Lane,SampleID,Index,# Reads,# Perfect Index Reads,# One Mismatch Index Reads,# Two Mismatch Index Reads,% Reads,% Perfect Index Reads,% One Mismatch Index Reads,% Two Mismatch Index Reads
3,tih_rna_sample_00001_23KKJ7LT4_1,TTGGATTGTC-CGGCTGTTAG,78134408,75944880,2189528,0,0.0180,0.9720,0.0280,0.0000
3,tih_rna_sample_00002_23KKJ7LT4_1,AATTGGCACA-CAGTCGGAGT,75885193,73843024,2042169,0,0.0175,0.9731,0.0269,0.0000
3,NTC_0001_0001_23KKJ7LT4_1,AGGCAATCGC-ATGAGTCTGT,1594142,1548842,45300,0,0.0004,0.9716,0.0284,0.0000
3,tih_rna_sample_00004_23KKJ7LT4_1,TGCAACACTA-CGTTCTGGTA,117647066,114419784,3227282,0,0.0272,0.9726,0.0274,0.0000
3,tih_rna_sample_00005_23KKJ7LT4_1,GAATCGCCTG-CATTGACGGC,50588944,49067642,1521302,0,0.0117,0.9699,0.0301,0.0000
3,tih_rna_sample_00006_23KKJ7LT4_1,TCGCATGACA-TTGGCCAATG,86521904,83934258,2587646,0,0.0200,0.9701,0.0299,0.0000
3,tih_rna_sample_00007_23KKJ7LT4_1,TCAATACGTG-GCTGCTAATA,92030315,89329170,2701145,0,0.0212,0.9706,0.0294,0.0000
3,tih_rna_sample_00008_23KKJ7LT4_1,ATTCTCCACG-TCGATGATCG,19515815,18950150,565665,0,0.0045,0.9710,0.0290,0.0000
3,tih_rna_sample_00009_23KKJ7LT4_1,TGTTACAGAG-TGTGTACCAG,101771289,98010533,3760756,0,0.0235,0.9630,0.0370,0.0000
3,tih_rna_sample_00010_23KKJ7LT4_1,TTACGGACGC-ATTGGCCAGC,104053476,101088632,2964844,0,0.0240,0.9715,0.0285,0.0000
3,tih_rna_sample_00170_23KKJ7LT4_1,CCAATGTTGA-CTTGAATGTC,72229391,70434059,1795332,0,0.0167,0.9751,0.0249,0.0000
3,tih_rna_sample_00012_23KKJ7LT4_1,CGTACTTAGA-CCGATGTTCA,91670452,89176096,2494356,0,0.0212,0.9728,0.0272,0.0000
3,tih_rna_sample_00013_23KKJ7LT4_1,GCCGTGAACA-GCACCACCAT,58570652,56746431,1824221,0,0.0135,0.9689,0.0311,0.0000
3,tih_rna_sample_00176_23KKJ7LT4_1,AGGAGACCAC-TACCACGTAG,66204915,64301920,1902995,0,0.0153,0.9713,0.0287,0.0000
3,tih_rna_sample_00015_23KKJ7LT4_1,GAAGCAAGCG-TCACCGACTA,110779027,107521266,3257761,0,0.0256,0.9706,0.0294,0.0000
3,tih_rna_sample_00016_23KKJ7LT4_1,AACGCGACTG-GACCTACGAG,56927828,55335388,1592440,0,0.0131,0.9720,0.0280,0.0000
3,tih_rna_sample_00206_23KKJ7LT4_1,TTCGCGGACT-AGAGAGTGGT,108626022,105910245,2715777,0,0.0251,0.9750,0.0250,0.0000
3,FFPE_HD789_02_RNA_0005_23KKJ7LT4_1,TCGTGACGAC-GTGACTAACT,132497851,128797250,3700601,0,0.0306,0.9721,0.0279,0.0000
3,tih_rna_sample_00179_23KKJ7LT4_1,TCAATCTAGC-TCCGAATAAG,92631708,90054602,2577106,0,0.0214,0.9722,0.0278,0.0000
3,tih_rna_sample_00020_23KKJ7LT4_1,GCGGAGTCAA-CTCTATAGCT,94180412,91550483,2629929,0,0.0217,0.9721,0.0279,0.0000
3,tih_rna_sample_00021_23KKJ7LT4_1,GATGCTAGAA-TGGATGCCAG,88780846,86501920,2278926,0,0.0205,0.9743,0.0257,0.0000
3,tih_rna_sample_00022_23KKJ7LT4_1,ACGATGGTTA-AATTGCTAGG,101290796,98387550,2903246,0,0.0234,0.9713,0.0287,0.0000
3,tih_rna_sample_00023_23KKJ7LT4_1,AGAGCAGTAT-CAAGAGGAGG,114550094,111542506,3007588,0,0.0264,0.9737,0.0263,0.0000
3,tih_rna_sample_00180_23KKJ7LT4_1,TTGTGATCCT-ATGAAGGCAT,116995310,114009074,2986236,0,0.0270,0.9745,0.0255,0.0000
3,tih_rna_sample_00234_23KKJ7LT4_1,CCACCTGCTT-TGTTACCGTC,98241383,95176717,3064666,0,0.0227,0.9688,0.0312,0.0000
3,tih_rna_sample_00030_23KKJ7LT4_1,TGGTGGTTGT-TACCTGTCAA,130116762,126818913,3297849,0,0.0300,0.9747,0.0253,0.0000
3,tih_rna_sample_00198_23KKJ7LT4_1,ACGCAACACA-CATTCAGGAG,62380041,60607090,1772951,0,0.0144,0.9716,0.0284,0.0000
3,tih_rna_sample_00032_23KKJ7LT4_1,CCAGTGCACT-CCTCCGTATC,112455787,108886353,3569434,0,0.0260,0.9683,0.0317,0.0000
3,tih_rna_sample_00200_23KKJ7LT4_1,CATCAGGCGT-CGTGTTACCG,27737269,26835138,902131,0,0.0064,0.9675,0.0325,0.0000
3,FFPE_V4_0001_RNA_0003_23KKJ7LT4_1,ATCCTAGAAC-TGAAGTCTGC,84205834,81942307,2263527,0,0.0194,0.9731,0.0269,0.0000
3,tih_rna_sample_00034_23KKJ7LT4_1,GCCTAGAGTC-ATGGTTCTCT,70817520,68838943,1978577,0,0.0163,0.9721,0.0279,0.0000
3,tih_rna_sample_00035_23KKJ7LT4_1,CTTACTCTCT-CTGCTTAAGG,77012233,74587939,2424294,0,0.0178,0.9685,0.0315,0.0000
3,tih_rna_sample_00036_23KKJ7LT4_1,CCGACAACCT-TTCTACCTGT,59157924,57430843,1727081,0,0.0137,0.9708,0.0292,0.0000
3,tih_rna_sample_00037_23KKJ7LT4_1,GATCTGTATG-ATCGAAGAGC,162874811,158430804,4444007,0,0.0376,0.9727,0.0273,0.0000
3,tih_rna_sample_00202_23KKJ7LT4_1,ATAGGCAGTG-CAGAACTTAG,127296307,123945040,3351267,0,0.0294,0.9737,0.0263,0.0000
3,tih_rna_sample_00039_23KKJ7LT4_1,GAATAGAGTG-CACAGCGTCT,103596409,100811352,2785057,0,0.0239,0.9731,0.0269,0.0000
3,tih_rna_sample_00204_23KKJ7LT4_1,GTAACAGGAA-TGTCTTCAGA,4352001,4222298,129703,0,0.0010,0.9702,0.0298,0.0000
3,tih_rna_sample_00041_23KKJ7LT4_1,ATGGTTGTTG-AGTTATGAGG,92456300,89919743,2536557,0,0.0213,0.9726,0.0274,0.0000
3,tih_rna_sample_00042_23KKJ7LT4_1,ACAATAGCAC-GTATGCCTAT,70800355,68785011,2015344,0,0.0163,0.9715,0.0285,0.0000
3,tih_rna_sample_00043_23KKJ7LT4_1,CTACAAGTTC-GCACCATGAA,94230438,91646100,2584338,0,0.0217,0.9726,0.0274,0.0000
3,tih_rna_sample_00024_23KKJ7LT4_1,TAAGATCGGA-TTCATCCGTG,82335441,80204163,2131278,0,0.0190,0.9741,0.0259,0.0000
3,tih_rna_sample_00183_23KKJ7LT4_1,TTAGTTGCTG-ATGGCGGATT,76326998,74374042,1952956,0,0.0176,0.9744,0.0256,0.0000
3,tih_rna_sample_00025_23KKJ7LT4_1,AGTCAGATGC-CTCACACACT,84318472,81793463,2525009,0,0.0195,0.9701,0.0299,0.0000
3,tih_rna_sample_00184_23KKJ7LT4_1,AGTACAACTG-CATTGAGTTC,121756848,118418787,3338061,0,0.0281,0.9726,0.0274,0.0000
3,tih_rna_sample_00027_23KKJ7LT4_1,CTTAGTACGC-GCTACAACGA,79882286,77566083,2316203,0,0.0184,0.9710,0.0290,0.0000
3,tih_rna_sample_00185_23KKJ7LT4_1,GTACGCATCG-GAGTTGTTCA,73231273,71003183,2228090,0,0.0169,0.9696,0.0304,0.0000
3,tih_rna_sample_00186_23KKJ7LT4_1,ACTTCCGTTC-CAATTCCGTG,115132071,112030777,3101294,0,0.0266,0.9731,0.0269,0.0000
3,tih_rna_sample_00207_23KKJ7LT4_1,AACCTGATCT-ATTCCGTCCG,79418348,77180632,2237716,0,0.0183,0.9718,0.0282,0.0000
3,Undetermined,,209169038,209169038,0,0,0.0483,1.0000,0.0000,0.0000