File Info

Filename
output/Logs/Info.log
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/38/4328b383c01c3cee1513d81df0b07d/output/Logs/Info.log
Size
4.2 KB
Attempt
2026-06-08T06:18:22Z thread 426 Sample sheet being processed by common lib? Yes
2026-06-08T06:18:22Z thread 426 SampleSheet Settings: 
2026-06-08T06:18:22Z thread 426   FastqCompressionFormat = gzip
2026-06-08T06:18:22Z thread 426   NoLaneSplitting = FALSE
2026-06-08T06:18:22Z thread 426   OverrideCycles = Y151;I10;I10;Y151
2026-06-08T06:18:22Z thread 426   SoftwareVersion = 4.3.6
2026-06-08T06:18:22Z thread 426 
2026-06-08T06:18:22Z thread 426 Index Read 2 (i5): The barcode and UMI outputs will be processed and output in Reverse Complement of Sample Sheet inputs. OverrideCycles bases for this read will be interpreted in reverse.
2026-06-08T06:18:22Z thread 426 shared-thread-linux-native-asio output is disabled
2026-06-08T06:18:22Z thread 426 bcl-convert Version 4.4.6
2026-06-08T06:18:22Z thread 426 Copyright (c) 2014-2025 Illumina, Inc.
2026-06-08T06:18:22Z thread 426 Command Line: --tiles s_7 --output-directory output --bcl-input-directory rundir --sample-sheet rundir/SampleSheet.csv 
2026-06-08T06:18:22Z thread 426 Conversion Begins.
2026-06-08T06:18:22Z thread 426 Input BCL Information:
2026-06-08T06:18:22Z thread 426     Read Structure: 2026-06-08T06:18:22Z thread 426 Y1512026-06-08T06:18:22Z thread 426 ;2026-06-08T06:18:22Z thread 426 I102026-06-08T06:18:22Z thread 426 ;2026-06-08T06:18:22Z thread 426 I102026-06-08T06:18:22Z thread 426 ;2026-06-08T06:18:22Z thread 426 Y1512026-06-08T06:18:22Z thread 426 
2026-06-08T06:18:22Z thread 426     RunInfo.xml file lists: 8 lanes, 6272 tiles
2026-06-08T06:18:22Z thread 426     BCL file format: cbcl
2026-06-08T06:18:22Z thread 426     Positions file format: slocs
2026-06-08T06:18:22Z thread 426     Filter file format: filter
2026-06-08T06:18:22Z thread 426 Conversion Information:
2026-06-08T06:18:22Z thread 426     Tile filtering: converting 784/6272 tiles
2026-06-08T06:18:22Z thread 426     Sample Count for Lane 1: 48
2026-06-08T06:18:22Z thread 426     Lane 1 will be skipped because there are no tiles to convert (not listed in RunInfo.xml tile list?)
2026-06-08T06:18:22Z thread 426     Sample Count for Lane 2: 48
2026-06-08T06:18:22Z thread 426     Lane 2 will be skipped because there are no tiles to convert (not listed in RunInfo.xml tile list?)
2026-06-08T06:18:22Z thread 426     Sample Count for Lane 3: 48
2026-06-08T06:18:22Z thread 426     Lane 3 will be skipped because there are no tiles to convert (not listed in RunInfo.xml tile list?)
2026-06-08T06:18:22Z thread 426     Sample Count for Lane 4: 48
2026-06-08T06:18:22Z thread 426     Lane 4 will be skipped because there are no tiles to convert (not listed in RunInfo.xml tile list?)
2026-06-08T06:18:22Z thread 426     Sample Count for Lane 5: 48
2026-06-08T06:18:22Z thread 426     Lane 5 will be skipped because there are no tiles to convert (not listed in RunInfo.xml tile list?)
2026-06-08T06:18:22Z thread 426     Sample Count for Lane 6: 48
2026-06-08T06:18:22Z thread 426     Lane 6 will be skipped because there are no tiles to convert (not listed in RunInfo.xml tile list?)
2026-06-08T06:18:22Z thread 426     Sample Count for Lane 7: 48
2026-06-08T06:18:22Z thread 426     Sample Count for Lane 8: 48
2026-06-08T06:18:22Z thread 426     Lane 8 will be skipped because there are no tiles to convert (not listed in RunInfo.xml tile list?)
2026-06-08T06:18:22Z thread 426     Expected number of sample FASTQ files to be created: 96
2026-06-08T06:18:22Z thread 426 # CPU hw threads available: 64
2026-06-08T06:18:22Z thread 426 Parallel Tiles: 4. Threads Per Tile: 16
2026-06-08T06:18:22Z thread 426 SW compressors: 64
2026-06-08T06:18:22Z thread 426 SW decompressors: 32
2026-06-08T06:18:22Z thread 426 SW FASTQ compression level: 1
2026-06-08T06:51:05Z thread 426 Lane 7 Post-run Information:
2026-06-08T06:51:05Z thread 426     Total clusters: 4276187445
2026-06-08T06:51:05Z thread 426     Total Genomic Reads: 8552374890
2026-06-08T06:51:05Z thread 426     Total Genomic Input Gigabases 1291.41
2026-06-08T06:51:05Z thread 426     Minimum reads for a sample: 2568238
2026-06-08T06:51:05Z thread 426     Maximum reads for a sample: 296396798
2026-06-08T06:51:05Z thread 426     Average reads per sample: 168687909.92
2026-06-08T06:51:05Z thread 426     Undetermined reads: 455355214
2026-06-08T06:51:07Z thread 426 Conversion Complete.