File Info

Filename
.command.log
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/b7/782e81e907ddd7157abac9846863da/.command.log
Size
6.5 KB
Task
NFCORE_RNAFUSION:RNAFUSION:FUSIONREPORT_WORKFLOW:FUSIONREPORT (aih-tih-sc-56cab8-R1_A23YTGFLT4_1)
Attempt

Content

View in new tab 
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/3b/806fc25e18531a9472e055bfa415bf/aih-tih-sc-56cab8-R1_A23YTGFLT4_1.arriba.fusions.filtered_pass_only.tsv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/b2/f092a44d48512148d9a7609371591e/aih-tih-sc-56cab8-R1_A23YTGFLT4_1.starfusion.starfusion.fusion_predictions.filtered_pass_only.tsv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/stage-e543dae6-5fea-4720-bfb6-150bf1ff20d4/82/1bfcba5045fc10a52ca200a4890a9a/dummy_file_fusioncatcher.txt
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/b7/782e81e907ddd7157abac9846863da/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/b7/782e81e907ddd7157abac9846863da/.command.run
  Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/rna/GRCh38/fusion_report_db
==> STAGING COMPLETE (6 inputs)

Running application...
CTCF--TANGO6
starfusion
arriba
GPHN--MPP5
starfusion
STX16--NPEPL1
starfusion
arriba
TLK2--AC240565.1
starfusion
AGO2--TRAPPC9
starfusion
PKD1--NPIPB12
starfusion
FAM219A--AL139008.2
starfusion
arriba
NOTCH1--DIPK1B
arriba
TVP23C--CDRT4
arriba
RBM14--RBM4
arriba
PROM1--AC108063.2
arriba
PROM1--TAPT1
arriba
PCDHGB2--PCDHGA8
arriba
PCDHGB2--PCDHGC5
arriba
PCDHGB2--PCDHGC4
arriba
PCDHGB2--PCDHGC3
arriba
PCDHGB2--PCDHGB6
arriba
PCDHGB2--PCDHGA10
arriba
PCDHGB2--PCDHGB7
arriba
PCDHGB2--PCDHGA12
arriba
PCDHGB2--PCDHGA11
arriba
PCDHGB2--PCDHGA9
arriba
PCDHA4--PCDHAC1
arriba
PCDHA4--PCDHAC2
arriba
PCDHA4--PCDHA13
arriba
CRYZL2P--SEC16B
arriba
AC092666.1--ACTR3B
arriba
AC006008.1--ACTR3B
arriba

  0%|          | 0/28 [00:00<?, ?it/s]
Processing CTCF--TANGO6:   0%|          | 0/28 [00:00<?, ?it/s]
Processing CTCF--TANGO6:   4%|▎         | 1/28 [00:00<00:03,  8.69it/s]
Processing GPHN--MPP5:   4%|▎         | 1/28 [00:00<00:03,  8.69it/s]  
Processing GPHN--MPP5:   7%|▋         | 2/28 [00:00<00:02,  9.09it/s]
Processing STX16--NPEPL1:   7%|▋         | 2/28 [00:00<00:02,  9.09it/s]
Processing STX16--NPEPL1:  11%|█         | 3/28 [00:00<00:02,  9.25it/s]
Processing TLK2--AC240565.1:  11%|█         | 3/28 [00:00<00:02,  9.25it/s]
Processing TLK2--AC240565.1:  14%|█▍        | 4/28 [00:00<00:02,  9.32it/s]
Processing AGO2--TRAPPC9:  14%|█▍        | 4/28 [00:00<00:02,  9.32it/s]   
Processing AGO2--TRAPPC9:  18%|█▊        | 5/28 [00:00<00:02,  9.37it/s]
Processing PKD1--NPIPB12:  18%|█▊        | 5/28 [00:00<00:02,  9.37it/s]
Processing PKD1--NPIPB12:  21%|██▏       | 6/28 [00:00<00:02,  9.40it/s]
Processing FAM219A--AL139008.2:  21%|██▏       | 6/28 [00:00<00:02,  9.40it/s]
Processing FAM219A--AL139008.2:  25%|██▌       | 7/28 [00:00<00:02,  9.42it/s]
Processing NOTCH1--DIPK1B:  25%|██▌       | 7/28 [00:00<00:02,  9.42it/s]     
Processing NOTCH1--DIPK1B:  29%|██▊       | 8/28 [00:00<00:02,  9.43it/s]
Processing TVP23C--CDRT4:  29%|██▊       | 8/28 [00:00<00:02,  9.43it/s] 
Processing TVP23C--CDRT4:  32%|███▏      | 9/28 [00:00<00:02,  9.44it/s]
Processing RBM14--RBM4:  32%|███▏      | 9/28 [00:00<00:02,  9.44it/s]  
Processing RBM14--RBM4:  36%|███▌      | 10/28 [00:01<00:01,  9.44it/s]
Processing PROM1--AC108063.2:  36%|███▌      | 10/28 [00:01<00:01,  9.44it/s]
Processing PROM1--AC108063.2:  39%|███▉      | 11/28 [00:01<00:01,  9.43it/s]
Processing PROM1--TAPT1:  39%|███▉      | 11/28 [00:01<00:01,  9.43it/s]     
Processing PROM1--TAPT1:  43%|████▎     | 12/28 [00:01<00:01,  9.43it/s]
Processing PCDHGB2--PCDHGA8:  43%|████▎     | 12/28 [00:01<00:01,  9.43it/s]
Processing PCDHGB2--PCDHGA8:  46%|████▋     | 13/28 [00:01<00:01,  9.43it/s]
Processing PCDHGB2--PCDHGC5:  46%|████▋     | 13/28 [00:01<00:01,  9.43it/s]
Processing PCDHGB2--PCDHGC5:  50%|█████     | 14/28 [00:01<00:01,  9.44it/s]
Processing PCDHGB2--PCDHGC4:  50%|█████     | 14/28 [00:01<00:01,  9.44it/s]
Processing PCDHGB2--PCDHGC4:  54%|█████▎    | 15/28 [00:01<00:01,  9.44it/s]
Processing PCDHGB2--PCDHGC3:  54%|█████▎    | 15/28 [00:01<00:01,  9.44it/s]
Processing PCDHGB2--PCDHGC3:  57%|█████▋    | 16/28 [00:01<00:01,  9.45it/s]
Processing PCDHGB2--PCDHGB6:  57%|█████▋    | 16/28 [00:01<00:01,  9.45it/s]
Processing PCDHGB2--PCDHGB6:  61%|██████    | 17/28 [00:01<00:01,  9.45it/s]
Processing PCDHGB2--PCDHGA10:  61%|██████    | 17/28 [00:01<00:01,  9.45it/s]
Processing PCDHGB2--PCDHGA10:  64%|██████▍   | 18/28 [00:01<00:01,  9.45it/s]
Processing PCDHGB2--PCDHGB7:  64%|██████▍   | 18/28 [00:01<00:01,  9.45it/s] 
Processing PCDHGB2--PCDHGB7:  68%|██████▊   | 19/28 [00:02<00:00,  9.45it/s]
Processing PCDHGB2--PCDHGA12:  68%|██████▊   | 19/28 [00:02<00:00,  9.45it/s]
Processing PCDHGB2--PCDHGA12:  71%|███████▏  | 20/28 [00:02<00:00,  9.45it/s]
Processing PCDHGB2--PCDHGA11:  71%|███████▏  | 20/28 [00:02<00:00,  9.45it/s]
Processing PCDHGB2--PCDHGA11:  75%|███████▌  | 21/28 [00:02<00:00,  9.44it/s]
Processing PCDHGB2--PCDHGA9:  75%|███████▌  | 21/28 [00:02<00:00,  9.44it/s] 
Processing PCDHGB2--PCDHGA9:  79%|███████▊  | 22/28 [00:02<00:00,  9.44it/s]
Processing PCDHA4--PCDHAC1:  79%|███████▊  | 22/28 [00:02<00:00,  9.44it/s] 
Processing PCDHA4--PCDHAC1:  82%|████████▏ | 23/28 [00:02<00:00,  9.44it/s]
Processing PCDHA4--PCDHAC2:  82%|████████▏ | 23/28 [00:02<00:00,  9.44it/s]
Processing PCDHA4--PCDHAC2:  86%|████████▌ | 24/28 [00:02<00:00,  9.44it/s]
Processing PCDHA4--PCDHA13:  86%|████████▌ | 24/28 [00:02<00:00,  9.44it/s]
Processing PCDHA4--PCDHA13:  89%|████████▉ | 25/28 [00:02<00:00,  9.45it/s]
Processing CRYZL2P--SEC16B:  89%|████████▉ | 25/28 [00:02<00:00,  9.45it/s]
Processing CRYZL2P--SEC16B:  93%|█████████▎| 26/28 [00:02<00:00,  9.45it/s]
Processing AC092666.1--ACTR3B:  93%|█████████▎| 26/28 [00:02<00:00,  9.45it/s]
Processing AC092666.1--ACTR3B:  96%|█████████▋| 27/28 [00:02<00:00,  9.45it/s]
Processing AC006008.1--ACTR3B:  96%|█████████▋| 27/28 [00:02<00:00,  9.45it/s]
Processing AC006008.1--ACTR3B: 100%|██████████| 28/28 [00:02<00:00,  9.45it/s]
Processing AC006008.1--ACTR3B: 100%|██████████| 28/28 [00:02<00:00,  9.41it/s]
cat: fusion_report_db/DB-timestamp.txt: No such file or directory