Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/d0/db0390e137cf3062481f869034d2c8/ref_annot.bed
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/bb/0a0220cc9d35dd31f9ac4206244bb3/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/bb/0a0220cc9d35dd31f9ac4206244bb3/.command.run
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/30/3cf4336b6d6237aae68dc4a0d3f4c1/aih-tih-sc-242a7d-R1_A23YTGFLT4_1.Aligned.sortedByCoord.out.bam
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/c2/68a0e4fe9b712d598a431d27357208/aih-tih-sc-242a7d-R1_A23YTGFLT4_1.Aligned.sortedByCoord.out.bam.bai
==> STAGING COMPLETE (5 inputs)

null device 
          1 
null device 
          1 
total = 249797521
[W::hts_idx_load3] The index file is older than the data file: aih-tih-sc-242a7d-R1_A23YTGFLT4_1.Aligned.sortedByCoord.out.bam.bai
Reading reference bed file:  ref_annot.bed  ...  Done
Load BAM file ...  Done

===================================================================
Total splicing  Events:	249797521
Known Splicing Events:	246833042
Partial Novel Splicing Events:	1144326
Novel Splicing Events:	1724007
Filtered Splicing Events:	96146

Total splicing  Junctions:	304569
Known Splicing Junctions:	212994
Partial Novel Splicing Junctions:	51474
Novel Splicing Junctions:	40101

===================================================================
Create BED file ...
Create Interact file ...