Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/64/4914bdd2d85ca7910df5dbb4fadaad/aih-tih-sc-3b436b-R1_A23YTGFLT4_1.Aligned.sortedByCoord.out.bam.bai
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/d0/db0390e137cf3062481f869034d2c8/ref_annot.bed
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/72/f51c589660b81314fbe5242dbd4b5d/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/72/f51c589660b81314fbe5242dbd4b5d/.command.run
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/17/ab4cba821fe861f62653a89021cb67/aih-tih-sc-3b436b-R1_A23YTGFLT4_1.Aligned.sortedByCoord.out.bam
==> STAGING COMPLETE (5 inputs)

null device 
          1 
null device 
          1 
total = 146849751
[W::hts_idx_load3] The index file is older than the data file: aih-tih-sc-3b436b-R1_A23YTGFLT4_1.Aligned.sortedByCoord.out.bam.bai
Reading reference bed file:  ref_annot.bed  ...  Done
Load BAM file ...  Done

===================================================================
Total splicing  Events:	146849751
Known Splicing Events:	145510374
Partial Novel Splicing Events:	849382
Novel Splicing Events:	441590
Filtered Splicing Events:	48405

Total splicing  Junctions:	517370
Known Splicing Junctions:	277514
Partial Novel Splicing Junctions:	142518
Novel Splicing Junctions:	97338

===================================================================
Create BED file ...
Create Interact file ...