. Elapsed time: 00:14:01s. Time for last 1,000,000: 2s. Last read position: chr22:38,699,911
INFO 2026-06-03 20:06:45 SinglePassSamProgram Processed 505,000,000 records. Elapsed time: 00:14:03s. Time for last 1,000,000: 1s. Last read position: chr22:40,857,113
INFO 2026-06-03 20:06:46 SinglePassSamProgram Processed 506,000,000 records. Elapsed time: 00:14:04s. Time for last 1,000,000: 1s. Last read position: chr22:42,214,151
INFO 2026-06-03 20:06:47 SinglePassSamProgram Processed 507,000,000 records. Elapsed time: 00:14:05s. Time for last 1,000,000: 1s. Last read position: chr22:45,550,510
INFO 2026-06-03 20:06:49 SinglePassSamProgram Processed 508,000,000 records. Elapsed time: 00:14:07s. Time for last 1,000,000: 1s. Last read position: chr22:50,278,616
INFO 2026-06-03 20:06:51 SinglePassSamProgram Processed 509,000,000 records. Elapsed time: 00:14:09s. Time for last 1,000,000: 2s. Last read position: chr22:50,731,054
INFO 2026-06-03 20:06:53 SinglePassSamProgram Processed 510,000,000 records. Elapsed time: 00:14:11s. Time for last 1,000,000: 2s. Last read position: chrX:8,466,267
INFO 2026-06-03 20:06:55 SinglePassSamProgram Processed 511,000,000 records. Elapsed time: 00:14:12s. Time for last 1,000,000: 1s. Last read position: chrX:24,055,006
INFO 2026-06-03 20:06:56 SinglePassSamProgram Processed 512,000,000 records. Elapsed time: 00:14:14s. Time for last 1,000,000: 1s. Last read position: chrX:43,711,917
INFO 2026-06-03 20:06:58 SinglePassSamProgram Processed 513,000,000 records. Elapsed time: 00:14:16s. Time for last 1,000,000: 1s. Last read position: chrX:48,698,939
INFO 2026-06-03 20:06:59 SinglePassSamProgram Processed 514,000,000 records. Elapsed time: 00:14:17s. Time for last 1,000,000: 1s. Last read position: chrX:52,192,102
INFO 2026-06-03 20:07:01 SinglePassSamProgram Processed 515,000,000 records. Elapsed time: 00:14:18s. Time for last 1,000,000: 1s. Last read position: chrX:53,580,985
INFO 2026-06-03 20:07:03 SinglePassSamProgram Processed 516,000,000 records. Elapsed time: 00:14:20s. Time for last 1,000,000: 1s. Last read position: chrX:69,616,619
INFO 2026-06-03 20:07:04 SinglePassSamProgram Processed 517,000,000 records. Elapsed time: 00:14:22s. Time for last 1,000,000: 1s. Last read position: chrX:74,592,741
INFO 2026-06-03 20:07:05 SinglePassSamProgram Processed 518,000,000 records. Elapsed time: 00:14:23s. Time for last 1,000,000: 1s. Last read position: chrX:101,625,207
INFO 2026-06-03 20:07:07 SinglePassSamProgram Processed 519,000,000 records. Elapsed time: 00:14:25s. Time for last 1,000,000: 1s. Last read position: chrX:119,930,106
INFO 2026-06-03 20:07:09 SinglePassSamProgram Processed 520,000,000 records. Elapsed time: 00:14:26s. Time for last 1,000,000: 1s. Last read position: chrX:147,921,969
INFO 2026-06-03 20:07:10 SinglePassSamProgram Processed 521,000,000 records. Elapsed time: 00:14:28s. Time for last 1,000,000: 1s. Last read position: chrX:153,956,719
INFO 2026-06-03 20:07:12 SinglePassSamProgram Processed 522,000,000 records. Elapsed time: 00:14:30s. Time for last 1,000,000: 1s. Last read position: chrX:155,051,702
INFO 2026-06-03 20:07:14 SinglePassSamProgram Processed 523,000,000 records. Elapsed time: 00:14:32s. Time for last 1,000,000: 1s. Last read position: GL000220.1:114,151
INFO 2026-06-03 20:07:15 SinglePassSamProgram Processed 524,000,000 records. Elapsed time: 00:14:33s. Time for last 1,000,000: 1s. Last read position: GL000220.1:115,551
INFO 2026-06-03 20:07:17 SinglePassSamProgram Processed 525,000,000 records. Elapsed time: 00:14:35s. Time for last 1,000,000: 1s. Last read position: GL000220.1:158,121
INFO 2026-06-03 20:07:18 SinglePassSamProgram Processed 526,000,000 records. Elapsed time: 00:14:36s. Time for last 1,000,000: 1s. Last read position: GL000220.1:159,460
INFO 2026-06-03 20:07:19 SinglePassSamProgram Processed 527,000,000 records. Elapsed time: 00:14:37s. Time for last 1,000,000: 1s. Last read position: KI270733.1:129,737
INFO 2026-06-03 20:07:20 SinglePassSamProgram Processed 528,000,000 records. Elapsed time: 00:14:38s. Time for last 1,000,000: 1s. Last read position: KI270733.1:131,041
INFO 2026-06-03 20:07:22 SinglePassSamProgram Processed 529,000,000 records. Elapsed time: 00:14:40s. Time for last 1,000,000: 1s. Last read position: KI270733.1:168,888
INFO 2026-06-03 20:07:24 SinglePassSamProgram Processed 530,000,000 records. Elapsed time: 00:14:42s. Time for last 1,000,000: 1s. Last read position: KI270733.1:176,099
INFO 2026-06-03 20:07:26 SinglePassSamProgram Processed 531,000,000 records. Elapsed time: 00:14:43s. Time for last 1,000,000: 1s. Last read position: KI270733.1:178,721
INFO 2026-06-03 20:07:26 RExecutor Executing R script via command: Rscript /tmp/script17374853999715746107.R /tmp/nxf.XXXXzoYWYV/aih-tih-sc-3abdf4-R1_A23YTGFLT4_1_collectinsertsize.txt /tmp/nxf.XXXXzoYWYV/aih-tih-sc-3abdf4-R1_A23YTGFLT4_1_collectinsertsize.pdf aih-tih-sc-3abdf4-R1_A23YTGFLT4_1.Aligned.sortedByCoord.out.bam
ERROR 2026-06-03 20:07:26 ProcessExecutor /bin/sh: warning: setlocale: LC_ALL: cannot change locale (en_US.UTF-8)
ERROR 2026-06-03 20:07:26 ProcessExecutor sh: warning: setlocale: LC_ALL: cannot change locale (en_US.UTF-8)
ERROR 2026-06-03 20:07:27 ProcessExecutor sh: warning: setlocale: LC_ALL: cannot change locale (en_US.UTF-8)
ERROR 2026-06-03 20:07:27 ProcessExecutor During startup - Warning messages:
ERROR 2026-06-03 20:07:27 ProcessExecutor 1: Setting LC_CTYPE failed, using "C"
ERROR 2026-06-03 20:07:27 ProcessExecutor 2: Setting LC_COLLATE failed, using "C"
ERROR 2026-06-03 20:07:27 ProcessExecutor 3: Setting LC_TIME failed, using "C"
ERROR 2026-06-03 20:07:27 ProcessExecutor 4: Setting LC_MESSAGES failed, using "C"
ERROR 2026-06-03 20:07:27 ProcessExecutor 5: Setting LC_MONETARY failed, using "C"
ERROR 2026-06-03 20:07:27 ProcessExecutor 6: Setting LC_PAPER failed, using "C"
ERROR 2026-06-03 20:07:27 ProcessExecutor 7: Setting LC_MEASUREMENT failed, using "C"
INFO 2026-06-03 20:07:27 ProcessExecutor null device
INFO 2026-06-03 20:07:27 ProcessExecutor 1
ERROR 2026-06-03 20:07:27 ProcessExecutor sh: warning: setlocale: LC_ALL: cannot change locale (en_US.UTF-8)
[Wed Jun 03 20:07:27 GMT 2026] picard.analysis.CollectInsertSizeMetrics done. Elapsed time: 14.75 minutes.
Runtime.totalMemory()=281018368