SampleID,Lanes,Index,# Reads,# Perfect Index Reads,# One Mismatch Index Reads,# Two Mismatch Index Reads,% Reads,% Perfect Index Reads,% One Mismatch Index Reads,% Two Mismatch Index Reads
FFPE_HD789_02_RNA_0005_23KKJ7LT4_1,"1,2,3,4",TCGTGACGAC-GTGACTAACT,532396900,521141630,11255270,0,0.0156,0.9789,0.0211,0.0
FFPE_HD789_02_RNA_0006_23KKJ7LT4_1,"5,6,7,8",GCGATGGAAG-GCCGCAAGAT,557577503,548236992,9340511,0,0.0163,0.9832,0.0168,0.0
FFPE_V4_0001_RNA_0002_23KKJ7LT4_1,"5,6,7,8",TTCCTTGAGG-TAAGACAGCA,281866641,277299747,4566894,0,0.0082,0.9838,0.0162,0.0
FFPE_V4_0001_RNA_0003_23KKJ7LT4_1,"1,2,3,4",ATCCTAGAAC-TGAAGTCTGC,337919946,331268294,6651652,0,0.0099,0.9803,0.0197,0.0
NTC_0001_0001_23KKJ7LT4_1,"1,2,3,4",AGGCAATCGC-ATGAGTCTGT,6189071,6056140,132931,0,0.0002,0.9785,0.0215,0.0
NTC_0001_0001_23KKJ7LT4_2,"5,6,7,8",GCATCCTACT-GACATCGCGA,5082195,4980129,102066,0,0.0001,0.9799,0.0201,0.0
Undetermined,"1,2,3,4,5,6,7,8",,1741064015,1741064015,0,0,0.0509,1.0,0.0,0.0
tih_rna_sample_00001_23KKJ7LT4_1,"1,2,3,4",TTGGATTGTC-CGGCTGTTAG,310543760,303645455,6898305,0,0.0091,0.9778,0.0222,0.0
tih_rna_sample_00002_23KKJ7LT4_1,"1,2,3,4",AATTGGCACA-CAGTCGGAGT,302295148,295702797,6592351,0,0.0088,0.9782,0.0218,0.0
tih_rna_sample_00004_23KKJ7LT4_1,"1,2,3,4",TGCAACACTA-CGTTCTGGTA,471348861,461169026,10179835,0,0.0138,0.9784,0.0216,0.0
tih_rna_sample_00005_23KKJ7LT4_1,"1,2,3,4",GAATCGCCTG-CATTGACGGC,199253508,194445792,4807716,0,0.0058,0.9759,0.0241,0.0
tih_rna_sample_00006_23KKJ7LT4_1,"1,2,3,4",TCGCATGACA-TTGGCCAATG,344539570,336786046,7753524,0,0.0101,0.9775,0.0225,0.0
tih_rna_sample_00007_23KKJ7LT4_1,"1,2,3,4",TCAATACGTG-GCTGCTAATA,366316307,358080138,8236169,0,0.0107,0.9775,0.0225,0.0
tih_rna_sample_00008_23KKJ7LT4_1,"1,2,3,4",ATTCTCCACG-TCGATGATCG,76703132,74917717,1785415,0,0.0022,0.9767,0.0233,0.0
tih_rna_sample_00009_23KKJ7LT4_1,"1,2,3,4",TGTTACAGAG-TGTGTACCAG,403554630,391631816,11922814,0,0.0118,0.9705,0.0295,0.0
tih_rna_sample_00010_23KKJ7LT4_1,"1,2,3,4",TTACGGACGC-ATTGGCCAGC,414477024,405345788,9131236,0,0.0121,0.978,0.022,0.0
tih_rna_sample_00012_23KKJ7LT4_1,"1,2,3,4",CGTACTTAGA-CCGATGTTCA,364374048,356522903,7851145,0,0.0106,0.9785,0.0215,0.0
tih_rna_sample_00013_23KKJ7LT4_1,"1,2,3,4",GCCGTGAACA-GCACCACCAT,232732903,227060473,5672430,0,0.0068,0.9756,0.0244,0.0
tih_rna_sample_00015_23KKJ7LT4_1,"1,2,3,4",GAAGCAAGCG-TCACCGACTA,442583641,432173200,10410441,0,0.0129,0.9765,0.0235,0.0
tih_rna_sample_00016_23KKJ7LT4_1,"1,2,3,4",AACGCGACTG-GACCTACGAG,225088684,220110158,4978526,0,0.0066,0.9779,0.0221,0.0
tih_rna_sample_00020_23KKJ7LT4_1,"1,2,3,4",GCGGAGTCAA-CTCTATAGCT,373865240,365612396,8252844,0,0.0109,0.9779,0.0221,0.0
tih_rna_sample_00021_23KKJ7LT4_1,"1,2,3,4",GATGCTAGAA-TGGATGCCAG,354474386,347389730,7084656,0,0.0104,0.98,0.02,0.0
tih_rna_sample_00022_23KKJ7LT4_1,"1,2,3,4",ACGATGGTTA-AATTGCTAGG,401984543,393139316,8845227,0,0.0117,0.978,0.022,0.0
tih_rna_sample_00023_23KKJ7LT4_1,"1,2,3,4",AGAGCAGTAT-CAAGAGGAGG,454849011,445549483,9299528,0,0.0133,0.9796,0.0204,0.0
tih_rna_sample_00024_23KKJ7LT4_1,"1,2,3,4",TAAGATCGGA-TTCATCCGTG,326346297,319886470,6459827,0,0.0095,0.9802,0.0198,0.0
tih_rna_sample_00025_23KKJ7LT4_1,"1,2,3,4",AGTCAGATGC-CTCACACACT,334451968,326592281,7859687,0,0.0098,0.9765,0.0235,0.0
tih_rna_sample_00027_23KKJ7LT4_1,"1,2,3,4",CTTAGTACGC-GCTACAACGA,318171899,311191686,6980213,0,0.0093,0.9781,0.0219,0.0
tih_rna_sample_00030_23KKJ7LT4_1,"1,2,3,4",TGGTGGTTGT-TACCTGTCAA,516817755,506279094,10538661,0,0.0151,0.9796,0.0204,0.0
tih_rna_sample_00032_23KKJ7LT4_1,"1,2,3,4",CCAGTGCACT-CCTCCGTATC,447307225,435470083,11837142,0,0.0131,0.9735,0.0265,0.0
tih_rna_sample_00034_23KKJ7LT4_1,"1,2,3,4",GCCTAGAGTC-ATGGTTCTCT,279840139,273836651,6003488,0,0.0082,0.9785,0.0215,0.0
tih_rna_sample_00035_23KKJ7LT4_1,"1,2,3,4",CTTACTCTCT-CTGCTTAAGG,305118187,297680850,7437337,0,0.0089,0.9756,0.0244,0.0
tih_rna_sample_00036_23KKJ7LT4_1,"1,2,3,4",CCGACAACCT-TTCTACCTGT,233562227,228311233,5250994,0,0.0068,0.9775,0.0225,0.0
tih_rna_sample_00037_23KKJ7LT4_1,"1,2,3,4",GATCTGTATG-ATCGAAGAGC,650367433,636557953,13809480,0,0.019,0.9788,0.0212,0.0
tih_rna_sample_00039_23KKJ7LT4_1,"1,2,3,4",GAATAGAGTG-CACAGCGTCT,410948151,402396512,8551639,0,0.012,0.9792,0.0208,0.0
tih_rna_sample_00041_23KKJ7LT4_1,"1,2,3,4",ATGGTTGTTG-AGTTATGAGG,368231449,360797303,7434146,0,0.0108,0.9798,0.0202,0.0
tih_rna_sample_00042_23KKJ7LT4_1,"1,2,3,4",ACAATAGCAC-GTATGCCTAT,281934345,275896423,6037922,0,0.0082,0.9786,0.0214,0.0
tih_rna_sample_00043_23KKJ7LT4_1,"1,2,3,4",CTACAAGTTC-GCACCATGAA,374486353,366651068,7835285,0,0.0109,0.9791,0.0209,0.0
tih_rna_sample_00044_23KKJ7LT4_1,"5,6,7,8",GCGCGGTTAA-AAGCTATAGC,317954016,312486480,5467536,0,0.0093,0.9828,0.0172,0.0
tih_rna_sample_00045_23KKJ7LT4_1,"5,6,7,8",GTACGCTCAA-ATTGATGGCG,329028281,323608460,5419821,0,0.0096,0.9835,0.0165,0.0
tih_rna_sample_00046_23KKJ7LT4_1,"5,6,7,8",TAGAAGATCG-CGACCAGTGT,315767719,308003519,7764200,0,0.0092,0.9754,0.0246,0.0
tih_rna_sample_00047_23KKJ7LT4_1,"5,6,7,8",AACCTAGTGC-TACAGGTCCT,413202670,406949634,6253036,0,0.0121,0.9849,0.0151,0.0
tih_rna_sample_00048_23KKJ7LT4_1,"5,6,7,8",CGTGTATGTC-GCATCTCTAT,344362858,339430041,4932817,0,0.0101,0.9857,0.0143,0.0
tih_rna_sample_00050_23KKJ7LT4_1,"5,6,7,8",CTCACCAGTT-TTGGTGTGTC,372123180,364653589,7469591,0,0.0109,0.9799,0.0201,0.0
tih_rna_sample_00051_23KKJ7LT4_1,"5,6,7,8",ACTAGTAGTC-ACGTACACTC,390469560,384666166,5803394,0,0.0114,0.9851,0.0149,0.0
tih_rna_sample_00052_23KKJ7LT4_1,"5,6,7,8",AATAGACTGC-TCAAGGTCGC,472160402,463973036,8187366,0,0.0138,0.9827,0.0173,0.0
tih_rna_sample_00053_23KKJ7LT4_1,"5,6,7,8",ATGATCAACG-GTATAGCGTC,170484623,167553824,2930799,0,0.005,0.9828,0.0172,0.0
tih_rna_sample_00054_23KKJ7LT4_1,"5,6,7,8",TAGGAAGCGG-CCAATCCAGG,72855730,71634631,1221099,0,0.0021,0.9832,0.0168,0.0
tih_rna_sample_00056_23KKJ7LT4_1,"5,6,7,8",AGTCCAGCGT-TGTCGTATTG,276847739,271896400,4951339,0,0.0081,0.9821,0.0179,0.0
tih_rna_sample_00057_23KKJ7LT4_1,"5,6,7,8",AGGCAGCCAT-GAGTGTCTAG,45492614,44701726,790888,0,0.0013,0.9826,0.0174,0.0
tih_rna_sample_00058_23KKJ7LT4_1,"5,6,7,8",GCGACTCGTA-CAGGCCATGT,305026256,296323305,8702951,0,0.0089,0.9715,0.0285,0.0
tih_rna_sample_00060_23KKJ7LT4_1,"5,6,7,8",CATCACCTAA-TGGTGGTATT,227792050,220999950,6792100,0,0.0067,0.9702,0.0298,0.0
tih_rna_sample_00061_23KKJ7LT4_1,"5,6,7,8",CGGCATATAC-ATGAGCTGGA,386753154,380271207,6481947,0,0.0113,0.9832,0.0168,0.0
tih_rna_sample_00063_23KKJ7LT4_1,"5,6,7,8",CGGAGACTAT-ATGCTTCTAC,439708323,431227042,8481281,0,0.0129,0.9807,0.0193,0.0
tih_rna_sample_00064_23KKJ7LT4_1,"5,6,7,8",AAGGTGTTAG-TGTGCTGGTG,555973866,546005560,9968306,0,0.0162,0.9821,0.0179,0.0
tih_rna_sample_00066_23KKJ7LT4_1,"5,6,7,8",CGAGATTAGA-CTAATCGCGG,335470275,328624118,6846157,0,0.0098,0.9796,0.0204,0.0
tih_rna_sample_00068_23KKJ7LT4_1,"5,6,7,8",ACAACACACA-CATCGGCACT,342747867,337504594,5243273,0,0.01,0.9847,0.0153,0.0
tih_rna_sample_00070_23KKJ7LT4_1,"5,6,7,8",ACAGAGGCGT-GACATATCGG,379826057,373638295,6187762,0,0.0111,0.9837,0.0163,0.0
tih_rna_sample_00071_23KKJ7LT4_1,"5,6,7,8",AACTGTACGG-CTCCAATATG,422450394,415046001,7404393,0,0.0123,0.9825,0.0175,0.0
tih_rna_sample_00072_23KKJ7LT4_1,"5,6,7,8",GCGAAGTAGG-ACCATTGTGT,452273453,445465934,6807519,0,0.0132,0.9849,0.0151,0.0
tih_rna_sample_00073_23KKJ7LT4_1,"5,6,7,8",GTGAAGACAC-TGGCTTGATC,272597989,268561817,4036172,0,0.008,0.9852,0.0148,0.0
tih_rna_sample_00074_23KKJ7LT4_1,"5,6,7,8",GACTTAGGTC-CTATGGACTT,587277188,579366166,7911022,0,0.0172,0.9865,0.0135,0.0
tih_rna_sample_00077_23KKJ7LT4_1,"5,6,7,8",CAACGTTGAC-TTGGACGGAA,324256687,318531348,5725339,0,0.0095,0.9823,0.0177,0.0
tih_rna_sample_00078_23KKJ7LT4_1,"5,6,7,8",TGACATAGGT-TACCAGAGAT,434990186,428939494,6050692,0,0.0127,0.9861,0.0139,0.0
tih_rna_sample_00079_23KKJ7LT4_1,"5,6,7,8",TTACACCAAC-ATGAGTTAGG,234525878,230771763,3754115,0,0.0069,0.984,0.016,0.0
tih_rna_sample_00080_23KKJ7LT4_1,"5,6,7,8",CCTGGAATTA-CGTCATCGAA,251713156,245771240,5941916,0,0.0074,0.9764,0.0236,0.0
tih_rna_sample_00081_23KKJ7LT4_1,"5,6,7,8",GCAACATCAA-TGACCTAGTT,359105649,352696419,6409230,0,0.0105,0.9822,0.0178,0.0
tih_rna_sample_00082_23KKJ7LT4_1,"5,6,7,8",ACAGCCAGGT-TCATGGTACT,377856478,371801548,6054930,0,0.011,0.984,0.016,0.0
tih_rna_sample_00083_23KKJ7LT4_1,"5,6,7,8",TAGTCCATCT-GACAGGACAG,331174788,325754526,5420262,0,0.0097,0.9836,0.0164,0.0
tih_rna_sample_00084_23KKJ7LT4_1,"5,6,7,8",GCCTCTCAGA-CGTGACGACT,176284734,173067079,3217655,0,0.0052,0.9817,0.0183,0.0
tih_rna_sample_00086_23KKJ7LT4_1,"5,6,7,8",AAGACTCTCG-GCTCTCCTTC,400769882,393416780,7353102,0,0.0117,0.9817,0.0183,0.0
tih_rna_sample_00170_23KKJ7LT4_1,"1,2,3,4",CCAATGTTGA-CTTGAATGTC,286597921,281079927,5517994,0,0.0084,0.9807,0.0193,0.0
tih_rna_sample_00176_23KKJ7LT4_1,"1,2,3,4",AGGAGACCAC-TACCACGTAG,261553534,255848754,5704780,0,0.0076,0.9782,0.0218,0.0
tih_rna_sample_00179_23KKJ7LT4_1,"1,2,3,4",TCAATCTAGC-TCCGAATAAG,368668141,360885720,7782421,0,0.0108,0.9789,0.0211,0.0
tih_rna_sample_00180_23KKJ7LT4_1,"1,2,3,4",TTGTGATCCT-ATGAAGGCAT,463737654,454361407,9376247,0,0.0136,0.9798,0.0202,0.0
tih_rna_sample_00183_23KKJ7LT4_1,"1,2,3,4",TTAGTTGCTG-ATGGCGGATT,303019249,297010844,6008405,0,0.0089,0.9802,0.0198,0.0
tih_rna_sample_00184_23KKJ7LT4_1,"1,2,3,4",AGTACAACTG-CATTGAGTTC,483687852,473636034,10051818,0,0.0141,0.9792,0.0208,0.0
tih_rna_sample_00185_23KKJ7LT4_1,"1,2,3,4",GTACGCATCG-GAGTTGTTCA,290888564,283734596,7153968,0,0.0085,0.9754,0.0246,0.0
tih_rna_sample_00186_23KKJ7LT4_1,"1,2,3,4",ACTTCCGTTC-CAATTCCGTG,459486047,449913679,9572368,0,0.0134,0.9792,0.0208,0.0
tih_rna_sample_00198_23KKJ7LT4_1,"1,2,3,4",ACGCAACACA-CATTCAGGAG,247926719,242340917,5585802,0,0.0072,0.9775,0.0225,0.0
tih_rna_sample_00200_23KKJ7LT4_1,"1,2,3,4",CATCAGGCGT-CGTGTTACCG,109061186,106318010,2743176,0,0.0032,0.9748,0.0252,0.0
tih_rna_sample_00202_23KKJ7LT4_1,"1,2,3,4",ATAGGCAGTG-CAGAACTTAG,506896219,497116211,9780008,0,0.0148,0.9807,0.0193,0.0
tih_rna_sample_00204_23KKJ7LT4_1,"1,2,3,4",GTAACAGGAA-TGTCTTCAGA,16997344,16622954,374390,0,0.0005,0.978,0.022,0.0
tih_rna_sample_00206_23KKJ7LT4_1,"1,2,3,4",TTCGCGGACT-AGAGAGTGGT,436109161,427415331,8693830,0,0.0127,0.9801,0.0199,0.0
tih_rna_sample_00207_23KKJ7LT4_1,"1,2,3,4",AACCTGATCT-ATTCCGTCCG,315520314,308199103,7321211,0,0.0092,0.9768,0.0232,0.0
tih_rna_sample_00208_23KKJ7LT4_1,"5,6,7,8",GAGTCGCTTC-AGCGAAGATT,386792813,379646125,7146688,0,0.0113,0.9815,0.0185,0.0
tih_rna_sample_00216_23KKJ7LT4_1,"5,6,7,8",TTCAGATCCA-TGGCATTGGA,69982727,68815429,1167298,0,0.002,0.9833,0.0167,0.0
tih_rna_sample_00219_23KKJ7LT4_1,"5,6,7,8",GTATCTGAGG-ACGTATCTTG,335334306,330649185,4685121,0,0.0098,0.986,0.014,0.0
tih_rna_sample_00223_23KKJ7LT4_1,"5,6,7,8",CACGAGTGTC-TAGGCTAGAG,417225338,411392891,5832447,0,0.0122,0.986,0.014,0.0
tih_rna_sample_00224_23KKJ7LT4_1,"5,6,7,8",ACGGTCGCAT-GTACTCTCTA,326352450,321240253,5112197,0,0.0095,0.9843,0.0157,0.0
tih_rna_sample_00225_23KKJ7LT4_1,"5,6,7,8",TTACACACGG-AACTCCGAGA,466734904,459411697,7323207,0,0.0136,0.9843,0.0157,0.0
tih_rna_sample_00226_23KKJ7LT4_1,"5,6,7,8",CAAGGATCGA-GCAGACACAA,319097256,313974720,5122536,0,0.0093,0.9839,0.0161,0.0
tih_rna_sample_00234_23KKJ7LT4_1,"1,2,3,4",CCACCTGCTT-TGTTACCGTC,390310235,380705931,9604304,0,0.0114,0.9754,0.0246,0.0
tih_rna_sample_00239_23KKJ7LT4_1,"5,6,7,8",AAGAGCTCGC-CCAATAGATC,284449737,279938359,4511378,0,0.0083,0.9841,0.0159,0.0
tih_rna_sample_00243_23KKJ7LT4_1,"5,6,7,8",AGGACGGACA-GAAGTCGTGG,340376440,333707932,6668508,0,0.0099,0.9804,0.0196,0.0
tih_rna_sample_00244_23KKJ7LT4_1,"5,6,7,8",CCTATGTGTA-TAGTGAGTCG,422882094,416241708,6640386,0,0.0124,0.9843,0.0157,0.0
tih_rna_sample_00245_23KKJ7LT4_1,"5,6,7,8",TAGGTTCAAG-ACTTACCGGC,517049825,509545050,7504775,0,0.0151,0.9855,0.0145,0.0
tih_rna_sample_00247_23KKJ7LT4_1,"5,6,7,8",GAAGATCGAC-AGTGACCACG,222632937,219095594,3537343,0,0.0065,0.9841,0.0159,0.0