Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ae/631ebc4f52cb3f31ef0e92f3635291/aih-tih-sc-573e21-R1_A23YTGFLT4_1.starfusion.starfusion.fusion_predictions.filtered_pass_only.tsv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/stage-e543dae6-5fea-4720-bfb6-150bf1ff20d4/82/1bfcba5045fc10a52ca200a4890a9a/dummy_file_fusioncatcher.txt
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/cb/47793a32ccebcc2cbfb787f982bf54/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/cb/47793a32ccebcc2cbfb787f982bf54/.command.run
  Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/rna/GRCh38/fusion_report_db
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/b0/0ccbe0e4f9a654945f30ac8afec58b/aih-tih-sc-573e21-R1_A23YTGFLT4_1.arriba.fusions.filtered_pass_only.tsv
==> STAGING COMPLETE (6 inputs)

Running application...
TRRAP--SMURF1
starfusion
CNOT2--MYRFL
starfusion
RAB3IP--FRS2
starfusion
SH3KBP1--RPS6KA3
starfusion
TLK2--AC240565.1
starfusion
SEC23B--AC010183.2
starfusion
arriba
RPSAP52--HMGA2
starfusion
INPP5A--AL731769.2
starfusion
arriba
SH3KBP1--AL807740.1
arriba
SH3KBP1--AL807742.1
arriba
SEC23B--LINC02459
arriba
TVP23C--CDRT4
arriba
C1QTNF3--AMACR
arriba
STX16--NPEPL1
arriba
PPP6R3--AP003096.1
arriba
PPP6R3--GAL
arriba
LYN--TGS1
arriba
OTOAP1--SCNN1B
arriba
AC009021.2--SCNN1B
arriba
PDE4D--PSMA2P1
arriba
PDE4D--AP003497.1
arriba

  0%|          | 0/21 [00:00<?, ?it/s]
Processing TRRAP--SMURF1:   0%|          | 0/21 [00:00<?, ?it/s]
Processing TRRAP--SMURF1:   5%|▍         | 1/21 [00:00<00:02,  9.23it/s]
Processing CNOT2--MYRFL:   5%|▍         | 1/21 [00:00<00:02,  9.23it/s] 
Processing CNOT2--MYRFL:  10%|▉         | 2/21 [00:00<00:02,  9.47it/s]
Processing RAB3IP--FRS2:  10%|▉         | 2/21 [00:00<00:02,  9.47it/s]
Processing RAB3IP--FRS2:  14%|█▍        | 3/21 [00:00<00:01,  9.55it/s]
Processing SH3KBP1--RPS6KA3:  14%|█▍        | 3/21 [00:00<00:01,  9.55it/s]
Processing SH3KBP1--RPS6KA3:  19%|█▉        | 4/21 [00:00<00:01,  9.58it/s]
Processing TLK2--AC240565.1:  19%|█▉        | 4/21 [00:00<00:01,  9.58it/s]
Processing TLK2--AC240565.1:  24%|██▍       | 5/21 [00:00<00:01,  9.61it/s]
Processing SEC23B--AC010183.2:  24%|██▍       | 5/21 [00:00<00:01,  9.61it/s]
Processing SEC23B--AC010183.2:  29%|██▊       | 6/21 [00:00<00:01,  9.62it/s]
Processing RPSAP52--HMGA2:  29%|██▊       | 6/21 [00:00<00:01,  9.62it/s]    
Processing RPSAP52--HMGA2:  33%|███▎      | 7/21 [00:00<00:01,  9.62it/s]
Processing INPP5A--AL731769.2:  33%|███▎      | 7/21 [00:00<00:01,  9.62it/s]
Processing INPP5A--AL731769.2:  38%|███▊      | 8/21 [00:00<00:01,  9.63it/s]
Processing SH3KBP1--AL807740.1:  38%|███▊      | 8/21 [00:00<00:01,  9.63it/s]
Processing SH3KBP1--AL807740.1:  43%|████▎     | 9/21 [00:00<00:01,  9.63it/s]
Processing SH3KBP1--AL807742.1:  43%|████▎     | 9/21 [00:00<00:01,  9.63it/s]
Processing SH3KBP1--AL807742.1:  48%|████▊     | 10/21 [00:01<00:01,  9.63it/s]
Processing SEC23B--LINC02459:  48%|████▊     | 10/21 [00:01<00:01,  9.63it/s]  
Processing SEC23B--LINC02459:  52%|█████▏    | 11/21 [00:01<00:01,  9.64it/s]
Processing TVP23C--CDRT4:  52%|█████▏    | 11/21 [00:01<00:01,  9.64it/s]    
Processing TVP23C--CDRT4:  57%|█████▋    | 12/21 [00:01<00:00,  9.64it/s]
Processing C1QTNF3--AMACR:  57%|█████▋    | 12/21 [00:01<00:00,  9.64it/s]
Processing C1QTNF3--AMACR:  62%|██████▏   | 13/21 [00:01<00:00,  9.64it/s]
Processing STX16--NPEPL1:  62%|██████▏   | 13/21 [00:01<00:00,  9.64it/s] 
Processing STX16--NPEPL1:  67%|██████▋   | 14/21 [00:01<00:00,  9.64it/s]
Processing PPP6R3--AP003096.1:  67%|██████▋   | 14/21 [00:01<00:00,  9.64it/s]
Processing PPP6R3--AP003096.1:  71%|███████▏  | 15/21 [00:01<00:00,  9.64it/s]
Processing PPP6R3--GAL:  71%|███████▏  | 15/21 [00:01<00:00,  9.64it/s]       
Processing PPP6R3--GAL:  76%|███████▌  | 16/21 [00:01<00:00,  9.64it/s]
Processing LYN--TGS1:  76%|███████▌  | 16/21 [00:01<00:00,  9.64it/s]  
Processing LYN--TGS1:  81%|████████  | 17/21 [00:01<00:00,  9.65it/s]
Processing OTOAP1--SCNN1B:  81%|████████  | 17/21 [00:01<00:00,  9.65it/s]
Processing OTOAP1--SCNN1B:  86%|████████▌ | 18/21 [00:01<00:00,  9.65it/s]
Processing AC009021.2--SCNN1B:  86%|████████▌ | 18/21 [00:01<00:00,  9.65it/s]
Processing AC009021.2--SCNN1B:  90%|█████████ | 19/21 [00:01<00:00,  9.65it/s]
Processing PDE4D--PSMA2P1:  90%|█████████ | 19/21 [00:01<00:00,  9.65it/s]    
Processing PDE4D--PSMA2P1:  95%|█████████▌| 20/21 [00:02<00:00,  9.64it/s]
Processing PDE4D--AP003497.1:  95%|█████████▌| 20/21 [00:02<00:00,  9.64it/s]
Processing PDE4D--AP003497.1: 100%|██████████| 21/21 [00:02<00:00,  9.64it/s]
Processing PDE4D--AP003497.1: 100%|██████████| 21/21 [00:02<00:00,  9.62it/s]
cat: fusion_report_db/DB-timestamp.txt: No such file or directory