File Info

Filename
.command.log
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/79/b2cf7256a5154992c66625c288bd40/.command.log
Size
4.1 KB
Task
NFCORE_RNAFUSION:DEMUX_FROM_RUNDIR:DEMULTIPLEX:FLOWCELL_QC (20260107_LH00166_0227_A23KKJ7LT4)
Attempt

Content

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  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/f3/7f0a48d7570689412f68ab8e48090f/output/Reports/Quality_Metrics.csv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/4e/8e0f45d63f236e30d4455741749ace/output/Reports/Demultiplex_Stats.csv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/e5/810c1ed99c9777720a9775fa34a90e/output/Reports/Index_Hopping_Counts.csv
  Downloading: s3://natera-platform-sandbox/pipeline-inputs/illumina_run_folders/data/20260107_LH00166_0227_A23KKJ7LT4/InterOp/ExtendedTileMetricsOut.bin
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/e5/810c1ed99c9777720a9775fa34a90e/output/Reports/Demultiplex_Stats.csv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/d7/5418e87bf4204107683ccca95a5e98/output/Reports/Quality_Metrics.csv
  Downloading: s3://natera-platform-sandbox/pipeline-inputs/illumina_run_folders/data/20260107_LH00166_0227_A23KKJ7LT4/InterOp/EmpiricalPhasingMetricsOut.bin
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/79/b2cf7256a5154992c66625c288bd40/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/f3/7f0a48d7570689412f68ab8e48090f/output/Reports/Index_Hopping_Counts.csv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/e5/810c1ed99c9777720a9775fa34a90e/output/Reports/Quality_Metrics.csv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/21/86594e8df030ec1333e6ac02d4e24b/output/Reports/Demultiplex_Stats.csv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/52/bb2c0a74896dcc763c7a3539d18407/output/Reports/Demultiplex_Stats.csv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/4e/8e0f45d63f236e30d4455741749ace/output/Reports/Quality_Metrics.csv
  Downloading: s3://natera-platform-sandbox/pipeline-inputs/illumina_run_folders/data/20260107_LH00166_0227_A23KKJ7LT4/InterOp/TileMetricsOut.bin
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/21/86594e8df030ec1333e6ac02d4e24b/output/Reports/Index_Hopping_Counts.csv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/54/f952a746ed41165c6626d70cdcd334/output/Reports/Quality_Metrics.csv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/4e/8e0f45d63f236e30d4455741749ace/output/Reports/Index_Hopping_Counts.csv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/54/f952a746ed41165c6626d70cdcd334/output/Reports/Demultiplex_Stats.csv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/54/f952a746ed41165c6626d70cdcd334/output/Reports/Index_Hopping_Counts.csv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/d7/5418e87bf4204107683ccca95a5e98/output/Reports/Demultiplex_Stats.csv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/f3/7f0a48d7570689412f68ab8e48090f/output/Reports/Demultiplex_Stats.csv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/38/4328b383c01c3cee1513d81df0b07d/output/Reports/Index_Hopping_Counts.csv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/38/4328b383c01c3cee1513d81df0b07d/output/Reports/Demultiplex_Stats.csv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/52/bb2c0a74896dcc763c7a3539d18407/output/Reports/Index_Hopping_Counts.csv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/52/bb2c0a74896dcc763c7a3539d18407/output/Reports/Quality_Metrics.csv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/21/86594e8df030ec1333e6ac02d4e24b/output/Reports/Quality_Metrics.csv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/38/4328b383c01c3cee1513d81df0b07d/output/Reports/Quality_Metrics.csv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/79/b2cf7256a5154992c66625c288bd40/.command.run
  Downloading: s3://natera-platform-sandbox/pipeline-inputs/illumina_run_folders/data/20260107_LH00166_0227_A23KKJ7LT4/RunInfo.xml
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/d7/5418e87bf4204107683ccca95a5e98/output/Reports/Index_Hopping_Counts.csv
==> STAGING COMPLETE (30 inputs)

Wrote flowcell_qc.csv with 13/13 metrics populated