File Info
- Filename
- run_level_intermediate.tsv
- Full Path
- s3://natera-platform-sandbox/pipeline-outputs/cgp_runs/nextflow/dev_rna_exp0006_exp0007/A23KKJ7LT4/nfcore_rnafusion__2cae617--20260513-145008/QC_run_metrics/intermediate/run_level_intermediate.tsv
- Size
- 4.6 KB
- Workflow Run
- dev_rna_exp06_07-2cae617
- Published
- May 16, 2026 8:18 AM
Content
View in new tab| SAMPLE_ID | SOURCE_QC | ANALYTE | PIPELINE_VERSION | QC_METRIC | VALUE | METRIC_ORIGIN |
| RUN | RNA | rnafusion_3.0.2-gunknown | CLUSTER_DENSITY | 9457.29 | bclconvert | |
| RUN | RNA | rnafusion_3.0.2-gunknown | READS_PASSING_FILTER_PERCENT | 83.8793 | bclconvert | |
| RUN | RNA | rnafusion_3.0.2-gunknown | Q30_RUN_WIDE_PERCENT | 94.4582 | bclconvert | |
| RUN | RNA | rnafusion_3.0.2-gunknown | OCCUPANCY_RATE | 93.7149 | bclconvert | |
| RUN | RNA | rnafusion_3.0.2-gunknown | YIELD_IN_GB | 10333.642346728 | bclconvert | |
| NTC_0001_0001_23KKJ7LT4_1 | NTC | RNA | rnafusion_3.0.2-gunknown | READS | 6189071 | bclconvert |
| FFPE_HD789_02_RNA_0005_23KKJ7LT4_1 | HD789 | RNA | rnafusion_3.0.2-gunknown | READS | 532396900 | bclconvert |
| NTC_0001_0001_23KKJ7LT4_2 | NTC | RNA | rnafusion_3.0.2-gunknown | READS | 5082195 | bclconvert |
| FFPE_HD789_02_RNA_0006_23KKJ7LT4_1 | HD789 | RNA | rnafusion_3.0.2-gunknown | READS | 557577503 | bclconvert |
| FFPE_HD789_02_RNA_0005_23KKJ7LT4_1 | HD789 | RNA | rnafusion_3.0.2-gunknown | READS_SEQTOOLS | 593137770.0 | seqtools |
| FFPE_HD789_02_RNA_0005_23KKJ7LT4_1 | HD789 | RNA | rnafusion_3.0.2-gunknown | FRAC_READS_ON_TARGET | 0.706275 | seqtools |
| FFPE_HD789_02_RNA_0005_23KKJ7LT4_1 | HD789 | RNA | rnafusion_3.0.2-gunknown | FRAC_PAIRS_ON_TARGET | 0.733275 | seqtools |
| FFPE_HD789_02_RNA_0005_23KKJ7LT4_1 | HD789 | RNA | rnafusion_3.0.2-gunknown | FRAC_READS_OFF_TARGET | 0.279927 | seqtools |
| FFPE_HD789_02_RNA_0005_23KKJ7LT4_1 | HD789 | RNA | rnafusion_3.0.2-gunknown | FRAC_PAIRS_OFF_TARGET | 0.266725 | seqtools |
| FFPE_HD789_02_RNA_0005_23KKJ7LT4_1 | HD789 | RNA | rnafusion_3.0.2-gunknown | READS_ON_TARGET | 212092951.0 | seqtools |
| FFPE_HD789_02_RNA_0005_23KKJ7LT4_1 | HD789 | RNA | rnafusion_3.0.2-gunknown | PAIRS_ON_TARGET | 108153992.0 | seqtools |
| FFPE_HD789_02_RNA_0005_23KKJ7LT4_1 | HD789 | RNA | rnafusion_3.0.2-gunknown | READS_OFF_TARGET | 84061344.0 | seqtools |
| FFPE_HD789_02_RNA_0005_23KKJ7LT4_1 | HD789 | RNA | rnafusion_3.0.2-gunknown | PAIRS_OFF_TARGET | 39340401.0 | seqtools |
| FFPE_HD789_02_RNA_0005_23KKJ7LT4_1 | HD789 | RNA | rnafusion_3.0.2-gunknown | GC_BIAS | 0.0 | seqtools |
| FFPE_HD789_02_RNA_0005_23KKJ7LT4_1 | HD789 | RNA | rnafusion_3.0.2-gunknown | MAPPED_READS | 280417816.0 | star |
| FFPE_HD789_02_RNA_0005_23KKJ7LT4_1 | HD789 | RNA | rnafusion_3.0.2-gunknown | FRAC_UNMAPPED | 0.006986 | star |
| FFPE_HD789_02_RNA_0005_23KKJ7LT4_1 | HD789 | RNA | rnafusion_3.0.2-gunknown | FRAGMENT_LENGTH_MEDIAN | 163.0 | kallisto |
| FFPE_HD789_02_RNA_0005_23KKJ7LT4_1 | HD789 | RNA | rnafusion_3.0.2-gunknown | MITOCHONDRIAL_CONTAMINATION | 1.41 | kallisto |
| FFPE_HD789_02_RNA_0005_23KKJ7LT4_1 | HD789 | RNA | rnafusion_3.0.2-gunknown | RIBOSOMAL_CONTAMINATION | 4.4 | kallisto |
| FFPE_HD789_02_RNA_0005_23KKJ7LT4_1 | HD789 | RNA | rnafusion_3.0.2-gunknown | PCT_CONTAMINATION | 63.78 | contamination |
| FFPE_HD789_02_RNA_0006_23KKJ7LT4_1 | HD789 | RNA | rnafusion_3.0.2-gunknown | READS_SEQTOOLS | 592549374.0 | seqtools |
| FFPE_HD789_02_RNA_0006_23KKJ7LT4_1 | HD789 | RNA | rnafusion_3.0.2-gunknown | FRAC_READS_ON_TARGET | 0.762939 | seqtools |
| FFPE_HD789_02_RNA_0006_23KKJ7LT4_1 | HD789 | RNA | rnafusion_3.0.2-gunknown | FRAC_PAIRS_ON_TARGET | 0.788445 | seqtools |
| FFPE_HD789_02_RNA_0006_23KKJ7LT4_1 | HD789 | RNA | rnafusion_3.0.2-gunknown | FRAC_READS_OFF_TARGET | 0.225487 | seqtools |
| FFPE_HD789_02_RNA_0006_23KKJ7LT4_1 | HD789 | RNA | rnafusion_3.0.2-gunknown | FRAC_PAIRS_OFF_TARGET | 0.211555 | seqtools |
| FFPE_HD789_02_RNA_0006_23KKJ7LT4_1 | HD789 | RNA | rnafusion_3.0.2-gunknown | READS_ON_TARGET | 232078550.0 | seqtools |
| FFPE_HD789_02_RNA_0006_23KKJ7LT4_1 | HD789 | RNA | rnafusion_3.0.2-gunknown | PAIRS_ON_TARGET | 118039383.0 | seqtools |
| FFPE_HD789_02_RNA_0006_23KKJ7LT4_1 | HD789 | RNA | rnafusion_3.0.2-gunknown | READS_OFF_TARGET | 68590963.0 | seqtools |
| FFPE_HD789_02_RNA_0006_23KKJ7LT4_1 | HD789 | RNA | rnafusion_3.0.2-gunknown | PAIRS_OFF_TARGET | 31672227.0 | seqtools |
| FFPE_HD789_02_RNA_0006_23KKJ7LT4_1 | HD789 | RNA | rnafusion_3.0.2-gunknown | GC_BIAS | 0.0 | seqtools |
| FFPE_HD789_02_RNA_0006_23KKJ7LT4_1 | HD789 | RNA | rnafusion_3.0.2-gunknown | MAPPED_READS | 281622117.0 | star |
| FFPE_HD789_02_RNA_0006_23KKJ7LT4_1 | HD789 | RNA | rnafusion_3.0.2-gunknown | FRAC_UNMAPPED | 0.005941 | star |
| FFPE_HD789_02_RNA_0006_23KKJ7LT4_1 | HD789 | RNA | rnafusion_3.0.2-gunknown | FRAGMENT_LENGTH_MEDIAN | 155.0 | kallisto |
| FFPE_HD789_02_RNA_0006_23KKJ7LT4_1 | HD789 | RNA | rnafusion_3.0.2-gunknown | MITOCHONDRIAL_CONTAMINATION | 0.82 | kallisto |
| FFPE_HD789_02_RNA_0006_23KKJ7LT4_1 | HD789 | RNA | rnafusion_3.0.2-gunknown | RIBOSOMAL_CONTAMINATION | 4.1 | kallisto |
| FFPE_HD789_02_RNA_0006_23KKJ7LT4_1 | HD789 | RNA | rnafusion_3.0.2-gunknown | PCT_CONTAMINATION | 63.95 | contamination |
| NTC_0001_0001_23KKJ7LT4_1 | NTC | RNA | rnafusion_3.0.2-gunknown | READS_SEQTOOLS | 811668.0 | seqtools |
| NTC_0001_0001_23KKJ7LT4_2 | NTC | RNA | rnafusion_3.0.2-gunknown | READS_SEQTOOLS | 745474.0 | seqtools |
| FFPE_HD789_02_RNA_0005_23KKJ7LT4_1 | HD789 | RNA | rnafusion_3.0.2-gunknown | NUMBER_ALL_RNA_FUSIONS | 49 | fusion |
| FFPE_HD789_02_RNA_0005_23KKJ7LT4_1 | HD789 | RNA | rnafusion_3.0.2-gunknown | NUMBER_TRUE_RNA_FUSIONS | 0 | fusion |
| FFPE_HD789_02_RNA_0005_23KKJ7LT4_1 | HD789 | RNA | rnafusion_3.0.2-gunknown | NUMBER_FALSE_RNA_FUSIONS | 49 | fusion |
47 rows