Lane,SampleID,Index,# Reads,# Perfect Index Reads,# One Mismatch Index Reads,# Two Mismatch Index Reads,% Reads,% Perfect Index Reads,% One Mismatch Index Reads,% Two Mismatch Index Reads
5,tih_rna_sample_00044_23KKJ7LT4_1,GCGCGGTTAA-AAGCTATAGC,79620684,78395149,1225535,0,0.0187,0.9846,0.0154,0.0000
5,FFPE_V4_0001_RNA_0002_23KKJ7LT4_1,TTCCTTGAGG-TAAGACAGCA,71536930,70500466,1036464,0,0.0168,0.9855,0.0145,0.0000
5,tih_rna_sample_00208_23KKJ7LT4_1,GAGTCGCTTC-AGCGAAGATT,96620635,95030404,1590231,0,0.0227,0.9835,0.0165,0.0000
5,tih_rna_sample_00045_23KKJ7LT4_1,GTACGCTCAA-ATTGATGGCG,82228903,81022791,1206112,0,0.0193,0.9853,0.0147,0.0000
5,tih_rna_sample_00046_23KKJ7LT4_1,TAGAAGATCG-CGACCAGTGT,78918170,77160239,1757931,0,0.0186,0.9777,0.0223,0.0000
5,tih_rna_sample_00047_23KKJ7LT4_1,AACCTAGTGC-TACAGGTCCT,103223830,101845509,1378321,0,0.0243,0.9866,0.0134,0.0000
5,tih_rna_sample_00048_23KKJ7LT4_1,CGTGTATGTC-GCATCTCTAT,84180761,83102773,1077988,0,0.0198,0.9872,0.0128,0.0000
5,tih_rna_sample_00216_23KKJ7LT4_1,TTCAGATCCA-TGGCATTGGA,17331465,17072732,258733,0,0.0041,0.9851,0.0149,0.0000
5,tih_rna_sample_00050_23KKJ7LT4_1,CTCACCAGTT-TTGGTGTGTC,93661684,91963754,1697930,0,0.0220,0.9819,0.0181,0.0000
5,tih_rna_sample_00051_23KKJ7LT4_1,ACTAGTAGTC-ACGTACACTC,97916073,96631143,1284930,0,0.0230,0.9869,0.0131,0.0000
5,tih_rna_sample_00052_23KKJ7LT4_1,AATAGACTGC-TCAAGGTCGC,120398222,118540452,1857770,0,0.0283,0.9846,0.0154,0.0000
5,tih_rna_sample_00053_23KKJ7LT4_1,ATGATCAACG-GTATAGCGTC,41802432,41161536,640896,0,0.0098,0.9847,0.0153,0.0000
5,tih_rna_sample_00054_23KKJ7LT4_1,TAGGAAGCGG-CCAATCCAGG,18026217,17758920,267297,0,0.0042,0.9852,0.0148,0.0000
5,NTC_0001_0001_23KKJ7LT4_2,GCATCCTACT-GACATCGCGA,1236072,1213605,22467,0,0.0003,0.9818,0.0182,0.0000
5,tih_rna_sample_00056_23KKJ7LT4_1,AGTCCAGCGT-TGTCGTATTG,69279881,68173948,1105933,0,0.0163,0.9840,0.0160,0.0000
5,tih_rna_sample_00057_23KKJ7LT4_1,AGGCAGCCAT-GAGTGTCTAG,11246297,11071240,175057,0,0.0026,0.9844,0.0156,0.0000
5,tih_rna_sample_00058_23KKJ7LT4_1,GCGACTCGTA-CAGGCCATGT,76521246,74571082,1950164,0,0.0180,0.9745,0.0255,0.0000
5,tih_rna_sample_00219_23KKJ7LT4_1,GTATCTGAGG-ACGTATCTTG,84208118,83180234,1027884,0,0.0198,0.9878,0.0122,0.0000
5,tih_rna_sample_00060_23KKJ7LT4_1,CATCACCTAA-TGGTGGTATT,57465219,55820473,1644746,0,0.0135,0.9714,0.0286,0.0000
5,tih_rna_sample_00061_23KKJ7LT4_1,CGGCATATAC-ATGAGCTGGA,98128473,96661222,1467251,0,0.0231,0.9850,0.0150,0.0000
5,tih_rna_sample_00223_23KKJ7LT4_1,CACGAGTGTC-TAGGCTAGAG,103944473,102658846,1285627,0,0.0245,0.9876,0.0124,0.0000
5,tih_rna_sample_00063_23KKJ7LT4_1,CGGAGACTAT-ATGCTTCTAC,110812216,108893245,1918971,0,0.0261,0.9827,0.0173,0.0000
5,tih_rna_sample_00064_23KKJ7LT4_1,AAGGTGTTAG-TGTGCTGGTG,140760477,138517425,2243052,0,0.0331,0.9841,0.0159,0.0000
5,FFPE_HD789_02_RNA_0006_23KKJ7LT4_1,GCGATGGAAG-GCCGCAAGAT,141941391,139808362,2133029,0,0.0334,0.9850,0.0150,0.0000
5,tih_rna_sample_00224_23KKJ7LT4_1,ACGGTCGCAT-GTACTCTCTA,80237268,79120647,1116621,0,0.0189,0.9861,0.0139,0.0000
5,tih_rna_sample_00225_23KKJ7LT4_1,TTACACACGG-AACTCCGAGA,117108626,115479112,1629514,0,0.0276,0.9861,0.0139,0.0000
5,tih_rna_sample_00066_23KKJ7LT4_1,CGAGATTAGA-CTAATCGCGG,83296344,81783807,1512537,0,0.0196,0.9818,0.0182,0.0000
5,tih_rna_sample_00226_23KKJ7LT4_1,CAAGGATCGA-GCAGACACAA,79561504,78431418,1130086,0,0.0187,0.9858,0.0142,0.0000
5,tih_rna_sample_00068_23KKJ7LT4_1,ACAACACACA-CATCGGCACT,86111373,84943759,1167614,0,0.0203,0.9864,0.0136,0.0000
5,tih_rna_sample_00239_23KKJ7LT4_1,AAGAGCTCGC-CCAATAGATC,70913141,69917438,995703,0,0.0167,0.9860,0.0140,0.0000
5,tih_rna_sample_00070_23KKJ7LT4_1,ACAGAGGCGT-GACATATCGG,94943344,93553635,1389709,0,0.0223,0.9854,0.0146,0.0000
5,tih_rna_sample_00071_23KKJ7LT4_1,AACTGTACGG-CTCCAATATG,105442793,103773021,1669772,0,0.0248,0.9842,0.0158,0.0000
5,tih_rna_sample_00072_23KKJ7LT4_1,GCGAAGTAGG-ACCATTGTGT,113683668,112177066,1506602,0,0.0267,0.9867,0.0133,0.0000
5,tih_rna_sample_00073_23KKJ7LT4_1,GTGAAGACAC-TGGCTTGATC,67888883,67000413,888470,0,0.0160,0.9869,0.0131,0.0000
5,tih_rna_sample_00074_23KKJ7LT4_1,GACTTAGGTC-CTATGGACTT,146247333,144537743,1709590,0,0.0344,0.9883,0.0117,0.0000
5,tih_rna_sample_00243_23KKJ7LT4_1,AGGACGGACA-GAAGTCGTGG,85292371,83802662,1489709,0,0.0201,0.9825,0.0175,0.0000
5,tih_rna_sample_00244_23KKJ7LT4_1,CCTATGTGTA-TAGTGAGTCG,106228643,104748718,1479925,0,0.0250,0.9861,0.0139,0.0000
5,tih_rna_sample_00077_23KKJ7LT4_1,CAACGTTGAC-TTGGACGGAA,81457892,80168892,1289000,0,0.0192,0.9842,0.0158,0.0000
5,tih_rna_sample_00078_23KKJ7LT4_1,TGACATAGGT-TACCAGAGAT,109298568,107958784,1339784,0,0.0257,0.9877,0.0123,0.0000
5,tih_rna_sample_00079_23KKJ7LT4_1,TTACACCAAC-ATGAGTTAGG,59320294,58474272,846022,0,0.0140,0.9857,0.0143,0.0000
5,tih_rna_sample_00080_23KKJ7LT4_1,CCTGGAATTA-CGTCATCGAA,62681051,61367547,1313504,0,0.0147,0.9790,0.0210,0.0000
5,tih_rna_sample_00081_23KKJ7LT4_1,GCAACATCAA-TGACCTAGTT,90683135,89232206,1450929,0,0.0213,0.9840,0.0160,0.0000
5,tih_rna_sample_00082_23KKJ7LT4_1,ACAGCCAGGT-TCATGGTACT,94015530,92669756,1345774,0,0.0221,0.9857,0.0143,0.0000
5,tih_rna_sample_00083_23KKJ7LT4_1,TAGTCCATCT-GACAGGACAG,83688791,82469583,1219208,0,0.0197,0.9854,0.0146,0.0000
5,tih_rna_sample_00084_23KKJ7LT4_1,GCCTCTCAGA-CGTGACGACT,43697674,42968884,728790,0,0.0103,0.9833,0.0167,0.0000
5,tih_rna_sample_00245_23KKJ7LT4_1,TAGGTTCAAG-ACTTACCGGC,128752632,127106545,1646087,0,0.0303,0.9872,0.0128,0.0000
5,tih_rna_sample_00086_23KKJ7LT4_1,AAGACTCTCG-GCTCTCCTTC,99596268,97964611,1631657,0,0.0234,0.9836,0.0164,0.0000
5,tih_rna_sample_00247_23KKJ7LT4_1,GAAGATCGAC-AGTGACCACG,54834356,54062682,771674,0,0.0129,0.9859,0.0141,0.0000
5,Undetermined,,224463395,224463395,0,0,0.0528,1.0000,0.0000,0.0000