File Info
- Filename
- multiqc_general_stats_controls.tsv
- Full Path
- s3://natera-platform-sandbox/pipeline-outputs/cgp_runs/nextflow/dev_rna_exp0006_exp0007/A23KKJ7LT4/nfcore_rnafusion__2cae617--20260513-145008/QC/multiqc/multiqc_data/multiqc_general_stats_controls.tsv
- Size
- 2.7 KB
- Workflow Run
- dev_rna_exp06_07-2cae617
- Published
- May 16, 2026 8:17 AM
Content
View in new tab| sample_id | TOTAL_READS | EXPECTED_DISTINCT | FRAGMENT_LENGTH_MEAN | FRAGMENT_LENGTH_MEDIAN | PCT_MITO_EST_COUNTS | PCT_RIBO_EST_COUNTS | PCT_HK_EST_COUNTS | PCT_MALE_EST_COUNTS | MITOCHONDRIAL_CONTAMINATION | RIBOSOMAL_CONTAMINATION | PCT_HK_TPM | PCT_MALE_TPM | READS | FRAC_UNMAPPED | FRAC_DUPES | UNIQUE_READS | FRAC_READS_ON_TARGET | FRAC_PAIRS_ON_TARGET | FRAC_READS_OFF_TARGET | FRAC_PAIRS_OFF_TARGET | READS_ON_TARGET | PAIRS_ON_TARGET | READS_OFF_TARGET | PAIRS_OFF_TARGET | MEAN_DEPTH | Q50_DEPTH | FRAC_BASES_GT30X | FRAC_BASES_GT100X | N_Q30 | GC_BIAS | IS_CONTAMINATED | CONTAMINATION_PCT | SUMMED_MEDIAN | SUMMED_MEAN | PERCENT_DUPLICATION | PCT_RIBOSOMAL_BASES | PCT_MRNA_BASES | PROPER_PAIRS_PERCENT | UNIQUELY_MAPPED_PERCENT | MAPPED_READS | PCT_DUPLICATION | AFTER_FILTERING_Q30_RATE | AFTER_FILTERING_Q30_BASES | FILTERING_RESULT_PASSED_FILTER_READS | AFTER_FILTERING_GC_CONTENT | PCT_SURVIVING | PCT_ADAPTER | FRAGMENT_LENGTH | PERCENT_ALIGNED | PSEUDOALIGNED_READS | PERCENT_DUPLICATES | PERCENT_GC | AVG_SEQUENCE_LENGTH | MEDIAN_SEQUENCE_LENGTH | PERCENT_FAILS | TOTAL_SEQUENCES |
| FFPE_HD789_02_RNA_0005_23KKJ7LT4_1 | 9999000000.0 | 339689223.0 | 177.8 | 163.0 | 0.67 | 1.53 | 0.89 | 0.0 | 1.41 | 4.4 | 1.16 | 0.0 | 593137770.0 | 0.006986 | 0.493713 | 300297853.0 | 0.706275 | 0.733275 | 0.279927 | 0.266725 | 212092951.0 | 108153992.0 | 84061344.0 | 39340401.0 | 480.93805 | 189.0 | 0.69227 | 0.581396 | 0.980838 | 0.0 | Yes | 63.78 | 204 | 384.784596 | 0.497186 | 9.999999999999999e-05 | 82.4879 | 84.64105860477112 | 94.55 | 280417816.0 | 39.1866 | 0.979649 | 81702995782.0 | 593137770.0 | 0.538679 | 98.856295 | 32.909825500000004 | |||||||||
| FFPE_HD789_02_RNA_0006_23KKJ7LT4_1 | 9999000000.0 | 330048754.0 | 169.1 | 155.0 | 0.41 | 1.44 | 0.8 | 0.0 | 0.82 | 4.1 | 1.08 | 0.0 | 592549374.0 | 0.005941 | 0.486642 | 304190045.0 | 0.762939 | 0.788445 | 0.225487 | 0.211555 | 232078550.0 | 118039383.0 | 68590963.0 | 31672227.0 | 513.696001 | 206.0 | 0.697363 | 0.589412 | 0.978544 | 0.0 | Yes | 63.95 | 196 | 398.649138 | 0.48955 | 0.00019999999999999998 | 86.78529999999999 | 86.1043375242025 | 95.05 | 281622117.0 | 39.0861 | 0.97746 | 80044041339.0 | 592549374.0 | 0.544455 | 98.758229 | 38.86648583333333 | |||||||||
| NTC_0001_0001_23KKJ7LT4_1 | 9999000000.0 | 116915.0 | 40.6 | 31.0 | 0.01 | 0.01 | 0.0 | 0.0 | 0.02 | 0.01 | 0.0 | 0.0 | 811668.0 | 0.570937 | 0.351948 | 526003.0 | 0.003376 | 0.028465 | 0.115619 | 0.971535 | 1776.0 | 850.0 | 60816.0 | 29011.0 | 0.000587 | 0.0 | 0.0 | 0.0 | 0.925563 | 0.0 | Skipped | N/A | 22 | 24.535697 | 0.820271 | 1.9993 | 4.8069 | 2.1950878190618566 | 7.64 | 31013.0 | 74.0861 | 0.937019 | 68565999.0 | 811668.0 | 0.655729 | 6.557268449497509 | 51.517570246003 | |||||||||
| NTC_0001_0001_23KKJ7LT4_2 | 9999000000.0 | 150022.0 | 38.1 | 31.0 | 0.02 | 0.03 | 0.03 | 0.0 | 0.02 | 0.09 | 0.08 | 0.0 | 745474.0 | 0.506403 | 0.402119 | 445705.0 | 0.004274 | 0.027948 | 0.148731 | 0.972052 | 1905.0 | 913.0 | 66290.0 | 31755.0 | 0.000903 | 0.0 | 0.0 | 0.0 | 0.913633 | 0.0 | Skipped | N/A | 23 | 26.331796000000004 | 0.814669 | 2.3501000000000003 | 4.8429 | 2.1417865892211476 | 8.71 | 32480.0 | 73.369 | 0.931513 | 57962727.0 | 745474.0 | 0.64358 | 7.334173521480385 | 52.123295151012506 |
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